Query psy16005
Match_columns 248
No_of_seqs 580 out of 1413
Neff 11.8
Searched_HMMs 29240
Date Fri Aug 16 18:32:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 2.5E-45 8.6E-50 277.0 32.2 231 15-248 11-261 (304)
2 1nr0_A Actin interacting prote 100.0 4.3E-45 1.5E-49 299.7 30.0 247 1-247 1-271 (611)
3 1vyh_C Platelet-activating fac 100.0 5.7E-44 1.9E-48 280.1 30.6 231 15-248 106-371 (410)
4 3ow8_A WD repeat-containing pr 100.0 3.5E-43 1.2E-47 267.1 31.7 229 14-245 77-320 (321)
5 3ow8_A WD repeat-containing pr 100.0 3.9E-43 1.3E-47 266.8 31.5 231 14-247 29-280 (321)
6 4gqb_B Methylosome protein 50; 100.0 1.8E-43 6E-48 270.8 29.4 228 16-247 81-332 (344)
7 1vyh_C Platelet-activating fac 100.0 6.5E-43 2.2E-47 274.1 29.6 228 15-245 148-410 (410)
8 1got_B GT-beta; complex (GTP-b 100.0 1.2E-41 4.1E-46 260.7 33.4 234 14-248 52-303 (340)
9 2pm7_B Protein transport prote 100.0 1.3E-41 4.6E-46 255.8 31.6 232 14-245 6-284 (297)
10 3iz6_a 40S ribosomal protein R 100.0 1E-41 3.5E-46 264.8 31.3 234 14-247 63-376 (380)
11 4g56_B MGC81050 protein; prote 100.0 1.4E-42 4.6E-47 267.5 25.9 228 15-246 92-343 (357)
12 1nr0_A Actin interacting prote 100.0 1.1E-41 3.7E-46 279.6 32.9 234 14-247 187-568 (611)
13 1got_B GT-beta; complex (GTP-b 100.0 1.3E-41 4.5E-46 260.5 30.7 225 15-243 95-340 (340)
14 3bg1_A Protein SEC13 homolog; 100.0 2.7E-42 9.2E-47 261.8 25.7 238 8-245 4-292 (316)
15 2xzm_R RACK1; ribosome, transl 100.0 2.8E-41 9.7E-46 259.0 31.6 233 14-247 73-341 (343)
16 2pbi_B Guanine nucleotide-bind 100.0 3.2E-41 1.1E-45 259.6 32.0 227 14-243 61-354 (354)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.9E-41 9.9E-46 259.1 31.4 240 7-246 6-283 (345)
18 1erj_A Transcriptional repress 100.0 2.6E-41 8.8E-46 263.7 31.2 232 15-248 62-343 (393)
19 3frx_A Guanine nucleotide-bind 100.0 2.9E-41 9.9E-46 256.4 30.3 231 14-248 62-319 (319)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.6E-41 1.2E-45 258.5 30.6 237 12-248 56-337 (345)
21 4gqb_B Methylosome protein 50; 100.0 1.3E-41 4.3E-46 260.5 26.2 234 13-248 26-291 (344)
22 2xzm_R RACK1; ribosome, transl 100.0 2.3E-40 8E-45 253.9 33.0 230 14-247 18-286 (343)
23 4ery_A WD repeat-containing pr 100.0 6E-40 2.1E-44 248.4 32.2 232 14-248 20-270 (312)
24 2hes_X YDR267CP; beta-propelle 100.0 3.5E-40 1.2E-44 251.6 30.0 232 15-247 56-329 (330)
25 4aow_A Guanine nucleotide-bind 100.0 9.5E-40 3.2E-44 249.7 30.8 237 10-248 32-339 (340)
26 4g56_B MGC81050 protein; prote 100.0 7.7E-41 2.6E-45 257.8 24.7 235 12-248 37-303 (357)
27 1erj_A Transcriptional repress 100.0 9.5E-40 3.3E-44 254.8 30.8 225 19-247 125-390 (393)
28 3frx_A Guanine nucleotide-bind 100.0 8.9E-40 3E-44 248.3 29.5 231 10-246 11-267 (319)
29 2ynn_A Coatomer subunit beta'; 100.0 1.6E-39 5.5E-44 245.3 29.7 230 15-247 53-303 (304)
30 1gxr_A ESG1, transducin-like e 100.0 4.6E-39 1.6E-43 245.5 32.6 232 15-248 49-298 (337)
31 4ery_A WD repeat-containing pr 100.0 8.4E-39 2.9E-43 242.1 33.2 229 14-245 62-311 (312)
32 3f3f_A Nucleoporin SEH1; struc 100.0 2.2E-39 7.5E-44 247.9 30.2 238 11-248 5-339 (351)
33 4h5i_A Guanine nucleotide-exch 100.0 5.9E-40 2E-44 253.5 26.3 184 60-246 135-343 (365)
34 2ymu_A WD-40 repeat protein; u 100.0 1.6E-39 5.5E-44 265.0 29.9 223 15-243 342-577 (577)
35 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-39 5.6E-44 251.3 28.2 230 15-246 6-274 (372)
36 2hes_X YDR267CP; beta-propelle 100.0 2.1E-39 7.3E-44 247.3 27.8 236 8-247 6-281 (330)
37 3jrp_A Fusion protein of prote 100.0 2.5E-39 8.4E-44 250.7 27.5 233 14-246 8-287 (379)
38 3dwl_C Actin-related protein 2 100.0 1.3E-40 4.5E-45 258.2 19.2 228 16-245 10-280 (377)
39 3k26_A Polycomb protein EED; W 100.0 1.4E-38 4.9E-43 245.4 30.0 229 16-246 68-366 (366)
40 1gxr_A ESG1, transducin-like e 100.0 4.9E-38 1.7E-42 239.8 32.4 227 15-245 95-336 (337)
41 1sq9_A Antiviral protein SKI8; 100.0 8.1E-39 2.8E-43 249.6 28.5 243 1-248 1-324 (397)
42 2ymu_A WD-40 repeat protein; u 100.0 1.7E-38 5.7E-43 259.0 30.3 226 14-245 13-292 (577)
43 3zwl_B Eukaryotic translation 100.0 8.5E-38 2.9E-42 241.2 32.1 230 14-248 29-306 (369)
44 3dw8_B Serine/threonine-protei 100.0 1.3E-38 4.6E-43 252.0 28.0 232 15-248 26-375 (447)
45 1pgu_A Actin interacting prote 100.0 9.5E-39 3.2E-43 262.0 27.9 244 3-247 4-284 (615)
46 4ggc_A P55CDC, cell division c 100.0 1.1E-37 3.9E-42 236.1 31.6 227 20-248 28-317 (318)
47 4e54_B DNA damage-binding prot 100.0 3.4E-39 1.2E-43 254.9 24.0 233 15-248 117-432 (435)
48 3i2n_A WD repeat-containing pr 100.0 1.6E-38 5.3E-43 244.4 26.5 241 5-247 6-292 (357)
49 4aez_A CDC20, WD repeat-contai 100.0 1.1E-37 3.7E-42 243.9 31.4 235 11-248 128-382 (401)
50 3mkq_A Coatomer beta'-subunit; 100.0 3.7E-38 1.3E-42 266.3 30.7 232 14-248 10-261 (814)
51 3dm0_A Maltose-binding peripla 100.0 5.3E-38 1.8E-42 261.3 29.9 232 14-246 427-693 (694)
52 3ei3_B DNA damage-binding prot 100.0 1.1E-37 3.8E-42 242.3 29.7 233 14-248 70-341 (383)
53 3dm0_A Maltose-binding peripla 100.0 1.7E-37 5.7E-42 258.3 30.5 229 14-247 379-633 (694)
54 3vl1_A 26S proteasome regulato 100.0 2.6E-37 8.9E-42 242.9 29.4 227 18-247 98-366 (420)
55 4gga_A P55CDC, cell division c 100.0 4.4E-37 1.5E-41 241.8 30.2 229 15-247 145-396 (420)
56 2pm9_A Protein WEB1, protein t 100.0 3.8E-38 1.3E-42 247.2 23.8 232 15-247 65-338 (416)
57 3vl1_A 26S proteasome regulato 100.0 2.9E-38 9.9E-43 248.3 22.9 226 20-248 59-324 (420)
58 1yfq_A Cell cycle arrest prote 100.0 3.8E-37 1.3E-41 235.6 28.4 230 12-248 6-284 (342)
59 3i2n_A WD repeat-containing pr 100.0 1.6E-37 5.3E-42 238.9 25.5 233 15-248 63-355 (357)
60 1sq9_A Antiviral protein SKI8; 100.0 1.1E-37 3.8E-42 243.2 24.2 233 15-248 60-397 (397)
61 3jro_A Fusion protein of prote 100.0 1.5E-37 5E-42 260.4 26.4 234 13-246 5-285 (753)
62 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-36 4.2E-41 229.8 29.1 235 7-248 9-257 (313)
63 1k8k_C P40, ARP2/3 complex 41 100.0 4.7E-37 1.6E-41 237.5 26.6 232 15-247 50-362 (372)
64 3zwl_B Eukaryotic translation 100.0 4.2E-36 1.4E-40 231.7 31.1 230 15-246 72-346 (369)
65 2pm9_A Protein WEB1, protein t 100.0 5.3E-37 1.8E-41 240.6 24.3 232 16-248 11-296 (416)
66 4a11_B DNA excision repair pro 100.0 1.2E-35 4E-40 232.2 31.8 232 14-248 40-367 (408)
67 2j04_B YDR362CP, TAU91; beta p 100.0 2.9E-37 9.8E-42 247.6 22.0 229 16-246 132-428 (524)
68 3k26_A Polycomb protein EED; W 100.0 1.1E-36 3.7E-41 234.8 24.0 233 11-247 12-319 (366)
69 3mmy_A MRNA export factor; mRN 100.0 1.6E-36 5.6E-41 233.9 24.6 226 14-243 36-343 (368)
70 3gre_A Serine/threonine-protei 100.0 5.9E-37 2E-41 242.1 22.5 239 8-248 54-361 (437)
71 2aq5_A Coronin-1A; WD40 repeat 100.0 5.4E-36 1.9E-40 234.3 27.2 230 14-247 78-343 (402)
72 1r5m_A SIR4-interacting protei 100.0 1.6E-36 5.5E-41 238.1 24.2 226 16-246 107-361 (425)
73 1r5m_A SIR4-interacting protei 100.0 5.4E-36 1.9E-40 235.1 27.0 227 15-247 43-320 (425)
74 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-35 6.3E-40 259.8 32.2 229 14-245 612-912 (1249)
75 3dwl_C Actin-related protein 2 100.0 8.6E-37 2.9E-41 236.8 21.0 234 9-244 48-377 (377)
76 2j04_B YDR362CP, TAU91; beta p 100.0 6.5E-36 2.2E-40 239.8 26.2 229 15-245 205-516 (524)
77 3ei3_B DNA damage-binding prot 100.0 7.4E-36 2.5E-40 232.1 25.8 225 15-246 116-382 (383)
78 3v7d_B Cell division control p 100.0 1.2E-34 4.2E-39 230.6 30.9 226 15-248 119-383 (464)
79 2xyi_A Probable histone-bindin 100.0 2.9E-35 9.8E-40 232.1 26.9 233 14-246 125-410 (430)
80 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.5E-34 8.7E-39 228.0 29.9 227 17-244 4-337 (450)
81 3iz6_a 40S ribosomal protein R 100.0 2.6E-35 8.8E-40 228.9 23.3 208 38-247 46-281 (380)
82 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-34 6.5E-39 217.8 27.0 223 15-247 57-297 (313)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 2.6E-34 8.8E-39 224.8 28.3 230 19-248 36-301 (402)
84 2pbi_B Guanine nucleotide-bind 100.0 2.4E-34 8.1E-39 221.4 27.3 196 49-247 55-272 (354)
85 4aez_A CDC20, WD repeat-contai 100.0 1.4E-33 5E-38 220.5 32.2 222 19-247 95-337 (401)
86 3vu4_A KMHSV2; beta-propeller 100.0 6.1E-34 2.1E-38 219.2 29.5 225 14-247 16-272 (355)
87 4e54_B DNA damage-binding prot 100.0 6.3E-35 2.2E-39 230.5 24.0 199 50-248 111-329 (435)
88 3gre_A Serine/threonine-protei 100.0 1.2E-34 4.1E-39 228.9 24.8 228 15-243 109-437 (437)
89 2pm7_B Protein transport prote 100.0 4.3E-34 1.5E-38 214.9 26.5 195 52-246 3-238 (297)
90 3sfz_A APAF-1, apoptotic pepti 100.0 7.7E-34 2.6E-38 249.5 31.9 235 9-247 650-1035(1249)
91 3dw8_B Serine/threonine-protei 100.0 3.7E-34 1.3E-38 226.6 26.8 225 18-245 94-445 (447)
92 3mkq_A Coatomer beta'-subunit; 100.0 8.7E-34 3E-38 239.7 29.5 231 15-247 53-303 (814)
93 3v7d_B Cell division control p 100.0 2.5E-33 8.7E-38 223.0 29.6 231 9-248 155-423 (464)
94 1pgu_A Actin interacting prote 100.0 5E-33 1.7E-37 228.1 30.8 229 15-246 201-614 (615)
95 4h5i_A Guanine nucleotide-exch 100.0 2.5E-33 8.5E-38 216.5 25.6 186 17-204 133-344 (365)
96 2oaj_A Protein SNI1; WD40 repe 100.0 3.8E-33 1.3E-37 237.1 28.6 226 13-244 13-310 (902)
97 4gga_A P55CDC, cell division c 100.0 2.3E-32 7.7E-37 215.0 30.9 223 19-248 107-355 (420)
98 2oaj_A Protein SNI1; WD40 repe 100.0 7.1E-34 2.4E-38 241.5 23.9 232 14-247 148-606 (902)
99 4gq1_A NUP37; propeller, trans 100.0 7.3E-34 2.5E-38 221.6 21.5 223 18-244 90-387 (393)
100 2j04_A TAU60, YPL007P, hypothe 100.0 3.6E-33 1.2E-37 220.6 24.2 219 15-245 13-296 (588)
101 1p22_A F-BOX/WD-repeat protein 100.0 2E-32 6.7E-37 216.3 27.1 217 15-246 131-365 (435)
102 1yfq_A Cell cycle arrest prote 100.0 5.2E-33 1.8E-37 212.6 23.1 214 15-238 54-315 (342)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5E-32 1.7E-36 214.8 29.4 228 15-245 100-390 (450)
104 3bg1_A Protein SEC13 homolog; 100.0 1.7E-33 5.7E-38 213.5 19.4 194 53-246 8-247 (316)
105 4aow_A Guanine nucleotide-bind 100.0 1.6E-32 5.5E-37 209.6 24.3 199 48-247 28-247 (340)
106 3lrv_A PRE-mRNA-splicing facto 100.0 1.8E-32 6E-37 210.1 24.5 217 24-247 43-293 (343)
107 2w18_A PALB2, fancn, partner a 100.0 1.6E-32 5.4E-37 204.7 22.4 208 16-245 110-356 (356)
108 1p22_A F-BOX/WD-repeat protein 100.0 3.4E-32 1.2E-36 214.9 25.5 221 15-247 171-415 (435)
109 3jrp_A Fusion protein of prote 100.0 6.3E-32 2.2E-36 209.1 25.3 200 48-247 1-241 (379)
110 1l0q_A Surface layer protein; 100.0 1.3E-30 4.4E-35 203.0 31.4 225 18-248 32-277 (391)
111 3bws_A Protein LP49; two-domai 100.0 4.6E-31 1.6E-35 208.1 29.0 227 15-246 167-432 (433)
112 4a11_B DNA excision repair pro 100.0 6.8E-32 2.3E-36 210.9 22.8 212 37-248 22-278 (408)
113 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-30 5.3E-35 205.9 30.3 225 9-248 152-393 (445)
114 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.4E-31 2.9E-35 207.5 28.6 222 15-246 197-442 (445)
115 3bws_A Protein LP49; two-domai 100.0 6.6E-31 2.3E-35 207.2 26.6 227 18-248 123-392 (433)
116 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-30 4.9E-35 205.9 26.7 211 15-235 83-350 (588)
117 3mmy_A MRNA export factor; mRN 100.0 1.2E-30 4.1E-35 201.1 22.7 205 43-248 24-306 (368)
118 2xyi_A Probable histone-bindin 100.0 5.6E-30 1.9E-34 201.9 25.3 229 18-246 46-353 (430)
119 1l0q_A Surface layer protein; 100.0 3.9E-29 1.3E-33 194.6 29.6 211 31-247 4-234 (391)
120 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-29 5E-34 193.3 23.9 196 52-247 5-250 (351)
121 3jro_A Fusion protein of prote 100.0 4.8E-30 1.6E-34 215.1 22.9 196 52-247 3-239 (753)
122 3lrv_A PRE-mRNA-splicing facto 100.0 2.6E-29 8.8E-34 192.5 23.8 216 18-243 77-330 (343)
123 3vu4_A KMHSV2; beta-propeller 100.0 5.2E-28 1.8E-32 186.1 29.4 217 19-246 60-336 (355)
124 2hqs_A Protein TOLB; TOLB, PAL 100.0 8.4E-27 2.9E-31 182.9 28.6 212 29-247 143-388 (415)
125 4ggc_A P55CDC, cell division c 100.0 1.4E-26 4.7E-31 175.2 26.2 191 15-205 65-317 (318)
126 3u4y_A Uncharacterized protein 100.0 2.3E-26 8E-31 175.1 26.9 227 17-247 40-305 (331)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.3E-26 1.1E-30 179.5 27.6 208 15-228 176-410 (415)
128 4gq1_A NUP37; propeller, trans 100.0 6.2E-27 2.1E-31 182.5 22.4 188 14-202 133-388 (393)
129 2ecf_A Dipeptidyl peptidase IV 100.0 5.1E-27 1.8E-31 196.7 21.9 224 17-245 36-366 (741)
130 1nir_A Nitrite reductase; hemo 100.0 9.2E-26 3.1E-30 182.2 27.9 237 8-248 171-460 (543)
131 1xfd_A DIP, dipeptidyl aminope 100.0 1.3E-27 4.4E-32 199.7 17.4 226 18-243 17-341 (723)
132 1ri6_A Putative isomerase YBHE 100.0 1E-25 3.6E-30 172.0 25.3 228 16-245 36-307 (343)
133 2ojh_A Uncharacterized protein 100.0 1.5E-26 5.1E-31 172.9 20.0 218 16-237 40-293 (297)
134 3vgz_A Uncharacterized protein 100.0 5.8E-25 2E-29 168.6 28.1 228 17-248 40-305 (353)
135 2w18_A PALB2, fancn, partner a 99.9 2.7E-25 9.4E-30 165.9 24.9 215 20-248 42-316 (356)
136 2ojh_A Uncharacterized protein 99.9 2.2E-25 7.5E-30 166.6 24.6 207 37-248 21-260 (297)
137 3hfq_A Uncharacterized protein 99.9 4.2E-25 1.4E-29 169.3 25.7 230 16-247 38-320 (347)
138 3u4y_A Uncharacterized protein 99.9 9.5E-25 3.3E-29 166.2 26.8 222 23-248 3-254 (331)
139 2z3z_A Dipeptidyl aminopeptida 99.9 4.1E-25 1.4E-29 184.2 26.2 229 16-247 119-436 (706)
140 3o4h_A Acylamino-acid-releasin 99.9 1.2E-26 3.9E-31 189.6 15.6 236 2-244 6-274 (582)
141 1jmx_B Amine dehydrogenase; ox 99.9 8.2E-25 2.8E-29 167.5 24.9 220 22-248 4-327 (349)
142 1nir_A Nitrite reductase; hemo 99.9 3.4E-24 1.2E-28 173.1 28.1 238 8-248 214-516 (543)
143 1pby_B Quinohemoprotein amine 99.9 3.4E-24 1.2E-28 163.2 24.9 213 30-248 2-312 (337)
144 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-24 3.6E-29 182.7 22.3 220 20-245 111-412 (741)
145 3scy_A Hypothetical bacterial 99.9 4.7E-23 1.6E-27 158.8 29.6 228 16-245 48-336 (361)
146 1z68_A Fibroblast activation p 99.9 2.1E-25 7.2E-30 186.4 15.4 223 22-247 20-347 (719)
147 2z3z_A Dipeptidyl aminopeptida 99.9 9.1E-24 3.1E-28 176.2 25.1 224 18-247 82-392 (706)
148 1ri6_A Putative isomerase YBHE 99.9 8.6E-23 2.9E-27 155.8 27.5 214 30-245 5-261 (343)
149 1xfd_A DIP, dipeptidyl aminope 99.9 8.6E-24 2.9E-28 176.7 21.9 223 19-246 62-393 (723)
150 4a5s_A Dipeptidyl peptidase 4 99.9 1.2E-23 4E-28 176.3 22.4 228 16-247 15-354 (740)
151 3vgz_A Uncharacterized protein 99.9 1.3E-22 4.4E-27 155.6 25.5 214 18-236 89-334 (353)
152 1k32_A Tricorn protease; prote 99.9 7.5E-24 2.6E-28 183.4 19.8 226 14-247 200-462 (1045)
153 2oit_A Nucleoporin 214KDA; NH2 99.9 5.5E-24 1.9E-28 167.6 16.8 199 17-247 36-279 (434)
154 1k32_A Tricorn protease; prote 99.9 3.8E-23 1.3E-27 179.1 22.8 219 19-245 246-501 (1045)
155 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.6E-23 2.6E-27 157.9 21.4 229 18-246 40-341 (365)
156 3scy_A Hypothetical bacterial 99.9 1.6E-20 5.4E-25 144.7 25.5 217 27-245 11-290 (361)
157 2oit_A Nucleoporin 214KDA; NH2 99.9 1.7E-21 5.7E-26 153.5 19.8 157 16-205 91-280 (434)
158 1q7f_A NHL, brain tumor CG1071 99.9 2E-19 6.9E-24 134.1 29.3 226 16-246 28-280 (286)
159 1jmx_B Amine dehydrogenase; ox 99.9 2.6E-21 9E-26 148.0 18.9 188 19-210 44-332 (349)
160 3hfq_A Uncharacterized protein 99.9 1.9E-20 6.5E-25 143.4 23.3 208 37-245 15-270 (347)
161 3fvz_A Peptidyl-glycine alpha- 99.9 1.5E-19 5E-24 137.6 26.5 230 16-245 22-321 (329)
162 3pe7_A Oligogalacturonate lyas 99.9 3E-21 1E-25 150.0 15.9 223 23-247 41-330 (388)
163 3o4h_A Acylamino-acid-releasin 99.9 1.4E-20 4.9E-25 153.7 20.5 183 58-248 21-229 (582)
164 1pby_B Quinohemoprotein amine 99.9 1.4E-20 4.8E-25 143.2 18.8 185 19-211 83-318 (337)
165 1z68_A Fibroblast activation p 99.9 2.2E-20 7.5E-25 156.2 20.5 219 19-245 61-390 (719)
166 2oiz_A Aromatic amine dehydrog 99.9 9.5E-20 3.2E-24 140.3 22.5 219 22-247 54-335 (361)
167 3pe7_A Oligogalacturonate lyas 99.9 4.2E-20 1.4E-24 143.5 18.3 224 16-244 79-380 (388)
168 2xdw_A Prolyl endopeptidase; a 99.8 2.1E-18 7.1E-23 144.0 27.0 229 18-248 125-416 (710)
169 2dg1_A DRP35, lactonase; beta 99.8 3.2E-17 1.1E-21 124.8 29.8 220 16-236 43-300 (333)
170 3no2_A Uncharacterized protein 99.8 1.8E-17 6E-22 122.8 27.4 202 28-233 4-230 (276)
171 2gop_A Trilobed protease; beta 99.8 2E-18 6.9E-23 132.1 22.9 212 18-245 59-330 (347)
172 3c5m_A Oligogalacturonate lyas 99.8 2.9E-20 9.9E-25 144.6 11.6 213 20-248 38-275 (396)
173 3azo_A Aminopeptidase; POP fam 99.8 2E-18 6.8E-23 143.1 23.2 227 15-246 21-325 (662)
174 3e5z_A Putative gluconolactona 99.8 1.1E-17 3.6E-22 125.4 24.7 224 16-247 26-287 (296)
175 1rwi_B Serine/threonine-protei 99.8 4.7E-17 1.6E-21 120.2 26.4 225 19-247 25-265 (270)
176 2gop_A Trilobed protease; beta 99.8 6.6E-18 2.2E-22 129.2 22.5 209 18-247 15-292 (347)
177 1jof_A Carboxy-CIS,CIS-muconat 99.8 6E-18 2E-22 130.5 21.7 186 19-204 84-342 (365)
178 3azo_A Aminopeptidase; POP fam 99.8 3.9E-18 1.3E-22 141.3 21.9 220 22-248 81-371 (662)
179 3c5m_A Oligogalacturonate lyas 99.8 1.5E-18 5.1E-23 135.0 17.6 219 22-247 85-385 (396)
180 3dsm_A Uncharacterized protein 99.8 2.6E-16 8.8E-21 119.6 29.3 223 19-248 45-303 (328)
181 2bkl_A Prolyl endopeptidase; m 99.8 3.4E-18 1.2E-22 142.4 20.5 230 16-248 119-399 (695)
182 4a5s_A Dipeptidyl peptidase 4 99.8 8.4E-17 2.9E-21 135.0 26.1 231 16-247 110-450 (740)
183 2dg1_A DRP35, lactonase; beta 99.8 3.5E-17 1.2E-21 124.6 21.4 223 18-245 6-262 (333)
184 1pjx_A Dfpase, DIISOPROPYLFLUO 99.8 1.8E-15 6.3E-20 114.0 29.8 227 17-246 17-299 (314)
185 2oiz_A Aromatic amine dehydrog 99.8 1.5E-16 5.3E-21 122.4 20.9 220 27-248 13-297 (361)
186 2mad_H Methylamine dehydrogena 99.8 3.1E-15 1.1E-19 115.4 27.9 217 22-248 70-352 (373)
187 2z2n_A Virginiamycin B lyase; 99.8 1.5E-14 5.1E-19 108.1 30.7 225 16-244 13-253 (299)
188 3dsm_A Uncharacterized protein 99.8 2.2E-15 7.4E-20 114.5 25.7 204 37-248 16-255 (328)
189 3c75_H MADH, methylamine dehyd 99.8 4.8E-16 1.6E-20 120.8 22.0 237 7-248 110-404 (426)
190 1yr2_A Prolyl oligopeptidase; 99.7 3.4E-16 1.1E-20 131.3 22.1 227 19-248 164-443 (741)
191 3sjl_D Methylamine dehydrogena 99.7 6.6E-16 2.3E-20 118.1 21.3 236 7-248 70-365 (386)
192 1q7f_A NHL, brain tumor CG1071 99.7 4.6E-15 1.6E-19 110.5 25.2 187 16-205 75-282 (286)
193 3fvz_A Peptidyl-glycine alpha- 99.7 1.4E-15 4.6E-20 115.7 21.5 189 58-248 23-279 (329)
194 3e5z_A Putative gluconolactona 99.7 3.7E-15 1.3E-19 111.6 23.3 189 50-245 19-245 (296)
195 2z2n_A Virginiamycin B lyase; 99.7 7.3E-14 2.5E-18 104.3 30.2 225 17-247 56-296 (299)
196 2xdw_A Prolyl endopeptidase; a 99.7 4.1E-15 1.4E-19 124.2 25.1 217 27-247 81-369 (710)
197 3hrp_A Uncharacterized protein 99.7 2.3E-14 8E-19 111.9 27.5 227 17-245 130-409 (409)
198 1qks_A Cytochrome CD1 nitrite 99.7 2E-14 6.9E-19 116.3 27.0 227 19-247 198-478 (567)
199 2qc5_A Streptogramin B lactona 99.7 2.3E-13 7.8E-18 101.7 30.6 224 17-244 19-258 (300)
200 3no2_A Uncharacterized protein 99.7 2.7E-15 9.1E-20 111.1 19.5 175 69-248 4-197 (276)
201 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-14 9.8E-19 115.4 26.7 215 27-246 165-421 (567)
202 2bkl_A Prolyl endopeptidase; m 99.7 3.4E-15 1.2E-19 124.4 21.4 216 26-245 76-348 (695)
203 3g4e_A Regucalcin; six bladed 99.7 8.1E-14 2.8E-18 104.4 25.6 212 18-234 13-260 (297)
204 3iuj_A Prolyl endopeptidase; h 99.7 9.5E-15 3.3E-19 121.6 21.6 230 14-248 125-407 (693)
205 1xip_A Nucleoporin NUP159; bet 99.7 4E-15 1.4E-19 114.2 17.1 174 18-233 38-231 (388)
206 2qc5_A Streptogramin B lactona 99.7 1E-12 3.4E-17 98.2 28.5 223 17-245 61-299 (300)
207 1rwi_B Serine/threonine-protei 99.6 2.6E-13 9E-18 100.0 22.3 187 18-206 67-267 (270)
208 2qe8_A Uncharacterized protein 99.6 3.7E-13 1.3E-17 102.9 22.7 218 18-236 17-311 (343)
209 1mda_H Methylamine dehydrogena 99.6 3.4E-13 1.2E-17 103.2 22.1 205 39-248 47-348 (368)
210 3dr2_A Exported gluconolactona 99.6 4.6E-13 1.6E-17 100.7 22.2 213 18-238 45-299 (305)
211 2ghs_A AGR_C_1268P; regucalcin 99.6 3.3E-12 1.1E-16 96.9 26.6 209 20-234 51-290 (326)
212 2ece_A 462AA long hypothetical 99.6 2.4E-12 8.2E-17 99.5 24.7 208 26-234 90-399 (462)
213 1yr2_A Prolyl oligopeptidase; 99.6 3.1E-13 1.1E-17 113.4 21.0 213 26-244 115-391 (741)
214 3sjl_D Methylamine dehydrogena 99.6 3.1E-12 1.1E-16 97.9 21.8 223 23-248 38-322 (386)
215 3g4e_A Regucalcin; six bladed 99.5 4.9E-12 1.7E-16 94.7 22.4 187 57-248 11-231 (297)
