BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16005
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 73/120 (60%)
Query: 3 YSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVN 62
+S +F +LPRT RG +VLG P G Y NG SV + + ++IYTEHS
Sbjct: 4 FSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT 63
Query: 63 VAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE 122
VAK SPSG+Y ASGD+ G VRIWDT HILK GP+KDI+W +++R+ ++ E
Sbjct: 64 VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGE 123
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 26/225 (11%)
Query: 44 NIENP---AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP 100
N NP +I + H+ A+ S G + S D G + WD + N P
Sbjct: 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG---ISNRVFP 363
Query: 101 -------------IGGPIKDIAWSPDNQRMISIVENG---AKVSSLPIDYEPSSISLDHE 144
G + ++W D+ +++ +G +K + + +P +++ +
Sbjct: 364 DVHATMITGIKTTSKGDLFTVSWD-DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 422
Query: 145 HGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK 204
G +AV I+I +G K++ +PI Y S ++L ++ VAVGG DSKVH+Y+L+
Sbjct: 423 -GDIAVAACYKHIAIYSHG-KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 480
Query: 205 SLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP-DFE 248
S+S + H +T +FS + +LVA+D RKV+ Y V +FE
Sbjct: 481 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 21/113 (18%)
Query: 26 DPKGKNFLYTNGN-SVIIRNIENPAISDIYTE-------HSCAVNVAKYSPSGFYIASGD 77
+P G F T G+ ++++ N + + ++ + HS +V +SP G IAS
Sbjct: 199 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258
Query: 78 ISGKVRIWD--TVNKEHILKNEFHPIGGPIKD----IAWSPDNQRMISIVENG 124
++IW+ T+ E + P+G I+D I W+ Q ++SI NG
Sbjct: 259 ADKTIKIWNVATLKVEKTI-----PVGTRIEDQQLGIIWT--KQALVSISANG 304
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-------KEHILKNEFHPIGGPIK 106
+ EH+ V+ +Y+P G AS G + +++ V+ ++ LKN H G +
Sbjct: 186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS--GSVF 243
Query: 107 DIAWSPDNQRMIS 119
+ WSPD ++ S
Sbjct: 244 GLTWSPDGTKIAS 256
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 30 KNFLYTNG--NSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
K F+ G + V + + ++S++ T H + +S +G ++ + D S KV +
Sbjct: 460 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519
Query: 87 TVNK---EHILKNEFHPIGGPIKDIAWSPDNQRMIS-------IVENGAKVSSLPI 132
N H FH + ++WSPDN R+ + IV N K S PI
Sbjct: 520 VANNFELAHTNSWTFHT--AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 2 SYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTE 56
S S K I P TQR L DP Y G S +R +++ P +
Sbjct: 3 SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 62
Query: 57 HSCAVNVAKYSP--SGFYIASGDISGKVRIWD-TVNKEHI-----LKNEFHPIGGPIKDI 108
S V K+SP Y+ SGD SGKV +W T +KE +K+EF + GPI DI
Sbjct: 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 122
Query: 109 AWSPDNQRMISIVE 122
+W + +R+ + E
Sbjct: 123 SWDFEGRRLCVVGE 136
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
Query: 37 GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95
GN++ + + + +S D+ T + SPS YIA+GD+ GK+ ++D ++E +
Sbjct: 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-VKT 524
Query: 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS 155
+ + I I+W P E GA + E LVA G D+
Sbjct: 525 SRWAFRTSKINAISWKP--------AEKGANEEEI-------------EEDLVATGSLDT 563
Query: 156 KISI 159
I I
Sbjct: 564 NIFI 567
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 146 GLVAVGGADSKISIVEN--GAKVSSLPIDYEPSSISLDHEHGLVAVGGAD-SKVHIYELN 202
G AV D + I+++ G + S+ ++ S++SL + VAVG + + + +++L+
Sbjct: 418 GFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY--VAVGLEEGNTIQVFKLS 475
Query: 203 NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
+ +S + + S SPS Y+ A D K++LY + E
Sbjct: 476 DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 2 SYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTE 56
S S K I P TQR L DP Y G S +R +++ P +
Sbjct: 3 SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 62
Query: 57 HSCAVNVAKYSP--SGFYIASGDISGKVRIWD-TVNKEHI-----LKNEFHPIGGPIKDI 108
S V K+SP Y+ SGD SGKV +W T +KE +K+EF + GPI DI
Sbjct: 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 122
Query: 109 AWSPDNQRMISIVE 122
+W + +R+ + E
Sbjct: 123 SWDFEGRRLCVVGE 136
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
Query: 37 GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95
