RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16002
         (229 letters)



>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 305

 Score = 27.9 bits (62), Expect = 1.1
 Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)

Query: 173 NSFEKGKKKSQSRLKRL--ENEIVIMSER 199
            SF + K     R  R+  +N  V M  +
Sbjct: 194 ASFAEAKNDWDERKTRINKKNLFVKMLIK 222


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 27.4 bits (60), Expect = 2.0
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 2   LETYKVLLHTLQDRPDDKAEMQLLLNNIDKLDKERASIGNTTVKLESYHVAISEA 56
              Y+VL+       D K   + +L  +  LDK++   G T +   +  VA  E 
Sbjct: 646 FSRYRVLMKQKDVLSDRKQTCKNVLEKLI-LDKDKYQFGKTKIFFRAGQVAYLEK 699


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.124    0.317 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 721,245
Number of extensions: 30649
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 32
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)