Query psy16002
Match_columns 229
No_of_seqs 37 out of 39
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 18:27:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v71_A Nuclear distribution pr 89.3 3.8 0.00013 35.0 10.7 115 79-200 11-125 (189)
2 2dfs_A Myosin-5A; myosin-V, in 86.7 15 0.00052 38.0 15.3 66 129-198 986-1051(1080)
3 3fx7_A Putative uncharacterize 84.5 9.4 0.00032 29.3 9.5 65 155-219 16-87 (94)
4 3oja_B Anopheles plasmodium-re 84.4 25 0.00086 32.4 16.2 24 202-225 565-588 (597)
5 2fxo_A Myosin heavy chain, car 81.6 17 0.00058 28.4 15.8 114 69-197 4-124 (129)
6 3o0z_A RHO-associated protein 81.0 24 0.00081 29.6 12.8 86 87-172 50-138 (168)
7 2v0o_A FCHO2, FCH domain only 73.4 19 0.00064 29.8 8.8 58 134-191 94-154 (276)
8 1i84_S Smooth muscle myosin he 73.0 11 0.00036 39.1 8.6 33 76-108 869-901 (1184)
9 1i84_S Smooth muscle myosin he 72.8 11 0.00038 39.0 8.7 31 79-109 858-888 (1184)
10 3u59_A Tropomyosin beta chain; 72.6 27 0.00094 26.1 11.7 75 142-217 27-101 (101)
11 2ocy_A RAB guanine nucleotide 71.8 41 0.0014 27.7 14.9 127 78-215 20-149 (154)
12 2efl_A Formin-binding protein 71.1 29 0.00098 29.0 9.5 49 142-190 106-154 (305)
13 3u1c_A Tropomyosin alpha-1 cha 66.9 38 0.0013 25.5 12.7 75 142-217 27-101 (101)
14 2efk_A CDC42-interacting prote 64.8 38 0.0013 28.3 9.0 21 135-155 124-144 (301)
15 3tnu_B Keratin, type II cytosk 64.1 38 0.0013 26.2 8.3 81 130-221 39-122 (129)
16 2v66_B Nuclear distribution pr 63.8 16 0.00056 28.6 6.1 70 127-200 3-72 (111)
17 3tnu_A Keratin, type I cytoske 63.1 30 0.001 26.9 7.5 80 131-221 42-124 (131)
18 3ghg_A Fibrinogen alpha chain; 62.7 64 0.0022 31.7 11.1 38 128-165 58-95 (562)
19 1gd2_E Transcription factor PA 59.6 30 0.001 24.9 6.4 51 168-221 16-69 (70)
20 2v66_B Nuclear distribution pr 56.3 70 0.0024 25.0 13.7 22 150-171 47-68 (111)
21 1gk4_A Vimentin; intermediate 55.5 28 0.00095 25.3 5.7 47 175-221 24-73 (84)
22 2v71_A Nuclear distribution pr 54.5 99 0.0034 26.2 20.8 17 77-93 23-39 (189)
23 1deb_A APC protein, adenomatou 52.8 52 0.0018 22.9 6.3 43 152-198 3-45 (54)
24 3r4h_A Coiled coil helix CC-TE 52.5 25 0.00084 22.2 4.2 25 72-96 3-27 (34)
25 1wt6_A Myotonin-protein kinase 52.5 44 0.0015 25.1 6.4 37 73-109 26-62 (81)
26 3swy_A Cyclic nucleotide-gated 47.9 58 0.002 21.9 5.9 35 183-217 4-45 (46)
27 4dzn_A Coiled-coil peptide CC- 45.9 42 0.0014 21.0 4.5 27 72-98 3-29 (33)
28 2eqb_B RAB guanine nucleotide 44.3 1.1E+02 0.0036 23.6 12.5 90 78-196 5-95 (97)
29 4ioe_A Secreted protein ESXB; 43.3 78 0.0027 21.8 9.3 77 142-218 13-90 (93)
30 2yy0_A C-MYC-binding protein; 40.6 45 0.0015 22.7 4.5 26 82-107 23-48 (53)
31 1x8y_A Lamin A/C; structural p 40.6 23 0.0008 26.0 3.3 56 166-221 17-75 (86)
32 2fxo_A Myosin heavy chain, car 40.5 1.2E+02 0.0043 23.3 11.5 40 70-109 12-58 (129)
33 2elk_A SPCC24B10.08C protein; 39.5 22 0.00076 23.8 2.8 27 13-39 8-35 (58)
34 3cvf_A Homer-3, homer protein 38.7 1.2E+02 0.004 22.4 7.9 27 88-114 9-35 (79)
35 3cve_A Homer protein homolog 1 38.4 1.1E+02 0.0038 22.2 9.0 48 89-143 4-51 (72)
36 1w0t_A Telomeric repeat bindin 37.6 23 0.00077 23.1 2.6 27 14-40 2-29 (53)
37 1f5n_A Interferon-induced guan 37.2 2.9E+02 0.01 26.6 14.7 128 71-219 455-584 (592)
38 3mov_A Lamin-B1; LMNB1, B-type 36.8 53 0.0018 24.7 4.8 60 162-221 15-84 (95)
39 4abm_A Charged multivesicular 36.0 1.2E+02 0.0042 21.9 9.2 63 131-197 10-72 (79)
40 3vkg_A Dynein heavy chain, cyt 35.6 5.1E+02 0.018 30.5 14.3 63 135-198 2043-2105(3245)
41 3oja_B Anopheles plasmodium-re 35.0 2.6E+02 0.009 25.5 15.1 35 76-110 454-488 (597)
42 1ci6_A Transcription factor AT 34.8 78 0.0027 21.9 5.1 33 72-104 24-56 (63)
43 2jee_A YIIU; FTSZ, septum, coi 34.2 1.4E+02 0.0049 22.1 7.5 26 79-104 28-53 (81)
44 3uun_A Dystrophin; triple heli 34.1 1.2E+02 0.0041 21.2 11.0 37 129-165 80-116 (119)
45 1guu_A C-MYB, MYB proto-oncoge 33.8 27 0.00091 22.5 2.4 26 14-39 3-29 (52)
46 3uul_A Utrophin; spectrin repe 32.6 1.3E+02 0.0044 21.2 11.6 37 129-165 80-116 (118)
47 1go4_E MAD1 (mitotic arrest de 31.2 1.4E+02 0.0046 23.0 6.4 32 79-110 13-44 (100)