GN++ + + + +S D+ T + SPS YIA+GD+ GK+ ++D ++E +
Sbjct: 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYDLQSRE-VKT 524
Query: 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS 155
+ + I I+W P E GA + E LVA G D+
Sbjct: 525 SRWAFRTSKINAISWKP--------AEKGANEEEI-------------EEDLVATGSLDT 563
Query: 156 KISI 159
I I
Sbjct: 564 NIFI 567
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 146 GLVAVGGADSKISIVEN--GAKVSSLPIDYEPSSISLDHEHGLVAVGGAD-SKVHIYELN 202
G AV D + I+++ G + S+ ++ S++SL + VAVG + + + +++L+
Sbjct: 418 GFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY--VAVGLEEGNTIQVFKLS 475
Query: 203 NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
+ +S + + S SPS Y+ A D K++LY + E
Sbjct: 476 DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYDLQSRE 521
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 86
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 139
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 72
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 125
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 72
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 125
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 75
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 128
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 75
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 128
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 75
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 128
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 74
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 127
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 65
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 118
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 69
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 122
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 68
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 121
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 181
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 70
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 123
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 69
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 122
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 93
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 146
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWD 86
V+ K+SP+G YI + + +++WD
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWD 244
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 91
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 144
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWD 86
V+ K+SP+G YI + + +++WD
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWD 242
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 72
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 125
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++AS ++IW + + H +G I
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG--IS 72
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 125
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N A+ H+ AV+ K+SP+G ++A+ ++IW + + H +G I
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG--IS 72
Query: 107 DIAWSPDNQRMISI----------VENGAKVSSLP--------IDYEPSSISLDHEHGLV 148
D+AWS D+ ++S V +G + +L ++ P S L+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-------NLI 125
Query: 149 AVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKS 205
G D + I V+ G + +LP +P S++ + + L+ D I++ +
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
D PV+ FSP+ +Y++A+ + L+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 30/234 (12%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP-AISDIYTEHSC 59
++Y K A L R ++ D +GK + II + +P A+S + +
Sbjct: 61 LAYGEKNSVARLAR-------IVETDQEGKKYWKL----TIIAELRHPFALSASSGKTTN 109
Query: 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMIS 119
V +S G I +G +G++R+W NK L N + PI + W+ D +IS
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLW---NKTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 120 IVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSIS 179
+ V ++ I + S ++ L GG+ EN + SL +D E
Sbjct: 167 M-----DVENVTILWNVISGTVMQHFELKETGGSSIN---AENHSGDGSLGVDVEW---- 214
Query: 180 LDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233