216 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.9E-12 9.9E-17 96.4 21.2 189 58-247 17-257 (314)
217 2mad_H Methylamine dehydrogena 99.5 7.1E-11 2.4E-15 91.1 27.1 222 24-248 27-309 (373)
218 3c75_H MADH, methylamine dehyd 99.5 9E-12 3.1E-16 97.0 20.7 220 27-248 82-361 (426)
219 3hrp_A Uncharacterized protein 99.5 7.1E-11 2.4E-15 92.3 25.9 182 59-247 131-355 (409)
220 2ghs_A AGR_C_1268P; regucalcin 99.5 1.2E-10 4.1E-15 88.3 24.5 180 60-244 50-258 (326)
221 1fwx_A Nitrous oxide reductase 99.5 1.1E-11 3.7E-16 99.0 18.7 208 27-246 99-361 (595)
222 1mda_H Methylamine dehydrogena 99.4 2.9E-12 9.8E-17 98.1 13.9 211 7-225 57-366 (368)
223 2qe8_A Uncharacterized protein 99.4 1.2E-10 4E-15 89.0 22.4 183 15-199 64-317 (343)
224 1kb0_A Quinohemoprotein alcoho 99.4 4.4E-11 1.5E-15 99.2 20.3 216 29-248 128-509 (677)
225 2iwa_A Glutamine cyclotransfer 99.4 4.9E-10 1.7E-14 81.5 22.5 203 7-246 10-237 (266)
226 2hz6_A Endoplasmic reticulum t 99.4 4.2E-14 1.4E-18 109.1 1.2 181 28-248 8-194 (369)
227 1xip_A Nucleoporin NUP159; bet 99.4 1.1E-11 3.9E-16 95.2 14.3 131 104-247 39-192 (388)
228 3dr2_A Exported gluconolactona 99.4 2.8E-10 9.6E-15 85.4 21.6 176 17-200 85-303 (305)
229 1npe_A Nidogen, entactin; glyc 99.4 2.2E-09 7.6E-14 78.9 24.6 207 18-228 36-263 (267)
230 1npe_A Nidogen, entactin; glyc 99.4 3.5E-09 1.2E-13 77.9 25.5 214 29-248 1-240 (267)
231 2ece_A 462AA long hypothetical 99.3 2.1E-09 7E-14 83.3 23.4 172 19-191 139-399 (462)
232 1yiq_A Quinohemoprotein alcoho 99.3 3.4E-10 1.2E-14 94.1 20.3 217 29-248 121-507 (689)
233 3iuj_A Prolyl endopeptidase; h 99.3 1.3E-10 4.6E-15 96.8 17.1 184 56-246 126-359 (693)
234 1kb0_A Quinohemoprotein alcoho 99.3 9.7E-10 3.3E-14 91.2 21.6 196 37-232 189-536 (677)
235 2fp8_A Strictosidine synthase; 99.3 1.3E-08 4.4E-13 76.9 24.9 224 18-246 19-313 (322)
236 2p4o_A Hypothetical protein; p 99.2 8.9E-08 3E-12 71.8 28.1 220 7-235 23-277 (306)
237 1fwx_A Nitrous oxide reductase 99.2 2.1E-09 7E-14 86.1 19.7 191 11-206 129-434 (595)
238 1yiq_A Quinohemoprotein alcoho 99.2 1.7E-09 5.8E-14 89.9 19.4 206 22-232 239-534 (689)
239 3qqz_A Putative uncharacterize 99.2 6.3E-08 2.2E-12 70.1 24.6 188 11-201 21-251 (255)
240 3nol_A Glutamine cyclotransfer 99.2 6.6E-09 2.2E-13 74.9 18.8 190 7-235 32-244 (262)
241 3q7m_A Lipoprotein YFGL, BAMB; 99.2 4.3E-08 1.5E-12 75.6 24.2 212 28-248 103-339 (376)
242 3q7m_A Lipoprotein YFGL, BAMB; 99.2 6.5E-08 2.2E-12 74.6 24.0 208 29-248 53-298 (376)
243 3nok_A Glutaminyl cyclase; bet 99.1 1.5E-08 5E-13 73.1 18.5 187 7-234 44-253 (268)
244 3hxj_A Pyrrolo-quinoline quino 99.1 2E-08 6.9E-13 75.8 19.4 207 28-246 107-324 (330)
245 3v64_C Agrin; beta propeller, 99.1 1.2E-06 4.2E-11 66.9 28.7 222 20-247 36-276 (349)
246 2iwa_A Glutamine cyclotransfer 99.1 6.1E-08 2.1E-12 70.6 19.8 164 49-248 10-183 (266)
247 2ad6_A Methanol dehydrogenase 99.1 2.1E-08 7.2E-13 81.6 18.7 216 29-248 115-496 (571)
248 2xe4_A Oligopeptidase B; hydro 99.1 4.3E-08 1.5E-12 82.4 21.1 100 19-121 175-289 (751)
249 3mbr_X Glutamine cyclotransfer 99.1 2.6E-07 8.7E-12 66.1 21.9 190 7-235 10-223 (243)
250 3v65_B Low-density lipoprotein 99.1 1.5E-06 5.3E-11 67.3 27.9 220 22-247 81-319 (386)
251 2fp8_A Strictosidine synthase; 99.0 1.3E-07 4.4E-12 71.4 21.0 183 60-244 20-267 (322)
252 1kv9_A Type II quinohemoprotei 99.0 4.2E-08 1.5E-12 81.4 18.8 218 29-248 117-490 (668)
253 2ism_A Putative oxidoreductase 99.0 9.6E-07 3.3E-11 67.5 24.9 213 18-234 31-333 (352)
254 3a9g_A Putative uncharacterize 99.0 2.3E-06 7.7E-11 65.5 26.2 217 17-234 28-330 (354)
255 1ijq_A LDL receptor, low-densi 99.0 3.9E-06 1.3E-10 63.2 28.9 214 30-247 2-239 (316)
256 4a2l_A BT_4663, two-component 99.0 3.7E-06 1.3E-10 71.4 28.6 223 18-246 263-526 (795)
257 4a2l_A BT_4663, two-component 99.0 8.1E-06 2.8E-10 69.3 30.6 222 17-246 356-614 (795)
258 3v64_C Agrin; beta propeller, 98.9 3.6E-06 1.2E-10 64.3 25.6 187 18-207 73-279 (349)
259 3nol_A Glutamine cyclotransfer 98.9 4.4E-07 1.5E-11 65.4 18.3 161 50-248 33-203 (262)
260 1w6s_A Methanol dehydrogenase 98.9 2.9E-07 1E-11 75.1 19.3 213 32-248 124-505 (599)
261 1k3i_A Galactose oxidase precu 98.9 1.2E-07 4E-12 78.7 17.0 225 22-247 190-498 (656)
262 3tc9_A Hypothetical hydrolase; 98.9 2.2E-06 7.4E-11 67.4 23.4 224 18-245 137-429 (430)
263 2hz6_A Endoplasmic reticulum t 98.9 3.9E-10 1.3E-14 86.9 2.1 139 69-248 8-151 (369)
264 3v65_B Low-density lipoprotein 98.9 2.6E-06 8.9E-11 66.0 23.3 190 18-210 116-325 (386)
265 3nok_A Glutaminyl cyclase; bet 98.9 9E-07 3.1E-11 63.9 18.9 160 50-248 45-212 (268)
266 1kv9_A Type II quinohemoprotei 98.9 6.8E-07 2.3E-11 74.2 20.7 80 154-233 437-519 (668)
267 1flg_A Protein (quinoprotein e 98.9 9.2E-07 3.1E-11 72.1 20.9 54 193-248 465-518 (582)
268 3sov_A LRP-6, low-density lipo 98.9 1.1E-05 3.6E-10 60.8 25.8 215 30-248 5-240 (318)
269 4hw6_A Hypothetical protein, I 98.9 1.5E-06 5E-11 68.4 21.0 185 17-202 181-432 (433)
270 3hxj_A Pyrrolo-quinoline quino 98.8 5.2E-07 1.8E-11 68.1 18.0 178 19-205 138-326 (330)
271 4hw6_A Hypothetical protein, I 98.8 3.2E-06 1.1E-10 66.5 22.8 224 18-245 139-432 (433)
272 3v9f_A Two-component system se 98.8 2.3E-05 7.9E-10 66.4 28.7 225 17-246 257-524 (781)
273 2p9w_A MAL S 1 allergenic prot 98.8 3.9E-06 1.3E-10 62.6 20.8 163 19-203 14-215 (334)
274 3mbr_X Glutamine cyclotransfer 98.8 3.8E-06 1.3E-10 60.0 20.0 161 50-248 11-181 (243)
275 2ad6_A Methanol dehydrogenase 98.8 2.1E-06 7.1E-11 69.9 20.9 80 154-233 443-524 (571)
276 1ijq_A LDL receptor, low-densi 98.8 1.7E-05 5.7E-10 59.7 24.8 186 18-206 30-241 (316)
277 3p5b_L Low density lipoprotein 98.8 2.3E-05 7.7E-10 61.0 28.5 216 30-247 84-321 (400)
278 3v9f_A Two-component system se 98.8 1.3E-05 4.3E-10 67.9 26.4 223 17-246 362-611 (781)
279 2p4o_A Hypothetical protein; p 98.8 1.5E-05 5E-10 59.7 23.8 175 18-194 72-279 (306)
280 3amr_A 3-phytase; beta-propell 98.8 5.7E-06 2E-10 62.2 20.9 188 22-245 30-262 (355)
281 3p5b_L Low density lipoprotein 98.8 2.5E-05 8.5E-10 60.8 25.3 190 17-209 111-326 (400)
282 1flg_A Protein (quinoprotein e 98.8 6E-06 2.1E-10 67.4 22.3 78 154-231 465-544 (582)
283 3kya_A Putative phosphatase; s 98.7 1.9E-05 6.6E-10 62.6 24.2 227 18-246 139-475 (496)
284 3tc9_A Hypothetical hydrolase; 98.7 1.2E-06 4.3E-11 68.7 17.5 157 60-245 138-300 (430)
285 3qqz_A Putative uncharacterize 98.7 2E-05 6.9E-10 57.0 24.1 189 54-246 22-253 (255)
286 1k3i_A Galactose oxidase precu 98.7 3.2E-06 1.1E-10 70.2 20.4 217 16-235 241-530 (656)
287 1w6s_A Methanol dehydrogenase 98.7 1.6E-05 5.3E-10 65.0 23.4 204 23-232 246-533 (599)
288 2g8s_A Glucose/sorbosone dehyd 98.7 1.7E-05 5.8E-10 60.6 22.3 222 17-239 17-347 (353)
289 3sov_A LRP-6, low-density lipo 98.6 5.4E-05 1.9E-09 57.0 23.9 186 19-207 36-242 (318)
290 2xbg_A YCF48-like protein; pho 98.6 5.8E-05 2E-09 57.1 25.6 216 18-243 80-319 (327)
291 3m0c_C LDL receptor, low-densi 98.6 0.00018 6.2E-09 60.7 27.6 215 30-247 396-633 (791)
292 4a0p_A LRP6, LRP-6, low-densit 98.6 0.00016 5.3E-09 59.6 29.4 214 29-247 6-238 (628)
293 2xe4_A Oligopeptidase B; hydro 98.6 1E-05 3.6E-10 68.1 19.4 177 60-244 175-398 (751)
294 3das_A Putative oxidoreductase 98.6 0.0001 3.5E-09 55.9 26.5 217 17-234 31-326 (347)
295 1n7d_A LDL receptor, low-densi 98.5 1.9E-06 6.5E-11 71.8 13.2 187 18-207 406-618 (699)
296 3m0c_C LDL receptor, low-densi 98.5 0.00021 7.3E-09 60.3 25.1 187 17-207 423-636 (791)
297 3kya_A Putative phosphatase; s 98.5 6.2E-05 2.1E-09 59.7 20.7 187 18-206 186-478 (496)
298 3s94_A LRP-6, low-density lipo 98.5 0.00017 6E-09 59.3 23.3 198 16-247 38-244 (619)
299 4a0p_A LRP6, LRP-6, low-densit 98.4 0.00047 1.6E-08 56.8 26.2 187 17-206 36-240 (628)
300 1n7d_A LDL receptor, low-densi 98.4 3.4E-06 1.2E-10 70.3 12.4 213 31-247 379-615 (699)
301 3sre_A PON1, serum paraoxonase 98.4 0.00016 5.6E-09 55.0 19.7 175 60-234 51-285 (355)
302 2xbg_A YCF48-like protein; pho 98.4 0.00035 1.2E-08 52.7 29.7 217 17-239 35-272 (327)
303 2p9w_A MAL S 1 allergenic prot 98.0 0.00094 3.2E-08 50.0 16.7 166 60-245 14-214 (334)
304 3pbp_A Nucleoporin NUP82; beta 98.0 0.0027 9.1E-08 49.2 19.4 161 69-241 31-207 (452)
305 3s25_A Hypothetical 7-bladed b 98.0 0.0025 8.6E-08 47.5 19.6 199 26-244 22-253 (302)
306 2ism_A Putative oxidoreductase 97.9 0.0043 1.5E-07 47.3 22.7 183 59-245 31-296 (352)
307 3sre_A PON1, serum paraoxonase 97.8 0.0051 1.7E-07 46.8 18.3 182 20-201 52-296 (355)
308 2vpj_A Kelch-like protein 12; 97.8 0.0046 1.6E-07 45.8 20.8 214 28-247 14-279 (301)
309 3pbp_A Nucleoporin NUP82; beta 97.8 0.00099 3.4E-08 51.5 13.6 107 18-124 66-203 (452)
310 2xzh_A Clathrin heavy chain 1; 97.8 0.0064 2.2E-07 45.4 25.6 203 37-248 48-292 (365)
311 3s94_A LRP-6, low-density lipo 97.7 0.013 4.6E-07 48.2 26.8 183 18-204 349-552 (619)
312 1tl2_A L10, protein (tachylect 97.7 0.0028 9.4E-08 44.5 13.9 99 18-120 41-152 (236)
313 1cru_A Protein (soluble quinop 97.6 0.015 5.3E-07 45.9 28.4 106 17-122 26-163 (454)
314 3ei3_A DNA damage-binding prot 97.6 0.035 1.2E-06 49.2 24.8 222 20-248 329-593 (1158)
315 1bpo_A Protein (clathrin); cla 97.5 0.021 7.2E-07 44.5 25.8 204 37-248 47-291 (494)
316 2wg3_C Hedgehog-interacting pr 97.4 0.028 9.4E-07 44.5 26.8 106 18-123 14-159 (463)
317 3ii7_A Kelch-like protein 7; p 97.4 0.022 7.4E-07 42.3 21.2 211 30-247 13-273 (306)
318 1tl2_A L10, protein (tachylect 97.4 0.014 4.7E-07 41.0 13.7 160 70-239 4-203 (236)
319 2xn4_A Kelch-like protein 2; s 97.4 0.024 8.1E-07 42.0 20.9 213 28-247 15-277 (302)
320 3s25_A Hypothetical 7-bladed b 97.4 0.025 8.6E-07 42.1 16.3 200 23-243 58-290 (302)
321 2be1_A Serine/threonine-protei 97.3 0.0049 1.7E-07 46.5 11.8 130 71-200 11-181 (339)
322 1zgk_A Kelch-like ECH-associat 97.3 0.031 1.1E-06 41.5 21.5 214 26-247 22-288 (308)
323 2xzh_A Clathrin heavy chain 1; 97.2 0.036 1.2E-06 41.5 26.6 218 22-244 71-330 (365)
324 2g8s_A Glucose/sorbosone dehyd 97.2 0.045 1.5E-06 41.7 21.5 61 59-120 18-86 (353)
325 3ei3_A DNA damage-binding prot 97.2 0.12 4E-06 45.9 26.6 213 18-234 514-755 (1158)
326 3a9g_A Putative uncharacterize 97.1 0.051 1.7E-06 41.4 24.3 182 59-245 29-295 (354)
327 1bpo_A Protein (clathrin); cla 97.1 0.062 2.1E-06 41.9 26.9 218 22-244 70-329 (494)
328 3das_A Putative oxidoreductase 97.1 0.06 2E-06 40.9 20.2 62 58-119 31-99 (347)
329 1xi4_A Clathrin heavy chain; a 97.0 0.19 6.4E-06 45.4 20.4 185 22-210 70-296 (1630)
330 2be1_A Serine/threonine-protei 97.0 0.022 7.6E-07 43.0 12.2 177 29-207 11-235 (339)
331 1xi4_A Clathrin heavy chain; a 96.9 0.19 6.6E-06 45.2 18.4 204 37-248 47-291 (1630)
332 2uvk_A YJHT; unknown function, 96.8 0.1 3.6E-06 39.5 21.1 92 28-122 19-127 (357)
333 1cru_A Protein (soluble quinop 96.8 0.13 4.6E-06 40.6 24.2 63 59-121 27-98 (454)
334 3sbq_A Nitrous-oxide reductase 96.8 0.16 5.4E-06 41.0 23.8 208 37-245 79-407 (638)
335 3amr_A 3-phytase; beta-propell 96.6 0.16 5.6E-06 38.4 17.0 139 70-244 40-208 (355)
336 4asc_A Kelch repeat and BTB do 96.5 0.15 5.2E-06 37.9 21.4 206 37-247 12-278 (315)
337 3ott_A Two-component system se 96.3 0.44 1.5E-05 40.3 27.0 217 17-246 21-260 (758)
338 3ii7_A Kelch-like protein 7; p 96.0 0.29 9.8E-06 36.1 20.7 173 28-205 55-274 (306)
339 4hvt_A Ritya.17583.B, post-pro 95.8 0.7 2.4E-05 38.8 19.3 223 22-245 133-429 (711)
340 2vpj_A Kelch-like protein 12; 95.6 0.45 1.6E-05 34.9 20.9 174 28-205 62-280 (301)
341 2zwa_A Leucine carboxyl methyl 95.5 0.95 3.3E-05 37.9 18.9 66 27-92 396-480 (695)
342 2xn4_A Kelch-like protein 2; s 95.4 0.54 1.8E-05 34.6 21.0 174 28-205 61-278 (302)
343 3ott_A Two-component system se 95.3 1.1 3.9E-05 37.8 30.4 221 18-246 324-586 (758)
344 1zgk_A Kelch-like ECH-associat 95.3 0.62 2.1E-05 34.4 19.1 172 28-205 70-289 (308)
345 4asc_A Kelch repeat and BTB do 95.2 0.63 2.2E-05 34.5 19.2 178 24-206 41-280 (315)
346 2uvk_A YJHT; unknown function, 95.0 0.83 2.8E-05 34.5 18.5 32 180-211 313-350 (357)
347 2zwa_A Leucine carboxyl methyl 94.4 2 6.8E-05 36.0 15.9 100 22-122 445-559 (695)
348 2woz_A Kelch repeat and BTB do 94.3 1.2 4E-05 33.1 21.3 207 36-247 22-288 (318)
349 3q6k_A 43.2 kDa salivary prote 93.9 1.7 5.7E-05 33.5 21.0 148 17-164 86-306 (381)
350 2woz_A Kelch repeat and BTB do 93.3 1.8 6.3E-05 32.0 15.8 64 28-93 109-188 (318)
351 3sbq_A Nitrous-oxide reductase 92.8 3.3 0.00011 33.7 23.2 173 28-203 141-408 (638)
352 3b7f_A Glycosyl hydrolase, BNR 90.8 4.5 0.00015 31.0 23.8 67 18-85 55-143 (394)
353 3zwu_A Alkaline phosphatase PH 90.5 0.73 2.5E-05 37.7 6.7 59 175-233 478-548 (592)
354 4a9v_A PHOX; hydrolase, beta-p 90.5 0.85 2.9E-05 37.0 6.9 60 174-233 477-548 (592)
355 4a9v_A PHOX; hydrolase, beta-p 90.5 2.6 8.9E-05 34.3 9.6 61 17-77 475-549 (592)
356 3zwu_A Alkaline phosphatase PH 89.2 2.5 8.7E-05 34.6 8.9 58 19-76 477-548 (592)
357 3qhy_B Beta-lactamase inhibito 89.1 5.2 0.00018 29.2 21.8 208 17-244 23-244 (282)
358 4gq2_M Nucleoporin NUP120; bet 88.5 6 0.0002 34.6 11.2 39 60-98 237-275 (950)
359 2wg3_C Hedgehog-interacting pr 88.3 8.2 0.00028 30.6 18.0 55 59-113 14-79 (463)
360 3no0_A DNA gyrase subunit A; D 85.7 8.5 0.00029 28.0 19.4 187 25-245 32-245 (276)
361 4gq2_M Nucleoporin NUP120; bet 84.1 5.7 0.00019 34.8 8.8 33 216-248 236-268 (950)
362 4fhn_B Nucleoporin NUP120; pro 82.9 5.9 0.0002 35.4 8.6 38 61-98 240-277 (1139)
363 3f7f_A Nucleoporin NUP120; nuc 81.8 14 0.00048 31.1 9.8 37 60-98 223-259 (729)
364 3b7f_A Glycosyl hydrolase, BNR 73.8 27 0.00094 26.6 24.4 63 137-200 180-259 (394)
365 4fhn_B Nucleoporin NUP120; pro 71.6 2.8 9.5E-05 37.4 3.3 32 217-248 239-270 (1139)
366 1suu_A DNA gyrase subunit A; t 67.9 34 0.0012 25.3 22.9 178 68-246 6-231 (312)
367 3q6k_A 43.2 kDa salivary prote 65.5 44 0.0015 25.7 19.1 217 18-234 26-342 (381)
368 3f7f_A Nucleoporin NUP120; nuc 65.1 8.6 0.00029 32.3 4.6 30 217-248 223-252 (729)
369 1q47_A Semaphorin 3A; beta pro 64.1 28 0.00097 27.8 7.3 56 186-241 423-487 (495)
370 1zi0_A DNA gyrase subunit A; b 60.8 48 0.0016 24.5 21.9 102 144-245 108-225 (307)
371 1sqj_A OXG-RCBH, oligoxylogluc 59.5 84 0.0029 26.9 23.7 60 16-76 13-82 (789)
372 3al9_A Plexin-A2; beta-propell 56.5 18 0.00062 29.3 5.1 57 185-241 414-476 (539)
373 3ol2_B Plexin-B1; beta-propell 55.1 36 0.0012 27.5 6.5 56 186-241 402-461 (528)
374 3l6v_A GYRA, DNA gyrase subuni 54.7 69 0.0024 24.5 22.6 179 67-246 4-265 (370)
375 2cn3_A Xyloglucanase, beta-1,4 54.2 1E+02 0.0034 26.1 12.0 103 18-121 23-151 (737)
376 1q47_A Semaphorin 3A; beta pro 52.3 72 0.0025 25.5 7.8 54 72-125 423-484 (495)
377 3mez_B Mannose-specific lectin 51.4 39 0.0013 20.5 10.9 26 106-132 59-84 (113)
378 3al9_A Plexin-A2; beta-propell 49.7 69 0.0024 26.0 7.4 65 61-125 402-473 (539)
379 3nvq_A Semaphorin-7A; beta-pro 48.8 55 0.0019 26.9 6.7 56 186-241 382-444 (590)
380 3a0c_A Mannose/sialic acid-bin 44.0 51 0.0017 19.8 11.1 42 107-149 54-97 (110)
381 4gz8_A Semaphorin-3A; multi-do 43.9 76 0.0026 26.6 6.9 56 186-241 431-495 (667)
382 3mez_A Mannose-specific lectin 43.2 53 0.0018 19.8 8.4 26 106-131 52-77 (111)
383 1b2p_A Protein (lectin); manno 42.6 57 0.002 20.0 11.2 42 107-149 64-107 (119)
384 3nvq_A Semaphorin-7A; beta-pro 41.0 1.5E+02 0.0052 24.4 8.1 56 71-126 381-442 (590)
385 3mez_B Mannose-specific lectin 40.1 61 0.0021 19.6 10.8 44 107-150 27-72 (113)
386 4hvt_A Ritya.17583.B, post-pro 39.5 1.7E+02 0.0059 24.7 18.8 183 61-246 131-381 (711)
387 4h3o_A Lectin; cadmium, plant 37.1 67 0.0023 19.2 11.0 43 107-150 54-98 (105)
388 1olz_A Semaphorin 4D; developm 35.3 1.1E+02 0.0039 25.6 6.7 56 186-241 417-477 (663)
389 4gz8_A Semaphorin-3A; multi-do 34.6 1.7E+02 0.0057 24.6 7.5 57 71-127 430-494 (667)
390 3qhy_B Beta-lactamase inhibito 29.3 1.6E+02 0.0055 21.2 21.7 190 19-228 64-266 (282)
391 1zso_A Hypothetical protein; s 28.7 1E+02 0.0034 20.5 4.4 30 218-247 112-141 (164)
392 1xks_A Nuclear pore complex pr 28.6 2.2E+02 0.0075 22.5 12.6 98 148-247 111-238 (450)
393 3oky_A Plexin-A2; transmembran 27.7 1E+02 0.0035 25.9 5.2 57 185-241 413-475 (681)
394 1uhe_A Aspartate 1-decarboxyla 27.1 95 0.0032 18.4 3.6 28 80-107 17-44 (97)
395 1b2p_A Protein (lectin); manno 25.5 1.2E+02 0.0041 18.5 10.9 55 176-246 63-117 (119)
396 3uc1_A DNA gyrase subunit A; D 23.4 2.3E+02 0.008 21.1 23.1 103 144-246 108-228 (327)
397 3llp_A Fascin; beta-trefoil, a 22.5 3E+02 0.01 22.1 18.9 55 19-74 58-113 (493)
398 1suu_A DNA gyrase subunit A; t 22.2 2.4E+02 0.0082 20.8 25.6 175 27-203 6-231 (312)
399 3plx_B Aspartate 1-decarboxyla 21.8 1.3E+02 0.0045 18.0 3.5 26 80-105 18-43 (102)
400 3oky_A Plexin-A2; transmembran 21.6 3.1E+02 0.01 23.2 6.9 55 71-125 413-472 (681)
401 3ol2_B Plexin-B1; beta-propell 21.6 3.3E+02 0.011 22.1 8.3 65 60-125 388-458 (528)
402 1olz_A Semaphorin 4D; developm 21.2 3.3E+02 0.011 22.8 7.1 52 147-198 417-477 (663)
403 3oky_B Putative uncharacterize 20.3 2.1E+02 0.0073 23.4 5.6 27 215-241 469-495 (565)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-45 Score=277.02 Aligned_cols=231 Identities=14% Similarity=0.195 Sum_probs=203.4
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|.+.|.+++|+|++++|++++ |+.|++||+.+++....+..|..+|.+++|+|++++|++|+.|++|++||+.+++.+
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 90 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEE
Confidence 5788999999999999999987 999999999999999999999999999999999999999999999999999998854
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCC-CCCEEEEEcCCCeEEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-----------DYEPSSISLDH-EHGLVAVGGADSKISIV 160 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 160 (248)
..+.+|...|.+++|+|++++|++++.|+ +++|+++. ...+.+++|+| ++..+++++.|+.|++|
T Consensus 91 --~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iw 168 (304)
T 2ynn_A 91 --VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (304)
T ss_dssp --EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred --EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 56788999999999999999999999887 59999753 34567899999 67899999999999999
Q ss_pred ECC--ceeeeec--ccCCCceEEEcC--CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 161 ENG--AKVSSLP--IDYEPSSISLDH--EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 161 ~~~--~~~~~~~--~~~~~~~~~~s~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
|.. .....+. +...+..+.++| ++.+|++|+.|+.|++||+++++.+..+. +|...|.+++|+|++++|++++
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s 247 (304)
T 2ynn_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGS 247 (304)
T ss_dssp ETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEE
T ss_pred ECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC-CCCCCEEEEEECCCCCEEEEEc
Confidence 943 2333332 335577888876 77899999999999999999988766554 7999999999999999999999
Q ss_pred CCCeEEEEECCCCC
Q psy16005 235 AHRKVVLYRVPDFE 248 (248)
Q Consensus 235 ~d~~i~vw~~~~~~ 248 (248)
.||.|++||+.+++
T Consensus 248 ~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 248 EDGTLKIWNSSTYK 261 (304)
T ss_dssp TTSCEEEEETTTCC
T ss_pred CCCeEEEEECCCCc
Confidence 99999999998764
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.3e-45 Score=299.73 Aligned_cols=247 Identities=31% Similarity=0.520 Sum_probs=215.2
Q ss_pred CC-cCcceecccccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC
Q psy16005 1 MS-YSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS 79 (248)
Q Consensus 1 m~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 79 (248)
|+ ++++..++..|..+++.+.+++|+|||++|++++++.+++|++.+++....+.+|...|++++|+|+|++||+|+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d 80 (611)
T 1nr0_A 1 MSEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 80 (611)
T ss_dssp -CCCEEEEEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCccccccEECCCCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCC
Confidence 66 78888999999999999999999999999999998899999999888889999999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-----EEEEEcc--------CCCCCceeEeCCCCC
Q psy16005 80 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-----AKVSSLP--------IDYEPSSISLDHEHG 146 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----~~i~~~~--------~~~~~~~~~~~~~~~ 146 (248)
|+|+|||+.+++......+..|...|.+++|+|+++.|++++.+. +++|+.. +...+.+++|+|++.