48 3sjm_A Telomeric repeat-bindin 29.7 37 0.0013 23.4 2.7 28 13-40 10-38 (64)
49 3ghg_B Fibrinogen beta chain; 29.0 3.9E+02 0.013 25.6 11.1 35 122-156 82-117 (461)
50 2d9a_A B-MYB, MYB-related prot 28.0 38 0.0013 22.5 2.5 27 13-39 7-34 (60)
51 3tnu_B Keratin, type II cytosk 27.1 2.1E+02 0.0072 21.9 11.6 35 79-113 37-71 (129)
52 2llk_A Cyclin-D-binding MYB-li 27.1 36 0.0012 24.4 2.4 26 14-39 23-48 (73)
53 1gvd_A MYB proto-oncogene prot 26.4 49 0.0017 21.2 2.7 26 14-39 3-29 (52)
54 2l5g_A GPS2 protein, G protein 26.3 90 0.0031 20.4 3.8 28 80-107 10-37 (38)
55 1x41_A Transcriptional adaptor 25.4 43 0.0015 22.4 2.4 27 13-39 7-34 (60)
56 1ity_A TRF1; helix-turn-helix, 25.2 44 0.0015 22.9 2.4 27 14-40 10-37 (69)
57 3tnu_A Keratin, type I cytoske 24.1 2.5E+02 0.0084 21.6 10.5 34 79-112 39-72 (131)
58 2yum_A ZZZ3 protein, zinc fing 24.0 58 0.002 22.5 2.9 26 14-39 8-39 (75)
59 2din_A Cell division cycle 5-l 24.0 50 0.0017 22.3 2.5 28 14-41 9-36 (66)
60 2dim_A Cell division cycle 5-l 23.8 47 0.0016 22.7 2.4 27 13-39 8-35 (70)
61 3ol1_A Vimentin; structural ge 23.5 2.5E+02 0.0085 21.4 13.6 98 85-211 20-117 (119)
62 1hjb_A Ccaat/enhancer binding 22.5 1.4E+02 0.0049 22.1 5.0 37 73-109 38-74 (87)
63 3q8t_A Beclin-1; autophagy, AT 22.5 2.4E+02 0.0082 20.9 12.9 46 72-117 5-50 (96)
64 3ghg_C Fibrinogen gamma chain; 21.9 3.5E+02 0.012 25.4 8.5 35 122-156 25-60 (411)
65 2xv5_A Lamin-A/C; structural p 20.7 2.4E+02 0.0082 20.2 5.9 47 175-221 3-52 (74)
66 2w83_C C-JUN-amino-terminal ki 20.4 75 0.0026 23.6 2.9 31 70-100 43-73 (77)
67 3zqc_A MYB3; transcription-DNA 20.4 60 0.0021 24.8 2.6 26 14-39 2-28 (131)
68 2ckx_A NGTRF1, telomere bindin 20.4 59 0.002 23.8 2.4 27 15-41 1-28 (83)
No 1
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=89.27 E-value=3.8 Score=34.96 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=77.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 79 ELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQST 158 (229)
Q Consensus 79 EL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~Qsa 158 (229)
|+.--|+...+.+.++..++.|=.....--.-+.+...+++. ....|...|+.++..|...++.+..+...-+.++.
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~---~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~ 87 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLV---QAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY 87 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666667776665544333322233333333322 23568889999999999888888887777777777
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhH
Q psy16002 159 QLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERH 200 (229)
Q Consensus 159 Elv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh 200 (229)
.-++-|.+- +..++..+..++.+++.|||.=-+|....
T Consensus 88 ~~~~~Lq~e----l~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 88 KQVSVLEDD----LSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 777777776 44566788889999999999887776544
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.71 E-value=15 Score=38.04 Aligned_cols=66 Identities=11% Similarity=0.166 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy16002 129 ENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSE 198 (229)
Q Consensus 129 e~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~ 198 (229)
-..|...+.++...+++..+.....-+...++-.||. ..|..++..+.+.+.++-.||..+.....
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~----~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE----QLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666555555444444444554 55566666666666666666655555543
No 3
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=84.54 E-value=9.4 Score=29.34 Aligned_cols=65 Identities=26% Similarity=0.309 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q psy16002 155 MQSTQLTNELKMANNALMNSFEK-------GKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIA 219 (229)
Q Consensus 155 ~QsaElv~dL~kAnsaLv~afe~-------AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~~ 219 (229)
.+...|..+|..+=+.|-..|+. -++|.....++|-+.+..-.+.-.+++.-|+..|+.||+.-.