+D + ++ G + +Y++ K+ + K + H GP++ F+ +N+ L+++
Sbjct: 215 VDDDKFVIP--GPKGAIFVYQITEKTPTGKL-IGHHGPISVLEFNDTNKLLLSA 265
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 66 YSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG 124
YSP G Y+ASG I G + I+D + + E H + PI+ + +SPD+Q +++ ++G
Sbjct: 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM--PIRSLTFSPDSQLLVTASDDG 228
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI---------GGPIKD 107
H+ V + +S G +A+GD +G++RIW+ + + L + PI GG + D
Sbjct: 1133 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ--LLHSCAPISVEEGTATHGGWVTD 1190
Query: 108 IAWSPDNQRMIS 119
+ +SPD++ ++S
Sbjct: 1191 VCFSPDSKTLVS 1202
Score = 34.3 bits (77), Expect = 0.061, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 148 VAVGGADSKISIVENGAKVSSLPIDYEPSSISLDH-----EHGLVAVGGADSKVHIYELN 202
+A AD K+ I ++ D ++ H H L+A G D + +++LN
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 203 NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
K H V C FSP +E L + A + L+ V
Sbjct: 739 QKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWD--------TVN-KEHILKNEFHP--IGGPI 105
H+ +VN ++SP +AS G +R+WD ++N K L +E P + +
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 808
Query: 106 KDIAWSPDNQRMISIVEN 123
K +WS D ++I +N
Sbjct: 809 KCCSWSADGDKIIVAAKN 826
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 57 HSCAVNVAKYSPSG--FYIASGDISGKVRIWDT----VNKEHILKNEFHPIGGPIKDIAW 110
H V+ +SP G F AS D + +R+W+T N +LK E + + +
Sbjct: 888 HLSWVHGVMFSPDGSSFLTASDDQT--IRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 111 SPDNQRMISIVENGAKVSSLPIDYEP----SSISLDHEHGLVAVGGADSKISIVE 161
+ DN R + ++ + IDY P S L VA G D I I+E
Sbjct: 946 AVDNIRGLQLIAG----KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 996
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI---------GGPIKD 107
H+ V + +S G +A+GD +G++RIW+ + + L + PI GG + D
Sbjct: 1126 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ--LLHSCAPISVEEGTATHGGWVTD 1183
Query: 108 IAWSPDNQRMIS 119
+ +SPD++ ++S
Sbjct: 1184 VCFSPDSKTLVS 1195
Score = 34.3 bits (77), Expect = 0.061, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 148 VAVGGADSKISIVENGAKVSSLPIDYEPSSISLDH-----EHGLVAVGGADSKVHIYELN 202
+A AD K+ I ++ D ++ H H L+A G D + +++LN
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 203 NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
K H V C FSP +E L + A + L+ V
Sbjct: 732 QKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWD--------TVN-KEHILKNEFHP--IGGPI 105
H+ +VN ++SP +AS G +R+WD ++N K L +E P + +
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 801
Query: 106 KDIAWSPDNQRMISIVEN 123
K +WS D ++I +N
Sbjct: 802 KCCSWSADGDKIIVAAKN 819
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 57 HSCAVNVAKYSPSG--FYIASGDISGKVRIWDT----VNKEHILKNEFHPIGGPIKDIAW 110
H V+ +SP G F AS D + +R+W+T N +LK E + + +
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQT--IRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 111 SPDNQRMISIVENGAKVSSLPIDYEP----SSISLDHEHGLVAVGGADSKISIVE 161
+ DN R + ++ + IDY P S L VA G D I I+E
Sbjct: 939 AVDNIRGLQLIAG----KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 989
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 40/178 (22%)
Query: 99 HPIGGPI--------KDIAWSPDNQRMISIVENGAKVSSL-PIDYEPSSISLDHEHG-LV 148
HP G I K + W +N R I + +S+ + + P HE+G L+
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP------HEYGPLL 116
Query: 149 AVGGADSKISIVENGAKVSSLPI------------DYEPSSISLDHEHG------LVAVG 190
V +D K+S+VE ++ PI + P++I D EH G
Sbjct: 117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 191 GADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPS---NEYLVASDAHRKVVLY 242
GAD+ V I++ N+ + + E H V D ++SP+ YL + R +++
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 40/178 (22%)
Query: 99 HPIGGPI--------KDIAWSPDNQRMISIVENGAKVSSL-PIDYEPSSISLDHEHG-LV 148
HP G I K + W +N R I + +S+ + + P HE+G L+
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP------HEYGPLL 118
Query: 149 AVGGADSKISIVENGAKVSSLPI------------DYEPSSISLDHEHG------LVAVG 190
V +D K+S+VE ++ PI + P++I D EH G
Sbjct: 119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178
Query: 191 GADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPS---NEYLVASDAHRKVVLY 242
GAD+ V I++ N+ + + E H V D ++SP+ YL + R +++