T Consensus 81 ~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~ 160 (611)
T 1nr0_A 81 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 160 (611)
T ss_dssp SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSS
T ss_pred CCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCC
Confidence 999999998766555567788999999999999999999988653 4566532 234678999999987
Q ss_pred -EEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc------cCCc
Q psy16005 147 -LVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL------DHLG 216 (248)
Q Consensus 147 -~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~ 216 (248)
.+++++.|+.+++|| .++....+. +...+.+++|+|++++|++|+.|+.|++||+.+++....+.. +|.+
T Consensus 161 ~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC
Confidence 699999999999999 344455554 556789999999999999999999999999988876544422 6999
Q ss_pred CeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 217 PVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 217 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.|.+++|+|++++|++++.|++|++||++++
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 9999999999999999999999999999875
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.7e-44 Score=280.08 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=206.5
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+|.++|++++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.+++.+
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 185 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 5889999999999999999987 999999999999999999999999999999999999999999999999999988754
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
..+.+|...|.+++|+|++++|++++.++ +++|++... ..+..+.++|++.++++++.|+.|++||
T Consensus 186 --~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 186 --RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp --ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred --EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 67788999999999999999999999887 499998643 3467788999999999999999999999
Q ss_pred -CCceeeeec-ccCCCceEEEcCC--------------------CCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 162 -NGAKVSSLP-IDYEPSSISLDHE--------------------HGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 162 -~~~~~~~~~-~~~~~~~~~~s~~--------------------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
.++....+. +...+.+++|+|+ +.+|++|+.|+.|++||+++++....+. +|...|+
T Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~v~ 342 (410)
T 1vyh_C 264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVR 342 (410)
T ss_dssp TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEE
T ss_pred CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-CCCCcEE
Confidence 444555553 5667899999996 6789999999999999999988765554 7999999
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+++|+|++++|++++.|+.|++||+.+++
T Consensus 343 ~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 343 GVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp EEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999999999999999999998753
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-43 Score=267.12 Aligned_cols=229 Identities=15% Similarity=0.218 Sum_probs=205.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|...|.+++|+|++..+++++ |+.|++||+.+++....+..|...+.+++|+|++++|++++.||.|++||+++++.
T Consensus 77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 46889999999999999999987 99999999999999999989999999999999999999999999999999998885
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
. ..+..|...+.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+.|++||
T Consensus 157 ~--~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd 234 (321)
T 3ow8_A 157 E--YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234 (321)
T ss_dssp E--EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred e--EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 4 56667788999999999999999999877 59999753 35678999999999999999999999999
Q ss_pred --CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 162 --NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 162 --~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
.++....+. +...+.+++|+|++++|++++.|+.|++||+++++.+..+. +|...|.+++|+|++++|++++.|+.
T Consensus 235 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 235 VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred CCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 445555554 45668999999999999999999999999999988766554 79999999999999999999999999
Q ss_pred EEEEECC
Q psy16005 239 VVLYRVP 245 (248)
Q Consensus 239 i~vw~~~ 245 (248)
|++||+.
T Consensus 314 i~vwd~p 320 (321)
T 3ow8_A 314 IHIYDCP 320 (321)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999974
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-43 Score=266.83 Aligned_cols=231 Identities=17% Similarity=0.245 Sum_probs=200.9
Q ss_pred ccccCCcEEEEeCCC----CCEEEEeC-CcEEEEEecCCCce--eeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 14 RTQRGQPIVLGGDPK----GKNFLYTN-GNSVIIRNIENPAI--SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~----~~~l~~~~-~~~v~v~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
..|.+.|.+++|+|+ +.+|++|+ |+.|++|++..++. ...+.+|...|.+++|+|++.++++++.|++|++||
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 569999999999985 56899887 99999999987654 345789999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCC
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
+.+++.+ ..+..+...+.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+
T Consensus 109 ~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg 186 (321)
T 3ow8_A 109 LENGKQI--KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186 (321)
T ss_dssp TTTTEEE--EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCEE--EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCC
Confidence 9998855 45667788899999999999999999877 58999753 23467899999999999999999
Q ss_pred eEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 156 KISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
.|++|| .++.+..+. +...+.+++|+|++++|++|+.|+.|++||+++++....+. +|...|.+++|+|++++|++
T Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEE
T ss_pred eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEE
Confidence 999999 556666665 55678999999999999999999999999999887755444 79999999999999999999
Q ss_pred EcCCCeEEEEECCCC
Q psy16005 233 SDAHRKVVLYRVPDF 247 (248)
Q Consensus 233 ~~~d~~i~vw~~~~~ 247 (248)
++.|+.|++||++++
T Consensus 266 ~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 266 SSSDKSVKVWDVGTR 280 (321)
T ss_dssp EETTSCEEEEETTTT
T ss_pred EeCCCcEEEEeCCCC
Confidence 999999999999875
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=270.82 Aligned_cols=228 Identities=16% Similarity=0.189 Sum_probs=190.2
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeee----eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI----YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
+...|.+++|+|++.++..+.||.|+|||+.+++.... ..+|.+.|++++|+|++++|++|+.||+|++||+++++
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV 160 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 45679999999997655555699999999998876543 34899999999999999999999999999999999988
Q ss_pred eeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-EEEEEccCCC------------CCceeEeCCC-CCEEEEEcCCCe
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG-AKVSSLPIDY------------EPSSISLDHE-HGLVAVGGADSK 156 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~-~~i~~~~~~~------------~~~~~~~~~~-~~~~~~~~~~~~ 156 (248)
.+ ..+.+|...|.+++|+|++. .|++++.|+ +++|+++... .+.+++++|+ ++++++++.|+.
T Consensus 161 ~~--~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 161 VL--SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp EE--EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred EE--EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 54 67789999999999999885 678888766 6999986432 3567888885 568899999999
Q ss_pred EEEEE--CCceeeeec-ccCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEE
Q psy16005 157 ISIVE--NGAKVSSLP-IDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLV 231 (248)
Q Consensus 157 i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 231 (248)
|++|| .++.+..+. +...+.+++|+|++ ++|++|+.|+.|+|||+++++... ..+|.+.|++++|+|+++ +|+
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~--~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR--SQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp EEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE--ECCCSSCEEEEEECSSSTTEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE--EcCCCCCEEEEEEeCCCCeEEE
Confidence 99999 556666665 56678999999998 579999999999999999887642 347999999999999987 567
Q ss_pred EEcCCCeEEEEECCCC
Q psy16005 232 ASDAHRKVVLYRVPDF 247 (248)
Q Consensus 232 ~~~~d~~i~vw~~~~~ 247 (248)
+++.|++|++|++.+.
T Consensus 317 s~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 317 TVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEETTSCEEEEECCC-
T ss_pred EEcCCCeEEEEECCCC
Confidence 8999999999999764
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.5e-43 Score=274.08 Aligned_cols=228 Identities=14% Similarity=0.186 Sum_probs=203.3
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+|.+.|.+++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||++++..+
T Consensus 148 ~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 5888999999999999999987 999999999999999999999999999999999999999999999999999998854
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCC------------------
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHE------------------ 144 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~------------------ 144 (248)
..+.+|...+.++.|+|+++++++++.++ +++|++.. ...+.+++|+|+
T Consensus 228 --~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 228 --KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp --EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred --EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 56778999999999999999999999877 59999753 345678889886
Q ss_pred --CCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 145 --HGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 145 --~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
+.++++++.|+.|++|| .+..+..+. +...+.+++|+|++++|++|+.|+.|++||+++++....+. +|...|+
T Consensus 306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-~h~~~v~ 384 (410)
T 1vyh_C 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVT 384 (410)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEE
Confidence 67899999999999999 455666554 55668999999999999999999999999999888766554 7999999
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+++|+|++++|++++.|+.|++|+++
T Consensus 385 ~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 385 SLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999874
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-41 Score=260.74 Aligned_cols=234 Identities=17% Similarity=0.225 Sum_probs=200.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.+++|+|++++|++++ |+.|++||+.+++....+..|...|.+++|+|++++|++|+.|+.|++|++.+++.
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence 35889999999999999999987 99999999999999999999999999999999999999999999999999987542
Q ss_pred --eeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 93 --ILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 93 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
.....+.+|...+.++.|++++. +++++.+ .+++|++.. ...+.+++++|+++++++++.|+.|++
T Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~ 210 (340)
T 1got_B 132 NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210 (340)
T ss_dssp SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 23356778999999999999887 5555554 579999753 356788999999999999999999999
Q ss_pred EE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 160 VE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 160 ~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
|| .+.....+. +...+.+++|+|++++|++|+.|+.|++||+++++....... .+...|.+++|+|++++|++++.
T Consensus 211 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 290 (340)
T 1got_B 211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp EETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC
Confidence 99 455555665 566789999999999999999999999999998776443321 23457999999999999999999
Q ss_pred CCeEEEEECCCCC
Q psy16005 236 HRKVVLYRVPDFE 248 (248)
Q Consensus 236 d~~i~vw~~~~~~ 248 (248)
|+.|++||+.+++
T Consensus 291 d~~i~vwd~~~~~ 303 (340)
T 1got_B 291 DFNCNVWDALKAD 303 (340)
T ss_dssp TSEEEEEETTTCC
T ss_pred CCeEEEEEcccCc
Confidence 9999999987753
No 9
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-41 Score=255.83 Aligned_cols=232 Identities=19% Similarity=0.197 Sum_probs=193.8
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC--CceeeeeecCCcceEEEEECc--CCcEEEEEccCCeEEEEECC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN--PAISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~--~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~ 88 (248)
.+|.+.|.+++|+|+|++|++++ |+.|++|++.+ .+....+.+|.++|.+++|+| ++++|++|+.||+|++||++
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 46889999999999999999987 99999999874 356778889999999999986 48999999999999999998
Q ss_pred CCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC------------CCCceeEeCCC---------
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID------------YEPSSISLDHE--------- 144 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~--------- 144 (248)
+++......+..|...|.+++|+|+ +++|++++.++ +++|+++.. ..+.+++|+|+
T Consensus 86 ~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--------
T ss_pred CCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCC
Confidence 8754334566789999999999997 88999999887 599998643 23567888886
Q ss_pred ----CCEEEEEcCCCeEEEEE--CCc----eeeeec-ccCCCceEEEcCCC---CEEEEEcCCCcEEEEEcCCCCCC--C
Q psy16005 145 ----HGLVAVGGADSKISIVE--NGA----KVSSLP-IDYEPSSISLDHEH---GLVAVGGADSKVHIYELNNKSLS--P 208 (248)
Q Consensus 145 ----~~~~~~~~~~~~i~~~~--~~~----~~~~~~-~~~~~~~~~~s~~~---~~l~~~~~d~~v~i~d~~~~~~~--~ 208 (248)
+++|++++.|+.|++|| .++ ....+. +...+.+++|+|++ .+|++++.|+.|++||+++.... .
T Consensus 166 ~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~ 245 (297)
T 2pm7_B 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKK 245 (297)
T ss_dssp ----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE
T ss_pred CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccce
Confidence 57999999999999999 333 333444 56678999999985 79999999999999999875421 1
Q ss_pred ccc--ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 209 KAE--LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 209 ~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
... ..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 246 ~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 246 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 111 3578899999999999999999999999999976
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-41 Score=264.85 Aligned_cols=234 Identities=12% Similarity=0.164 Sum_probs=190.9
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC----
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV---- 88 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---- 88 (248)
.+|.+.|.+++|+|++++|++++ |+.|++||+.+++....+..|...|.+++|+|++++|++|+.|+.+++||+.
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~ 142 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD 142 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence 46899999999999999999997 9999999999998888888888888888888887777766666666666653
Q ss_pred ----------------------------------------------CCceeeee---eccCCCCCeeEEEEec-CCCEEE
Q psy16005 89 ----------------------------------------------NKEHILKN---EFHPIGGPIKDIAWSP-DNQRMI 118 (248)
Q Consensus 89 ----------------------------------------------~~~~~~~~---~~~~~~~~v~~~~~~~-~~~~l~ 118 (248)
+++.+... ...+|...|.+++|++ ++++|+
T Consensus 143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 222 (380)
T 3iz6_a 143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222 (380)
T ss_dssp CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence 33222111 0146788899999987 889999
Q ss_pred EEeCCc-EEEEEccC-----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeeccc--------CCCc
Q psy16005 119 SIVENG-AKVSSLPI-----------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPID--------YEPS 176 (248)
Q Consensus 119 ~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~--------~~~~ 176 (248)
+++.|+ +++|+++. ...+.+++|+|+++++++++.|+.|++|| .++.+..+... ..+.
T Consensus 223 sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~ 302 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT 302 (380)
T ss_dssp EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCS
T ss_pred EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceE
Confidence 999777 59999852 34678999999999999999999999999 45555554322 1368
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc---cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 177 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA---ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+++|+|+|++|++|+.||.|++||+.+++....+ ..+|.+.|.+++|+|+|++|++++.|+.|++|++...
T Consensus 303 ~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 303 SVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999999999999999999887764333 2369999999999999999999999999999999765
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-42 Score=267.55 Aligned_cols=228 Identities=16% Similarity=0.196 Sum_probs=187.6
Q ss_pred cccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceee----eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD----IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
.|...|.+++|+|++++++++.|+.|++||+.+++... ...+|...|.+++|+|++++|++|+.||.|++||++++
T Consensus 92 ~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~ 171 (357)
T 4g56_B 92 QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171 (357)
T ss_dssp ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 47788999999999988887789999999998876543 23479999999999999999999999999999999998
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-EEEEEccCC------------CCCceeEeCCC-CCEEEEEcCCC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG-AKVSSLPID------------YEPSSISLDHE-HGLVAVGGADS 155 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~ 155 (248)
+.+ ..+..|...|.+++|+|++. .+++++.++ +++|+++.. ..+.+++|+|+ +.++++++.|+
T Consensus 172 ~~~--~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 172 AVL--KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp EEE--EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred cEE--EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 854 66788999999999999875 677887766 699998532 23568899997 46889999999
Q ss_pred eEEEEE--CCceeeeec-ccCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC-CCcEE
Q psy16005 156 KISIVE--NGAKVSSLP-IDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP-SNEYL 230 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 230 (248)
.|++|| .++.+..+. +...+.+++|+|++ ++|++|+.|+.|+|||+++++.... .+|.+.|++++|+| ++++|
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~--~~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD--LSHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE--CCCSSCEEEEEECSSSTTEE
T ss_pred ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE--CCCCCCEEEEEEeCCCCCEE
Confidence 999999 455566665 45678999999987 5799999999999999999876533 37999999999999 78999
Q ss_pred EEEcCCCeEEEEECCC
Q psy16005 231 VASDAHRKVVLYRVPD 246 (248)
Q Consensus 231 ~~~~~d~~i~vw~~~~ 246 (248)
++++.||+|++|++.+
T Consensus 328 ~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEETTSCEEEEECC-
T ss_pred EEEcCCCeEEEEECCC
Confidence 9999999999999865
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-41 Score=279.56 Aligned_cols=234 Identities=21% Similarity=0.293 Sum_probs=197.6
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee-------cCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT-------EHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
..|.+.|.+++|+|+|++|++++ |+.|++||+.+++....+. +|.+.|.+++|+|++++|++++.|++|++|
T Consensus 187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 35889999999999999999987 9999999999988877774 799999999999999999999999999999
Q ss_pred ECCCCceeee-----------------------------------------eeccCCCCCeeEEEEecCCCEEEEEeCCc
Q psy16005 86 DTVNKEHILK-----------------------------------------NEFHPIGGPIKDIAWSPDNQRMISIVENG 124 (248)
Q Consensus 86 d~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 124 (248)
|+.+++.+.. ..+.+|...|.+++|+|++++|++++.++
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 9987654321 23457899999999999999999999776
Q ss_pred -EEEEEccCC----------------------------------------------------------------------
Q psy16005 125 -AKVSSLPID---------------------------------------------------------------------- 133 (248)
Q Consensus 125 -~~i~~~~~~---------------------------------------------------------------------- 133 (248)
+++|++...
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~ 426 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 426 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence 588986421
Q ss_pred ----------------------CCCceeEeCCCCCEEEEEcCCCeEEEEEC--Cce--eeeecccCCCceEEEcCCCCEE
Q psy16005 134 ----------------------YEPSSISLDHEHGLVAVGGADSKISIVEN--GAK--VSSLPIDYEPSSISLDHEHGLV 187 (248)
Q Consensus 134 ----------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~~~~~~~~~~~~~~~s~~~~~l 187 (248)
..+.+++++|+++++++++.|+.|++||. +.. .....+...+.+++|+|||++|
T Consensus 427 ~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~l 506 (611)
T 1nr0_A 427 VAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 506 (611)
T ss_dssp EEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred EEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEE
Confidence 11246788999999999999999999993 221 2334567789999999999999
Q ss_pred EEEcCCCcEEEEEcCC-CCCCCc-ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 188 AVGGADSKVHIYELNN-KSLSPK-AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 188 ~~~~~d~~v~i~d~~~-~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
++++.|+.|++||+.+ ++.... ....|...|.+++|+|||++|++++.|++|++|+++++
T Consensus 507 as~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp EEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred EEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 9999999999999987 554433 23249999999999999999999999999999999865
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-41 Score=260.52 Aligned_cols=225 Identities=13% Similarity=0.188 Sum_probs=196.7
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc----eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA----ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|...|.+++|+|+++++++++ |+.+++|++.+.+ ....+.+|...|.++.|++++. +++++.|++|++||+++
T Consensus 95 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~ 173 (340)
T 1got_B 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET 173 (340)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT
T ss_pred cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC
Confidence 4678899999999999999987 9999999998753 4556779999999999998875 88999999999999999
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
++.. ..+.+|...|.+++|+|+++++++++.++ +++|+++. ...+.+++|+|+++++++++.|+.|+
T Consensus 174 ~~~~--~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 174 GQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp TEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcEE--EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence 8754 56778999999999999999999999776 69999753 34578899999999999999999999
Q ss_pred EEEC--Cceeeeeccc---CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 159 IVEN--GAKVSSLPID---YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 159 ~~~~--~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
+||. ++.+..+.+. ..+.+++|+|++++|++|+.|+.|++||+.+++....+. +|...|.+++|+|++++|+++
T Consensus 252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~ 330 (340)
T 1got_B 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSCEEEE
T ss_pred EEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCCEEEEE
Confidence 9993 4455555443 357899999999999999999999999999887765544 899999999999999999999
Q ss_pred cCCCeEEEEE
Q psy16005 234 DAHRKVVLYR 243 (248)
Q Consensus 234 ~~d~~i~vw~ 243 (248)
+.|+.|++||
T Consensus 331 s~D~~i~iWd 340 (340)
T 1got_B 331 SWDSFLKIWN 340 (340)
T ss_dssp ETTSCEEEEC
T ss_pred cCCccEEecC
Confidence 9999999996
No 14
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.7e-42 Score=261.78 Aligned_cols=238 Identities=18% Similarity=0.203 Sum_probs=191.1
Q ss_pred ecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc--eeeeeecCCcceEEEEECc--CCcEEEEEccCCeE
Q psy16005 8 IFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKV 82 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i 82 (248)
++..+..+|.+.|.+++|+|+|++|++++ |+.|++||+.+++ ....+.+|.+.|.+++|+| ++++|++|+.|++|
T Consensus 4 ~~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 4 VINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp ----------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred eeeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 34455567999999999999999999987 9999999998765 4567889999999999986 48999999999999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC-------------CCCceeEeCCC--
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID-------------YEPSSISLDHE-- 144 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~-------------~~~~~~~~~~~-- 144 (248)
++||+++++......+.+|...|.+++|+|+ +.+|++++.++ +++|++... ..+.++.|+|+
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 9999998754444567789999999999998 78999998777 599987643 23567888887
Q ss_pred ---------------CCEEEEEcCCCeEEEEECC-----ceeeeec-ccCCCceEEEcCCC----CEEEEEcCCCcEEEE
Q psy16005 145 ---------------HGLVAVGGADSKISIVENG-----AKVSSLP-IDYEPSSISLDHEH----GLVAVGGADSKVHIY 199 (248)
Q Consensus 145 ---------------~~~~~~~~~~~~i~~~~~~-----~~~~~~~-~~~~~~~~~~s~~~----~~l~~~~~d~~v~i~ 199 (248)
++++++++.|+.|++||.. +....+. +...+.+++|+|++ .+|++++.|+.|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 4689999999999999932 2333443 45668999999987 799999999999999
Q ss_pred EcCCCC---CCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 200 ELNNKS---LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 200 d~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
|+++.. ........|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 998632 2222334688999999999999999999999999999975
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.8e-41 Score=258.98 Aligned_cols=233 Identities=16% Similarity=0.190 Sum_probs=196.5
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|...|.+++|+|++.++++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+.....
T Consensus 73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~ 152 (343)
T 2xzm_R 73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152 (343)
T ss_dssp CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce
Confidence 45888999999999999999987 99999999999999999999999999999999999999999999999999985433
Q ss_pred eeeeeccCCCCCeeEEEEecCC----------CEEEEEeCCc-EEEEEcc---------CCCCCceeEeCCCCCEEEEEc
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDN----------QRMISIVENG-AKVSSLP---------IDYEPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~~~-~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~ 152 (248)
........|...+.+++|+|++ .++++++.++ +++|+.. +...+.+++|+|++++|++++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 2222334788999999999987 6899998777 4999853 345678999999999999999
Q ss_pred CCCeEEEEEC---CceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC--ccc----------ccCCcC
Q psy16005 153 ADSKISIVEN---GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP--KAE----------LDHLGP 217 (248)
Q Consensus 153 ~~~~i~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~----------~~~~~~ 217 (248)
.|+.|++||. ......+.....+.+++|+|++.+++++ .|+.|++||+.+++... .+. .+|...
T Consensus 233 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (343)
T 2xzm_R 233 KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ 311 (343)
T ss_dssp TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC
T ss_pred CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc
Confidence 9999999994 2334444456678999999999888765 47789999998876543 111 157788
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 218 VTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
|.+++|+|+|++|++|+.||.|++|+++++
T Consensus 312 v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 312 CTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 999999999999999999999999999765
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.2e-41 Score=259.62 Aligned_cols=227 Identities=13% Similarity=0.199 Sum_probs=193.3
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee----------------------------------------
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD---------------------------------------- 52 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~---------------------------------------- 52 (248)
.+|.+.|.+++|+|++++|++++ |+.|++||..+++...
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence 35899999999999999999997 9999999986654322
Q ss_pred --------eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec--CCCEEEEEeC
Q psy16005 53 --------IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMISIVE 122 (248)
Q Consensus 53 --------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~ 122 (248)
.+..|...|.+++|+|+++.|++++.|++|++||+++++.+ ..+.+|...|.+++|+| ++++|++++.
