RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16002
(229 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 44.4 bits (105), Expect = 2e-05
Identities = 26/156 (16%), Positives = 65/156 (41%), Gaps = 4/156 (2%)
Query: 67 RKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDK 126
+K+ LE ++ M +D + + L E+ +LE +++ L + +
Sbjct: 972 QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031
Query: 127 SVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRL 186
++NK + E+ L++ ++ + + +L E + + + + +++L
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA-ELQAQIAELKAQL 1090
Query: 187 KRLENEIVIMS---ERHATQVQHLKQRIVSLEEHIA 219
+ E E+ E +Q + ++I LE HI+
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126
Score = 42.1 bits (99), Expect = 8e-05
Identities = 30/153 (19%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 64 SEARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDT 123
+ +KM+ ++ ++ + + +++ L R+ +L E K +L + +H
Sbjct: 983 GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT-KLKNKHESMI 1041
Query: 124 DDKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQ 183
+ +E +L ++ ++ Q LE++ R E + EL+ L K +++ Q
Sbjct: 1042 SE--LEVRL-KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098
Query: 184 SRLKRLENEIVIMSERHATQVQHLKQRIVSLEE 216
+ L RLE+E +++ L+ I L+E
Sbjct: 1099 AALARLEDE-TSQKNNALKKIRELESHISDLQE 1130
Score = 39.4 bits (92), Expect = 7e-04
Identities = 31/213 (14%), Positives = 77/213 (36%), Gaps = 14/213 (6%)
Query: 12 LQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDL 71
L + EMQ + + + + +LE H + E + + +A
Sbjct: 849 LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 72 EMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENK 131
A M+ L+ + K EL ++ +E + E + ++L + ++
Sbjct: 909 AEAEEMRVRLAAK--KQELEEILHEMEARIEEEEERS-----QQLQAEKKKMQQQMLD-- 959
Query: 132 LRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLEN 191
L E+L+E +++ + ++ +++ + + N K +K + R+ L
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN-NKLTKERKLLEERVSDLTT 1018
Query: 192 EIVIMSERHATQVQHLKQRIVSLEEHIARYNSK 224
+ E + ++L + E I+ +
Sbjct: 1019 NLAEEEE----KAKNLTKLKNKHESMISELEVR 1047
Score = 27.9 bits (62), Expect = 4.0
Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 16/147 (10%)
Query: 19 KAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSSEARKMDLEMAVLMQ 78
+ Q L KL+ E + + +L++ + ++ K E + +
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA--QLAKKEEELQAALARLEDETS 1109
Query: 79 ELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKE 138
+ + + EL + I +L+ + + + N + + L E L+
Sbjct: 1110 QKNNALKKIRELESHISDLQEDLESEKAARNKA--------------EKQKRDLSEELEA 1155
Query: 139 MSQTLERVSRTYELRQMQSTQLTNELK 165
+ LE T +Q +
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDDD 1182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 2e-04
Identities = 39/259 (15%), Positives = 75/259 (28%), Gaps = 64/259 (24%)
Query: 3 ETYKVLLHTLQDRPDDKAEMQLL-LNN------IDKLDKE-------R-ASIGNTTVKLE 47
L L+ +P + LL L N + + R + +
Sbjct: 229 SIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 48 SYHVAISEAPKV--PKSSSE--ARKMDLEMAVLMQE-------LLSM-----REDKAEL- 90
+ H+++ P + +D L +E LS+ R+ A
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 91 RARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQTLERV---S 147
+ N + ++E LN L E + D SV + L +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKM---FDRLSV---FPPSAHIPTILLSLIWFDV 399
Query: 148 RTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHL 207
++ + N+L +L+ EK K+S + I + + L
Sbjct: 400 IKSDVMVV-----VNKL--HKYSLV---EKQPKESTISI----PSIYLELKVKLENEYAL 445
Query: 208 KQRIVSLEEHIARYNSKER 226
+ I + YN +
Sbjct: 446 HRSI------VDHYNIPKT 458
Score = 40.2 bits (93), Expect = 4e-04
Identities = 22/143 (15%), Positives = 52/143 (36%), Gaps = 26/143 (18%)
Query: 99 HEKDVLEMKLNSLACEELTQH-----AGDTDDKSVENKLR-----ERLKEMSQTLERVSR 148
H D E + +++ + D K V++ + E + + + + VS
Sbjct: 5 HHMD-FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 149 TYEL----RQMQSTQ----LTNELKMANNALMNSF-EKGKKKS------QSRLKRLENEI 193
T L Q + L++ LM+ + ++ S + RL N+
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 194 VIMSERHATQVQHLKQRIVSLEE 216
+ ++ + +++Q + +L E
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLE 146
Score = 33.3 bits (75), Expect = 0.069
Identities = 32/225 (14%), Positives = 64/225 (28%), Gaps = 79/225 (35%)
Query: 5 YKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPKSSS 64
YK L+ ++ + ++R + N Y+V+
Sbjct: 91 YKFLMSPIKTEQRQPSM------MTRMYIEQRDRLYNDNQVFAKYNVS------------ 132
Query: 65 EARKMDLEMAVLMQELLSMREDK-AELRARIYNLEHEKDV-LE-M----KLNSLACEELT 117
R +LR + L K+V ++ + K +A +
Sbjct: 133 -------------------RLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVC- 171