Sbjct: 179 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116
H+ V SP G AS D G R+WD E + + G PI I +SP+
Sbjct: 195 HTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE---MAAGAPINQICFSPNRYW 251
Query: 117 MISIVENGAKVSSL 130
M + E G ++ L
Sbjct: 252 MCAATEKGIRIFDL 265
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 35/201 (17%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116
HS V+ S +G + S +R+W+ N + K H + +A+SPDN++
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHT--KDVLSVAFSPDNRQ 123
Query: 117 MIS------------------IVENGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKI 157
++S + GA + + + P SLD ++ GG D+ +
Sbjct: 124 IVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSP---SLDAP--VIVSGGWDNLV 178
Query: 158 SI--VENGAKVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNN-KSLSPKAEL 212
+ + G V+ L +Y +S+++ + L A D +++L ++LS E+
Sbjct: 179 KVWDLATGRLVTDLKGHTNY-VTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS---EM 234
Query: 213 DHLGPVTDCSFSPSNEYLVAS 233
P+ FSP+ ++ A+
Sbjct: 235 AAGAPINQICFSPNRYWMCAA 255
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 47 NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106
N I + H VN SP+G YIA+G K+ IWD +N + + EF G I
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-QREFDA-GSTIN 259
Query: 107 DIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHE 144
IA++P Q + + G K+ +L + +++ E
Sbjct: 260 QIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAE 297
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 176 SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA 235
S ++L E+ D + +++L + + K + H V +FSP N ++++ A
Sbjct: 80 SDLALSQENCFAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
Query: 236 HRKVVLYRV 244
R++ L+ +
Sbjct: 139 EREIKLWNI 147
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 40/178 (22%)
Query: 99 HPIGGPI--------KDIAWSPDNQRMISIVENGAKVSSL-PIDYEPSSISLDHEHG-LV 148
HP G I K + W +N R I + +S+ + + P HE+G L+
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP------HEYGPLL 116
Query: 149 AVGGADSKISIVENGAKVSSLPI------------DYEPSSISLDHEHG------LVAVG 190
V +D K+S+VE ++ PI + P++I D EH G
Sbjct: 117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 191 GADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPS---NEYLVASDAHRKVVLY 242
GAD+ V I++ N+ + + E H V D ++SP+ YL + R +++
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE--HI---LKNEFHPI-GGPIKDIAW 110
H+ V + +S +A+GD +G++RIW+ N E H+ L E GG + D+ +
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCF 1191
Query: 111 SPDNQRMIS 119
SPD + +IS
Sbjct: 1192 SPDGKMLIS 1200
Score = 32.7 bits (73), Expect = 0.21, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN----KEHILKNEFHPIGGPIKDI---- 108
H+ +VN ++SP +AS G +++WD + K +K F + P +D+
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIV 807
Query: 109 ---AWSPDNQRMISIVEN 123
+WS D R++ +N
Sbjct: 808 KCCSWSADGARIMVAAKN 825
Score = 32.0 bits (71), Expect = 0.34, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 184 HGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
H L+A G +D + +++LN K H V C FSP ++ L + A + L+
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 176 SSISLDHEHGLVAVGGADSKVHIYELNN-------KSLSPKAELDHLGPVTDCSFSPSNE 228
S+ S+D L+A G + ++ I+ ++N LS + H G VTD FSP +
Sbjct: 1139 SAFSVDST--LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGK 1196
Query: 229 YLVASDAHRK 238
L+++ + K
Sbjct: 1197 MLISAGGYIK 1206
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 40/178 (22%)
Query: 99 HPIGGPI--------KDIAWSPDNQRMISIVENGAKVSSL-PIDYEPSSISLDHEHG-LV 148
HP G I K + W +N R I + +S+ + + P HE+G ++
Sbjct: 63 HPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP------HEYGPML 116
Query: 149 AVGGADSKISIVENGAKVSSLPI------------DYEPSSISLDHEHG------LVAVG 190
V +D K+S+VE ++ PI + P++I D EH G
Sbjct: 117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 191 GADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPS---NEYLVASDAHRKVVLY 242
GAD+ V I++ N+ + + E H V D ++SP+ Y+ + R +++
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 40/224 (17%)
Query: 51 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK----------EHILKNEFHP 100
SD+Y C +SP G ++A+G +RIWD N+ + I ++ P
Sbjct: 122 SDLYIRSVC------FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 175
Query: 101 IGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHG-LVAVGGADSKISI 159