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL--QSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 23357788899999999999999999999999999998854 56778999999999987 5689999997
Q ss_pred Cc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEEC--Cceeeeecc---cCCCceEEEcCCCCE
Q psy16005 123 NG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVEN--GAKVSSLPI---DYEPSSISLDHEHGL 186 (248)
Q Consensus 123 ~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~---~~~~~~~~~s~~~~~ 186 (248)
++ +++|+++. ...+.+++|+|+++++++++.|+.|++||. ++.+..+.. ...+.+++|+|++++
T Consensus 219 Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298 (354)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE
Confidence 77 59999753 345788999999999999999999999994 334444432 235688999999999
Q ss_pred EEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 187 VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
|++|+.|+.|++||+.+++.+..+. +|.+.|++++|+|+|++|++++.|++|++|+
T Consensus 299 l~~g~~d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 299 LFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999888765444 7999999999999999999999999999996
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-41 Score=259.10 Aligned_cols=240 Identities=14% Similarity=0.204 Sum_probs=198.4
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee---eeecCCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD---IYTEHSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
.++..++.+..+.+.+++|+|+|++|++++ |+.|++||+.++.... ...+|...|.+++|+|++++|++|+.|+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 455667654444999999999999999987 9999999998876432 235899999999999999999999999999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-------------CCCCceeEeCCCCCEE
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-------------DYEPSSISLDHEHGLV 148 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-------------~~~~~~~~~~~~~~~~ 148 (248)
++||+..+.......+.+|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 999998876545567889999999999999999999999877 59999853 2346788999999999
Q ss_pred EEEcCCCeEEEEEC--Cc--eeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC---------------
Q psy16005 149 AVGGADSKISIVEN--GA--KVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP--------------- 208 (248)
Q Consensus 149 ~~~~~~~~i~~~~~--~~--~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~--------------- 208 (248)
++++.|+.|++|+. ++ ....+. +...+.+++|+|++++|++++.|+.|++||........
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence 99999999999993 32 223333 56678999999999999999999999999975432211
Q ss_pred cccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 209 KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 209 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.....|...|.+++|+|++..|++++.|+.|++|+...
T Consensus 246 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 11112788999999999999999999999999999864
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-41 Score=263.71 Aligned_cols=232 Identities=15% Similarity=0.273 Sum_probs=195.1
Q ss_pred cccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCc------------------ceEEEEECcCCcEEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC------------------AVNVAKYSPSGFYIASG 76 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~------------------~v~~~~~s~~~~~l~~~ 76 (248)
.|.+.|.+++|+|||++|++++++.+++|++.+++....+..|.. .|.+++|+|++++|++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 488999999999999999999999999999999988777755432 48999999999999999
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCC-CC
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDH-EH 145 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~-~~ 145 (248)
+.|+.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.++ +++|++.. ...+..++++| ++
T Consensus 142 ~~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 142 AEDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 219 (393)
T ss_dssp ETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred cCCCeEEEEECCCCcEE--EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC
Confidence 99999999999988744 56788999999999999999999999887 59999753 34567888998 89
Q ss_pred CEEEEEcCCCeEEEEE--CCceeeee--------cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC--------
Q psy16005 146 GLVAVGGADSKISIVE--NGAKVSSL--------PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS-------- 207 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~--~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~-------- 207 (248)
+++++++.|+.|++|| .+..+..+ .+...+.+++|+|++++|++|+.|+.|++||+++....
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 9999999999999999 44444444 24566899999999999999999999999999864321
Q ss_pred ---CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 208 ---PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 208 ---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.....+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 300 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp -CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence 11223688999999999999999999999999999998764
No 19
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-41 Score=256.43 Aligned_cols=231 Identities=13% Similarity=0.160 Sum_probs=198.9
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|...|.+++|+|+|++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||++...
T Consensus 62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~- 140 (319)
T 3frx_A 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC- 140 (319)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE-
T ss_pred eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-
Confidence 35889999999999999999987 9999999999999999999999999999999999999999999999999997542
Q ss_pred eeeeeccCCCCCeeEEEEecC------CCEEEEEeCCc-EEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCC
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPD------NQRMISIVENG-AKVSSLP----------IDYEPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~~~-~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
...+.+|...+.++.|.|. +..+++++.++ +++|++. +...+.+++++|+++++++++.|+
T Consensus 141 --~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 218 (319)
T 3frx_A 141 --LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218 (319)
T ss_dssp --EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred --EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 2566789999999999985 44788888776 5999975 345678999999999999999999
Q ss_pred eEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc-------cccCCcCeEEEEEcCC
Q psy16005 156 KISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA-------ELDHLGPVTDCSFSPS 226 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------~~~~~~~v~~~~~s~~ 226 (248)
.|++|| .++.+..+.....+.+++|+|++.++++++.+ .+++|++......... ...|...+.+++|+||
T Consensus 219 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 297 (319)
T 3frx_A 219 EIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTT
T ss_pred eEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCC
Confidence 999999 55667777777889999999999999988865 4999999875432221 1235678999999999
Q ss_pred CcEEEEEcCCCeEEEEECCCCC
Q psy16005 227 NEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 227 ~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
|++|++++.||.|++||+.+++
T Consensus 298 g~~l~sg~~Dg~i~vWd~~t~~ 319 (319)
T 3frx_A 298 GQTLFAGYTDNVIRVWQVMTAN 319 (319)
T ss_dssp SSEEEEEETTSCEEEEEEEEC-
T ss_pred CCEEEEeecCceEEEEEEeecC
Confidence 9999999999999999998753
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-41 Score=258.54 Aligned_cols=237 Identities=14% Similarity=0.215 Sum_probs=196.8
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
+..+|.+.|.+++|+|+|++|++++ |+.+++|++.++. ....+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 3356889999999999999999987 9999999988764 466788999999999999999999999999999999998
Q ss_pred CCcee-eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC------------CCCCceeEeCCCCCEEEEEcCC
Q psy16005 89 NKEHI-LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI------------DYEPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 89 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 154 (248)
++... ....+..|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|+|++++|++++.|
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 76432 3356778999999999999999999999877 58998642 3457889999999999999999
Q ss_pred CeEEEEEC--Cc---------------eeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC-------
Q psy16005 155 SKISIVEN--GA---------------KVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP------- 208 (248)
Q Consensus 155 ~~i~~~~~--~~---------------~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~------- 208 (248)
+.|++|+. .. .+..+. +...+.+++|+|++..|++++.|+.|++|+........
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 99999982 11 111222 45568899999999999999999999999997654221
Q ss_pred -cccccCCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCCCC
Q psy16005 209 -KAELDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 209 -~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~~ 248 (248)
....+|...|++++|+|++. +|++++.||.|++|++.+++
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 11236899999999999984 99999999999999998754
No 21
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=260.52 Aligned_cols=234 Identities=14% Similarity=0.120 Sum_probs=188.1
Q ss_pred cccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCC-----------CceeeeeecCCcceEEEEECcCCcEEEEEccCCe
Q psy16005 13 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----------PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK 81 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 81 (248)
+..+.+.|.+++|+|||++|++++++++++||... .........+...|.+++|+|++ .|++|+.||+
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred cccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 34567789999999999999998887777776321 11112223466789999999985 6889999999
Q ss_pred EEEEECCCCceeee--eeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCC-E
Q psy16005 82 VRIWDTVNKEHILK--NEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHG-L 147 (248)
Q Consensus 82 i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~-~ 147 (248)
|++||+++++.... ....+|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|++++. +
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 99999998875432 34568999999999999999999999887 69999753 45678899999874 7
Q ss_pred EEEEcCCCeEEEEE--CCceeeeec---ccCCCceEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEE
Q psy16005 148 VAVGGADSKISIVE--NGAKVSSLP---IDYEPSSISLDHE-HGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDC 221 (248)
Q Consensus 148 ~~~~~~~~~i~~~~--~~~~~~~~~---~~~~~~~~~~s~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~ 221 (248)
+++++.|+.|++|| .++....+. ....+.+++|+|+ +++|++|+.||.|++||+++++.+..+. +|...|+++
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v 263 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGL 263 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCSSCEEEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCCCCEEEE
Confidence 89999999999999 455555553 2345789999995 5688999999999999999998876655 799999999
Q ss_pred EEcCCC-cEEEEEcCCCeEEEEECCCCC
Q psy16005 222 SFSPSN-EYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 222 ~~s~~~-~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|+|++ ++|++++.|++|+|||+++++
T Consensus 264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCSLAVLDSSLSE 291 (344)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence 999998 579999999999999998764
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-40 Score=253.90 Aligned_cols=230 Identities=15% Similarity=0.218 Sum_probs=192.4
Q ss_pred ccccCCcEEEEe-----CC-CCCEEEEeC-CcEEEEEecCCC-------ceeeeeecCCcceEEEEECcCCcEEEEEccC
Q psy16005 14 RTQRGQPIVLGG-----DP-KGKNFLYTN-GNSVIIRNIENP-------AISDIYTEHSCAVNVAKYSPSGFYIASGDIS 79 (248)
Q Consensus 14 ~~~~~~v~~~~~-----s~-~~~~l~~~~-~~~v~v~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 79 (248)
.+|.+.|.+++| ++ ++++|++++ |+.|++||+.+. .....+.+|...|.+++|+|++.++++++.|
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D 97 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence 468999999999 77 899999987 999999998753 3456678999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc------------CCCCCceeEeCCCC-
Q psy16005 80 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP------------IDYEPSSISLDHEH- 145 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~------------~~~~~~~~~~~~~~- 145 (248)
++|++||+++++.+ ..+.+|...|.+++|+|++++|++++.++ +++|++. ....+.++.++|++
T Consensus 98 ~~v~lwd~~~~~~~--~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 98 KTLRLWDLRTGTTY--KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175 (343)
T ss_dssp SEEEEEETTSSCEE--EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCC
T ss_pred CcEEEEECCCCcEE--EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccc
Confidence 99999999998854 56778999999999999999999999776 6999974 23346788898886
Q ss_pred ---------CEEEEEcCCCeEEEEEC-Cceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC
Q psy16005 146 ---------GLVAVGGADSKISIVEN-GAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH 214 (248)
Q Consensus 146 ---------~~~~~~~~~~~i~~~~~-~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 214 (248)
.++++++.|+.|++||. .+....+ .+...+.+++|+|+|++|++|+.|+.|++||+.+........ .+
T Consensus 176 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~ 254 (343)
T 2xzm_R 176 SANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DA 254 (343)
T ss_dssp SCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-EC
T ss_pred cccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cC
Confidence 78999999999999993 3333333 356678999999999999999999999999996544333322 35
Q ss_pred CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 215 LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
...|.+++|+|++++++++ .|+.|++|++.++
T Consensus 255 ~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 5679999999999877655 5888999998764
No 23
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6e-40 Score=248.42 Aligned_cols=232 Identities=10% Similarity=0.152 Sum_probs=198.3
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.+++|+|++++|++++ |+.|++|++.+++....+.+|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 99 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence 46889999999999999999987 99999999999999999999999999999999999999999999999999998885
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
+ ..+.+|...|.+++|+|++++|++++.++ +++|+++. ...+.++.++|+++++++++.|+.|++||
T Consensus 100 ~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 177 (312)
T 4ery_A 100 L--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177 (312)
T ss_dssp E--EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred E--EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 4 56778999999999999999999999776 69999863 34567899999999999999999999999
Q ss_pred --CCceeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCe---EEEEEcCCCcEEEEEc
Q psy16005 162 --NGAKVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPV---TDCSFSPSNEYLVASD 234 (248)
Q Consensus 162 --~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v---~~~~~s~~~~~l~~~~ 234 (248)
.++.+..+. ....+..++|+|++++|++++.|+.|++||+++++....+. +|...+ ......+++++|++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~ 256 (312)
T 4ery_A 178 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGS 256 (312)
T ss_dssp TTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECC
T ss_pred CCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEEC
Confidence 344444443 34457889999999999999999999999999887655443 454332 2333346788999999
Q ss_pred CCCeEEEEECCCCC
Q psy16005 235 AHRKVVLYRVPDFE 248 (248)
Q Consensus 235 ~d~~i~vw~~~~~~ 248 (248)
.||.|++||+.+++
T Consensus 257 ~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 257 EDNLVYIWNLQTKE 270 (312)
T ss_dssp TTSCEEEEETTTCC
T ss_pred CCCEEEEEECCCch
Confidence 99999999998764
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-40 Score=251.62 Aligned_cols=232 Identities=17% Similarity=0.186 Sum_probs=181.9
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC-------CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN-------PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
.|.+.|.+++|+|++++|++++ |+.|++|++.. .+....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3889999999999999999987 99999999853 345667789999999999999999999999999999999
Q ss_pred CCCC-c-eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC------------CCCCceeEeCCC--CCEEE
Q psy16005 87 TVNK-E-HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI------------DYEPSSISLDHE--HGLVA 149 (248)
Q Consensus 87 ~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~------------~~~~~~~~~~~~--~~~~~ 149 (248)
++.. + ......+.+|...|.+++|+|++++|++++.|+ +++|+... ...+.+++|+|+ +..++
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 9543 2 123356778999999999999999999999776 59998642 345678899998 67899
Q ss_pred EEcCCCeEEEEECC----------ceeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC--CCcccccCC
Q psy16005 150 VGGADSKISIVENG----------AKVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL--SPKAELDHL 215 (248)
Q Consensus 150 ~~~~~~~i~~~~~~----------~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~ 215 (248)
+++.|+.|++|+.. .....+. +...+.+++|++++ +|++++.||.|++||..+++. ......+|.
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~ 294 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG 294 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence 99999999999832 1222332 55678999999765 789999999999999987642 222223577
Q ss_pred c-CeEEEEEcC--CCcEEEEEcCCCeEEEEECCCC
Q psy16005 216 G-PVTDCSFSP--SNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 216 ~-~v~~~~~s~--~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
. .|.+++|+| ++++|++++.||.|++|++++.
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence 6 899999999 7899999999999999998753
No 25
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.5e-40 Score=249.74 Aligned_cols=237 Identities=16% Similarity=0.233 Sum_probs=182.5
Q ss_pred ccccccccCCcEEEEeCCC-CCEEEEeC-CcEEEEEecCCCc-----eeeeeecCCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 10 ATLPRTQRGQPIVLGGDPK-GKNFLYTN-GNSVIIRNIENPA-----ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 10 ~~~~~~~~~~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
..+ .+|.+.|++++|+|+ +++|++|+ |+.|++||+.+.+ +...+.+|...|.+++|+|++++|++++.|+.|
T Consensus 32 ~tL-~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 32 GTL-KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp EEE-CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEE-CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 345 469999999999998 57899887 9999999987654 355678999999999999999999999999999
Q ss_pred EEEECCCCceeee-----------------------------------------eeccCCCCCeeEEEEecCC--CEEEE
Q psy16005 83 RIWDTVNKEHILK-----------------------------------------NEFHPIGGPIKDIAWSPDN--QRMIS 119 (248)
Q Consensus 83 ~iwd~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~--~~l~~ 119 (248)
++|+......... ....+|...+..++|++++ ..+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 190 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence 9999876542210 1123455666677776653 34555
Q ss_pred EeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCE
Q psy16005 120 IVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGL 186 (248)
Q Consensus 120 ~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~ 186 (248)
++.++ +++|++.. ...+.+++|+|+++++++++.|+.|++|| ..+.+..+.....+.+++++|++.+
T Consensus 191 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 270 (340)
T 4aow_A 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 270 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSE
T ss_pred EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCce
Confidence 55544 47777642 34567889999999999999999999999 5566667777778889999998765
Q ss_pred EEEEcCCCcEEEEEcCCCCCCCc--------ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 187 VAVGGADSKVHIYELNNKSLSPK--------AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+ +++.|+.|++||++++..... ....|...|++++|+||+++|++++.||.|+|||+++|+
T Consensus 271 ~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 271 L-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp E-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred e-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 5 455689999999887643222 223588899999999999999999999999999999985
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.7e-41 Score=257.76 Aligned_cols=235 Identities=17% Similarity=0.178 Sum_probs=184.1
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-------CcEEEEEecCCCcee----eeeecCCcceEEEEECcCCcEEEEEccCC
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-------GNSVIIRNIENPAIS----DIYTEHSCAVNVAKYSPSGFYIASGDISG 80 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~v~v~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 80 (248)
.|..|.+.|.+++|||||++|++++ |+.+++|+..++... .....|...|.+++|+|+++ +++++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 3456889999999999999999986 578999998776543 23447888999999999986 45677899
Q ss_pred eEEEEECCCCceeee--eeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCC-
Q psy16005 81 KVRIWDTVNKEHILK--NEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHG- 146 (248)
Q Consensus 81 ~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~- 146 (248)
+|++||+.+++.... ....+|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|++++.
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 999999988765432 34457899999999999999999999877 69999753 34577899999875
Q ss_pred EEEEEcCCCeEEEEE--CCceeeeec---ccCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEE
Q psy16005 147 LVAVGGADSKISIVE--NGAKVSSLP---IDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTD 220 (248)
Q Consensus 147 ~~~~~~~~~~i~~~~--~~~~~~~~~---~~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~ 220 (248)
++++++.|+.|++|| .++....+. ....+.+++|+|++ .+|++|+.|+.|++||+++++....+. +|...|++
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~ 274 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHSQNITG 274 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-CCSSCEEE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-ccceeEEE
Confidence 788999999999999 344444333 34557899999975 689999999999999999988765554 78999999
Q ss_pred EEEcCCC-cEEEEEcCCCeEEEEECCCCC
Q psy16005 221 CSFSPSN-EYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 221 ~~~s~~~-~~l~~~~~d~~i~vw~~~~~~ 248 (248)
++|+|++ ++|++++.|++|+|||+++++
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 9999997 578999999999999998764
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.5e-40 Score=254.85 Aligned_cols=225 Identities=17% Similarity=0.188 Sum_probs=193.8
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
.|.+++|+|+|++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+++++... .
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~--~ 202 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL--T 202 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--E
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE--E
Confidence 489999999999999987 9999999999999999999999999999999999999999999999999999887543 2
Q ss_pred ccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEccC-----------------CCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 98 FHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLPI-----------------DYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 98 ~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
+. +...+.+++|+| ++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+.|+
T Consensus 203 ~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 203 LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 32 457899999999 899999999777 59999642 23567899999999999999999999
Q ss_pred EEECCc--------------eeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 159 IVENGA--------------KVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 159 ~~~~~~--------------~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
+||... ....+ .+...+.+++++|++.+|++|+.|+.|++||+++++....+. +|...|.+++|
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-~h~~~v~~v~~ 360 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAV 360 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-CCCCCEEEEEe
Confidence 999322 11222 345568899999999999999999999999999988765544 79999999999
Q ss_pred cC------CCcEEEEEcCCCeEEEEECCCC
Q psy16005 224 SP------SNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 224 s~------~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+| ++++|++++.||+|++|+++..
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 86 6889999999999999998653
No 28
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.9e-40 Score=248.26 Aligned_cols=231 Identities=16% Similarity=0.215 Sum_probs=194.6
Q ss_pred ccccccccCCcEEEEeCCCC-CEEEEeC-CcEEEEEecCC-----CceeeeeecCCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 10 ATLPRTQRGQPIVLGGDPKG-KNFLYTN-GNSVIIRNIEN-----PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 10 ~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
..+ .+|.+.|.+++|+|++ ++|++++ |+.|++|++.. +.....+.+|...|.+++|+|++++|++|+.|++|
T Consensus 11 ~~l-~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 11 GTL-EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEE-ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 344 4699999999999965 7888887 99999999864 23456788999999999999999999999999999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCCC------CC
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDHE------HG 146 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~~------~~ 146 (248)
++||+.+++.. ..+.+|...|.+++|+|++++|++++.|+ +++|+++. ...+..+.+.|. +.
T Consensus 90 ~~wd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 90 RLWDVATGETY--QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEEETTTTEEE--EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEEECCCCCee--EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999998854 56788999999999999999999999887 59999752 345667888874 45
Q ss_pred EEEEEcCCCeEEEEECC--ceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 147 LVAVGGADSKISIVENG--AKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 147 ~~~~~~~~~~i~~~~~~--~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
.+++++.|+.|++||.. +....+ .+...+.+++|+|++++|++|+.|+.|++||+.+++....+. +...|.+++|
T Consensus 168 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~ 245 (319)
T 3frx_A 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVFSLAF 245 (319)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEEEEEE
T ss_pred EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEE
Confidence 89999999999999943 334444 356778999999999999999999999999999988755443 4568999999
Q ss_pred cCCCcEEEEEcCCCeEEEEECCC
Q psy16005 224 SPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 224 s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
+|++.+|++++. +.+++|+++.
T Consensus 246 sp~~~~la~~~~-~~i~v~~~~~ 267 (319)
T 3frx_A 246 SPNRYWLAAATA-TGIKVFSLDP 267 (319)
T ss_dssp CSSSSEEEEEET-TEEEEEEETT
T ss_pred cCCCCEEEEEcC-CCcEEEEeCc
Confidence 999999988875 4699999764
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-39 Score=245.27 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=195.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|..+|.+++|+|++++|++++ |+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||+|++||++++...
T Consensus 53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 132 (304)
T 2ynn_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132 (304)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch
Confidence 4778899999999999999987 999999999999999999999999999999999999999999999999999877543
Q ss_pred eeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCC--CCCEEEEEcCCCeEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLPID-----------YEPSSISLDH--EHGLVAVGGADSKIS 158 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~~i~ 158 (248)
...+.+|...|.+++|+| ++..|++++.|+ +++|++... ..+..+.+.| ++.++++++.|+.|+
T Consensus 133 -~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 133 -EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp -EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred -hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 356788999999999999 678999999887 599998532 2345566665 778999999999999
Q ss_pred EEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc--EEEEE
Q psy16005 159 IVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE--YLVAS 233 (248)
Q Consensus 159 ~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~ 233 (248)
+|| .++.+..+. +...+.+++|+|++.+|++|+.||.|++||+++++....+. .|...+.+++|+|++. +++++
T Consensus 212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CSSSSEEEEEECTTCGGGCEEEE
T ss_pred EEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-CCCccEEEEEECCCCCceEEEEe
Confidence 999 555666665 55678999999999999999999999999999988766554 6788999999999885 46666
Q ss_pred cCCCeEEEEECCCC
Q psy16005 234 DAHRKVVLYRVPDF 247 (248)
Q Consensus 234 ~~d~~i~vw~~~~~ 247 (248)
+ ++.+.+|++.+.
T Consensus 291 ~-~~g~~~~~~~~~ 303 (304)
T 2ynn_A 291 F-DNGFTVLSLGND 303 (304)
T ss_dssp E-TTEEEEEECC--
T ss_pred c-CCceEEEEeccC
Confidence 5 556888887654
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.6e-39 Score=245.47 Aligned_cols=232 Identities=17% Similarity=0.206 Sum_probs=203.1
Q ss_pred cccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeee---ee--cCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI---YT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~---~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|.+.|.+++|+|+++++++++++.|++|++.+++.... +. .|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 588999999999999999999999999999987654332 22 7889999999999999999999999999999998
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
++......+..|...+.+++|+|+++++++++.++ +.+|++.. ...+.+++++|+++.+++++.|+.|+
T Consensus 129 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEE
Confidence 87555567778899999999999999999998766 69999753 35577899999999999999999999
Q ss_pred EEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 159 IVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 159 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
+|| .++.+..+.+...+.+++|+|+++++++++.++.|++||+++++.. ....|...|.+++|+|++++|++++.|
T Consensus 209 ~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d 286 (337)
T 1gxr_A 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKD 286 (337)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE--EEcCCccceeEEEECCCCCEEEEecCC
Confidence 999 5666677777888999999999999999999999999999987753 233689999999999999999999999
Q ss_pred CeEEEEECCCCC
Q psy16005 237 RKVVLYRVPDFE 248 (248)
Q Consensus 237 ~~i~vw~~~~~~ 248 (248)
|.|++||+++++
T Consensus 287 g~i~~~~~~~~~ 298 (337)
T 1gxr_A 287 NLLNAWRTPYGA 298 (337)
T ss_dssp SEEEEEETTTCC
T ss_pred CcEEEEECCCCe
Confidence 999999998764
No 31
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.4e-39 Score=242.13 Aligned_cols=229 Identities=14% Similarity=0.242 Sum_probs=196.8
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
..|...|.+++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence 35788999999999999999987 99999999999999999999999999999999999999999999999999998875
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID-----------YEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
+ ..+..|..+|.+++|+|++++|++++.++ +++|++... ..+..++++|+++++++++.|+.|++|
T Consensus 142 ~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 219 (312)
T 4ery_A 142 L--KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219 (312)
T ss_dssp E--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred E--EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 4 56778899999999999999999999777 599998532 345678999999999999999999999
Q ss_pred E--CCceeeeecccC-CC--ceEEE-cCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 161 E--NGAKVSSLPIDY-EP--SSISL-DHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 161 ~--~~~~~~~~~~~~-~~--~~~~~-s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
| .++.+..+..+. .. ....+ .+++.+|++|+.||.|++||+++++....+. +|...|.+++|+|+++++++++
T Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECSSSSEEEEEE
T ss_pred ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-ccCCcEEEEeecCcCCceEEEE
Confidence 9 455555554322 22 22233 4678899999999999999999988765554 7999999999999999999986
Q ss_pred --CCCeEEEEECC
Q psy16005 235 --AHRKVVLYRVP 245 (248)
Q Consensus 235 --~d~~i~vw~~~ 245 (248)
.|+.|++|+.+
T Consensus 299 ~~~d~~i~~W~~d 311 (312)
T 4ery_A 299 LENDKTIKLWKSD 311 (312)
T ss_dssp CTTTCCEEEEECC
T ss_pred ccCCccEEEecCC
Confidence 69999999975
No 32
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.2e-39 Score=247.93 Aligned_cols=238 Identities=16% Similarity=0.228 Sum_probs=197.4
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC----ceeeeeecCCcceEEEEECc--CCcEEEEEccCCeEE
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP----AISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVR 83 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~ 83 (248)
.+..+|.+.|.+++|+|++++|++++ |+.|++||+.++ +....+.+|...|.+++|+| ++++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 34467999999999999999999987 999999999876 35666779999999999999 699999999999999
Q ss_pred EEECCCCce-------eeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC--------------------
Q psy16005 84 IWDTVNKEH-------ILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID-------------------- 133 (248)
Q Consensus 84 iwd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~-------------------- 133 (248)
+||+++++. .....+..|...|.+++|+|+ ++++++++.++ +++|++...
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 999987642 223566789999999999999 99999999877 599997532
Q ss_pred ---CCCceeEeCCC---CCEEEEEcCCCeEEEEEC--Cce--eeeec-ccCCCceEEEcCCC----CEEEEEcCCCcEEE
Q psy16005 134 ---YEPSSISLDHE---HGLVAVGGADSKISIVEN--GAK--VSSLP-IDYEPSSISLDHEH----GLVAVGGADSKVHI 198 (248)
Q Consensus 134 ---~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~--~~~--~~~~~-~~~~~~~~~~s~~~----~~l~~~~~d~~v~i 198 (248)
..+.++.++|+ +..+++++.++.+.+|+. ++. ...+. +...+.+++|+|++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 34567888887 899999999999977772 222 33333 56678999999998 89999999999999
Q ss_pred EEcCCCCC---------------------------------------------CCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 199 YELNNKSL---------------------------------------------SPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 199 ~d~~~~~~---------------------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
||++++.. ......+|...|++++|+|++++|+++
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 99987521 111123588999999999999999999
Q ss_pred cCCCeEEEEECCCCC
Q psy16005 234 DAHRKVVLYRVPDFE 248 (248)
Q Consensus 234 ~~d~~i~vw~~~~~~ 248 (248)
+.||.|++|++.+++
T Consensus 325 ~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 325 GDDGKVRLWKATYSN 339 (351)
T ss_dssp ETTSCEEEEEECTTS
T ss_pred cCCCcEEEEecCcCc
Confidence 999999999998763
No 33
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.9e-40 Score=253.50 Aligned_cols=184 Identities=17% Similarity=0.249 Sum_probs=153.4
Q ss_pred ceEEEEECcCCcEEEE--EccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC-----
Q psy16005 60 AVNVAKYSPSGFYIAS--GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI----- 132 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~----- 132 (248)
.+.+++|||||+++++ ++.|++|+|||+++++.+ ..+ .|...|.+++|+|||+++++++++++.+|+...