T Consensus 16 ~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~~~~ 87 (94)
T 3fx7_A 16 GHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEEDYL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHHHHH
Confidence 34455666666666666666655 458999999999999999999999999999999999998654
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.42 E-value=25 Score=32.37 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccc
Q psy16002 202 TQVQHLKQRIVSLEEHIARYNSKE 225 (229)
Q Consensus 202 ~qv~~L~~~~~~LE~~~~~~~~~~ 225 (229)
++...+++.+..|++..-++-.-.
T Consensus 565 ~e~~~~~~~~~~l~~~~~~~~~~~ 588 (597)
T 3oja_B 565 QETSLKRQKVKQLEAKKNRNPDTR 588 (597)
T ss_dssp HHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHhcCCCccc
Confidence 455677788888888877655433
No 5
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=81.61 E-value=17 Score=28.35 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=58.8
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------hHHhhhhcCCCchhhhHHHHHHHHHHHHH
Q psy16002 69 MDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLA-------CEELTQHAGDTDDKSVENKLRERLKEMSQ 141 (229)
Q Consensus 69 ~dLE~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~-------aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~ 141 (229)
|=|.-+.---|+.++.+++..|+.++.-.++.+..|+.....+. .+.++....+++...|..+|..+=.+|-.
T Consensus 4 PLL~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~ 83 (129)
T 2fxo_A 4 PLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEA 83 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555566667777777777777777777777777766654332 22222222233333333333333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy16002 142 TLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMS 197 (229)
Q Consensus 142 ~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~ 197 (229)
.| ..-..+ +.+.-..|+. +..+|||-+..+..|+.++....
T Consensus 84 ~l----~el~~r-------leeeee~~~~----L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 84 KV----KEMNKR-------LEDEEEMNAE----LTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HH----HHHHHH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222222 2222233333 33567777777777777776653
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.02 E-value=24 Score=29.64 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy16002 87 KAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSR---TYELRQMQSTQLTNE 163 (229)
Q Consensus 87 ~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k---~~e~r~~QsaElv~d 163 (229)
+-||..++..++..|..|+-.+..+-++....-.+.+--.-+-.+|.+|++.|...|+.+.. ....-..+..+-+++
T Consensus 50 ~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~ 129 (168)
T 3o0z_A 50 NRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444443331111100011334566666666655554432 122333445555555
Q ss_pred HHhhhHHHH
Q psy16002 164 LKMANNALM 172 (229)
Q Consensus 164 L~kAnsaLv 172 (229)
|-|..+++-
T Consensus 130 lEKe~a~~e 138 (168)
T 3o0z_A 130 SEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 555555444
No 7
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=73.39 E-value=19 Score=29.84 Aligned_cols=58 Identities=10% Similarity=0.197 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHhhhhhhHHHHHHHHH
Q psy16002 134 ERLKEMSQTLERVSRTYELRQMQSTQLTN---ELKMANNALMNSFEKGKKKSQSRLKRLEN 191 (229)
Q Consensus 134 ~rlqeL~~~Le~~~k~~e~r~~QsaElv~---dL~kAnsaLv~afe~AKrK~q~r~kKLEq 191 (229)
..|+++...|.......+.++....+.+. ++.+.-......+++||++|...++.+|.
T Consensus 94 ~~l~~~~~~l~~~~~~~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak~~Y~~~c~e~e~ 154 (276)
T 2v0o_A 94 RKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQER 154 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544332 22222222345677777777777766653
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=73.04 E-value=11 Score=39.12 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=15.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHH
Q psy16002 76 LMQELLSMREDKAELRARIYNLEHEKDVLEMKL 108 (229)
Q Consensus 76 imQEL~a~RE~~aeLk~~l~llEkEK~~lElr~ 108 (229)
+..+|....+.+.++..++..+++++..++..+
T Consensus 869 l~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555544444333
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.81 E-value=11 Score=38.98 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=16.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16002 79 ELLSMREDKAELRARIYNLEHEKDVLEMKLN 109 (229)
Q Consensus 79 EL~a~RE~~aeLk~~l~llEkEK~~lElr~~ 109 (229)
|+-.+++++.+++.++..++.+...++.++.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~ 888 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHT 888 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555544444
No 10
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.60 E-value=27 Score=26.06 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16002 142 TLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEH 217 (229)
Q Consensus 142 ~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~ 217 (229)
.++.-.+..+.++.+.-+-|..|++-+..|-.-|+.+.-....-..+||.-- --...-..+|+.|.-||+.||++
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e-k~~~~AE~evasLnRriqllEEe 101 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE-KKATDAEAEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccC
Confidence 3444455566677777778888888888888888877766666666666541 12233445999999999999874
No 11
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.77 E-value=41 Score=27.73 Aligned_cols=127 Identities=19% Similarity=0.169 Sum_probs=71.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 78 QELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQS 157 (229)
Q Consensus 78 QEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~Qs 157 (229)
-+|..+|.++.-.+.++..+|..+..+.. +....+...+ -..+|..++.+=...-..+-+.-..--...