G + ++ S D I + G +L I+ +++++ G +A G D + +
Sbjct: 176 SGDKL--VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 160 --VENGAKVSSLPIDYEPS--------SISLDHEHGLVAVGGADSKVHIYEL---NNKSL 206
E G V L + E S+ + V G D V ++ L NNKS
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293
Query: 207 SP-----KAELDHLGP---VTDCSFSPSNEYLVASDAHRKVVLY 242
S E+ ++G V + + ++EY+++ R V+ +
Sbjct: 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 39 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98
+V + N+ N + H+ V+ SP G ASG G V +WD + + E
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Query: 99 HPIGGPIKDIAWSPDNQRMISIVENGAKVSSL 130
+ + I + +SP+ + + E+G K+ L
Sbjct: 602 NSV---IHALCFSPNRYWLCAATEHGIKIWDL 630
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 77/222 (34%), Gaps = 34/222 (15%)
Query: 23 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKV 82
GGD + + T G+S I +++ + H V +SP G Y+AS
Sbjct: 34 CGGDRRIR-IWGTEGDSWICKSV-------LSEGHQRTVRKVAWSPCGNYLASASFDATT 85
Query: 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLD 142
IW + +K +AW+P +G +++ D +D
Sbjct: 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAP----------SGNLLATCSRDKSVWVWEVD 135
Query: 143 HEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELN 202
E V +S V++ + + PS L+A D V +Y
Sbjct: 136 EEDEYECVSVLNSHTQDVKH--------VVWHPS-------QELLASASYDDTVKLYREE 180
Query: 203 NKSLSPKAELD-HLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243
A L+ H V +F PS + L + R V ++R
Sbjct: 181 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 46 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI 105
N + T HS +V +SP G IAS V++W N+ L +
Sbjct: 455 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSV 511
Query: 106 KDIAWSPDNQRMISIVEN 123
+ +A+SPD Q + S ++
Sbjct: 512 RGVAFSPDGQTIASASDD 529
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 27 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
P G+ + + + N + T HS +V +SP G IAS V++W
Sbjct: 26 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW- 84
Query: 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123
N+ L ++ +A+SPD Q + S ++
Sbjct: 85 --NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 27 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
P G+ + + + N + T HS +VN + P G IAS V++W
Sbjct: 231 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW- 289
Query: 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123
N+ L + +A+SPD Q + S ++
Sbjct: 290 --NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 27 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
P G+ + + + N + T HS +V +SP G IAS V++W
Sbjct: 67 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW- 125
Query: 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123
N+ L + +A+SPD Q + S ++
Sbjct: 126 --NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 27 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
P G+ + + + N + T HS +V +SP G IAS V++W
Sbjct: 477 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW- 535
Query: 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMIS 119
N+ L + +A+SPD Q + S
Sbjct: 536 --NRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 566
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116
HS +V +SP G IAS V++W N+ L + +A+SPD Q
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 117 MISIVEN 123
+ S ++
Sbjct: 72 IASASDD 78
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 27 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
P G+ + + + N + T HS +V +SP IAS V++W
Sbjct: 395 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW- 453
Query: 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123
N+ L ++ +A+SPD Q + S ++
Sbjct: 454 --NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 488
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 29/192 (15%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116
HS V + G +ASG V+IWD + I K +K +AW P
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDA--RSSIPKFTKTNHNAAVKAVAWCPWQSN 273
Query: 117 MISIVENGAKVSSLPIDYEPSSISLDHE-HGLVAVGGADSKISIVENGAKVSSLPIDYEP 175
+++ ++D + H A GA +++ V+ G++V+SL + P
Sbjct: 274 LLAT----------------GGGTMDKQIHFWNAATGA--RVNTVDAGSQVTSLI--WSP 313
Query: 176 SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVASD 234
S + HG D+ + I+ ++ L+ + ++ H V + SP L +