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~--~~~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK--FEI-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA 211 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE--EEE-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE--EEe-CCCCceEEEEEccCCceEEeccceeEEEEEeccCccee
Confidence 3678999999998765 457899999999998865 334 367889999999999999999999998887542
Q ss_pred -------CCCCceeEeCCCCCEEEEEcCCC----eEEEEEC--Cce----eeee-cccCCCceEEEcCCCCEEEEEcCCC
Q psy16005 133 -------DYEPSSISLDHEHGLVAVGGADS----KISIVEN--GAK----VSSL-PIDYEPSSISLDHEHGLVAVGGADS 194 (248)
Q Consensus 133 -------~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~--~~~----~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~ 194 (248)
...+.+++|+|+++.+++++.++ .++.|+. ... ...+ .+...+.+++|+|||++||+|+.|+
T Consensus 212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~ 291 (365)
T 4h5i_A 212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN 291 (365)
T ss_dssp EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS
T ss_pred eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC
Confidence 23467889999999999998776 5777872 221 1122 3456789999999999999999999
Q ss_pred cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 195 KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.|+|||+++++.+..+..+|...|++++|+|||++|++++.|++|+||+++.
T Consensus 292 ~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 292 SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999887766668999999999999999999999999999999964
No 34
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-39 Score=265.03 Aligned_cols=223 Identities=18% Similarity=0.304 Sum_probs=195.8
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...+.+++|+|+|+++++++ ++.+++|+. +++....+..|...|.+++|+|++++|++++.|+.|++||.. ++.+
T Consensus 342 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~ 419 (577)
T 2ymu_A 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL 419 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEE
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEE
Confidence 4778899999999999999986 899999995 567788888999999999999999999999999999999964 4432
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc---------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE-C
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP---------IDYEPSSISLDHEHGLVAVGGADSKISIVE-N 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~ 162 (248)
..+.+|...|.+++|+||+++|++++.++ +++|+.. ....+.+++|+|+++++++++.|+.|++|+ .
T Consensus 420 --~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~ 497 (577)
T 2ymu_A 420 --QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497 (577)
T ss_dssp --EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred --EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC
Confidence 56678999999999999999999999887 5899864 345678899999999999999999999999 6
Q ss_pred Cceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 163 GAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 163 ~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
++.+..+. +...+++++|+|++++|++++.|+.|++||. +++.+..+ .+|.+.|++++|+|||++|++++.|++|++
T Consensus 498 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~-~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 498 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 66666665 5667899999999999999999999999996 45554444 389999999999999999999999999999
Q ss_pred EE
Q psy16005 242 YR 243 (248)
Q Consensus 242 w~ 243 (248)
||
T Consensus 576 Wd 577 (577)
T 2ymu_A 576 WN 577 (577)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 35
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-39 Score=251.31 Aligned_cols=230 Identities=13% Similarity=0.111 Sum_probs=203.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.|.++|.+++|+|++++|++++ ++.|++||+.+++ ....+.+|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 4778999999999999999995 9999999999887 778888999999999999999999999999999999998887
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------------CCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI--------------DYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
......+..|...+.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+.
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence 655566678899999999999999999999776 68998753 334678999999999999999999
Q ss_pred EEEEEC--------------------Cceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCC
Q psy16005 157 ISIVEN--------------------GAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 215 (248)
Q Consensus 157 i~~~~~--------------------~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 215 (248)
+++||. ++.+..+. +...+.+++|+|++++|++++.|+.|++||+++++....+. .|.
T Consensus 166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~ 244 (372)
T 1k8k_C 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-SET 244 (372)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-CSS
T ss_pred EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc-cCC
Confidence 999993 45555553 45678999999999999999999999999999988765554 688
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..|.+++|+|++++|+++ .|+.|++|++.+
T Consensus 245 ~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 245 LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 899999999999988888 899999999876
No 36
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-39 Score=247.28 Aligned_cols=236 Identities=14% Similarity=0.174 Sum_probs=185.7
Q ss_pred ecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC--ceeeee-ec-CCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 8 IFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP--AISDIY-TE-HSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~--~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
.+..+. +|.+.|.+++|+|+ +|++++ |+.|++|++.++ +....+ .. |...|.+++|+|++++|++|+.|++|
T Consensus 6 ~~~~~~-~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 6 LIKSLK-LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEE-CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cceeec-cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 344453 58899999999998 888876 999999999875 334444 34 99999999999999999999999999
Q ss_pred EEEECCCCc-----eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------------CCCCceeEeC
Q psy16005 83 RIWDTVNKE-----HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI--------------DYEPSSISLD 142 (248)
Q Consensus 83 ~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~--------------~~~~~~~~~~ 142 (248)
++||++... ......+.+|...|.+++|+|++++|++++.|+ +++|+++. ...+.+++|+
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 999986421 123356778999999999999999999999776 69999831 2346789999
Q ss_pred CCCCEEEEEcCCCeEEEEEC--C--ceeeeec-ccCCCceEEEcCC--CCEEEEEcCCCcEEEEEcCCCCC--------C
Q psy16005 143 HEHGLVAVGGADSKISIVEN--G--AKVSSLP-IDYEPSSISLDHE--HGLVAVGGADSKVHIYELNNKSL--------S 207 (248)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~--~--~~~~~~~-~~~~~~~~~~s~~--~~~l~~~~~d~~v~i~d~~~~~~--------~ 207 (248)
|++++|++++.|+.|++||. + +.+..+. +...+.+++|+|+ +..|++|+.|+.|++||++++.. .
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 99999999999999999983 3 3445554 5667899999998 67999999999999999976521 1
Q ss_pred CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 208 PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 208 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
..+...|...|.+++|++++ +|++++.||.|++|+..++
T Consensus 243 ~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 243 AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 12222388999999999765 7999999999999998654
No 37
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-39 Score=250.72 Aligned_cols=233 Identities=20% Similarity=0.202 Sum_probs=198.5
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecC--CCceeeeeecCCcceEEEEECcC--CcEEEEEccCCeEEEEECC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE--NPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~ 88 (248)
.+|.+.|.+++|+|++++|++++ |+.|++|++. +++....+.+|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 87 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 87 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence 46899999999999999999986 9999999998 55667788899999999999986 8999999999999999999
Q ss_pred CCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC------------CCCceeEeCC----------
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID------------YEPSSISLDH---------- 143 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~---------- 143 (248)
+++......+..|...|.+++|+|+ ++++++++.++ +++|++... ..+.+++|+|
T Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 167 (379)
T 3jrp_A 88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 167 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--------
T ss_pred CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccccc
Confidence 8875455677789999999999999 99999999887 599998643 3467889999
Q ss_pred ---CCCEEEEEcCCCeEEEEE--CCc----eeeeec-ccCCCceEEEcCC---CCEEEEEcCCCcEEEEEcCCCCCCC--
Q psy16005 144 ---EHGLVAVGGADSKISIVE--NGA----KVSSLP-IDYEPSSISLDHE---HGLVAVGGADSKVHIYELNNKSLSP-- 208 (248)
Q Consensus 144 ---~~~~~~~~~~~~~i~~~~--~~~----~~~~~~-~~~~~~~~~~s~~---~~~l~~~~~d~~v~i~d~~~~~~~~-- 208 (248)
++.++++++.|+.|++|| .+. ....+. +...+.+++|+|+ +.+|++++.||.|++||++++....
T Consensus 168 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 247 (379)
T 3jrp_A 168 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK 247 (379)
T ss_dssp --CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE
T ss_pred CCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcccee
Confidence 699999999999999999 232 223333 4667899999999 8999999999999999999874221
Q ss_pred --cccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 209 --KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 209 --~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.....|...|.+++|+|++++|++++.||.|++|++.+
T Consensus 248 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 248 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred eeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 11124788999999999999999999999999999863
No 38
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-40 Score=258.20 Aligned_cols=228 Identities=13% Similarity=0.129 Sum_probs=189.4
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC--ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc-
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP--AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE- 91 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~- 91 (248)
+.++|.+++|+|++++|++++ |+.|++||+.++ +....+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 557899999999999999996 999999999988 6778888999999999999999999999999999999999876
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------------CCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI--------------DYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
......+..|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+.
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 333456778999999999999999999999776 58988743 345678999999999999999999
Q ss_pred EEEEEC--------------------CceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC----CCcccc
Q psy16005 157 ISIVEN--------------------GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL----SPKAEL 212 (248)
Q Consensus 157 i~~~~~--------------------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~----~~~~~~ 212 (248)
|++||. ++.+..+.+...+.+++|+|++++|++++.|+.|++||+++++. ...+.
T Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~- 248 (377)
T 3dwl_C 170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK- 248 (377)
T ss_dssp EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE-
T ss_pred EEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec-
Confidence 999994 23344445666789999999999999999999999999999887 44443
Q ss_pred cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 213 DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 213 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+|...|.+++|+|++++|++++.++.+ +|+..
T Consensus 249 ~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 249 LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 789999999999999999999866666 66654
No 39
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-38 Score=245.35 Aligned_cols=229 Identities=11% Similarity=0.107 Sum_probs=193.5
Q ss_pred ccCCcEEEEeCCC----CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC
Q psy16005 16 QRGQPIVLGGDPK----GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 16 ~~~~v~~~~~s~~----~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 89 (248)
|.+.|.+++|+|+ +++|++++ |+.|++||+.+++....+.+|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 6688999999999 66888886 99999999999999999999999999999999 899999999999999999998
Q ss_pred Cceeeeee-ccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc------------------------------------
Q psy16005 90 KEHILKNE-FHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP------------------------------------ 131 (248)
Q Consensus 90 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~------------------------------------ 131 (248)
++...... +..|...|.+++|+|++++|++++.++ +++|+++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 87543221 267899999999999999999999776 6999985
Q ss_pred --CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc--e--------------eeeec-ccCCCceEEEcCC--CCEEEEE
Q psy16005 132 --IDYEPSSISLDHEHGLVAVGGADSKISIVENGA--K--------------VSSLP-IDYEPSSISLDHE--HGLVAVG 190 (248)
Q Consensus 132 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--------------~~~~~-~~~~~~~~~~s~~--~~~l~~~ 190 (248)
....+.+++|+ ++++++++.|+.|++||... . +..+. +...+.+++|+|+ +++|++|
T Consensus 228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 45567788887 77999999999999999322 1 23332 4556889999999 9999999
Q ss_pred cCCCcEEEEEcCCCCCCCc---ccccC--CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 191 GADSKVHIYELNNKSLSPK---AELDH--LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 191 ~~d~~v~i~d~~~~~~~~~---~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
+.||.|++||+.+++.... ....| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999999999998875431 22245 78999999999999999999999999999864
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.9e-38 Score=239.79 Aligned_cols=227 Identities=16% Similarity=0.166 Sum_probs=198.8
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.|...|.+++|+|+++++++++ ++.|++||+.+++ ....+..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 4778899999999999999886 8999999999877 556677899999999999999999999999999999999887
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
.. ..+..|...+.+++|+|+++++++++.++ +++|+++. ...+.+++++|+++.+++++.++.+++|+
T Consensus 175 ~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~ 252 (337)
T 1gxr_A 175 LV--RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252 (337)
T ss_dssp EE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ee--eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 54 56677899999999999999999999776 58999753 45678899999999999999999999999
Q ss_pred --CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 162 --NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 162 --~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
.++......+...+.+++|+|++++|++++.||.|++||+.+++... ...|...|.+++|+|++++|++++.||.|
T Consensus 253 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 253 VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QSKESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp TTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE--EecCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 33344444567778999999999999999999999999999988753 33588899999999999999999999999
Q ss_pred EEEECC
Q psy16005 240 VLYRVP 245 (248)
Q Consensus 240 ~vw~~~ 245 (248)
++|++.
T Consensus 331 ~iw~~~ 336 (337)
T 1gxr_A 331 TVYEVI 336 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999973
No 41
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.1e-39 Score=249.60 Aligned_cols=243 Identities=12% Similarity=0.116 Sum_probs=202.0
Q ss_pred CCcCcceecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc------eeeeeecCCcceEEEEECcC----
Q psy16005 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA------ISDIYTEHSCAVNVAKYSPS---- 69 (248)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~------~~~~~~~~~~~v~~~~~s~~---- 69 (248)
|+.........+ ..|.+.|.+++|+| ++|++++ |+.|++|++.+++ ....+..|...|.+++|+|+
T Consensus 1 m~~~~~~~~~~~-~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 1 MSKVFIATANAG-KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD 77 (397)
T ss_dssp --CEEEEEEEES-SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred Cchhhhhhhhhh-hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccC
Confidence 555444444444 46899999999999 6788776 9999999999887 67778899999999999999
Q ss_pred C---cEEEEEccCCeEEEEECCCCcee---eeeeccCC-----CCCeeEEEEe----cCCCE-EEEEeCCc-EEEEEccC
Q psy16005 70 G---FYIASGDISGKVRIWDTVNKEHI---LKNEFHPI-----GGPIKDIAWS----PDNQR-MISIVENG-AKVSSLPI 132 (248)
Q Consensus 70 ~---~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~~~-~~i~~~~~ 132 (248)
+ ++|++++.||.|++||+.+++.. ....+..| ...|.+++|+ |++++ |++++.++ +++|++..
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 9 99999999999999999887640 02455666 5899999999 99999 99998776 69999875
Q ss_pred ----------------------------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecc-------cCCC
Q psy16005 133 ----------------------------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPI-------DYEP 175 (248)
Q Consensus 133 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~-------~~~~ 175 (248)
...+.+++|+|++ ++++++.|+.|++|| .++.+..+.. ...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 2335678999999 999999999999999 4566666665 6778
Q ss_pred ceEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCCCccccc-------------CCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 176 SSISLDHEHGLVAVGGAD---SKVHIYELNNKSLSPKAELD-------------HLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 176 ~~~~~s~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
.+++|+|++++|++++.| +.|++||+++++.+..+. . |...|.+++|+|++++|++++.||.|
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 999999999999999999 999999999988765554 4 88999999999999999999999999
Q ss_pred EEEECCCCC
Q psy16005 240 VLYRVPDFE 248 (248)
Q Consensus 240 ~vw~~~~~~ 248 (248)
++||+++++
T Consensus 316 ~iwd~~~~~ 324 (397)
T 1sq9_A 316 RFWDVKTKE 324 (397)
T ss_dssp EEEETTTTE
T ss_pred EEEEcCCCc
Confidence 999998763
No 42
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-38 Score=259.03 Aligned_cols=226 Identities=18% Similarity=0.295 Sum_probs=193.9
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|++++|||||++|++++ |+.|+|||. +++.++.+.+|...|++++|+|++++|++++.|++|++||.. ++.
T Consensus 13 ~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~ 90 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQL 90 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCE
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCE
Confidence 36999999999999999999987 899999994 678888999999999999999999999999999999999964 443
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc----------------------------------------
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP---------------------------------------- 131 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~---------------------------------------- 131 (248)
+ ..+.+|...|.+++|+|++++|++++.++. ++|+..
T Consensus 91 ~--~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (577)
T 2ymu_A 91 L--QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168 (577)
T ss_dssp E--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred E--EEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceecccc
Confidence 3 567889999999999999999999998774 666631
Q ss_pred ----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEE
Q psy16005 132 ----------IDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIY 199 (248)
Q Consensus 132 ----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~ 199 (248)
....+..+.++|+++++++++.|+.+++|+ .++.+..+. +...+.+++|+|++++|++++.|+.|++|
T Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w 248 (577)
T 2ymu_A 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred ceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 113345678899999999999999999999 555555554 56678999999999999999999999999
Q ss_pred EcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 200 ELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 200 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
|... +.+.. ..+|...|.+++|+|+++.|++++.|+.|++|+..
T Consensus 249 ~~~~-~~~~~-~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~ 292 (577)
T 2ymu_A 249 NRNG-QLLQT-LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292 (577)
T ss_dssp CTTS-CEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eCCC-CEEEE-EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC
Confidence 9653 33333 33799999999999999999999999999999974
No 43
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-38 Score=241.16 Aligned_cols=230 Identities=14% Similarity=0.207 Sum_probs=202.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.+++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 45899999999999999999986 99999999999999999999999999999999999999999999999999999886
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCC------cEEEEEccCCC-----------------------CCceeEeCC
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVEN------GAKVSSLPIDY-----------------------EPSSISLDH 143 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------~~~i~~~~~~~-----------------------~~~~~~~~~ 143 (248)
.. .+. +...+.+++|+|+++++++++.+ .+.+|++.... .+.+++++|
T Consensus 109 ~~--~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 109 VA--TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp EE--EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred EE--Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 53 333 67899999999999999999876 46999986432 677889999
Q ss_pred CCCEEEEEcCCCeEEEEEC---Cceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 144 EHGLVAVGGADSKISIVEN---GAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~---~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
+++.+++++.++.|++||. .+....+. +...+.+++|+|++++|++++.|+.|++||+++++...... +...+.
T Consensus 186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~ 263 (369)
T 3zwl_B 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLN 263 (369)
T ss_dssp GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCce
Confidence 9999999999999999994 34555554 56678999999999999999999999999999988765543 778899
Q ss_pred EEEEcCCCcEEEEEcCCC--------------eEEEEECCCCC
Q psy16005 220 DCSFSPSNEYLVASDAHR--------------KVVLYRVPDFE 248 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~--------------~i~vw~~~~~~ 248 (248)
.++|+|+++++++++.++ .+++||+.+++
T Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 264 TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp EEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred eEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 999999999999999888 89999997764
No 44
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=251.99 Aligned_cols=232 Identities=11% Similarity=0.137 Sum_probs=189.3
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc-----------eeeeeecCC------------cceEEEEECcCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA-----------ISDIYTEHS------------CAVNVAKYSPSG 70 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~-----------~~~~~~~~~------------~~v~~~~~s~~~ 70 (248)
.+.+.|.+++|+|+|++|++|+ |+.|++|++.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999987 9999999998876 467788998 889999999998
Q ss_pred --cEEEEEccCCeEEEEECCCCceee--------------------------------------eeeccCCCCCeeEEEE
Q psy16005 71 --FYIASGDISGKVRIWDTVNKEHIL--------------------------------------KNEFHPIGGPIKDIAW 110 (248)
Q Consensus 71 --~~l~~~~~dg~i~iwd~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~ 110 (248)
..|++++.||.|++||+.+++... .....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 799999999999999987644210 0113579999999999
Q ss_pred ecCCCEEEEEeCCcEEEEEccC------------------CCCCceeEeCCCC-CEEEEEcCCCeEEEEE--CCce----
Q psy16005 111 SPDNQRMISIVENGAKVSSLPI------------------DYEPSSISLDHEH-GLVAVGGADSKISIVE--NGAK---- 165 (248)
Q Consensus 111 ~~~~~~l~~~~~~~~~i~~~~~------------------~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~--~~~~---- 165 (248)
+|++++|+++.+..+++|++.. ...+.+++|+|++ +++++++.|+.|++|| .++.
T Consensus 186 ~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 186 NSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp CTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred cCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 9999999999544569999861 2347789999998 9999999999999999 3333
Q ss_pred eeeecccC-------------CCceEEEcCCCCEEEEEcCCCcEEEEEcCC-CCCCCcccccCCcC--------------
Q psy16005 166 VSSLPIDY-------------EPSSISLDHEHGLVAVGGADSKVHIYELNN-KSLSPKAELDHLGP-------------- 217 (248)
Q Consensus 166 ~~~~~~~~-------------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~-------------- 217 (248)
...+..+. .+.+++|+|++++|++++. +.|++||+++ ++....+. .|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ-VHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE-SCGGGTTTHHHHHHTSGGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee-ccccccccccccccccccc
Confidence 35555433 7899999999999999998 9999999997 66554443 45431
Q ss_pred -eEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 218 -VTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 218 -v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+..++|+|++++|++++.||.|++||+.+++
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 3349999999999999999999999998764
No 45
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.5e-39 Score=262.01 Aligned_cols=244 Identities=22% Similarity=0.290 Sum_probs=212.9
Q ss_pred cCcceecccccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCC----ceeeeeecCCcc-eEEEEECc--CCcEEEE
Q psy16005 3 YSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP----AISDIYTEHSCA-VNVAKYSP--SGFYIAS 75 (248)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~----~~~~~~~~~~~~-v~~~~~s~--~~~~l~~ 75 (248)
++.+..++..+..|.+.|.+++|+|+|++|++++++.|++|++.++ +....+.+|... |.+++|+| ++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 4 ISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp EEEEEEECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE
T ss_pred cchhhccCCCCCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEE
Confidence 4667788888899999999999999999999999999999999988 888889999999 99999999 9999999
Q ss_pred EccCCeEEEEECCCC------ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-----cEEEEEcc--------CCCCC
Q psy16005 76 GDISGKVRIWDTVNK------EHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLP--------IDYEP 136 (248)
Q Consensus 76 ~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~--------~~~~~ 136 (248)
++.||.|++||+.++ +......+..|...|.+++|+|++++|++++.+ .+.+|+.. ....+
T Consensus 84 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 84 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRI 163 (615)
T ss_dssp EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCE
T ss_pred ecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccE
Confidence 999999999999765 333456677889999999999999999999976 24555532 34567
Q ss_pred ceeEeCCCCC-EEEEEcCCCeEEEEE--CCceeeeec-ccC---CCceEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCCC
Q psy16005 137 SSISLDHEHG-LVAVGGADSKISIVE--NGAKVSSLP-IDY---EPSSISLDHE-HGLVAVGGADSKVHIYELNNKSLSP 208 (248)
Q Consensus 137 ~~~~~~~~~~-~~~~~~~~~~i~~~~--~~~~~~~~~-~~~---~~~~~~~s~~-~~~l~~~~~d~~v~i~d~~~~~~~~ 208 (248)
.+++|+|+++ .+++++.|+.|++|| .++.+..+. +.. .+.+++|+|+ +++|++++.|+.|++||+++++...
T Consensus 164 ~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243 (615)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence 8999999998 899999999999999 445556665 444 6899999999 9999999999999999999988766
Q ss_pred cccc---cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 209 KAEL---DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 209 ~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.+.. .|...|.+++|+ ++++|++++.|+.|++||++++
T Consensus 244 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 244 YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 5534 789999999999 9999999999999999999875
No 46
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=236.11 Aligned_cols=227 Identities=16% Similarity=0.231 Sum_probs=179.8
Q ss_pred cEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee--cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee--
Q psy16005 20 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK-- 95 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-- 95 (248)
..+++||+++ +|++|.|++|+|||+.+++..+.+. +|...|.+++|+|++++|++|+.||+|++||+++++.+..
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence 4679999986 8888889999999999999887665 6778899999999999999999999999999988764321
Q ss_pred -------------------------------------eeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC----
Q psy16005 96 -------------------------------------NEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID---- 133 (248)
Q Consensus 96 -------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~---- 133 (248)
..+.+|...+..+.+.++++++++++.++ +++|++...
T Consensus 107 ~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 186 (318)
T 4ggc_A 107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 186 (318)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS
T ss_pred CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc
Confidence 12334666777778888888888887766 578887532
Q ss_pred ----------CCCceeEeCCCCCE---EEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEc--CCCcE
Q psy16005 134 ----------YEPSSISLDHEHGL---VAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGG--ADSKV 196 (248)
Q Consensus 134 ----------~~~~~~~~~~~~~~---~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d~~v 196 (248)
..+..+.+.|++.. +++++.++.|++|+ .............+..+.++|++..+++++ .|+.|
T Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i 266 (318)
T 4ggc_A 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 266 (318)
T ss_dssp CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEE
Confidence 23445666665542 23566778888888 344444555666788899999999877654 79999
Q ss_pred EEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 197 HIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 197 ~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
++||+++++.+..+. +|.+.|++++|+|++++|++++.||+|+|||+.+.+
T Consensus 267 ~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 267 VIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999998876665 799999999999999999999999999999997753
No 47
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.4e-39 Score=254.90 Aligned_cols=233 Identities=10% Similarity=0.112 Sum_probs=181.8
Q ss_pred cccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCCceee--eeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENPAISD--IYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~~~~~--~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|...|+|++|+| ++++||+|+ ||.|+|||+.+++... .+.+|.+.|++++|+| ++++|++++.||+|++||+++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 4678899999999 567888886 9999999998766443 4558999999999998 789999999999999999987
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCCCCC-EEEEEcCCCeEE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDHEHG-LVAVGGADSKIS 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~i~ 158 (248)
+..........+...+.+++|+|++++|++++.++ +++|+++. ...+.+++|+|++. ++++++.|+.|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 65433233334455788999999999999999877 59999753 34578899999876 788999999999
Q ss_pred EEECC--cee----eeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC------------------------
Q psy16005 159 IVENG--AKV----SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP------------------------ 208 (248)
Q Consensus 159 ~~~~~--~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~------------------------ 208 (248)
+||.. +.. ....+...+.+++|+|+|++|++++.||.|++||+.+++...
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY 356 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred EEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC
Confidence 99932 221 223456678999999999999999999999999987542110
Q ss_pred ------------------------------------cccccCCcCeEEE-EEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 209 ------------------------------------KAELDHLGPVTDC-SFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 209 ------------------------------------~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+..+|...|.++ +|+|+|++|++++ |+.|+||++++++
T Consensus 357 ~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 357 NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 0011355567776 6999999999876 7899999999875
No 48
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=244.44 Aligned_cols=241 Identities=15% Similarity=0.223 Sum_probs=198.8
Q ss_pred cceecccccccccCCcEEEEeCCCCCEEEE-eC----CcEEEEEecCCCceeeee-ecCCcceEEEEECcC---CcEEEE
Q psy16005 5 NKYIFATLPRTQRGQPIVLGGDPKGKNFLY-TN----GNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPS---GFYIAS 75 (248)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~----~~~v~v~~~~~~~~~~~~-~~~~~~v~~~~~s~~---~~~l~~ 75 (248)
.++.+..+..+|.+.|.+++|+|+++.+++ ++ |+.|++||+.+++..... .+|...|.+++|+|+ +++|++
T Consensus 6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence 344555555679999999999999976654 42 799999999988765443 378999999999998 699999
Q ss_pred EccCCeEEEEECCCCc-eeeeeeccCCCCCeeEEE------EecCCCEEEEEeCCc-EEEEEccCCC-------------
Q psy16005 76 GDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIA------WSPDNQRMISIVENG-AKVSSLPIDY------------- 134 (248)
Q Consensus 76 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~~~-~~i~~~~~~~------------- 134 (248)
++.||.|++||+.+++ .. ..+.+|...|.++. |+|++++|++++.++ +++|++....