T Consensus 20 D~L~~~R~el~~~~~ri~~lE~~r~~~~~-l~~~~~~~~~----------e~~~L~~~l~~E~~~R~~aE~~~~~ie~El 88 (154)
T 2ocy_A 20 EQLNKSLKTIASQKAAIENYNQLKEDYNT-LKRELSDRDD----------EVKRLREDIAKENELRTKAEEEADKLNKEV 88 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHH-HHTHHHHHHH----------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888776654332 1001111111 122233333222222222222222223445
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHH
Q psy16002 158 TQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIM---SERHATQVQHLKQRIVSLE 215 (229)
Q Consensus 158 aElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M---~~rh~~qv~~L~~~~~~LE 215 (229)
.+|..-|+--=...|..=+++.-+.+.+..+|+.|+..- -..+..||..||.-+..++
T Consensus 89 EeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 89 EDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666764444556666888888899999999998764 4567778888876554433
No 12
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=71.11 E-value=29 Score=28.99 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHH
Q psy16002 142 TLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLE 190 (229)
Q Consensus 142 ~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLE 190 (229)
.|......-+..+....+.+..+.+.-......+++||++|....+.+|
T Consensus 106 ~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e 154 (305)
T 2efl_A 106 DLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEAD 154 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444455555556666655555555
No 13
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.87 E-value=38 Score=25.45 Aligned_cols=75 Identities=17% Similarity=0.085 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16002 142 TLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEH 217 (229)
Q Consensus 142 ~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~ 217 (229)
.++.-.+..+.++.+.-+-|..|.+-+..|-.=|+.+.-....-..+||.- .--...-..+|..|.-||+.||++
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~-ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA-EENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccC
Confidence 344444556677778888888888888888888887766666666666643 222233344999999999999974
No 14
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=64.79 E-value=38 Score=28.34 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16002 135 RLKEMSQTLERVSRTYELRQM 155 (229)
Q Consensus 135 rlqeL~~~Le~~~k~~e~r~~ 155 (229)
.++.....+++..++.+..+.
T Consensus 124 ~~~~~~~~l~KaKk~Y~~~~~ 144 (301)
T 2efk_A 124 QLENGFKQLENSKRKFERDCR 144 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 15
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.09 E-value=38 Score=26.18 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHH---HH
Q psy16002 130 NKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQV---QH 206 (229)
Q Consensus 130 ~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv---~~ 206 (229)
.+|+.+||.|...++.... +.+-|-+-| ...-.-|..+-+.++..+-.||.++..+...-+.|+ +.
T Consensus 39 ~elrr~iq~L~~el~~l~~-------~~~~LE~~l----~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 107 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKK-------QCANLQNAI----ADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQE 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4666777777766654322 222222222 222233444445566677778888777777666555 33
Q ss_pred HHHHHHHHHHhhccc
Q psy16002 207 LKQRIVSLEEHIARY 221 (229)
Q Consensus 207 L~~~~~~LE~~~~~~ 221 (229)
|=--=.+|+-+|.-|
T Consensus 108 LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 108 LMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 434445677777655
No 16
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=63.82 E-value=16 Score=28.63 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhH
Q psy16002 127 SVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERH 200 (229)
Q Consensus 127 sRe~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh 200 (229)
.|..+|++....|...++.+..+...-+.++.-.++.|.+-- ..++..+..++.+++.|||.=-++.-.+
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El----~~lr~~~~~l~~~iReLEq~NDDLER~~ 72 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDL----SQTRAIKEQLHKYVRELEQANDDLERAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 478899999999999999998888777777777777777754 4478889999999999999988776544
No 17
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.12 E-value=30 Score=26.94 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHH---HH
Q psy16002 131 KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQ---HL 207 (229)
Q Consensus 131 ~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~---~L 207 (229)
+|+.+||.|...++.... +.+-|-+-| ..+-.-|..+-+.++..+-.||.++..+...-+.|+. .|
T Consensus 42 elrr~iq~L~~el~~l~~-------~~~sLE~~l----~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLS-------MKASLENSL----EETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-------hHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777766654322 222222222 2223334444556677777888888888776666553 34
Q ss_pred HHHHHHHHHhhccc
Q psy16002 208 KQRIVSLEEHIARY 221 (229)
Q Consensus 208 ~~~~~~LE~~~~~~ 221 (229)
=--=..|+-+|.-|
T Consensus 111 l~vKl~Ld~EIatY 124 (131)
T 3tnu_A 111 LDVKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445677777655
No 18
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.68 E-value=64 Score=31.67 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 128 VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELK 165 (229)
Q Consensus 128 Re~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~ 165 (229)
-+..++.+|++|...|+.+.++...-+++...+...|+
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr 95 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILR 95 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Confidence 58899999999999999999999988888877777665
No 19
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=59.59 E-value=30 Score=24.93 Aligned_cols=51 Identities=33% Similarity=0.521 Sum_probs=38.9
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHhhccc
Q psy16002 168 NNALMNSFEKGKKKSQSRLKRLENEIVIMSERH---ATQVQHLKQRIVSLEEHIARY 221 (229)
Q Consensus 168 nsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh---~~qv~~L~~~~~~LE~~~~~~ 221 (229)
|.+--.||+.-| +..++.||.++..+...+ ..+...|...+..|..++..+
T Consensus 16 NR~AQRafReRK---~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 16 NRAAQRAFRKRK---EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 667778888544 456899999999998776 456678888888888776543
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=56.28 E-value=70 Score=25.01 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q psy16002 150 YELRQMQSTQLTNELKMANNAL 171 (229)
Q Consensus 150 ~e~r~~QsaElv~dL~kAnsaL 171 (229)
-+..+.....-++||=.+|.-|
T Consensus 47 lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 47 TRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHH
Confidence 3344444445555555555543
No 21
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=55.46 E-value=28 Score=25.34 Aligned_cols=47 Identities=32% Similarity=0.414 Sum_probs=27.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHhhccc
Q psy16002 175 FEKGKKKSQSRLKRLENEIVIMSERHATQV---QHLKQRIVSLEEHIARY 221 (229)
Q Consensus 175 fe~AKrK~q~r~kKLEqQm~~M~~rh~~qv---~~L~~~~~~LE~~~~~~ 221 (229)
|...-+.++..+-.||.++..+....+.|+ +.|=--=.+||-+|.-|
T Consensus 24 ~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 24 FAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444555666667777777776666554 33333445567666644
No 22
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=54.48 E-value=99 Score=26.17 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=8.1
Q ss_pred HHHHHHhhHHHHHHHHH
Q psy16002 77 MQELLSMREDKAELRAR 93 (229)
Q Consensus 77 mQEL~a~RE~~aeLk~~ 93 (229)
.|.+..++.++.+...-
T Consensus 23 ~q~~~~le~El~EFqes 39 (189)
T 2v71_A 23 KQSFQEARDELVEFQEG 39 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555444433
No 23
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=52.80 E-value=52 Score=22.90 Aligned_cols=43 Identities=30% Similarity=0.340 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy16002 152 LRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSE 198 (229)
Q Consensus 152 ~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~ 198 (229)
+.|.|...-|.+|++.|+.|-.-++. .-+++-|||..-..|-+
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~d----NS~~lskLE~ets~mKe 45 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELED----NSNHLTKLETEASNMKE 45 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHh----hHHHHHHHHhhhhhHHH
Confidence 35789999999999999999777654 35789999999988854
No 24
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=52.52 E-value=25 Score=22.16 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Q psy16002 72 EMAVLMQELLSMREDKAELRARIYN 96 (229)
Q Consensus 72 E~avimQEL~a~RE~~aeLk~~l~l 96 (229)
|-|-|-|||.+++.+++..+-.+-.