Sbjct: 314 HSKEIMSTHGF-----PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA 368
Query: 235 AHRKVVLYRVPD 246
+ + +RV D
Sbjct: 369 SDENLKFWRVYD 380
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 25/118 (21%)
Query: 30 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG------------------- 70
K F T N + N P I D+Y E+ C + Y +G
Sbjct: 56 KVFDDTVDNFTVYENTIKPLIIDLY-ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTP 114
Query: 71 --FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAK 126
F A+GDI + I+D N + I + + G + D+ ++M++ +ENG K
Sbjct: 115 GIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQK---RKMVAALENGKK 169
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 37 GNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94
GN +++ N+ I + H+ +N SP G IAS G++ +W+ K+ +
Sbjct: 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY 134
+ +A+SP+ + + G KV SL Y
Sbjct: 233 TLSAQD---EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 37 GNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94
GN +++ N+ I + H+ +N SP G IAS G++ +W+ K+ +
Sbjct: 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY 134
+ +A+SP+ + + G KV SL Y
Sbjct: 233 TLSAQD---EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 37 GNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94
GN +++ N+ I + H+ +N SP G IAS G++ +W+ K+ +
Sbjct: 167 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 226
Query: 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY 134
+ +A+SP+ + + G KV SL Y
Sbjct: 227 TLSAQD---EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 263
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 37 GNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94
GN +++ N+ I + H+ +N SP G IAS G++ +W+ K+ +
Sbjct: 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY 134
+ +A+SP+ + + G KV SL Y
Sbjct: 233 TLSAQD---EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 37 GNSVIIR--NIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94
GN +++ N+ I + H+ +N SP G IAS G++ +W+ K+ +
Sbjct: 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY 134
+ +A+SP+ + + G KV SL Y
Sbjct: 233 TLSAQD---EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 145 HGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGG----ADSKVHIYE 200
HGL+A G AD + I N AKV + ID++ + +L+ HG + + AD+ V I
Sbjct: 18 HGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLE-AHGNIVINDWAALADADVVIST 76
Query: 201 LNNKSLS 207
L N L
Sbjct: 77 LGNIKLQ 83
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 110 WS-PDNQRMISIVENGAKVSS----LPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA 164
W P+++ + + G ++SS L +Y +S D +G +A+G D K + +
Sbjct: 38 WDVPEDKYTLVFLGYGPEMSSTVLELTYNYGVTSYKHDEAYGHIAIGVEDVKELVAD--M 95
Query: 165 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD 213
+ +PIDYE S G +A +I LN K++ KAE D
Sbjct: 96 RKHDVPIDYEDES-------GFMAFVVDPDGYYIELLNEKTMMEKAEAD 137
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 42/219 (19%)
Query: 50 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 109
I+ + T H ++ A+ G +A+ V+I+D N IL + GP+ +A
Sbjct: 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVA 64
Query: 110 W------------SPDNQRMISIVENGAKVSSLPIDYEPSSIS----LDHEHGLV-AVGG 152
W S D + +I ENG S SS++ H++GL+ A G
Sbjct: 65 WAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGS 124
Query: 153 ADSKISI-------------VENGAKVSSLPIDYEPSSIS---LDHEHG-------LVAV 189
+D IS+ + N + + + P+ + +DH G A
Sbjct: 125 SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184
Query: 190 GGADSKVHIY-ELNNKSLSPKAELD-HLGPVTDCSFSPS 226
GG D+ + ++ E + + +L+ H V D +++PS
Sbjct: 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS 223
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 13/149 (8%)
Query: 68 PSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI-VENGAK 126
P F IA G + VR W+ + + GP+ D+ WS D ++ + + AK
Sbjct: 53 PGNFLIA-GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111
Query: 127 V------SSLPIDYEPSSISLDH-----EHGLVAVGGADSKISIVENGAKVSSLPIDYEP 175
+ ++ I + + H + V G D + + + + +
Sbjct: 112 MWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 171
Query: 176 SSISLDHEHGLVAVGGADSKVHIYELNNK 204
D + + V A+ + +Y+L N+
Sbjct: 172 RCYCADVIYPMAVVATAERGLIVYQLENQ 200
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 57/152 (37%), Gaps = 29/152 (19%)