T Consensus 86 ~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPV--YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN 163 (357)
T ss_dssp EETTSCEEEECTTSCSSCS--EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred ecCCCeEEEEeCCCCCccE--EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence 9999999999999876 33 56678999999995 468999999999876 6999986543
Q ss_pred --CCceeE----eCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcC---CCCEEEEEcCCCcEEEEEcCC
Q psy16005 135 --EPSSIS----LDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDH---EHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 135 --~~~~~~----~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~d~~v~i~d~~~ 203 (248)
.+.++. ++|+++++++++.|+.|++|| .++......+...+.+++|+| ++.+|++++.||.|++||+++
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 334455 679999999999999999999 445555566778899999999 999999999999999999998
Q ss_pred CCCCCccc----ccCCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCCC
Q psy16005 204 KSLSPKAE----LDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 204 ~~~~~~~~----~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~ 247 (248)
++...... .+|...|.+++|+|+++ +|++++.||.|++||++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 77654432 26899999999999998 8999999999999998753
No 49
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-37 Score=243.90 Aligned_cols=235 Identities=16% Similarity=0.211 Sum_probs=200.7
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.+...|.+.|.+++|+|++++|++++ |+.|++||+.+++....+..|...|.+++| ++++|++++.||.|++||++.
T Consensus 128 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~ 205 (401)
T 4aez_A 128 LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRI 205 (401)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS
T ss_pred eeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEeccc
Confidence 33344788999999999999999986 999999999999999999999999999999 457999999999999999985
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCC-EEEEEc--CCC
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHG-LVAVGG--ADS 155 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~-~~~~~~--~~~ 155 (248)
... ....+..|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|+|++. ++++++ .|+
T Consensus 206 ~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 206 ANH-QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp SSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred Ccc-eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence 443 2356778999999999999999999999766 69999753 45678999999764 666654 799
Q ss_pred eEEEEE--CCceeeeecccCCCceEEEcCCCCEEEE--EcCCCcEEEEEcCCCCCCCcc-cccCCcCeEEEEEcCCCcEE
Q psy16005 156 KISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAV--GGADSKVHIYELNNKSLSPKA-ELDHLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~d~~v~i~d~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l 230 (248)
.|++|| .++.+..+.....+.+++|+|+++++++ |+.||.|++||+.+++..... ..+|...|.+++|+|++++|
T Consensus 285 ~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (401)
T 4aez_A 285 QIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRIL 364 (401)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEE
Confidence 999999 6677778888888999999999999999 558999999999987654332 23689999999999999999
Q ss_pred EEEcCCCeEEEEECCCCC
Q psy16005 231 VASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 231 ~~~~~d~~i~vw~~~~~~ 248 (248)
++++.||.|++|++.+++
T Consensus 365 ~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 365 STAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEECTTSEEEEEECCC--
T ss_pred EEEeCCCcEEEEECCCCc
Confidence 999999999999998764
No 50
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.7e-38 Score=266.31 Aligned_cols=232 Identities=14% Similarity=0.186 Sum_probs=205.3
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.+++|+|+|++|++++ +|.|++||+.+++....+..|..+|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 35888999999999999999987 89999999999999999999999999999999999999999999999999999885
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCC-CCCEEEEEcCCCeEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID-----------YEPSSISLDH-EHGLVAVGGADSKISI 159 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~i~~ 159 (248)
+ ..+.+|...|.+++|+|++++|++++.++ +++|++... ..+.+++|+| +++.+++++.|+.|++
T Consensus 90 ~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v 167 (814)
T 3mkq_A 90 V--VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (814)
T ss_dssp E--EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred E--EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 4 56678999999999999999999999887 599997643 4567899999 8899999999999999
Q ss_pred EEC--Cceeeeec--ccCCCceEEEcC--CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 160 VEN--GAKVSSLP--IDYEPSSISLDH--EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 160 ~~~--~~~~~~~~--~~~~~~~~~~s~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
||. +.....+. ....+.+++|+| ++.++++++.||.|++||+++++....+. +|...|.+++|+|++++|+++
T Consensus 168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp EETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEE
T ss_pred EECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEE
Confidence 993 33444433 236789999999 99999999999999999999888755544 688999999999999999999
Q ss_pred cCCCeEEEEECCCCC
Q psy16005 234 DAHRKVVLYRVPDFE 248 (248)
Q Consensus 234 ~~d~~i~vw~~~~~~ 248 (248)
+.||.|++||+.+++
T Consensus 247 ~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 247 SEDGTLKIWNSSTYK 261 (814)
T ss_dssp ETTSCEEEEETTTCS
T ss_pred eCCCeEEEEECCCCc
Confidence 999999999998753
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.3e-38 Score=261.28 Aligned_cols=232 Identities=14% Similarity=0.183 Sum_probs=194.1
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|...|.+++|+|++++|++++ |+.|++||+.+++..+.+.+|...|.+++|+|++++|++++.|++|++||......
T Consensus 427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc
Confidence 45889999999999999999987 99999999999999999999999999999999999999999999999999865532
Q ss_pred ee-eeeccCCCCCeeEEEEecCC--CEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 93 IL-KNEFHPIGGPIKDIAWSPDN--QRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 93 ~~-~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
.. .....+|...|.+++|+|++ ..+++++.++ +++|++.. ...+.+++++|+++++++++.|+.|+
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCE
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 21 12235688899999999987 5788888776 69999753 35678899999999999999999999
Q ss_pred EEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc------------------cCCcCe
Q psy16005 159 IVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL------------------DHLGPV 218 (248)
Q Consensus 159 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------------------~~~~~v 218 (248)
+|| .++.+..+.....+.+++|+|++.++++++ ++.|++||+++++.+..+.. .+...+
T Consensus 587 iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
T 3dm0_A 587 LWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665 (694)
T ss_dssp EEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred EEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence 999 566677777777889999999999888776 55699999998765433221 112247
Q ss_pred EEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 219 TDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 219 ~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++++|+|+|++|++++.||.|++|++..
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 8999999999999999999999999864
No 52
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-37 Score=242.33 Aligned_cols=233 Identities=10% Similarity=0.106 Sum_probs=192.7
Q ss_pred ccccCCcEEEEeCCCC-CEEEEeC-CcEEEEEecCCCceeeeee--cCCcceEEEEECc-CCcEEEEEccCCeEEEEECC
Q psy16005 14 RTQRGQPIVLGGDPKG-KNFLYTN-GNSVIIRNIENPAISDIYT--EHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~ 88 (248)
..|.+.|.+++|+|++ ++|++++ |+.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+.|++||++
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 4588999999999999 8999987 9999999999888776665 6999999999999 78999999999999999999
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc---------CCCCCceeEeCCCCC-EEEEEcCCCeE
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP---------IDYEPSSISLDHEHG-LVAVGGADSKI 157 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~i 157 (248)
+...........|...+.+++|+|++++|++++.++. ++|+++ ....+.+++|+|+++ ++++++.|+.|
T Consensus 150 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 229 (383)
T 3ei3_B 150 GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATV 229 (383)
T ss_dssp SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEE
Confidence 6443222223345588999999999999999998874 899974 345678999999999 99999999999
Q ss_pred EEEEC------CceeeeecccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcccc------cCC---------
Q psy16005 158 SIVEN------GAKVSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAEL------DHL--------- 215 (248)
Q Consensus 158 ~~~~~------~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~--------- 215 (248)
++||. +..+..+.+...+.+++|+| ++++|++++.|+.|++||+++++....+.. .|.
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 309 (383)
T 3ei3_B 230 KLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP 309 (383)
T ss_dssp EEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECS
T ss_pred EEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccC
Confidence 99993 44666677788899999999 999999999999999999998876544431 122
Q ss_pred -cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 216 -GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 216 -~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..+..++|+|++++ +++.|+.|++||+.+++
T Consensus 310 ~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 310 MYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp SSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred CCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 34445677777776 77889999999998764
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-37 Score=258.30 Aligned_cols=229 Identities=17% Similarity=0.237 Sum_probs=194.8
Q ss_pred ccccCCcEEEEeCCCC-CEEEEeC-CcEEEEEecCCC-----ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 14 RTQRGQPIVLGGDPKG-KNFLYTN-GNSVIIRNIENP-----AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
..|.+.|++++|+|++ ++|++++ |+.|++|++.+. ...+.+.+|...|.+++|+|++++|++|+.||+|++||
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 4699999999999975 6788886 999999998763 33456789999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-------------CCCCceeEeCCCC--CEEEE
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-------------DYEPSSISLDHEH--GLVAV 150 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-------------~~~~~~~~~~~~~--~~~~~ 150 (248)
+.++... ..+.+|...|.+++|+|++++|++++.|+ +++|+... ...+.+++|+|++ ..+++
T Consensus 459 ~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 536 (694)
T 3dm0_A 459 LAAGVST--RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536 (694)
T ss_dssp TTTTEEE--EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred CCCCcce--eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence 9988754 56778999999999999999999999877 59998632 2346789999986 58999
Q ss_pred EcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC
Q psy16005 151 GGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 151 ~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
++.|+.|++|| .++....+. +...+.+++|+|++++|++|+.|+.|++||+++++.+... .+...|.+++|+|++
T Consensus 537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~sp~~ 614 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL--EANSVIHALCFSPNR 614 (694)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC--BCSSCEEEEEECSSS
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe--cCCCcEEEEEEcCCC
Confidence 99999999999 444555554 5667899999999999999999999999999998875444 356789999999999
Q ss_pred cEEEEEcCCCeEEEEECCCC
Q psy16005 228 EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~~ 247 (248)
.+|++++ ++.|++||++++
T Consensus 615 ~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 615 YWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp SEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEc-CCCEEEEECCCC
Confidence 8887765 567999999875
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.6e-37 Score=242.85 Aligned_cols=227 Identities=14% Similarity=0.212 Sum_probs=192.5
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (248)
..+....|+|++++|++++ |+.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++||+.+++.+ .
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~ 175 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--R 175 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC--E
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc--e
Confidence 3445557899999999986 999999999999888888899999999999999999999999999999999988754 5
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC----------------------------------CCCceeEe
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID----------------------------------YEPSSISL 141 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~----------------------------------~~~~~~~~ 141 (248)
.+.+|...|.+++|+|++++|++++.++ +++|++... ..+..++|
T Consensus 176 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 6678999999999999999999999877 699997532 33455677
Q ss_pred CCCCCEEEEEcCCCeEEEEE--CCceeeeec--ccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCC-CCcccccCC
Q psy16005 142 DHEHGLVAVGGADSKISIVE--NGAKVSSLP--IDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSL-SPKAELDHL 215 (248)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~--~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~ 215 (248)
+|+++++++++.|+.|++|| .++....+. +...+.+++|+|++. +|++|+.||.|++||+++++. ...+...|.
T Consensus 256 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 335 (420)
T 3vl1_A 256 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG 335 (420)
T ss_dssp SCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT
T ss_pred cCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC
Confidence 89999999999999999999 444444443 456789999999999 999999999999999998765 334443377
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
..|.++.| |++++|++++.|+.|++|++.++
T Consensus 336 ~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 336 TPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp SCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 78888855 57889999999999999998763
No 55
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.4e-37 Score=241.81 Aligned_cols=229 Identities=17% Similarity=0.217 Sum_probs=198.2
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...|++++|+|+|++|++|+ |+.|++||+.+++.+..+.+|...+.+++++ +..|++|+.|+.+++||.......
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~ 222 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 222 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee
Confidence 4677899999999999999987 9999999999999999999999999998875 679999999999999999876543
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC--------------CCCceeEeCCCCC-EEEE--EcCCC
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID--------------YEPSSISLDHEHG-LVAV--GGADS 155 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~--------------~~~~~~~~~~~~~-~~~~--~~~~~ 155 (248)
...+.+|...+..+.|+|+++++++++.++ +++|+.... ..+..++|+|.+. ++++ |+.|+
T Consensus 223 -~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 223 -VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp -EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred -eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence 356778999999999999999999999877 589987532 3456788988654 5544 46899
Q ss_pred eEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEc--CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 156 KISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGG--ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
.|++|| .++....+.....+.++.|+|+++.+++++ .|+.|+|||+.+++.+..+. +|.+.|++++|+|||++|+
T Consensus 302 ~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEE
T ss_pred EEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEE
Confidence 999999 677777888888899999999999888764 78999999999998876665 8999999999999999999
Q ss_pred EEcCCCeEEEEECCCC
Q psy16005 232 ASDAHRKVVLYRVPDF 247 (248)
Q Consensus 232 ~~~~d~~i~vw~~~~~ 247 (248)
+++.|++|+|||+.+.
T Consensus 381 S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 381 SAAADETLRLWRCFEL 396 (420)
T ss_dssp EEETTTEEEEECCSCS
T ss_pred EEecCCeEEEEECCCC
Confidence 9999999999998653
No 56
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-38 Score=247.18 Aligned_cols=232 Identities=15% Similarity=0.178 Sum_probs=199.1
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC----CceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 88 (248)
.|...|.+++|+|++++|++++ |+.|++|++.+ .+....+..|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4778999999999999999986 89999999987 3577778899999999999998 8999999999999999998
Q ss_pred CCc------eee-eeeccCCCCCeeEEEEecC-CCEEEEEeCCc-EEEEEccC----------------CCCCceeEeCC
Q psy16005 89 NKE------HIL-KNEFHPIGGPIKDIAWSPD-NQRMISIVENG-AKVSSLPI----------------DYEPSSISLDH 143 (248)
Q Consensus 89 ~~~------~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~-~~i~~~~~----------------~~~~~~~~~~~ 143 (248)
+++ ... ......|...|.+++|+|+ +.++++++.++ +++|+++. ...+.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 221 1234678899999999999 78888888776 69999753 45678899999
Q ss_pred CC-CEEEEEcCCC---eEEEEECC---ceeeeec--ccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCccccc
Q psy16005 144 EH-GLVAVGGADS---KISIVENG---AKVSSLP--IDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELD 213 (248)
Q Consensus 144 ~~-~~~~~~~~~~---~i~~~~~~---~~~~~~~--~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 213 (248)
++ .++++++.++ .|++||.. .....+. +...+.+++|+| ++++|++++.|+.|++||+++++.+..+. .
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~ 303 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-A 303 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-C
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-C
Confidence 97 6899999998 99999932 3455554 667789999999 99999999999999999999988765554 7
Q ss_pred CCcCeEEEEEcCCC-cEEEEEcCCCeEEEEECCCC
Q psy16005 214 HLGPVTDCSFSPSN-EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 214 ~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~~ 247 (248)
|...|.+++|+|++ ++|++++.|+.|++|++.++
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 89999999999999 89999999999999999875
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.9e-38 Score=248.27 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=194.1
Q ss_pred cEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 20 PIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
+.+++|+|+|++|++++ |+.+++||+.+++....+..| ..+....|+|++++|++++.||.|++||+.+++.. ..+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~ 135 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--EID 135 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE--EET
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee--eec
Confidence 44789999999999997 999999999988777766665 45556678999999999999999999999987743 566
Q ss_pred cCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCce
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAK 165 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~ 165 (248)
..|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+.|++|| .++.
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 78999999999999999999999887 59999853 34577899999999999999999999999 4555
Q ss_pred eeeecc-------------------------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEE
Q psy16005 166 VSSLPI-------------------------DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTD 220 (248)
Q Consensus 166 ~~~~~~-------------------------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~ 220 (248)
+..+.. ...+.+++|+|++++|++|+.||.|++||+++++........|...|.+
T Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 295 (420)
T 3vl1_A 216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS 295 (420)
T ss_dssp EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence 555542 2445667789999999999999999999999988776666568899999
Q ss_pred EEEcCCCc-EEEEEcCCCeEEEEECCCCC
Q psy16005 221 CSFSPSNE-YLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 221 ~~~s~~~~-~l~~~~~d~~i~vw~~~~~~ 248 (248)
++|+|+++ +|++++.||.|++||+++++
T Consensus 296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 99999999 99999999999999998763
No 58
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.8e-37 Score=235.59 Aligned_cols=230 Identities=13% Similarity=0.125 Sum_probs=193.7
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc---eeeeeecCCcceEEEEECcCCc-EEEEEccCCeEEEEE
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA---ISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWD 86 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd 86 (248)
+...|.+.|.+++|+|++++|++++ |+.|++|++.+++ ....+..|...|.+++|+|+++ +|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 4457899999999999999999886 9999999998877 3444558999999999999999 999999999999999
Q ss_pred C-CCCceeeeeeccC--CCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------C---------CCCceeEeCCC
Q psy16005 87 T-VNKEHILKNEFHP--IGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------D---------YEPSSISLDHE 144 (248)
Q Consensus 87 ~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~---------~~~~~~~~~~~ 144 (248)
+ .+++. ..+.. |...|.+++|+| ++.+++++.++ +++|+++. . ..+.+++++++
T Consensus 86 ~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 86 LIGSPSF---QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSSE---EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred eccCCce---EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence 9 87754 45667 999999999999 99999999877 59999764 2 34567888887
Q ss_pred CCEEEEEcCCCeEEEEECCc---e---eeeecccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCC------CCCCccc
Q psy16005 145 HGLVAVGGADSKISIVENGA---K---VSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNK------SLSPKAE 211 (248)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~---~---~~~~~~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~------~~~~~~~ 211 (248)
+ +++++.++.|++||... . .....+...+.+++|+| +++++++++.||.|++|+++.. +....+
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~- 238 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF- 238 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE-
T ss_pred c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee-
Confidence 7 89999999999999433 2 12334567789999999 9999999999999999999887 433333
Q ss_pred ccCCc---------CeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 212 LDHLG---------PVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 212 ~~~~~---------~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..|.. .|.+++|+|++++|++++.||.|++||+.+++
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 24543 99999999999999999999999999998763
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=238.87 Aligned_cols=233 Identities=14% Similarity=0.205 Sum_probs=190.4
Q ss_pred cccCCcEEEEeCCC---CCEEEEeC-CcEEEEEecCCCc-eeeeeecCCcceEEEE------ECcCCcEEEEEccCCeEE
Q psy16005 15 TQRGQPIVLGGDPK---GKNFLYTN-GNSVIIRNIENPA-ISDIYTEHSCAVNVAK------YSPSGFYIASGDISGKVR 83 (248)
Q Consensus 15 ~~~~~v~~~~~s~~---~~~l~~~~-~~~v~v~~~~~~~-~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~ 83 (248)
.|...|.+++|+|+ +++|++++ |+.|++||+.+++ ....+.+|...|.+++ |+|++++|++++.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 57889999999999 68888886 9999999999887 7888889999999995 578999999999999999
Q ss_pred EEECCCCceeeeeeccCC----CCCeeEEE----EecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCC--
Q psy16005 84 IWDTVNKEHILKNEFHPI----GGPIKDIA----WSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDH-- 143 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~----~~~v~~~~----~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~-- 143 (248)
+||+++++... ..+..| ...+.+++ |+|+++++++++.++ +++|+++. ...+.+++|+|
T Consensus 143 vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPV-ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCS-EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcc-eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 99999876221 333333 33888888 788999999999876 59999753 45678999999
Q ss_pred -CCCEEEEEcCCCeEEEEEC--Cceeeee------cccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCC-----
Q psy16005 144 -EHGLVAVGGADSKISIVEN--GAKVSSL------PIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSP----- 208 (248)
Q Consensus 144 -~~~~~~~~~~~~~i~~~~~--~~~~~~~------~~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~----- 208 (248)
+++.+++++.|+.|++||. ++....+ .+...+.+++|+|+++ +|++++.||.|++||++++....
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 9999999999999999992 2222222 4667789999999998 89999999999999998754321
Q ss_pred -------------cccccCCcCeEEEEEcCCCcEEE-EEcCCCeEEEEECCCCC
Q psy16005 209 -------------KAELDHLGPVTDCSFSPSNEYLV-ASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 209 -------------~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~vw~~~~~~ 248 (248)
....+|...|++++|+|++++|+ +++.|+.|++||+.+++
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 12236889999999999999998 79999999999998764
No 60
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-37 Score=243.16 Aligned_cols=233 Identities=14% Similarity=0.137 Sum_probs=195.7
Q ss_pred cccCCcEEEEeCCC----C---CEEEEeC-CcEEEEEecCCCce-----eeeeecC-----CcceEEEEEC----cCCcE
Q psy16005 15 TQRGQPIVLGGDPK----G---KNFLYTN-GNSVIIRNIENPAI-----SDIYTEH-----SCAVNVAKYS----PSGFY 72 (248)
Q Consensus 15 ~~~~~v~~~~~s~~----~---~~l~~~~-~~~v~v~~~~~~~~-----~~~~~~~-----~~~v~~~~~s----~~~~~ 72 (248)
.|...|.+++|+|+ + ++|++++ |+.|++|++.+++. ...+..| ...|.+++|+ |++++
T Consensus 60 ~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 60 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCce
Confidence 57889999999999 9 8999886 99999999998886 7778888 5899999999 99999
Q ss_pred -EEEEccCCeEEEEECCC------Cceee-----eeec-----cCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc---
Q psy16005 73 -IASGDISGKVRIWDTVN------KEHIL-----KNEF-----HPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP--- 131 (248)
Q Consensus 73 -l~~~~~dg~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~--- 131 (248)
|++++.||.|++||+.+ ++.+. .... ..|...+.+++|+|++ .+++++.++ +++|+++
T Consensus 140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 140 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred EEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc
Confidence 99999999999999988 55432 2221 4578899999999999 999998777 5899874
Q ss_pred ----------C---CCCCceeEeCCCCCEEEEEcCC---CeEEEEE--CCceeeeec--------------ccCCCceEE
Q psy16005 132 ----------I---DYEPSSISLDHEHGLVAVGGAD---SKISIVE--NGAKVSSLP--------------IDYEPSSIS 179 (248)
Q Consensus 132 ----------~---~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~--~~~~~~~~~--------------~~~~~~~~~ 179 (248)
. ...+.+++|+|+++++++++.| +.|++|| .++.+..+. +...+.+++
T Consensus 219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 2 5567889999999999999999 9999999 455666665 466789999
Q ss_pred EcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc-----cC---------------CcCeEEEEEcCCC----------cE
Q psy16005 180 LDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-----DH---------------LGPVTDCSFSPSN----------EY 229 (248)
Q Consensus 180 ~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----~~---------------~~~v~~~~~s~~~----------~~ 229 (248)
|+|++++|++++.||.|++||+++++....+.. .| ...|.+++|+|++ ++
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 999999999999999999999998876554431 45 8899999999998 79
Q ss_pred EEEEcCCCeEEEEECCCCC
Q psy16005 230 LVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~~~~ 248 (248)
|++++.||.|++|++++|+
T Consensus 379 l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEETTTEEEEEEEEC--
T ss_pred EEEecCCCcEEEEEcCCCC
Confidence 9999999999999999875
No 61
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=260.38 Aligned_cols=234 Identities=19% Similarity=0.202 Sum_probs=198.4
Q ss_pred cccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecC--CCceeeeeecCCcceEEEEECcC--CcEEEEEccCCeEEEEEC
Q psy16005 13 PRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE--NPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDT 87 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~ 87 (248)
..+|.+.|++++|+|+|++|++++ ||.|++||+. +++....+.+|.++|.+++|+|+ +++|++|+.||.|++||+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 357999999999999999999986 9999999998 45667788899999999999987 999999999999999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC------------CCCceeEeCC---------
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID------------YEPSSISLDH--------- 143 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~--------- 143 (248)
.+++......+..|...|.+++|+|+ ++.+++++.++ +++|++... ..+.++.|+|
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence 98875455677889999999999999 99999999887 599998643 4567889999
Q ss_pred ----CCCEEEEEcCCCeEEEEE--CC----ceeeeec-ccCCCceEEEcCC---CCEEEEEcCCCcEEEEEcCCCCCC--
Q psy16005 144 ----EHGLVAVGGADSKISIVE--NG----AKVSSLP-IDYEPSSISLDHE---HGLVAVGGADSKVHIYELNNKSLS-- 207 (248)
Q Consensus 144 ----~~~~~~~~~~~~~i~~~~--~~----~~~~~~~-~~~~~~~~~~s~~---~~~l~~~~~d~~v~i~d~~~~~~~-- 207 (248)
++..+++++.||.|++|| .+ .....+. +...+.+++|+|+ +++|++++.||.|++||+++++..
T Consensus 165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 244 (753)
T 3jro_A 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244 (753)
T ss_dssp --CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB
T ss_pred ccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce
Confidence 589999999999999999 23 2233333 5667899999999 899999999999999999987421
Q ss_pred --CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 208 --PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 208 --~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
......|...|++++|+|++++|++++.||.|++|++.+
T Consensus 245 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 112225888999999999999999999999999999874
No 62
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=229.84 Aligned_cols=235 Identities=11% Similarity=0.059 Sum_probs=200.7
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.....+ .+|.+.|.+++| |++++|++++ |+.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|
T Consensus 9 ~~~~~l-~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATL-KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEE-CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHh-hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 344455 458999999999 9999999987 9999999999998888899999999999999999999999999999999
Q ss_pred ECCCCce-eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc--------CCCCCceeEeCC-CCCEEEEEcCC
Q psy16005 86 DTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP--------IDYEPSSISLDH-EHGLVAVGGAD 154 (248)
Q Consensus 86 d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~ 154 (248)
++..... .....+..|...+.+++| +++++++++.++ +++|+.. ....+..+.+.| +++.+++++.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 9876531 123566789999999999 577899988777 4899832 345567788877 89999999999
Q ss_pred CeEEEEECCceeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 155 SKISIVENGAKVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 155 ~~i~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
+.+++||.++....+. +...+.+++|+|++. +++++.|+.|++||+++++....+. .|...|.+++|+|++ .|++
T Consensus 165 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~ 241 (313)
T 3odt_A 165 KTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNG-DIVS 241 (313)
T ss_dssp SCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-CEEE
T ss_pred CCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEecCC-CEEE
Confidence 9999999877777665 566789999999998 8999999999999999988765554 799999999999999 5889
Q ss_pred EcCCCeEEEEECCCCC
Q psy16005 233 SDAHRKVVLYRVPDFE 248 (248)
Q Consensus 233 ~~~d~~i~vw~~~~~~ 248 (248)
++.||.|++||+++++
T Consensus 242 ~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 242 CGEDRTVRIWSKENGS 257 (313)
T ss_dssp EETTSEEEEECTTTCC
T ss_pred EecCCEEEEEECCCCc
Confidence 9999999999998764
No 63
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.7e-37 Score=237.53 Aligned_cols=232 Identities=13% Similarity=0.162 Sum_probs=193.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.|.+.|.+++|+|++++|++++ |+.|++||+.+++.... +..|...|.+++|+|++++|++++.||.|++||++.++
T Consensus 50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence 4788999999999999999987 89999999988875443 35789999999999999999999999999999998776
Q ss_pred e--eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc----------------------------CCCCCceeE
Q psy16005 92 H--ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP----------------------------IDYEPSSIS 140 (248)
Q Consensus 92 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~----------------------------~~~~~~~~~ 140 (248)
. ........|...|.+++|+|++++|++++.++ +++|++. ....+.+++
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (372)
T 1k8k_C 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209 (372)
T ss_dssp TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE
Confidence 3 12233467889999999999999999999776 6999952 134567899
Q ss_pred eCCCCCEEEEEcCCCeEEEEE--CCceeeeecc-cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC--CC----------
Q psy16005 141 LDHEHGLVAVGGADSKISIVE--NGAKVSSLPI-DYEPSSISLDHEHGLVAVGGADSKVHIYELNN--KS---------- 205 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~--~~---------- 205 (248)
|+|+++++++++.|+.|++|| .++.+..+.. ...+.+++|+|+++++++| .|+.|++|++.+ ++
T Consensus 210 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~ 288 (372)
T 1k8k_C 210 FSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVP 288 (372)
T ss_dssp ECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcc
Confidence 999999999999999999999 5666666654 4478999999999988888 899999999987 31
Q ss_pred ----------------------CC------CcccccCCcCeEEEEEc-CCC---cEEEEEcCCCeEEEEECCCC
Q psy16005 206 ----------------------LS------PKAELDHLGPVTDCSFS-PSN---EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 206 ----------------------~~------~~~~~~~~~~v~~~~~s-~~~---~~l~~~~~d~~i~vw~~~~~ 247 (248)
.. .....+|...|++++|+ ++| ++|++++.||.|++|+++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 289 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp --------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 00 22223799999999966 666 99999999999999998653
No 64
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-36 Score=231.68 Aligned_cols=230 Identities=13% Similarity=0.205 Sum_probs=201.4
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC-----CeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~ 88 (248)
.|.+.|.+++|+|++++|++++ |+.|++||+.+++....+. +...+.+++|+|+++++++++.+ |.|++||+.
