Query psy16002
Match_columns 229
No_of_seqs 37 out of 39
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 18:27:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16002.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16002hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efka1 a.238.1.4 (A:10-288) C 53.0 28 0.002 26.2 8.0 55 137-191 87-141 (279)
2 d1gvda_ a.4.1.3 (A:) c-Myb, DN 51.2 4.7 0.00034 25.4 2.5 26 14-39 3-29 (52)
3 d1gv2a2 a.4.1.3 (A:144-190) c- 51.0 4.7 0.00034 25.0 2.5 27 15-41 2-28 (47)
4 d1w0ta_ a.4.1.4 (A:) DNA-bindi 44.2 8.4 0.00061 24.1 2.9 27 14-40 2-29 (52)
5 d1x41a1 a.4.1.1 (A:8-54) Trans 39.8 9.8 0.00071 23.3 2.7 26 14-39 1-27 (47)
6 d2efla1 a.238.1.4 (A:1-288) Fo 37.3 75 0.0055 23.6 9.7 62 130-191 88-150 (288)
7 d1w0ua_ a.4.1.4 (A:) Telomeric 36.3 12 0.00087 23.5 2.7 27 14-40 2-29 (55)
8 d1wu9a1 a.245.1.1 (A:191-249) 30.1 25 0.0018 23.1 3.6 38 79-116 2-41 (59)
9 d2ckxa1 a.4.1.3 (A:578-660) Te 29.5 17 0.0012 24.6 2.7 26 15-40 1-27 (83)
10 d1wrda1 a.7.8.1 (A:215-307) Ta 28.9 47 0.0034 22.7 5.1 42 128-181 46-87 (93)
11 d1guua_ a.4.1.3 (A:) c-Myb, DN 28.8 19 0.0014 22.0 2.7 26 15-40 2-28 (50)
12 d1tqga_ a.24.10.3 (A:) Chemota 21.5 35 0.0025 22.9 3.2 43 2-44 18-60 (105)
No 1
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.01 E-value=28 Score=26.20 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHH
Q psy16002 137 KEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLEN 191 (229)
Q Consensus 137 qeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEq 191 (229)
.++...|.....+.+..+....+.+..+.+........++++|++|....+.+|.
T Consensus 87 ~~i~~~l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~ 141 (279)
T d2efka1 87 VRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEK 141 (279)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 2
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.19 E-value=4.7 Score=25.38 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHhhH-hhhhhh
Q psy16002 14 DRPDDKAEMQLLLNNIDKLD-KERASI 39 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk-~~Ra~v 39 (229)
.++|+.|++..|+..|.... +..+.|
T Consensus 3 rg~WT~eED~~L~~~v~~~g~~~W~~I 29 (52)
T d1gvda_ 3 KGPWTKEEDQRLIKLVQKYGPKRWSVI 29 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 47999999999999999875 455555
No 3
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.99 E-value=4.7 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHhhHhhhhhhcc
Q psy16002 15 RPDDKAEMQLLLNNIDKLDKERASIGN 41 (229)
Q Consensus 15 ~~~~~ed~~rLr~yi~~Lk~~Ra~vk~ 41 (229)
.+|+.|++..|..+|...-..++.|-.
T Consensus 2 ~~WT~eED~~L~~~v~~~G~~W~~Ia~ 28 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHKRLGNRWAEIAK 28 (47)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHh
Confidence 589999999999999999888887754
No 4
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.22 E-value=8.4 Score=24.07 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHhhH-hhhhhhc
Q psy16002 14 DRPDDKAEMQLLLNNIDKLD-KERASIG 40 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk-~~Ra~vk 40 (229)
-++|+.|++..|...|.+-- +..+.|.
T Consensus 2 r~~WT~eED~~L~~~v~~~G~~~W~~I~ 29 (52)
T d1w0ta_ 2 RQAWLWEEDKNLRSGVRKYGEGNWSKIL 29 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 47999999999999999985 4677774
No 5
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.81 E-value=9.8 Score=23.29 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHHHhhH-hhhhhh
Q psy16002 14 DRPDDKAEMQLLLNNIDKLD-KERASI 39 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk-~~Ra~v 39 (229)
|.+|+.+++.+|...|++.- +....|
T Consensus 1 d~~Wt~eEd~~L~~~v~~~G~~nW~~I 27 (47)
T d1x41a1 1 DPSWTAQEEMALLEAVMDCGFGNWQDV 27 (47)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHCCccHHHH
Confidence 56799999999999998763 445444
No 6
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.30 E-value=75 Score=23.62 Aligned_cols=62 Identities=10% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHH
Q psy16002 130 NKLRERL-KEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLEN 191 (229)
Q Consensus 130 ~~Lk~rl-qeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK~q~r~kKLEq 191 (229)
..+-..| .++...|....+.-+..+....+....+.+........++++|++|....+.+|.