Query: 42 IRNIENPAISDIYTEHSCAV--NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 99
R IE+P + +H C + P+GF A G I G+V I H
Sbjct: 204 FRRIESP----LKHQHRCVAIFKDKQNKPTGF--ALGSIEGRVAI--------------H 243
Query: 100 PIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISI 159
I P + DN NG S+ Y + I+ HG +A G+D + S
Sbjct: 244 YINPPNP----AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 299
Query: 160 VENGAKV---SSLPIDYEPSSISLDHEHGLVA 188
+ A+ +S +D S+ +H + A
Sbjct: 300 WDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 40 VIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93
V + N+ N + + H+ +N SP G ASG G+ +WD +H+
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 36 NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95
N V N+ I + H+ +N SP G IAS G++ +W+ K+
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYT 233
Query: 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY 134
+ +A+SP+ + + G KV SL Y
Sbjct: 234 LSAQD---EVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 40 VIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93
V + N+ N + + H+ +N SP G ASG G+ +WD +H+
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 99
HS V ++ SG + S GK+R WD KE I H
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 99
HS V ++ SG + S GK+R WD KE I H
Sbjct: 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 29 GKNFLYTNG-NSVIIRNIENPAISDIYTEHSC-AVNVAKYSPS---GFYIASGDISGKVR 83
G+ +L+ + N++++ NIE I + + +VN + Y S F D S R
Sbjct: 26 GQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR 85
Query: 84 --------IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID 133
I+D N E + NE + PI+ + WSP ++ + +N + P D
Sbjct: 86 YSYTATYYIYDLSNGEFVRGNE---LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGD 140
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSP 112
HS V +++P G ++ASG V +W + E + F G +K +AW P
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSP 112
HS V +++P G ++ASG V +W + E + F G +K +AW P
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNK-EHILKNEFHPIGGPIKDIAWSPDNQRMI 118
A VA +S G YI +G GK+ +D N E++ + H I D+ +SPD I
Sbjct: 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE--KSISDMQFSPDLTYFI 234
Query: 119 S 119
+
Sbjct: 235 T 235
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 13/162 (8%)
Query: 72 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLP 131
Y +G +++WD N + + + P+ P+K + +SP ++I++N K
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWK-SPV--PVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 132 IDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGG 191
YE S HE L V I G +++ + + G
Sbjct: 145 NIYEIERDSATHE--LTKVSEEPIHKIITHEGLDAATVA--------GWSTKGKYIIAGH 194
Query: 192 ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233
D K+ Y+++N + H ++D FSP Y + S
Sbjct: 195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS 236
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98
+VA S G +AS SG V +W+ + KE +L N+F
Sbjct: 98 TDVAWVSEKGILVASD--SGAVELWEILEKESLLVNKF 133
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPDN 114
HS V +++P G ++ASG V +W + E + F G +K +AW P
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 115 QRMIS 119
+++
Sbjct: 209 SNVLA 213
>pdb|1GQZ|A Chain A, Refinement Of Haemophilus Influenzae Diaminopimelate
Epimerase At 1.7a
pdb|2GKE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
With An Irreversible Inhibitor Ll-Azidap
pdb|2GKJ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
With An Irreversible Inhibitor Dl-Azidap
Length = 274
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVA 149
K H L N+F + G +++ ++P+ R ++ G L I P LD + +
Sbjct: 5 KMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFN 64
Query: 150 VGGADSKISIVENGAKV 166
G S++S NGA+
Sbjct: 65 ADG--SEVSQCGNGARC 79
>pdb|1PK0|A Chain A, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|B Chain B, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|C Chain C, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
Length = 507
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 108 IAWSPDNQRMISIVENGAKVSSLPI-----------DYEPSSISLDHEHG---LVAVGGA 153
I + P N+ +++++G L + Y P L +HG V G
Sbjct: 35 ILFRPVNKLATNLIKSGVATKGLNVHGKSSDWGPVAGYIPFDQDLSKKHGQQLAVEKGNL 94
Query: 154 DSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD----SKVHIYELNNK 204
++K SI E+ ++ +P+ + I E+G++ G + K ++ E NN+