T Consensus 72 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 4788999999999999999986 9999999999999888886 88899999999999999999998 999999997
Q ss_pred CCcee---------eeeeccCCCC--CeeEEEEecCCCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCCCC
Q psy16005 89 NKEHI---------LKNEFHPIGG--PIKDIAWSPDNQRMISIVENG-AKVSSLPI-----------DYEPSSISLDHEH 145 (248)
Q Consensus 89 ~~~~~---------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~ 145 (248)
.+... ....+..|.. .+.+++|+|++++|++++.++ +.+|++.. ...+.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL 230 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence 65421 1122334444 899999999999999999877 59999864 3457789999999
Q ss_pred CEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCC--------------cEEEEEcCCCCCCCc
Q psy16005 146 GLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS--------------KVHIYELNNKSLSPK 209 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~--------------~v~i~d~~~~~~~~~ 209 (248)
+++++++.|+.|++|| .++.+..+.....+.+++|+|+++++++++.++ .+++||..+++....
T Consensus 231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred CEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence 9999999999999999 566777777888899999999999999999888 899999999887665
Q ss_pred ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 210 AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 210 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
+. +|...|.+++|+|++++|++++.||.|++|++++
T Consensus 311 ~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 311 VQ-GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ee-cccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 54 7999999999999999999999999999999875
No 65
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-37 Score=240.65 Aligned_cols=232 Identities=14% Similarity=0.144 Sum_probs=193.7
Q ss_pred ccCCcEEEEeCCCCC-EEEEe----------C-CcEEEEEecCCCc---eeeeeecCCcceEEEEECcCCcEEEEEccCC
Q psy16005 16 QRGQPIVLGGDPKGK-NFLYT----------N-GNSVIIRNIENPA---ISDIYTEHSCAVNVAKYSPSGFYIASGDISG 80 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~-~l~~~----------~-~~~v~v~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 80 (248)
+...+.+++|+|+++ +++++ + |+.|++||+.+++ ....+ .|...|.+++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 335688999999997 88888 5 8899999998876 33333 6889999999999999999999999
Q ss_pred eEEEEECCCC--ceeeeeeccCCCCCeeEEEEecC-CCEEEEEeCCc-EEEEEccCCC-------------------CCc
Q psy16005 81 KVRIWDTVNK--EHILKNEFHPIGGPIKDIAWSPD-NQRMISIVENG-AKVSSLPIDY-------------------EPS 137 (248)
Q Consensus 81 ~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~-~~i~~~~~~~-------------------~~~ 137 (248)
.|++||+... .......+..|...|.+++|+|+ +++|++++.++ +++|++.... .+.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 9999999872 11133567789999999999998 89999998776 6999986432 456
Q ss_pred eeEeCCC-CCEEEEEcCCCeEEEEE--CCceeeeecc-------cCCCceEEEcCCC-CEEEEEcCCC---cEEEEEcCC
Q psy16005 138 SISLDHE-HGLVAVGGADSKISIVE--NGAKVSSLPI-------DYEPSSISLDHEH-GLVAVGGADS---KVHIYELNN 203 (248)
Q Consensus 138 ~~~~~~~-~~~~~~~~~~~~i~~~~--~~~~~~~~~~-------~~~~~~~~~s~~~-~~l~~~~~d~---~v~i~d~~~ 203 (248)
+++|+|+ +.++++++.|+.|++|| .++.+..+.. ...+.+++|+|++ .++++++.|+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 8899999 78999999999999999 4555666654 4668999999997 5899999998 999999998
Q ss_pred CCCCCcccc-cCCcCeEEEEEcC-CCcEEEEEcCCCeEEEEECCCCC
Q psy16005 204 KSLSPKAEL-DHLGPVTDCSFSP-SNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 204 ~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+........ +|...|.+++|+| ++++|++++.|+.|++||+++++
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE 296 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc
Confidence 754444444 7999999999999 89999999999999999998764
No 66
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=232.21 Aligned_cols=232 Identities=16% Similarity=0.232 Sum_probs=190.7
Q ss_pred ccccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCCceeeeee-------------cCCcceEEEEECc-CCcEEEEEc
Q psy16005 14 RTQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENPAISDIYT-------------EHSCAVNVAKYSP-SGFYIASGD 77 (248)
Q Consensus 14 ~~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-------------~~~~~v~~~~~s~-~~~~l~~~~ 77 (248)
..|.+.|.+++|+| ++++|++++ |+.|++||+.+++....+. +|...|.+++|+| ++++|++++
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 45899999999999 999999987 9999999999877655543 4999999999999 788999999
Q ss_pred cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCC---CEEEEEeCCc-EEEEEccC----------CCCCceeEeCC
Q psy16005 78 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN---QRMISIVENG-AKVSSLPI----------DYEPSSISLDH 143 (248)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~ 143 (248)
.||.|++||+.+++...... +...+.++.|+|.+ .++++++.++ +.+|++.. ...+.+++++|
T Consensus 120 ~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp TTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred CCCeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence 99999999999987653332 56789999999854 4888888766 69999863 34567899999
Q ss_pred CCC-EEEEEcCCCeEEEEECCc---eeeee----------------cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 144 EHG-LVAVGGADSKISIVENGA---KVSSL----------------PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 144 ~~~-~~~~~~~~~~i~~~~~~~---~~~~~----------------~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
+++ ++++++.|+.|++||... ....+ .+...+.+++|+|++++|++++.||.|++||+++
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 998 689999999999999432 22222 2455688999999999999999999999999987
Q ss_pred CCCCCc----------------------------------------------ccccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 204 KSLSPK----------------------------------------------AELDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 204 ~~~~~~----------------------------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
++.... ...+|...|++++|+|++++|++++.||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 653211 1125888999999999999999999999
Q ss_pred eEEEEECCCCC
Q psy16005 238 KVVLYRVPDFE 248 (248)
Q Consensus 238 ~i~vw~~~~~~ 248 (248)
.|++||+++++
T Consensus 357 ~i~iw~~~~~~ 367 (408)
T 4a11_B 357 NILAWVPSLYE 367 (408)
T ss_dssp CEEEEEECC--
T ss_pred eEEEEeCCCCC
Confidence 99999998764
No 67
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-37 Score=247.59 Aligned_cols=229 Identities=8% Similarity=0.000 Sum_probs=180.5
Q ss_pred ccCCcEEEEeCCCC---------CEEEE-------------------eC-CcEEEEEecCCCcee----eeeecCCcceE
Q psy16005 16 QRGQPIVLGGDPKG---------KNFLY-------------------TN-GNSVIIRNIENPAIS----DIYTEHSCAVN 62 (248)
Q Consensus 16 ~~~~v~~~~~s~~~---------~~l~~-------------------~~-~~~v~v~~~~~~~~~----~~~~~~~~~v~ 62 (248)
+.+.|.+++|+|++ ++||+ ++ |+.|+||++.+++.. ..+..|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 35678888888876 56655 33 678999999877642 33557788999
Q ss_pred EEEECcC------CcEEEEEccCCeEEEEECCCCcee---------eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EE
Q psy16005 63 VAKYSPS------GFYIASGDISGKVRIWDTVNKEHI---------LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AK 126 (248)
Q Consensus 63 ~~~~s~~------~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~ 126 (248)
+++|+|+ +.+||+++.||+|++||+..+... ....+.+|...|.+++|++++ .|++++.|+ ++
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEE
Confidence 9999996 579999999999999999876421 123567889999999999864 788888877 59
Q ss_pred EEEccCC-----------CCCcee--EeCCCC-CEEEEEcCCCeEEEEECC--ceeeeeccc---CCCceEEEcCCCCEE
Q psy16005 127 VSSLPID-----------YEPSSI--SLDHEH-GLVAVGGADSKISIVENG--AKVSSLPID---YEPSSISLDHEHGLV 187 (248)
Q Consensus 127 i~~~~~~-----------~~~~~~--~~~~~~-~~~~~~~~~~~i~~~~~~--~~~~~~~~~---~~~~~~~~s~~~~~l 187 (248)
+|++... ..+.++ .+++++ +++++++.|++|++||.. +....+..+ ..+.+++|+|+++.+
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 9998632 335666 567887 899999999999999943 333333222 247889999999999
Q ss_pred EEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 188 AVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 188 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++++.|+.|++||++++.....+. +|.+.|++++|+|++++|++|+.|++|++||+..
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred EEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 999999999999999988765544 7999999999999999999999999999999753
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-36 Score=234.81 Aligned_cols=233 Identities=11% Similarity=0.105 Sum_probs=192.1
Q ss_pred cccccccCCcEEEEeCCC---CC--EEEEeCCcEEEEEecCCCceeeeeec-----CCcceEEEEECcC----CcEEEEE
Q psy16005 11 TLPRTQRGQPIVLGGDPK---GK--NFLYTNGNSVIIRNIENPAISDIYTE-----HSCAVNVAKYSPS----GFYIASG 76 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~---~~--~l~~~~~~~v~v~~~~~~~~~~~~~~-----~~~~v~~~~~s~~----~~~l~~~ 76 (248)
.+..+|.+.|.+++|+|+ +. ++++++++.|++|++.+++....+.. |...|.+++|+|+ +++|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 455679999999999984 33 45555688999999998877766653 5578999999998 6799999
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEcc-------------CCCCCceeEe
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLP-------------IDYEPSSISL 141 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~-------------~~~~~~~~~~ 141 (248)
+.||.|++||+.+++.+ ..+.+|...|.+++|+| ++++|++++.++ +++|+++ ....+.+++|
T Consensus 92 ~~dg~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 92 GSRGIIRIINPITMQCI--KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp ETTCEEEEECTTTCCEE--EEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred cCCCEEEEEEchhceEe--eeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 99999999999988754 56678999999999999 899999999776 6999974 2345778999
Q ss_pred CCCCCEEEEEcCCCeEEEEECC--ceeeeec-----------------------------ccCCCceEEEcCCCCEEEEE
Q psy16005 142 DHEHGLVAVGGADSKISIVENG--AKVSSLP-----------------------------IDYEPSSISLDHEHGLVAVG 190 (248)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~-----------------------------~~~~~~~~~~s~~~~~l~~~ 190 (248)
+|+++++++++.|+.|++||.. +....+. +...+.+++|+ +++++++
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 9999999999999999999943 2222111 56678999998 7799999
Q ss_pred cCCCcEEEEEcCCCCCC-------------CcccccCCcCeEEEEEcCC--CcEEEEEcCCCeEEEEECCCC
Q psy16005 191 GADSKVHIYELNNKSLS-------------PKAELDHLGPVTDCSFSPS--NEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 191 ~~d~~v~i~d~~~~~~~-------------~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+.|+.|++||+++.+.. ......|...|.+++|+|+ +++|++++.||.|++||++++
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 99999999999887541 1122257888999999999 999999999999999999875
No 69
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=233.88 Aligned_cols=226 Identities=14% Similarity=0.217 Sum_probs=183.6
Q ss_pred ccccCCcEEEEeCCC---CCEEEEeC-CcEEEEEecCC-Ccee-eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 14 RTQRGQPIVLGGDPK---GKNFLYTN-GNSVIIRNIEN-PAIS-DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~---~~~l~~~~-~~~v~v~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
..|.+.|.+++|+|+ |++|++++ |+.|++||+.+ +... ..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 568999999999999 58999987 99999999987 5444 678899999999999999999999999999999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEE--ecCCCEEEEEeCCc-EEEEEccCCCCCc---------------------------
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAW--SPDNQRMISIVENG-AKVSSLPIDYEPS--------------------------- 137 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~~~-~~i~~~~~~~~~~--------------------------- 137 (248)
++++.. .+..|...|.+++| +|++++|++++.++ +++|+++......
T Consensus 116 ~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 192 (368)
T 3mmy_A 116 SSNQAI---QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGL 192 (368)
T ss_dssp TTTEEE---EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCE
T ss_pred CCCCce---eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcE
Confidence 988754 34568999999999 88999999999777 5999986443221
Q ss_pred ------------------------eeEeCCCCC----EEEEEcCCCeEEEEECC-----ceeeeecccC-----------
Q psy16005 138 ------------------------SISLDHEHG----LVAVGGADSKISIVENG-----AKVSSLPIDY----------- 173 (248)
Q Consensus 138 ------------------------~~~~~~~~~----~~~~~~~~~~i~~~~~~-----~~~~~~~~~~----------- 173 (248)
.+.+.++.. .+++++.|+.+++|+.. .....+..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
T 3mmy_A 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQD 272 (368)
T ss_dssp EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEE
T ss_pred EEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccc
Confidence 122222222 28899999999999933 2333333322
Q ss_pred --CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 174 --EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 174 --~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
.+.+++|+|++++|++++.||.|++||+++++.+..+. .|...|.+++|+|++++|++++.|+..+.|+
T Consensus 273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp ECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred ccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 58999999999999999999999999999988765554 7899999999999999999999887554444
No 70
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-37 Score=242.13 Aligned_cols=239 Identities=13% Similarity=0.174 Sum_probs=189.9
Q ss_pred ecccccccccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCC---Cce---eeeeecCCcceEEEEECcCCcEEEEEccC
Q psy16005 8 IFATLPRTQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIEN---PAI---SDIYTEHSCAVNVAKYSPSGFYIASGDIS 79 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~---~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 79 (248)
.+..+..+|.+.|.+++|+| ++++|++++ |+.|++||+.+ +.. ...+ .|...|.+++|+|++++|++++.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 34556567889999999999 999999987 99999999876 432 2222 689999999999999999999999
Q ss_pred CeEEEEECC---CCceee--------eeeccC--CCCCeeEEE--EecCCCEEEEEeCCc-EEEEEccC-----------
Q psy16005 80 GKVRIWDTV---NKEHIL--------KNEFHP--IGGPIKDIA--WSPDNQRMISIVENG-AKVSSLPI----------- 132 (248)
Q Consensus 80 g~i~iwd~~---~~~~~~--------~~~~~~--~~~~v~~~~--~~~~~~~l~~~~~~~-~~i~~~~~----------- 132 (248)
|.|++||++ .++... ...+.. +...+.++. ++++++++++++.++ +++|+++.
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 212 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP 212 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence 999999995 443221 122222 566777777 568899999999877 59999742
Q ss_pred -CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeee--cccCCCceEEEc----CCCCEEEEEcCCCcEEEEEcCC
Q psy16005 133 -DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSL--PIDYEPSSISLD----HEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~--~~~~~~~~~~~s----~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
...+.+++|+|+++++++++.|+.|++|| .++.+..+ .+...+.+++++ |++.+|++|+.|+.|++||+++
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 35678999999999999999999999999 45556655 445568889555 5688999999999999999998
Q ss_pred CCCCCccc-----------------------cc--CCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 204 KSLSPKAE-----------------------LD--HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 204 ~~~~~~~~-----------------------~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
++....+. .+ |...|++++|+ ++++|++++.|+.|++||+.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 293 GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 76432222 11 67789999999 78999999999999999998763
No 71
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.4e-36 Score=234.31 Aligned_cols=230 Identities=12% Similarity=0.185 Sum_probs=191.5
Q ss_pred ccccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCC-------ceeeeeecCCcceEEEEECcCC-cEEEEEccCCeEE
Q psy16005 14 RTQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENP-------AISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVR 83 (248)
Q Consensus 14 ~~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~ 83 (248)
.+|.+.|.+++|+| ++++|++++ |+.|++|++.++ +....+.+|...|.+++|+|++ ++|++++.||.|+
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~ 157 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL 157 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence 35889999999999 899999987 999999999987 5677788999999999999998 6999999999999
Q ss_pred EEECCCCceeeeeec--cCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC------------CCCceeEeCCCCCEE
Q psy16005 84 IWDTVNKEHILKNEF--HPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID------------YEPSSISLDHEHGLV 148 (248)
Q Consensus 84 iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~~~~~ 148 (248)
+||+++++.+ ..+ ..|...|.+++|+|++++|++++.++ +++|+++.. ..+..+.|+|+++++
T Consensus 158 iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 158 VWDVGTGAAV--LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp EEETTTTEEE--EEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred EEECCCCCcc--EEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 9999998755 444 77999999999999999999999877 599997521 126788999999999
Q ss_pred EEE---cCCCeEEEEECCc--e---eeeecccCCCceEEEcCCCCEEE-EEcCCCcEEEEEcCCCCCCCccc--ccCCcC
Q psy16005 149 AVG---GADSKISIVENGA--K---VSSLPIDYEPSSISLDHEHGLVA-VGGADSKVHIYELNNKSLSPKAE--LDHLGP 217 (248)
Q Consensus 149 ~~~---~~~~~i~~~~~~~--~---~~~~~~~~~~~~~~~s~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~--~~~~~~ 217 (248)
+++ +.++.|++||... . ...+.+...+.+++|+|++++|+ +|+.|+.|++||+.+++...... ..|...
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~ 315 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES 315 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc
Confidence 999 7999999999332 2 23334566789999999999886 55679999999999887422222 235689
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 218 VTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
|.+++|+|++.++++ .++.+++|++.++
T Consensus 316 v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 316 QRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred ccceEEeccccccee--cceeEEEEEcCCC
Confidence 999999999998764 5669999998764
No 72
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=238.14 Aligned_cols=226 Identities=15% Similarity=0.194 Sum_probs=191.5
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
|.+.|.+++|+|++++|++++ ++.|++|| .+++....+..|...|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~- 184 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM- 184 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE-
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE-
Confidence 677999999999999999986 89999999 677888888899999999999999999999999999999999988755
Q ss_pred eeeccCCCCC---------------eeEEEEecCCCEEEEEeCCcEEEEEccC----------CCCCceeEeCCCCCEEE
Q psy16005 95 KNEFHPIGGP---------------IKDIAWSPDNQRMISIVENGAKVSSLPI----------DYEPSSISLDHEHGLVA 149 (248)
Q Consensus 95 ~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~ 149 (248)
..+..+... +.+++|+|++..++.+.++.+.+|++.. ...+.+++++|++++++
T Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 185 -QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp -EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred -EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 344444454 9999999987655444455579999764 34567899999999999
Q ss_pred EEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC
Q psy16005 150 VGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 150 ~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
+++.|+.|++|| .++....+. +...+.+++|+|++ ++++++.|+.|++||+++++...... .|...|.+++|+|+
T Consensus 264 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQD 341 (425)
T ss_dssp EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTT
T ss_pred EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCC
Confidence 999999999999 444555554 56778999999999 99999999999999999888765554 68889999999999
Q ss_pred CcEEEEEcCCCeEEEEECCC
Q psy16005 227 NEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 227 ~~~l~~~~~d~~i~vw~~~~ 246 (248)
+++|++++.||.|++||+++
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp SSEEEEEETTSCEEEEECHH
T ss_pred CCEEEEEECCCeEEEEECCC
Confidence 99999999999999999864
No 73
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-36 Score=235.15 Aligned_cols=227 Identities=14% Similarity=0.209 Sum_probs=187.5
Q ss_pred cccCCcEEEEeCCCCC-EEEEeC-CcEEEEEec----CCCc------eeeeeec----------CCcceEEEEECcCCcE
Q psy16005 15 TQRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNI----ENPA------ISDIYTE----------HSCAVNVAKYSPSGFY 72 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~----~~~~------~~~~~~~----------~~~~v~~~~~s~~~~~ 72 (248)
.|.+.|.+++|+|+++ +|++++ |+.|++|++ .+++ ....+.. |...|.+++|+|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 3568999999999999 999987 899999999 8877 4444443 6779999999999999
Q ss_pred EEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCC----------C------
Q psy16005 73 IASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDY----------E------ 135 (248)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~----------~------ 135 (248)
|++++.||.|++|| .+++.. ..+..|...|.+++|+|++++|++++.++ +++|++.... .
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALL--NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEE--EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEEeCCCeEEEEe-CCCCee--eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 99999999999999 445433 56778999999999999999999998766 6999985321 1
Q ss_pred ---------CceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 136 ---------PSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 136 ---------~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
+.++.+++++ .+++++.++.|++|| .++.+..+. +...+.+++|+|++++|++++.|+.|++||+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp ------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred ccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 6778888875 588889999999999 344444443 566789999999999999999999999999999
Q ss_pred CCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 204 KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 204 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
++....+. .|...|.+++|+|++ ++++++.|+.|++||++++
T Consensus 279 ~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~ 320 (425)
T 1r5m_A 279 GNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN 320 (425)
T ss_dssp BSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT
T ss_pred CccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC
Confidence 88765554 688999999999999 9999999999999999875
No 74
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-35 Score=259.76 Aligned_cols=229 Identities=13% Similarity=0.177 Sum_probs=199.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.+++|+|+|+++++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce
Confidence 35889999999999999999987 99999999999999999999999999999999999999999999999999999885
Q ss_pred eeeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
+ ..+.+|...|.+++|+| ++..+++++.++ +++|++.. ...+.+++|+|+++.+++++.|+.|++
T Consensus 692 ~--~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 692 V--HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp E--EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred E--EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 5 56778999999999999 455788888776 69999753 356778999999999999999999999
Q ss_pred EE--CCceeeee--------------------------------------------------------cccCCCceEEEc
Q psy16005 160 VE--NGAKVSSL--------------------------------------------------------PIDYEPSSISLD 181 (248)
Q Consensus 160 ~~--~~~~~~~~--------------------------------------------------------~~~~~~~~~~~s 181 (248)
|| .++....+ .+...+.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 99 23222111 233457789999
Q ss_pred CCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 182 HEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 182 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
|+++++++++.|+.|++||+.++....... +|...|.+++|+|++++|++++.||.|++|++.
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 999999999999999999999887765554 799999999999999999999999999999964
No 75
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-37 Score=236.75 Aligned_cols=234 Identities=14% Similarity=0.154 Sum_probs=177.6
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc---eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA---ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 84 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 84 (248)
...+. .|.+.|.+++|+|++++|++++ |+.|++||+.+++ ....+..|...|.+++|+|++++|++++.|+.|++
T Consensus 48 ~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 126 (377)
T 3dwl_C 48 ARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISV 126 (377)
T ss_dssp CCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEE
T ss_pred EEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEE
Confidence 33443 5889999999999999999987 9999999999877 56667789999999999999999999999999999
Q ss_pred EECCCCcee-eeeeccC-CCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc---------------------------CCC
Q psy16005 85 WDTVNKEHI-LKNEFHP-IGGPIKDIAWSPDNQRMISIVENG-AKVSSLP---------------------------IDY 134 (248)
Q Consensus 85 wd~~~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~---------------------------~~~ 134 (248)
||+++++.. ....+.. |...|.+++|+|++++|++++.++ +++|++. +..
T Consensus 127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (377)
T 3dwl_C 127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG 206 (377)
T ss_dssp CCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSS
T ss_pred EEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCc
Confidence 999887631 1244555 899999999999999999999876 6999983 344
Q ss_pred CCceeEeCCCCCEEEEEcCCCeEEEEE--CCce----eeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-
Q psy16005 135 EPSSISLDHEHGLVAVGGADSKISIVE--NGAK----VSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL- 206 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~----~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~- 206 (248)
.+.+++|+|+++++++++.|+.|++|| .++. +..+. +...+.+++|+|++++|++|+.++.+ +|+......
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~ 285 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWA 285 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---C
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceE
Confidence 578899999999999999999999999 3443 34443 45568999999999999999876655 676642110
Q ss_pred --------------------------------------------------CCcccccCCcCeEEEEEcCCC-c---EEEE
Q psy16005 207 --------------------------------------------------SPKAELDHLGPVTDCSFSPSN-E---YLVA 232 (248)
Q Consensus 207 --------------------------------------------------~~~~~~~~~~~v~~~~~s~~~-~---~l~~ 232 (248)
.......|...|+++++.+.. . .|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s 365 (377)
T 3dwl_C 286 HTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTS 365 (377)
T ss_dssp CSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEE
T ss_pred EEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEe
Confidence 000111388999999976654 2 6999
Q ss_pred EcCCCeEEEEEC
Q psy16005 233 SDAHRKVVLYRV 244 (248)
Q Consensus 233 ~~~d~~i~vw~~ 244 (248)
++.||.|++||+
T Consensus 366 ~g~Dg~i~iWdl 377 (377)
T 3dwl_C 366 SGTDGRVVLWTL 377 (377)
T ss_dssp EETTSEEEEECC
T ss_pred ecCCCcEEEecC
Confidence 999999999986
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-36 Score=239.77 Aligned_cols=229 Identities=13% Similarity=0.051 Sum_probs=183.9
Q ss_pred cccCCcEEEEeCCC------CCEEEEeC-CcEEEEEecCCCce-----------eeeeecCCcceEEEEECcCCcEEEEE
Q psy16005 15 TQRGQPIVLGGDPK------GKNFLYTN-GNSVIIRNIENPAI-----------SDIYTEHSCAVNVAKYSPSGFYIASG 76 (248)
Q Consensus 15 ~~~~~v~~~~~s~~------~~~l~~~~-~~~v~v~~~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~~~ 76 (248)
+|.+.|.+++|+|+ +.+||+++ |++|++||+.+++. ...+.+|...|++++|+|++ .|++|
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasg 283 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCG 283 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEE
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEE
Confidence 45788999999997 57899886 99999999986542 23567899999999999864 79999
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEE--EEecCC-CEEEEEeCCc-EEEEEccCC------------CCCceeE
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDI--AWSPDN-QRMISIVENG-AKVSSLPID------------YEPSSIS 140 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~~~-~~i~~~~~~------------~~~~~~~ 140 (248)
+.||+|++||+++++. ....+.+|...|.++ +|+|++ ++|++++.|+ +++|+++.. ..+.+++
T Consensus 284 s~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~ 362 (524)
T 2j04_B 284 FKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV 362 (524)
T ss_dssp ETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEE
T ss_pred eCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceE
Confidence 9999999999987643 224567899999999 578887 8999999887 599998531 1367899
Q ss_pred eCCCCCEEEEEcCCCeEEEEE--CCceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC----------
Q psy16005 141 LDHEHGLVAVGGADSKISIVE--NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS---------- 207 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~---------- 207 (248)
|+|+++.+++++.|+.|++|| .+..+..+ .+...+.+++|+|++++|++|+.|++|++||+..+...