T Consensus 3 elaaikqelaaikkelaaikfelaa 27 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAA 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999887765543
No 25
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=52.49 E-value=44 Score=25.08 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16002 73 MAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLN 109 (229)
Q Consensus 73 ~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~ 109 (229)
+.+|+.||-.+|.++..+..++..+++..+.|...+.
T Consensus 26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~ 62 (81)
T 1wt6_A 26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVR 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999998888887766666654443
No 26
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=47.90 E-value=58 Score=21.87 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHh
Q psy16002 183 QSRLKRLENEIVIMSER-------HATQVQHLKQRIVSLEEH 217 (229)
Q Consensus 183 q~r~kKLEqQm~~M~~r-------h~~qv~~L~~~~~~LE~~ 217 (229)
++++.+||.-+..|..+ ++.--..|||||..||..
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555666655555544 444557788888888864
No 27
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=45.94 E-value=42 Score=20.98 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy16002 72 EMAVLMQELLSMREDKAELRARIYNLE 98 (229)
Q Consensus 72 E~avimQEL~a~RE~~aeLk~~l~llE 98 (229)
|-|-+-||+.+++.+++.|+-.|-.+.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888887765543
No 28
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.31 E-value=1.1e+02 Score=23.57 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=53.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH-HhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 78 QELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACE-ELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQ 156 (229)
Q Consensus 78 QEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq-~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~Q 156 (229)
+++-..|+++..|..++...+.|...|...+..-++. ..| .+....+..-|.+|.++|..
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~a--------E~~~~~ie~ElEeLTasLFe----------- 65 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKA--------EEEADKLNKEVEDLTASLFD----------- 65 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-----------
Confidence 4566778888888887777777777666555411111 111 11333444455555555433
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy16002 157 STQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIM 196 (229)
Q Consensus 157 saElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M 196 (229)
-||. .|..=++..-+.+.+..+|..|+.+.
T Consensus 66 ---------EAN~-MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 66 ---------EANN-MVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp ---------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHH-HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2333 44444777778888999999988764
No 29
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=43.31 E-value=78 Score=21.77 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q psy16002 142 TLERVSRTYELRQMQSTQLTNELKMANNALMNSFEK-GKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHI 218 (229)
Q Consensus 142 ~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~-AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~ 218 (229)
.|+..+..-..-..+....+.+|+..-..|....+| |...+..+...+-..+..|..-=..-...|...+..+++.-
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~~~~~~D 90 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIADKFRNTD 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666667777777888888888888777777 77788888888887777776666666677777777776654
No 30
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.65 E-value=45 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=12.0
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhHHHH
Q psy16002 82 SMREDKAELRARIYNLEHEKDVLEMK 107 (229)
Q Consensus 82 a~RE~~aeLk~~l~llEkEK~~lElr 107 (229)
++|-++++|+.++..+.++-..+.-+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544444444333
No 31
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=40.59 E-value=23 Score=25.95 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHhhccc
Q psy16002 166 MANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQ---HLKQRIVSLEEHIARY 221 (229)
Q Consensus 166 kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~---~L~~~~~~LE~~~~~~ 221 (229)
.+-..+-..|...-..++..+-.||.++..+....+.|+. .|=---..||-+|.-|
T Consensus 17 ~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatY 75 (86)
T 1x8y_A 17 AKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 75 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3334444456666667777788888888888877666653 3333444566666544
No 32
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=40.50 E-value=1.2e+02 Score=23.29 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHhhHHHH-------HHHHHHHHHHhhhhhHHHHHH
Q psy16002 70 DLEMAVLMQELLSMREDKA-------ELRARIYNLEHEKDVLEMKLN 109 (229)
Q Consensus 70 dLE~avimQEL~a~RE~~a-------eLk~~l~llEkEK~~lElr~~ 109 (229)
+-|++-.-.++-.+++.+. +|..+..-+..|+..|...+.