Sbjct: 95 ENKKSITEHEGEIGKIPLKLDHLRIEELKENGIILKGKKEIDNGKKYYLLESNNQ 149
>pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophilus Influenzae
Length = 274
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVA 149
K H L N+F + G +++ ++P+ R ++ G L I P LD + +
Sbjct: 5 KMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFN 64
Query: 150 VGGADSKISIVENGAKV 166
G S++S NGA+
Sbjct: 65 ADG--SEVSQCGNGARC 79
>pdb|1K8T|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef)
pdb|1K90|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K93|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1LVC|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1S26|A Chain A, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|B Chain B, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|C Chain C, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
Length = 510
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 108 IAWSPDNQRMISIVENGAKVSSLPI-----------DYEPSSISLDHEHG---LVAVGGA 153
I + P N+ +++++G L + Y P L +HG V G
Sbjct: 36 ILFRPVNKLATNLIKSGVATKGLNVHGKSSDWGPVAGYIPFDQDLSKKHGQQLAVEKGNL 95
Query: 154 DSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD----SKVHIYELNNK 204
++K SI E+ ++ +P+ + I E+G++ G + K ++ E NN+
Sbjct: 96 ENKKSITEHEGEIGKIPLKLDHLRIEELKENGIILKGKKEIDNGKKYYLLESNNQ 150
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 46 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 96
++ A+ T H+ VN ++ G ++ + ++R+W++ N E+ L N
Sbjct: 233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN 283
>pdb|1XFU|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
Length = 747
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 108 IAWSPDNQRMISIVENGAKVSSLPID-----------YEPSSISLDHEHG---LVAVGGA 153
I + P N+ +++++G L + Y P L +HG V G
Sbjct: 273 ILFRPVNKLATNLIKSGVATKGLNVHGKSSDWGPVAGYIPFDQDLSKKHGQQLAVEKGNL 332
Query: 154 DSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD----SKVHIYELNNK 204
++K SI E+ ++ +P+ + I E+G++ G + K ++ E NN+
Sbjct: 333 ENKKSITEHEGEIGKIPLKLDHLRIEELKENGIILKGKKEIDNGKKYYLLESNNQ 387
>pdb|1XFV|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFX|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFY|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1Y0V|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 777
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 108 IAWSPDNQRMISIVENGAKVSSLPID-----------YEPSSISLDHEHG---LVAVGGA 153
I + P N+ +++++G L + Y P L +HG V G
Sbjct: 303 ILFRPVNKLATNLIKSGVATKGLNVHGKSSDWGPVAGYIPFDQDLSKKHGQQLAVEKGNL 362
Query: 154 DSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD----SKVHIYELNNK 204
++K SI E+ ++ +P+ + I E+G++ G + K ++ E NN+
Sbjct: 363 ENKKSITEHEGEIGKIPLKLDHLRIEELKENGIILKGKKEIDNGKKYYLLESNNQ 417
>pdb|2Q9J|A Chain A, Crystal Structure Of The C217s Mutant Of Diaminopimelate
Epimerase
Length = 274
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVA 149
K H L N+F + G +++ ++P+ R ++ G L I P LD + +
Sbjct: 5 KMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFN 64
Query: 150 VGGADSKISIVENGAKV 166
G S++S NGA+
Sbjct: 65 ADG--SEVSQXGNGARC 79
>pdb|1OY5|A Chain A, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
pdb|1OY5|B Chain B, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
pdb|1OY5|C Chain C, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
Length = 257
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 175 PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD 213
P IS E+G+V KV +Y ++ + +PK ++D
Sbjct: 15 PHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAPKGQVD 53
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 28 KGKNFLYTNGNSVIIRNIENPAISDIYTE 56
KG FL N ++VIIRNIE A D + E
Sbjct: 146 KGGGFLIKNVDNVIIRNIEFEAPLDYFPE 174
>pdb|2Q9H|A Chain A, Crystal Structure Of The C73s Mutant Of Diaminopimelate
Epimerase
Length = 274
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVA 149
K H L N+F + G +++ ++P+ R ++ G L I P LD + +
Sbjct: 5 KMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFN 64
Query: 150 VGGADSKISIVENGAKV 166
G S++S NGA+
Sbjct: 65 ADG--SEVSQSGNGARC 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,254,933
Number of Sequences: 62578
Number of extensions: 363145
Number of successful extensions: 1030
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 183
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)