Query: 118 QHAGDTDDKSVENKL--------------RERLKEMSQTLERVSRTYELRQMQSTQLTNE 163
V+ K+ E + EM Q L L Q+ +
Sbjct: 172 ------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--------LYQIDPNWTSRS 217
Query: 164 LKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLK 208
+N L + + + + K EN ++++ VQ+ K
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-----VQNAK 257
Score = 26.4 bits (57), Expect = 9.9
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 26/110 (23%)
Query: 10 HTLQDRPDDKAEM--QLLLN---------NIDKLDKERASIGNTTVKLESY--HVAISEA 56
H ++ + + L+ + SI NT +L+ Y ++ ++
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 57 -------------PKVPKSSSEARKMDLEMAVLMQELLSMREDKAELRAR 93
PK+ ++ ++ DL LM E ++ E+ + R
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.002
Identities = 42/277 (15%), Positives = 83/277 (29%), Gaps = 94/277 (33%)
Query: 1 MLETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASI-------GNTTV------KL- 46
+++ Y RP DK L + + A + GNT L
Sbjct: 122 LIKNYITARIMA-KRPFDKKSNSALFRAVGE---GNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 47 ESYHVAISEAPKVPKSSSEARKMDL--EMAVLMQELLSMREDKAELRARIYNLE------ 98
++YHV + DL A + EL+ D ++ + N+
Sbjct: 178 QTYHVLVG---------------DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 99 ---HEKDVLE-----MKLNSL--------ACEELTQHAGDTDDKSVENKLRERLKEMSQT 142
+KD L L + + L G+ LR LK +
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE---------LRSYLKGATGH 273
Query: 143 LERV--------SRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQS-RLKRLENEI 193
+ + + ++E + A+ F G + ++ L I
Sbjct: 274 SQGLVTAVAIAETDSWE----------SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 194 VIMSERH----AT---QVQHLKQRIVSLEEHIARYNS 223
+ S + + + +L Q +++++ + NS
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQE--QVQDYVNKTNS 358
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 38.2 bits (89), Expect = 0.002
Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 19/156 (12%)
Query: 65 EARKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTD 124
EAR ++ + + + +L+ +I E L K+N+L
Sbjct: 912 EARSVERYKKLHIG----LENKIMQLQRKIDEQNKEYKSLLEKMNNL------------- 954
Query: 125 DKSVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQS 184
+ + E+L+ + L + + L E+ L + + KK +
Sbjct: 955 -EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL-HQTQTEKKTIEE 1012
Query: 185 RLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIAR 220
+ ++E + Q LK L I
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048
Score = 33.5 bits (77), Expect = 0.054
Identities = 20/163 (12%), Positives = 59/163 (36%), Gaps = 15/163 (9%)
Query: 67 RKMDLEMAVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDK 126
+ ++++Q+ + + + + + + + ++L
Sbjct: 860 MMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKL---------- 909
Query: 127 SVENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRL 186
+E + ER K++ LE + + + + L N L ++ +K +S +
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 187 KRLENEIVIMSERHAT--QVQHLKQRIVSLEEHIARYNSKERN 227
+RL E +V L++ I L + + + ++++
Sbjct: 970 ERLRMS---EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Score = 27.0 bits (60), Expect = 7.2
Identities = 33/264 (12%), Positives = 84/264 (31%), Gaps = 42/264 (15%)
Query: 2 LETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEAPKVPK 61
Y+VL+ D K + +L + LDK++ G T + + VA E + K
Sbjct: 708 FSRYRVLMKQKDVLSDRKQTCKNVLEKLI-LDKDKYQFGKTKIFFRAGQVAYLEKIRADK 766
Query: 62 SSSEA------------RKMDLEM----------------------------AVLMQELL 81
+ RK + M A+++Q+
Sbjct: 767 LRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQ 826
Query: 82 SMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERLKEMSQ 141
M + + + +L L + + + + R+
Sbjct: 827 RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT 886
Query: 142 TLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHA 201
V R+M + + +LK+ ++ ++K ++++ +L+ +I ++ +
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEARSV-ERYKKLHIGLENKIMQLQRKIDEQNKEYK 945
Query: 202 TQVQHLKQRIVSLEEHIARYNSKE 225
+ ++ + ++ + S
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDV 969
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 29.6 bits (67), Expect = 1.0
Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 10/143 (6%)
Query: 74 AVLMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLR 133
++ + + + K L R + +++S + +E K +
Sbjct: 815 VSELEAIYNSLQTKLRLIKREPFVAPAGLTPN-EIDSTWSALEKAEQEHAEALRIELKRQ 873
Query: 134 ERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKRLENEI 193
+++ + Q R+ + E + + Q++LK LE
Sbjct: 874 KKIAVLLQKYNRILKKLENWATTKSVYLGSNET---------GDSITAVQAKLKNLEAFD 924
Query: 194 VIMSERHATQVQHLKQRIVSLEE 216