T Consensus 88 ~~~a~~l~~~i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~ 150 (288)
T d2efla1 88 EVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADR 150 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 7
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.28 E-value=12 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHhhH-hhhhhhc
Q psy16002 14 DRPDDKAEMQLLLNNIDKLD-KERASIG 40 (229)
Q Consensus 14 ~~~~~~ed~~rLr~yi~~Lk-~~Ra~vk 40 (229)
-++||.+++..|...|.+-- +..+.|.
T Consensus 2 r~~WT~eEd~~L~~~V~~~G~~~W~~I~ 29 (55)
T d1w0ua_ 2 KQKWTVEESEWVKAGVQKYGEGNWAAIS 29 (55)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 36899999999999999884 5677764
No 8
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.14 E-value=25 Score=23.10 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=27.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhH--HHHHHHHHhHHh
Q psy16002 79 ELLSMREDKAELRARIYNLEHEKDVL--EMKLNSLACEEL 116 (229)
Q Consensus 79 EL~a~RE~~aeLk~~l~llEkEK~~l--Elr~~~~~aq~~ 116 (229)
|+.++.+++.+|+..+.-+|||+.-- .||.--.-||.+
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~KLRdIEilcQ~~ 41 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQEN 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 46778889999999999999998643 344434455544
No 9
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=29.50 E-value=17 Score=24.59 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHhhH-hhhhhhc
Q psy16002 15 RPDDKAEMQLLLNNIDKLD-KERASIG 40 (229)
Q Consensus 15 ~~~~~ed~~rLr~yi~~Lk-~~Ra~vk 40 (229)
++|+.|++..|..+|.+.- +..+.|.
T Consensus 1 r~WT~eEd~~L~~~V~~~G~~~W~~I~ 27 (83)
T d2ckxa1 1 RPFSVAEVEALVEAVEHLGTGRWRDVK 27 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 6899999999999999885 4677774
No 10
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.90 E-value=47 Score=22.68 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhh
Q psy16002 128 VENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKK 181 (229)
Q Consensus 128 Re~~Lk~rlqeL~~~Le~~~k~~e~r~~QsaElv~dL~kAnsaLv~afe~AKrK 181 (229)
++..++-+|+.|....+ ..+++.+|..+|..|..+|.+=.|-
T Consensus 46 ~C~~~q~~i~~li~~~~------------dee~l~~lL~~ND~L~~vl~ry~r~ 87 (93)
T d1wrda1 46 TCRAMQQRVLELIPQIA------------NEQLTEELLIVNDNLNNVFLRHERF 87 (93)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcC------------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677776664332 4578999999999999999875543
No 11
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.84 E-value=19 Score=21.96 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHhhH-hhhhhhc
Q psy16002 15 RPDDKAEMQLLLNNIDKLD-KERASIG 40 (229)
Q Consensus 15 ~~~~~ed~~rLr~yi~~Lk-~~Ra~vk 40 (229)
+.|+.|++..|...|++.. +..+.|-
T Consensus 2 ~~WT~eED~~L~~~v~~~g~~~W~~Ia 28 (50)
T d1guua_ 2 TRWTREEDEKLKKLVEQNGTDDWKVIA 28 (50)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 5799999999999999874 4455553
No 12
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.47 E-value=35 Score=22.94 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=37.4
Q ss_pred hhhHHHHhhhccCCCCCHHHHHHHHHHHHhhHhhhhhhccCcc
Q psy16002 2 LETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTV 44 (229)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ed~~rLr~yi~~Lk~~Ra~vk~t~v 44 (229)
++.....|.-|...+.+.+..+.|...++.|||--+.+++.++
T Consensus 18 l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i 60 (105)
T d1tqga_ 18 LQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSM 60 (105)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHH
Confidence 3556677888888888999999999999999999999999885
Done!