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443 344444455555555555553
No 33
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=39.46 E-value=22 Score=23.84 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=22.0
Q ss_pred cCCCCCHHHHHHHHHHHHhhH-hhhhhh
Q psy16002 13 QDRPDDKAEMQLLLNNIDKLD-KERASI 39 (229)
Q Consensus 13 ~~~~~~~ed~~rLr~yi~~Lk-~~Ra~v 39 (229)
-.++|+.|++.+|...|.+.- +.++.|
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~I 35 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADI 35 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 378999999999999998876 555554
No 34
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=38.70 E-value=1.2e+02 Score=22.45 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhH
Q psy16002 88 AELRARIYNLEHEKDVLEMKLNSLACE 114 (229)
Q Consensus 88 aeLk~~l~llEkEK~~lElr~~~~~aq 114 (229)
.++-.|++.+|-+...||.++......
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~ 35 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERS 35 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445678888888888888888754433
No 35
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=38.44 E-value=1.1e+02 Score=22.19 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHH
Q psy16002 89 ELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTL 143 (229)
Q Consensus 89 eLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~L 143 (229)
++-.|++.+|-+...||.++......... +.++...++..++.+...|
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~-------s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEK-------SQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888755444332 2333445555555444444
No 36
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=37.63 E-value=23 Score=23.13 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHhhH-hhhhhhc
Q psy16002 14 DRPDDKAEMQLLLNNIDKLD-KERASIG 40 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk-~~Ra~vk 40 (229)
-++|+.|++..|...|...- +..+.|-
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia 29 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKIL 29 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 46899999999999999875 4666553
No 37
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=37.20 E-value=2.9e+02 Score=26.64 Aligned_cols=128 Identities=17% Similarity=0.271 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHhhHHHHH--HHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16002 71 LEMAVLMQELLSMREDKAE--LRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSR 148 (229)
Q Consensus 71 LE~avimQEL~a~RE~~ae--Lk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k 148 (229)
.......|+-+.-++...+ |.+-..+.++||...+.|..+-.|+.++ ..|.++..++-..+++-.+
T Consensus 455 ~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~------------~~l~~~~~~~~~~~~~~~~ 522 (592)
T 1f5n_A 455 IQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASA------------KMLHEMQRKNEQMMEQKER 522 (592)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 4555677778887777777 5555667788888888887766666554 2344444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q psy16002 149 TYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIA 219 (229)
Q Consensus 149 ~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~~~LE~~~~ 219 (229)
..++.-.|+.+ ++..-...+..=.+++- -.||.-|-..|.+-...+.+.|...|..|.....
T Consensus 523 ~~~e~~~ql~~---kme~~~~~~~~e~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 523 SYQEHLKQLTE---KMENDRVQLLKEQERTL------ALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55554444433 33333322221111110 1244555566777777777788888888877643
No 38
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=36.84 E-value=53 Score=24.71 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=31.6
Q ss_pred HHHHhhhHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHhhccc
Q psy16002 162 NELKMANNALMNSFEK-------GKKKSQSRLKRLENEIVIMSERHATQV---QHLKQRIVSLEEHIARY 221 (229)
Q Consensus 162 ~dL~kAnsaLv~afe~-------AKrK~q~r~kKLEqQm~~M~~rh~~qv---~~L~~~~~~LE~~~~~~ 221 (229)
..|++-|.+|-..+.- .-..++..+-.||.++..+...-+.|+ +.|----..||-+|.-|
T Consensus 15 ~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 15 FQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544443 444455666667777777766555554 33334445677766654
No 39
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=35.97 E-value=1.2e+02 Score=21.93 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy16002 131 KLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMS 197 (229)
Q Consensus 131 ~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~ 197 (229)
.|+.++..|.. -...=+.+...-.+..+++-..|..-+...=+-||-|+.++-+++.|+..|+
T Consensus 10 ~Lr~~~d~L~k----kq~~L~~~i~~e~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE 72 (79)
T 4abm_A 10 RLRDTEEMLSK----KQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIE 72 (79)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45555544443 3333333444555666666666665555555668889999999999887765
No 40
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.61 E-value=5.1e+02 Score=30.52 Aligned_cols=63 Identities=10% Similarity=0.231 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy16002 135 RLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSE 198 (229)
Q Consensus 135 rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~ 198 (229)
+|+.|...++...+..+.-..+....-..|.+|+ .|+.++-+=|.+-....+.|+.++..+.-
T Consensus 2043 ~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~-~Li~gL~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2043 SIATYKEEYATLIRETEQIKTESSKVKNKVDRSI-ALLDNLNSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhccccHHHHHHHHHHHHHhccH
Confidence 3444444444433333333333333333344443 57788888888888888888887766543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.05 E-value=2.6e+02 Score=25.47 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=18.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy16002 76 LMQELLSMREDKAELRARIYNLEHEKDVLEMKLNS 110 (229)
Q Consensus 76 imQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~ 110 (229)
+++|+-.+++.+..|+.++...++....++..+.+
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~ 488 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT 488 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555555555555555555555555444443
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.84 E-value=78 Score=21.85 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhH
Q psy16002 72 EMAVLMQELLSMREDKAELRARIYNLEHEKDVL 104 (229)
Q Consensus 72 E~avimQEL~a~RE~~aeLk~~l~llEkEK~~l 104 (229)
+..-+.++.-.+..++.+|+.++..++.|...|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777788888888888888777665
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=34.20 E-value=1.4e+02 Score=22.14 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=12.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhH
Q psy16002 79 ELLSMREDKAELRARIYNLEHEKDVL 104 (229)
Q Consensus 79 EL~a~RE~~aeLk~~l~llEkEK~~l 104 (229)
|+-+.++.+..|....+.+...+..+
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L 53 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREEL 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44445555555555444444333333
No 44
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=34.05 E-value=1.2e+02 Score=21.22 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 129 ENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELK 165 (229)
Q Consensus 129 e~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~ 165 (229)
...++.++..|...++.+...+..|.....+...++.