L + L E
Sbjct: 925 GECQSLEGQSNSDLLSILAQLTE 947
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.3 bits (65), Expect = 1.1
Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 129 ENKLRERLKEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFEKGKKKSQSRLKR 188
+L+++ +EM Q + + E ++ + EL + L + KKK + + K
Sbjct: 332 LGELQKKEEEMRQMFVQRVKEKEAELKEAEK---ELHEKFDRLKKLHQDEKKKLEDKKKS 388
Query: 189 LENEIVIMSERHATQVQHLKQRIVSLEEHIARYNSKERN 227
L++E+ +R Q + + + +++N
Sbjct: 389 LDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKKN 427
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros
picked threonine kinase, SGC, structural genomics
consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB:
3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Length = 313
Score = 28.8 bits (65), Expect = 1.6
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 179 KKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHI 218
++ L NEI ++ ++Q +I+ L ++
Sbjct: 63 EEADNQTLDSYRNEIAYLN-----KLQQHSDKIIRLYDYE 97
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 1.7
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 76 LMQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRER 135
L QE S+R+ + E R R+ L+ V+E + A ++L + ++ +NK+ R
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 136 LKE 138
+ +
Sbjct: 140 IAD 142
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.1
Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 1/13 (7%)
Query: 176 EKGK-KKSQSRLK 187
EK KK Q+ LK
Sbjct: 18 EKQALKKLQASLK 30
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 28.3 bits (63), Expect = 2.3
Identities = 9/59 (15%), Positives = 25/59 (42%)
Query: 162 NELKMANNALMNSFEKGKKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHIAR 220
N+ ++ + + E +++ + +E I + + ++ Q L Q I L + +
Sbjct: 30 NKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKK 88
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase
activation, phosphorylation, ATP- binding,
nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Length = 343
Score = 27.7 bits (62), Expect = 2.8
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 179 KKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHI 218
++ L NEI ++ ++Q +I+ L ++
Sbjct: 44 EEADNQTLDSYRNEIAYLN-----KLQQHSDKIIRLYDYE 78
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 27.6 bits (62), Expect = 3.1
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 179 KKKSQSRLKRLENEIVIMSERHATQVQHLKQR-IVSLEE 216
K +SQ ++++E EI ++ + L I+ + E
Sbjct: 57 KDRSQVPMEQIEAEIEVL--------KSLDHPNIIKIFE 87
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins,
DNA breaks, DOUB stranded, DNA repair, DNA repair
enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB:
3qg5_C
Length = 379
Score = 27.8 bits (62), Expect = 3.2
Identities = 13/121 (10%), Positives = 44/121 (36%), Gaps = 18/121 (14%)
Query: 77 MQELLSMREDKAELRARIYNLEHEKDVLEMKLNSLACEELTQHAGDTDDKSVENKLRERL 136
++ L + D + L++ + + + + +D + L +
Sbjct: 266 LKTLYYKKIDTSALKSIRDSCRNFPGYVRVVY--------------EEDSGILPDLMGEI 311
Query: 137 KEMSQTLERVSRTYELRQMQSTQLTNELKMANNALMNSFE---KGKKKSQSRLKRLENEI 193
+ + + R E +S + E ++ F+ K ++++ +L ++ +E+
Sbjct: 312 DNLVKIERKSRREIEEVLRESPEEFKE-ELDKLDYFELFKEYLKKREENHEKLLKILDEL 370
Query: 194 V 194
+
Sbjct: 371 L 371
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 27.5 bits (61), Expect = 3.6
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 179 KKKSQSRLKRLENEIVIMSERHATQVQHLKQRIVSLEEHI 218
++ L NEI ++ ++Q +I+ L ++
Sbjct: 91 EEADNQTLDSYRNEIAYLN-----KLQQHSDKIIRLYDYE 125
>2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus
influenzae; hypothetical protein, structural genomics,
PSI; 3.00A {Clostridium acetobutylicum} SCOP: c.147.1.1
Length = 306
Score = 26.6 bits (58), Expect = 8.0
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 173 NSFEKGKKKSQSRLKRL--ENEIVIMSERHATQVQHLKQ 209
SF + K R R+ +N V M + + + +K+
Sbjct: 194 ASFAEAKNDWDERKTRINKKNLFVKMLIKDDNE-KLVKR 231
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase,
kinase, membrane, ATP-binding, prenylation,
serine/threonine-protein kinase, alternative splicing;
HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Length = 304
Score = 26.4 bits (59), Expect = 9.4
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 179 KKKSQSRLKRLENEIVIMSERHATQVQHLKQR-IVSLEE 216
KK R LENEI ++ + +K IV+LE+
Sbjct: 43 KKSPAFRDSSLENEIAVL--------KKIKHENIVTLED 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.124 0.317
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,101,503
Number of extensions: 175252
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 109
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.1 bits)