T Consensus 80 ~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~Q 116 (119)
T 3uun_A 80 ETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888777766655543
No 45
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=33.83 E-value=27 Score=22.50 Aligned_cols=26 Identities=12% Similarity=0.067 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHhhHh-hhhhh
Q psy16002 14 DRPDDKAEMQLLLNNIDKLDK-ERASI 39 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk~-~Ra~v 39 (229)
.++|+.|++..|...|...-. ..+.|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~I 29 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVI 29 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 479999999999999987654 45444
No 46
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=32.60 E-value=1.3e+02 Score=21.16 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 129 ENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELK 165 (229)
Q Consensus 129 e~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~ 165 (229)
...++.++.+|...++.+...+..|.....+-...+.
T Consensus 80 ~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~~Q 116 (118)
T 3uul_A 80 EFEIQEQMTLLNARWEALRVESMERQSRLHDALMELQ 116 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888888888888888877766555543
No 47
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.17 E-value=1.4e+02 Score=23.02 Aligned_cols=32 Identities=34% Similarity=0.392 Sum_probs=18.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy16002 79 ELLSMREDKAELRARIYNLEHEKDVLEMKLNS 110 (229)
Q Consensus 79 EL~a~RE~~aeLk~~l~llEkEK~~lElr~~~ 110 (229)
++-..|..+..|..--.-+++++..||.++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555566666666666653
No 48
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=29.71 E-value=37 Score=23.43 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=22.7
Q ss_pred cCCCCCHHHHHHHHHHHHhhH-hhhhhhc
Q psy16002 13 QDRPDDKAEMQLLLNNIDKLD-KERASIG 40 (229)
Q Consensus 13 ~~~~~~~ed~~rLr~yi~~Lk-~~Ra~vk 40 (229)
.-++|+.|++..|...|.+.- +.++.|-
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia 38 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAIS 38 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHH
Confidence 456999999999999999885 4676663
No 49
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=28.99 E-value=3.9e+02 Score=25.55 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 122 DTDDKSV-ENKLRERLKEMSQTLERVSRTYELRQMQ 156 (229)
Q Consensus 122 lt~~lsR-e~~Lk~rlqeL~~~Le~~~k~~e~r~~Q 156 (229)
+.+.|.+ +...+..|++|-..|+++...+-.-.+-
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~ 117 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQY 117 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 4556665 7788899999999999998887765543
No 50
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=28.04 E-value=38 Score=22.47 Aligned_cols=27 Identities=7% Similarity=0.004 Sum_probs=21.4
Q ss_pred cCCCCCHHHHHHHHHHHHhhH-hhhhhh
Q psy16002 13 QDRPDDKAEMQLLLNNIDKLD-KERASI 39 (229)
Q Consensus 13 ~~~~~~~ed~~rLr~yi~~Lk-~~Ra~v 39 (229)
..++|+.|++..|...|...- ..++.|
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~I 34 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFL 34 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 356999999999999998876 355554
No 51
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.12 E-value=2.1e+02 Score=21.86 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=18.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q psy16002 79 ELLSMREDKAELRARIYNLEHEKDVLEMKLNSLAC 113 (229)
Q Consensus 79 EL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~a 113 (229)
|+..+|-.+..|...|.-+..-+..||-.+.....
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555543333
No 52
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=27.08 E-value=36 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHhhHhhhhhh
Q psy16002 14 DRPDDKAEMQLLLNNIDKLDKERASI 39 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk~~Ra~v 39 (229)
.++|+.|++..|...|..+-..++.|
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~I 48 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATI 48 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHH
Confidence 46999999999999998877666655
No 53
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=26.36 E-value=49 Score=21.23 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHHHHhhHh-hhhhh
Q psy16002 14 DRPDDKAEMQLLLNNIDKLDK-ERASI 39 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk~-~Ra~v 39 (229)
.++|+.|++..|...|...-. ..+.|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~I 29 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVI 29 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHH
Confidence 579999999999999987643 34444
No 54
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.27 E-value=90 Score=20.36 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.0
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhhHHHH
Q psy16002 80 LLSMREDKAELRARIYNLEHEKDVLEMK 107 (229)
Q Consensus 80 L~a~RE~~aeLk~~l~llEkEK~~lElr 107 (229)
|-.+||++..|..++.-+..||--|=++
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4568999999999999999999776443
No 55
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.36 E-value=43 Score=22.43 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=21.7
Q ss_pred cCCCCCHHHHHHHHHHHHhhH-hhhhhh
Q psy16002 13 QDRPDDKAEMQLLLNNIDKLD-KERASI 39 (229)
Q Consensus 13 ~~~~~~~ed~~rLr~yi~~Lk-~~Ra~v 39 (229)
..++|+.|++..|...|...- +.++.|
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~I 34 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDV 34 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 367999999999999998876 456554
No 56
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=25.24 E-value=44 Score=22.89 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHhhH-hhhhhhc
Q psy16002 14 DRPDDKAEMQLLLNNIDKLD-KERASIG 40 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk-~~Ra~vk 40 (229)
-++|+.|++..|...|...- +.++.|-
T Consensus 10 r~~WT~eED~~L~~~v~~~G~~~W~~Ia 37 (69)
T 1ity_A 10 RQAWLWEEDKNLRSGVRKYGEGNWSKIL 37 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 46999999999999999885 4666653
No 57
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.08 E-value=2.5e+02 Score=21.59 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=16.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16002 79 ELLSMREDKAELRARIYNLEHEKDVLEMKLNSLA 112 (229)
Q Consensus 79 EL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~ 112 (229)
|+..+|-.+..|...|.-+..-+..||-.+....
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e 72 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETK 72 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444555555555555555555554333
No 58
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.02 E-value=58 Score=22.50 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHhhH------hhhhhh
Q psy16002 14 DRPDDKAEMQLLLNNIDKLD------KERASI 39 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk------~~Ra~v 39 (229)
.++|+.|++..|...|...- .+++.|
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~I 39 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKI 39 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHH
Confidence 56999999999999998876 566655
No 59
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.98 E-value=50 Score=22.30 Aligned_cols=28 Identities=14% Similarity=0.117 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHhhHhhhhhhcc
Q psy16002 14 DRPDDKAEMQLLLNNIDKLDKERASIGN 41 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk~~Ra~vk~ 41 (229)
.++|+.|++..|...|...-..++.|--
T Consensus 9 k~~WT~eED~~L~~~~~~~g~~W~~Ia~ 36 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPTQWRTIAP 36 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHhc
Confidence 4699999999999998877766666543
No 60
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.75 E-value=47 Score=22.73 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=21.1
Q ss_pred cCCCCCHHHHHHHHHHHHhhH-hhhhhh
Q psy16002 13 QDRPDDKAEMQLLLNNIDKLD-KERASI 39 (229)
Q Consensus 13 ~~~~~~~ed~~rLr~yi~~Lk-~~Ra~v 39 (229)
..++|+.|++..|...|...- ...+.|
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~I 35 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRI 35 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 356999999999999998775 455544
No 61
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.49 E-value=2.5e+02 Score=21.43 Aligned_cols=98 Identities=24% Similarity=0.405 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 85 EDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNEL 164 (229)
Q Consensus 85 E~~aeLk~~l~llEkEK~~lElr~~~~~aq~~aq~a~lt~~lsRe~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL 164 (229)
.++.+|+.+|..+..|+..+++.+.+. +..+ .++|.+..+-. ...+++| +|+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~--~~~~------------edfk~KyE~E~------------~~r~~~E--~di 71 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNL--AEDI------------MRLREKLQEEM------------LQREEAE--NTL 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------------HHHHHHHHHHH------------HHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------------HHHHHhhHHHH------------HHHHHHH--HHH
Confidence 357889999999999999999888733 2222 12222222111 1112222 122
Q ss_pred HhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16002 165 KMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRI 211 (229)
Q Consensus 165 ~kAnsaLv~afe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~~L~~~~ 211 (229)
......+ ...--++=-.+.++.-|..+|.-|..-|.+++..|...|
T Consensus 72 ~~lrK~l-D~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 72 QSFRQDV-DNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHhhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2111111 111223444677888888888888888998888876543
No 62
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.49 E-value=1.4e+02 Score=22.14 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16002 73 MAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLN 109 (229)
Q Consensus 73 ~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~ 109 (229)
...+.+....+..+++.|+.+|..+++|-..|---+.
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888899999999988888776654443
No 63
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=22.47 E-value=2.4e+02 Score=20.92 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhh
Q psy16002 72 EMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELT 117 (229)
Q Consensus 72 E~avimQEL~a~RE~~aeLk~~l~llEkEK~~lElr~~~~~aq~~a 117 (229)
|...+..+|..+..+-+.|...|..+++|+..+...+.+..++...
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~ 50 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAER 50 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5567788999999999999999999999999998888766665554
No 64
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.85 E-value=3.5e+02 Score=25.38 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=26.7
Q ss_pred CCchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16002 122 DTDDKSV-ENKLRERLKEMSQTLERVSRTYELRQMQ 156 (229)
Q Consensus 122 lt~~lsR-e~~Lk~rlqeL~~~Le~~~k~~e~r~~Q 156 (229)
+.+.+.+ +...+..|++|...|+++...+-.-.+.
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~ 60 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQL 60 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 3445555 7788889999999999998888765543
No 65
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.74 E-value=2.4e+02 Score=20.23 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=31.8
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHhhccc
Q psy16002 175 FEKGKKKSQSRLKRLENEIVIMSERHATQVQ---HLKQRIVSLEEHIARY 221 (229)
Q Consensus 175 fe~AKrK~q~r~kKLEqQm~~M~~rh~~qv~---~L~~~~~~LE~~~~~~ 221 (229)
|++-...++..+-.||.++..+....+.|+. .|=---..||-+|.-|
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677888999999999988887776653 3333334566666543
No 66
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.43 E-value=75 Score=23.63 Aligned_cols=31 Identities=32% Similarity=0.384 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q psy16002 70 DLEMAVLMQELLSMREDKAELRARIYNLEHE 100 (229)
Q Consensus 70 dLE~avimQEL~a~RE~~aeLk~~l~llEkE 100 (229)
-=|..++..||.+.++.+..+..++..+|.|
T Consensus 43 t~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 43 TCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666666655
No 67
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=20.42 E-value=60 Score=24.76 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHHHHhhH-hhhhhh
Q psy16002 14 DRPDDKAEMQLLLNNIDKLD-KERASI 39 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk-~~Ra~v 39 (229)
.++|+.|++..|..+|..-- +....|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~I 28 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRI 28 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 47899999999999998764 344444
No 68
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=20.40 E-value=59 Score=23.75 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHhhHh-hhhhhcc
Q psy16002 15 RPDDKAEMQLLLNNIDKLDK-ERASIGN 41 (229)
Q Consensus 15 ~~~~~ed~~rLr~yi~~Lk~-~Ra~vk~ 41 (229)
++|+.|++..|...|++.-. .++.|.-
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~ 28 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKM 28 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHH
Confidence 58999999999999998864 7777654
Done!