T Consensus 363 fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~ 442 (524)
T 2j04_B 363 YCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQK 442 (524)
T ss_dssp EETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CC
T ss_pred eCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcccee
Confidence 999999999999999999999 33443433 46678999999999999999999999999986321000
Q ss_pred ---------------------------------CcccccCCcCeEEEEEcCCCc---EEEEEcCCCeEEEEECC
Q psy16005 208 ---------------------------------PKAELDHLGPVTDCSFSPSNE---YLVASDAHRKVVLYRVP 245 (248)
Q Consensus 208 ---------------------------------~~~~~~~~~~v~~~~~s~~~~---~l~~~~~d~~i~vw~~~ 245 (248)
.....+|...|.+|+|+|+++ .+++|+.||.|+||+++
T Consensus 443 ~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 443 SLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred eeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 001124778999999999964 99999999999999985
No 77
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.4e-36 Score=232.06 Aligned_cols=225 Identities=11% Similarity=0.143 Sum_probs=179.6
Q ss_pred cccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCCceeeeeec---CCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENPAISDIYTE---HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|.+.|.+++|+| ++++|++++ |+.|++||+.+ +....+.. |...|.+++|+|++++|++++.||.|++||++
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~- 193 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD- 193 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-
Confidence 5889999999999 678888886 99999999986 44444543 44789999999999999999999999999994
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-EEEEEccC-------------CCCCceeEeCC-CCCEEEEEcC
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG-AKVSSLPI-------------DYEPSSISLDH-EHGLVAVGGA 153 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~-~~i~~~~~-------------~~~~~~~~~~~-~~~~~~~~~~ 153 (248)
++. ...+..|...|.+++|+|+++ ++++++.++ +++|+++. ...+.+++|+| +++++++++.
T Consensus 194 ~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 194 GHE--IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp SCE--EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES
T ss_pred CCE--EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC
Confidence 443 356678999999999999999 899998876 59999864 34567899999 9999999999
Q ss_pred CCeEEEEE--CCceeeeecc--------cC----------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc
Q psy16005 154 DSKISIVE--NGAKVSSLPI--------DY----------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD 213 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~--------~~----------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 213 (248)
|+.|++|| .++....+.. .. ....++++|++++ +++.|+.|++||+.+++.+..+...
T Consensus 272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence 99999999 3333333221 11 1223455555555 6678999999999999886665522
Q ss_pred -CCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 214 -HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 214 -~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
|...+..++|+|++++|++++ |+.|++||+++
T Consensus 350 ~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 350 NAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 567788889999999999997 99999999975
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-34 Score=230.56 Aligned_cols=226 Identities=17% Similarity=0.208 Sum_probs=191.4
Q ss_pred cccCC-cEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 15 TQRGQ-PIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 15 ~~~~~-v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
+|.+. +.++.+ +++++++++ |+.|++||+.+++....+.+|.+.|.+++|+|++ .|++|+.||+|++||+++++.
T Consensus 119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~ 195 (464)
T 3v7d_B 119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC 195 (464)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE
T ss_pred CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE
Confidence 35555 566666 567888886 9999999999999999999999999999999987 899999999999999999875
Q ss_pred eeeeeccCCCCCeeEEEEe--cCCCEEEEEeCCc-EEEEEccCCCCC-------------------------------ce
Q psy16005 93 ILKNEFHPIGGPIKDIAWS--PDNQRMISIVENG-AKVSSLPIDYEP-------------------------------SS 138 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~~-~~i~~~~~~~~~-------------------------------~~ 138 (248)
+ ..+.+|...|.+++|+ ++++++++++.++ +++|+++..... ..
T Consensus 196 ~--~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 196 T--HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp E--EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred E--EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 4 5677899999999998 4778999999777 599998654321 12
Q ss_pred eEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCC
Q psy16005 139 ISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 215 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 215 (248)
.+++++++++++++.|+.|++|| .++.+..+. +...+.+++|+|+++++++|+.||.|++||+++++....+. +|.
T Consensus 274 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~ 352 (464)
T 3v7d_B 274 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHT 352 (464)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCC
Confidence 34567789999999999999999 455566655 56678999999999999999999999999999988766554 799
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..|.+++|+ +++|++++.||.|++||+.+++
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence 999999997 5799999999999999998753
No 79
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.9e-35 Score=232.13 Aligned_cols=233 Identities=15% Similarity=0.218 Sum_probs=192.3
Q ss_pred ccccCCcEEEEeCCC-CCEEEEeC-CcEEEEEecCC----------CceeeeeecCCcceEEEEECcCCc-EEEEEccCC
Q psy16005 14 RTQRGQPIVLGGDPK-GKNFLYTN-GNSVIIRNIEN----------PAISDIYTEHSCAVNVAKYSPSGF-YIASGDISG 80 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg 80 (248)
..|.+.|++++|+|+ +.+|++++ +|.|++|++.+ .+....+.+|...|.+++|+|++. +|++|+.||
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 458899999999997 67888876 89999999986 566777889999999999999988 999999999
Q ss_pred eEEEEECCCCcee-----eeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEccCC-------------CCCceeE
Q psy16005 81 KVRIWDTVNKEHI-----LKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLPID-------------YEPSSIS 140 (248)
Q Consensus 81 ~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~~-------------~~~~~~~ 140 (248)
.|++||+..+... ....+..|...|.+++|+| ++..|++++.++ +++|+++.. ..+.+++
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence 9999999874321 1245668899999999999 677888888766 599998643 3457889
Q ss_pred eCCCCC-EEEEEcCCCeEEEEEC---Cceeeeec-ccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCC--------
Q psy16005 141 LDHEHG-LVAVGGADSKISIVEN---GAKVSSLP-IDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSL-------- 206 (248)
Q Consensus 141 ~~~~~~-~~~~~~~~~~i~~~~~---~~~~~~~~-~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~-------- 206 (248)
|+|++. ++++++.|+.|++||. ...+..+. +...+.+++|+|+++ +|++++.|+.|++||+.....
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 364 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 364 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHH
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccc
Confidence 999887 7889999999999993 34455554 667799999999985 799999999999999987321
Q ss_pred -----CCcccccCCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCC
Q psy16005 207 -----SPKAELDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 207 -----~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~ 246 (248)
......+|...|++++|+|+++ +|++++.||.|++|++.+
T Consensus 365 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 365 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 1112236888999999999999 899999999999999864
No 80
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-34 Score=227.99 Aligned_cols=227 Identities=12% Similarity=0.088 Sum_probs=186.8
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc---eeeeeec-------------------------------------
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA---ISDIYTE------------------------------------- 56 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~---~~~~~~~------------------------------------- 56 (248)
..++.+++|+|+|++|+++.++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 357889999999998888889999999999988 5544442
Q ss_pred -----------------CCcceEEEEECcCCcEE-EEEccCCeEEEEECC--CCceeeeeeccCCCCCeeEEEEecCCCE
Q psy16005 57 -----------------HSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTV--NKEHILKNEFHPIGGPIKDIAWSPDNQR 116 (248)
Q Consensus 57 -----------------~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (248)
|.+.|.+++|+|++++| ++++.||.|++||+. +++.+.......|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33369999999999996 899999999999998 7765543333467789999999999999
Q ss_pred EEEEeCCc-EEEEEccC--------------CCCCceeEeCCC---CCEEEEEcCCCeEEEEE--CCceeeee--cccCC
Q psy16005 117 MISIVENG-AKVSSLPI--------------DYEPSSISLDHE---HGLVAVGGADSKISIVE--NGAKVSSL--PIDYE 174 (248)
Q Consensus 117 l~~~~~~~-~~i~~~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~--~~~~~~~~--~~~~~ 174 (248)
|++++.++ +.+|++.. ...+.+++|+|+ ++++++++.|+.|++|| .++.+..+ .+...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 99999877 47887632 234678899999 99999999999999999 45555543 36677
Q ss_pred CceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc------------------------cCCcCeEEEEEcCCCcEE
Q psy16005 175 PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL------------------------DHLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------------------------~~~~~v~~~~~s~~~~~l 230 (248)
+.+++|+ ++++|++++.|+.|++||+++++....+.. .....|.+++|+|++++|
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 8999999 999999999999999999999876544321 223568999999999999
Q ss_pred EEEc-CCCeEEEEEC
Q psy16005 231 VASD-AHRKVVLYRV 244 (248)
Q Consensus 231 ~~~~-~d~~i~vw~~ 244 (248)
++++ .|+.|++|++
T Consensus 323 ~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 323 AFFVEATKCIIILEM 337 (450)
T ss_dssp EEEETTCSEEEEEEE
T ss_pred EEEECCCCeEEEEEe
Confidence 9998 8999999999
No 81
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.6e-35 Score=228.86 Aligned_cols=208 Identities=15% Similarity=0.246 Sum_probs=174.2
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEE
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM 117 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 117 (248)
..+..|+.......+.+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.. ..+..|...|.+++|+|++++|
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT--HAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE--EEEECCCTTCCCCEECTTSSEE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--eEEecCCCCEEEEEECCCCCEE
Confidence 34456777777778889999999999999999999999999999999999988754 5677889999999999999999
Q ss_pred EEEeCCcE-EEEEccC-----------------CCCCceeEeCCC-CCEEEEEcCCCeEEEEE--CCceeeee------c
Q psy16005 118 ISIVENGA-KVSSLPI-----------------DYEPSSISLDHE-HGLVAVGGADSKISIVE--NGAKVSSL------P 170 (248)
Q Consensus 118 ~~~~~~~~-~i~~~~~-----------------~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~--~~~~~~~~------~ 170 (248)
++++.++. ++|++.. ...+..+.+.|+ +..+++++.|+.|++|| .++.+..+ .
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 99998774 9999752 233566778876 45799999999999999 45555544 2
Q ss_pred ccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 171 IDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 171 ~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+...+.+++++| ++.+|++|+.|+.|++||++..........+|.+.|.+++|+|++++|++++.|++|++||++++
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 445678899977 88999999999999999998554333444489999999999999999999999999999999875
No 82
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=217.84 Aligned_cols=223 Identities=12% Similarity=0.113 Sum_probs=189.7
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC---ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP---AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
.|.+.|.+++|+|+++++++++ |+.+++|++... +....+..|...|.+++| +++++++++.||.|++|| .+
T Consensus 57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~ 132 (313)
T 3odt_A 57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG 132 (313)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT
T ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC
Confidence 4788999999999999999987 999999998754 456677889999999999 577999999999999999 33
Q ss_pred ceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEcc---------CCCCCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLP---------IDYEPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
+ ....+..|...+.+++|.| +++.+++++.++ +++|+.. ....+.+++++|++. +++++.++.|++
T Consensus 133 ~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i 209 (313)
T 3odt_A 133 S--LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKL 209 (313)
T ss_dssp E--EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEE
T ss_pred c--EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEE
Confidence 3 2356677899999999998 899999998776 5899853 445678899999998 899999999999
Q ss_pred EE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 160 VE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 160 ~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
|| .++.+..+. +...+.+++|+|++ .|++++.||.|++||+++++....+. .|...|.+++|+|+++ +++++.|
T Consensus 210 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 210 VDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSC-EEEEETT
T ss_pred EECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCC-EEEEeCC
Confidence 99 456666665 56778999999999 58899999999999999998766554 6888999999999998 6678899
Q ss_pred CeEEEEECCCC
Q psy16005 237 RKVVLYRVPDF 247 (248)
Q Consensus 237 ~~i~vw~~~~~ 247 (248)
|.|++|+++++
T Consensus 287 g~i~iw~~~~~ 297 (313)
T 3odt_A 287 NLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEESCGG
T ss_pred CcEEEEeCCCC
Confidence 99999999865
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.6e-34 Score=224.82 Aligned_cols=230 Identities=14% Similarity=0.211 Sum_probs=187.2
Q ss_pred CcEEEEeCCCCCEEEE-eC-CcEEEEEecCCC----ceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCc
Q psy16005 19 QPIVLGGDPKGKNFLY-TN-GNSVIIRNIENP----AISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~-~~-~~~v~v~~~~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
....++++|+...+++ ++ +|.|++|++... +....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3456888988776664 33 899999998654 23445778999999999999 99999999999999999998874
Q ss_pred e-----eeeeeccCCCCCeeEEEEecCC-CEEEEEeCCc-EEEEEcc------------CCCCCceeEeCCCCCEEEEEc
Q psy16005 92 H-----ILKNEFHPIGGPIKDIAWSPDN-QRMISIVENG-AKVSSLP------------IDYEPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 92 ~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~-~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~ 152 (248)
. .....+.+|...|.+++|+|++ +.|++++.++ +++|++. +...+.+++|+|+++++++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 2 1335677899999999999998 6899988776 6999964 234567899999999999999
Q ss_pred CCCeEEEEE--CCceeeee-c-ccCC-CceEEEcCCCCEEEEE---cCCCcEEEEEcCCCCCC-CcccccCCcCeEEEEE
Q psy16005 153 ADSKISIVE--NGAKVSSL-P-IDYE-PSSISLDHEHGLVAVG---GADSKVHIYELNNKSLS-PKAELDHLGPVTDCSF 223 (248)
Q Consensus 153 ~~~~i~~~~--~~~~~~~~-~-~~~~-~~~~~~s~~~~~l~~~---~~d~~v~i~d~~~~~~~-~~~~~~~~~~v~~~~~ 223 (248)
.|+.|++|| .++.+..+ . +... +.+++|+|++++|++| +.|+.|++||+++.+.. ......|...+.+++|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 999999999 45556655 3 3333 7899999999999999 78999999999987653 2333357788999999
Q ss_pred cCCCcEEEE-EcCCCeEEEEECCCCC
Q psy16005 224 SPSNEYLVA-SDAHRKVVLYRVPDFE 248 (248)
Q Consensus 224 s~~~~~l~~-~~~d~~i~vw~~~~~~ 248 (248)
+|++++|++ ++.|+.|++||+.+++
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSST
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 999999865 5579999999998764
No 84
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-34 Score=221.38 Aligned_cols=196 Identities=15% Similarity=0.204 Sum_probs=170.1
Q ss_pred ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EE
Q psy16005 49 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KV 127 (248)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i 127 (248)
+....+.+|.+.|.+++|+|++++|++|+.||+|++||..+++.. ..+..|...|.+++|+|+++.+++++.++. ++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~--~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE--HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc--eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 456678899999999999999999999999999999999888754 455667889999999999999999998775 89
Q ss_pred EEccC----------------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcC--CCCE
Q psy16005 128 SSLPI----------------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDH--EHGL 186 (248)
Q Consensus 128 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~--~~~~ 186 (248)
|++.. ...+..+.|+|++..+++++.|+.|++|| .++.+..+. +...+.+++++| ++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 98753 23457889999999999999999999999 566666665 556688899987 5789
Q ss_pred EEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 187 VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
|++|+.||.|++||+++++....+. .|...|.+++|+|++++|++++.|++|++||++++
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999999999988765544 79999999999999999999999999999999764
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-33 Score=220.52 Aligned_cols=222 Identities=16% Similarity=0.217 Sum_probs=184.6
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeec-CCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
.+.+++|++ +.+++++.|+.|++|++.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.+++.+ ..
T Consensus 95 ~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~ 171 (401)
T 4aez_A 95 YLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL--RT 171 (401)
T ss_dssp TCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EE
T ss_pred eEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE--EE
Confidence 355678876 3455555699999999999988777765 7889999999999999999999999999999988754 56
Q ss_pred ccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CC
Q psy16005 98 FHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-----------DYEPSSISLDHEHGLVAVGGADSKISIVE--NG 163 (248)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~ 163 (248)
+..|...|.+++| +++.+++++.++ +++|+++. ...+.+++|+|+++++++++.|+.|++|| .+
T Consensus 172 ~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 249 (401)
T 4aez_A 172 MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS 249 (401)
T ss_dssp ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS
T ss_pred ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC
Confidence 6789999999999 457899998877 49999862 34578899999999999999999999999 34
Q ss_pred ceeeee-cccCCCceEEEcCCCC-EEEEEc--CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE--EcCCC
Q psy16005 164 AKVSSL-PIDYEPSSISLDHEHG-LVAVGG--ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA--SDAHR 237 (248)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~s~~~~-~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~d~ 237 (248)
+....+ .+...+.+++|+|++. ++++++ .|+.|++||+++++..... .+...|.+++|+|+++++++ |+.||
T Consensus 250 ~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~dg 327 (401)
T 4aez_A 250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV--DAGSQVTSLIWSPHSKEIMSTHGFPDN 327 (401)
T ss_dssp SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE--eCCCcEEEEEECCCCCeEEEEeecCCC
Confidence 455555 3667789999999775 666654 7999999999998875544 46778999999999999999 44899
Q ss_pred eEEEEECCCC
Q psy16005 238 KVVLYRVPDF 247 (248)
Q Consensus 238 ~i~vw~~~~~ 247 (248)
.|++|++.++
T Consensus 328 ~i~v~~~~~~ 337 (401)
T 4aez_A 328 NLSIWSYSSS 337 (401)
T ss_dssp EEEEEEEETT
T ss_pred cEEEEecCCc
Confidence 9999998764
No 86
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.1e-34 Score=219.16 Aligned_cols=225 Identities=13% Similarity=0.145 Sum_probs=178.8
Q ss_pred ccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~ 92 (248)
..|...|.+++|+|||++|++|++..+++|++.+++....... ..+..+++.++++.+ ++++.|++|++||..+++.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 4588999999999999999999877789999988766554332 247788888888777 5678889999999999886
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC-CCCc-------eeEeCCCCCEEEE--EcCCCeEEEEEC
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID-YEPS-------SISLDHEHGLVAV--GGADSKISIVEN 162 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~-~~~~-------~~~~~~~~~~~~~--~~~~~~i~~~~~ 162 (248)
+.. +. +...|.+++|+++ .++++.++.+++|++... .... .+++++ ..+++ ++.+|.|++||.
T Consensus 94 ~~~--~~-~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 94 VSR--IK-VDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp EEE--EE-CSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred EEE--EE-CCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence 543 33 5678999999875 466677888999998765 3322 234555 55555 689999999994
Q ss_pred Cce------------------eeee-cccCCCceEEEcCCCCEEEEEcCCCc-EEEEEcCCCCCCCccccc-CCcCeEEE
Q psy16005 163 GAK------------------VSSL-PIDYEPSSISLDHEHGLVAVGGADSK-VHIYELNNKSLSPKAELD-HLGPVTDC 221 (248)
Q Consensus 163 ~~~------------------~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~-v~i~d~~~~~~~~~~~~~-~~~~v~~~ 221 (248)
... +..+ .+...+.+++|+|+|++|++|+.|++ |++||+++++.+..+..+ |...|.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~ 246 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM 246 (355)
T ss_dssp CC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEE
T ss_pred CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEE
Confidence 321 3333 35677899999999999999999998 999999999887666544 89999999
Q ss_pred EEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 222 SFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 222 ~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+|+|++++|++++.|++|++||++++
T Consensus 247 ~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 247 KWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EECCCCCEEEEEECCCEEEEEEccCC
Confidence 99999999999999999999999754
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.3e-35 Score=230.51 Aligned_cols=199 Identities=17% Similarity=0.307 Sum_probs=167.8
Q ss_pred eeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EE
Q psy16005 50 ISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AK 126 (248)
Q Consensus 50 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~ 126 (248)
.......|...|++++|+| ++++||+|+.||.|+|||+.+++......+.+|.+.|.+++|+| ++++|++++.|+ ++
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3445567888999999999 56899999999999999998887655567788999999999998 688999999877 69
Q ss_pred EEEccCC------------CCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeec-ccCCCceEEEcCCCC-EEEEEc
Q psy16005 127 VSSLPID------------YEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLP-IDYEPSSISLDHEHG-LVAVGG 191 (248)
Q Consensus 127 i~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~~~~~~~s~~~~-~l~~~~ 191 (248)
+|+++.. ..+.+++++|+++++++|+.|+.|++|| .++.+..+. +...+.+++|+|++. +|++|+
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec
Confidence 9998532 2356789999999999999999999999 445554444 466789999999886 788999
Q ss_pred CCCcEEEEEcCCCCCCCcc--cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 192 ADSKVHIYELNNKSLSPKA--ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.|+.|++||+++.+....+ ..+|...|++++|+|+|++|++++.||.|++||+.+++
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 9999999999987654433 23689999999999999999999999999999998753
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=228.92 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=181.5
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecC---CCceeeeeec------------CCcceEEEE--ECcCCcEEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE---NPAISDIYTE------------HSCAVNVAK--YSPSGFYIASG 76 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~---~~~~~~~~~~------------~~~~v~~~~--~s~~~~~l~~~ 76 (248)
.|.+.|.+++|+|++++|++++ |+.|++||+. +++....+.. +...+.++. +++++++|+++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 5789999999999999999987 9999999995 4544443322 445566666 56789999999
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-----------CCCCceeEe---
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-----------DYEPSSISL--- 141 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~--- 141 (248)
+.||.|++||+++++.+.......|...|.+++|+|++++|++++.++ +++|+++. ...+.++++
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 999999999999988664333333789999999999999999999888 69999753 234567744
Q ss_pred -CCCCCEEEEEcCCCeEEEEE--CCceeeeec---------------------------ccCCCceEEEcCCCCEEEEEc
Q psy16005 142 -DHEHGLVAVGGADSKISIVE--NGAKVSSLP---------------------------IDYEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 142 -~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~---------------------------~~~~~~~~~~s~~~~~l~~~~ 191 (248)
++++.++++++.|+.|++|| .++.+..+. +...+.+++|+ ++++|++|+
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~ 347 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE 347 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence 45688999999999999999 345444443 23347788999 778999999
Q ss_pred CCCcEEEEEcCCCCCCCcccc------------------------------------cCCcCeEEEEEcCC--CcEEEEE
Q psy16005 192 ADSKVHIYELNNKSLSPKAEL------------------------------------DHLGPVTDCSFSPS--NEYLVAS 233 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~~~------------------------------------~~~~~v~~~~~s~~--~~~l~~~ 233 (248)
.|+.|++||+.+++....+.. .|...|++++|+++ +.+|+++
T Consensus 348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~ 427 (437)
T 3gre_A 348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC 427 (437)
T ss_dssp GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence 999999999998876544331 18899999999998 7899999
Q ss_pred cCCCeEEEEE
Q psy16005 234 DAHRKVVLYR 243 (248)
Q Consensus 234 ~~d~~i~vw~ 243 (248)
+.||.|+||+
T Consensus 428 ~~dG~I~iw~ 437 (437)
T 3gre_A 428 DNSGLIGIFQ 437 (437)
T ss_dssp ETTSCEEEEC
T ss_pred cCCceEEEeC
Confidence 9999999995
No 89
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.3e-34 Score=214.91 Aligned_cols=195 Identities=18% Similarity=0.249 Sum_probs=161.2
Q ss_pred eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EEEE
Q psy16005 52 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AKVS 128 (248)
Q Consensus 52 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~i~ 128 (248)
..+.+|.+.|.+++|+|+|++|++|+.|++|++||+..+.......+.+|..+|.+++|++ ++++|++++.|+ +++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 3467899999999999999999999999999999997653334467889999999999986 489999999887 5999
Q ss_pred EccCC------------CCCceeEeCCC--CCEEEEEcCCCeEEEEECCc-----eeeeecccCCCceEEEcCC------
Q psy16005 129 SLPID------------YEPSSISLDHE--HGLVAVGGADSKISIVENGA-----KVSSLPIDYEPSSISLDHE------ 183 (248)
Q Consensus 129 ~~~~~------------~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~s~~------ 183 (248)
++... ..+.+++|+|+ +.++++++.|+.|++||... ......+...+.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 98632 34678899997 88999999999999999332 1122245667899999997
Q ss_pred -------CCEEEEEcCCCcEEEEEcCCCCCC---CcccccCCcCeEEEEEcCCC---cEEEEEcCCCeEEEEECCC
Q psy16005 184 -------HGLVAVGGADSKVHIYELNNKSLS---PKAELDHLGPVTDCSFSPSN---EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 184 -------~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~i~vw~~~~ 246 (248)
+++|++|+.|+.|++||+++++.. .....+|...|.+++|+|++ ++|++++.|++|++||+++
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 579999999999999999876621 12233799999999999995 8999999999999999875
No 90
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.7e-34 Score=249.50 Aligned_cols=235 Identities=13% Similarity=0.198 Sum_probs=189.3
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECc--CCcEEEEEccCCeEEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIW 85 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw 85 (248)
+..+. .|.+.|.+++|+|+|+++++++ |+.|++||+.+++....+.+|...|.+++|+| ++.++++|+.||.|++|
T Consensus 650 ~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 650 LLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 33443 5889999999999999999987 89999999999999999999999999999999 55689999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------------------------------
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-------------------------------- 132 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-------------------------------- 132 (248)
|+.+++.. ..+.+|...|.+++|+|+++++++++.++ +++|++..
T Consensus 729 d~~~~~~~--~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 729 DLNQKECR--NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp ETTSSSEE--EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred ECCCcchh--heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 99998854 56778999999999999999999999877 58998632
Q ss_pred ---------------------------------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCc
Q psy16005 133 ---------------------------------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPS 176 (248)
Q Consensus 133 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~ 176 (248)
...+.+++++|+++.+++++.++.+++|+ .+.....+. +...+.
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence 12345667788888888888888888888 334444433 344567
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcC------------------------------------------------------
Q psy16005 177 SISLDHEHGLVAVGGADSKVHIYELN------------------------------------------------------ 202 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~~v~i~d~~------------------------------------------------------ 202 (248)
+++|+|++++|++++.|+.|++||+.
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 77777777777777777777777643
Q ss_pred -------------------------CCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 203 -------------------------NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 203 -------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+++.... ..+|...|++++|+|++++|++++.||.|++||+.++
T Consensus 967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS-GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp EEECTTSSEEEEEETTSCCEEEETTTTSCEEE-CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcCCCceeee-cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 2222222 2268889999999999999999999999999999875
No 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=226.56 Aligned_cols=225 Identities=10% Similarity=0.178 Sum_probs=179.3
Q ss_pred CCcEEEEeCCCC--CEEEEeC-CcEEEEEecCCCcee---------------------------------------ee-e
Q psy16005 18 GQPIVLGGDPKG--KNFLYTN-GNSVIIRNIENPAIS---------------------------------------DI-Y 54 (248)
Q Consensus 18 ~~v~~~~~s~~~--~~l~~~~-~~~v~v~~~~~~~~~---------------------------------------~~-~ 54 (248)
+.|.+++|+|++ ..|++++ |+.|++|++.+++.. .. .
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 889999999998 6777776 999999998764431 12 3
Q ss_pred ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee------eccCCCCCeeEEEEecCC-CEEEEEeCCc-EE
Q psy16005 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN------EFHPIGGPIKDIAWSPDN-QRMISIVENG-AK 126 (248)
Q Consensus 55 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~v~~~~~~~~~-~~l~~~~~~~-~~ 126 (248)
.+|...|.+++|+|++++|++| .||.|++||++........ .+..|...|.+++|+|++ ++|++++.++ ++
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence 5799999999999999999999 7999999999854322211 366899999999999998 9999999877 69
Q ss_pred EEEccCCC--------------------------CCceeEeCCCCCEEEEEcCCCeEEEEEC---CceeeeecccCCC--
Q psy16005 127 VSSLPIDY--------------------------EPSSISLDHEHGLVAVGGADSKISIVEN---GAKVSSLPIDYEP-- 175 (248)
Q Consensus 127 i~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~-- 175 (248)
+|+++... .+.+++|+|+++++++++. +.|++||. ++.+..+..+..+
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence 99976432 5778999999999999999 99999993 4455555543322
Q ss_pred --------------ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc-------------------------------
Q psy16005 176 --------------SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA------------------------------- 210 (248)
Q Consensus 176 --------------~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~------------------------------- 210 (248)
..++|+|++++|++|+.||.|++||+.+++.....
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVD 411 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccc
Confidence 23999999999999999999999999887643100
Q ss_pred cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 211 ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 211 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
...+...|..++|+|++++||+++.++ +++|.-+
T Consensus 412 ~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 412 SLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp GCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 113456789999999999999998765 7777643
No 92
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.7e-34 Score=239.66 Aligned_cols=231 Identities=14% Similarity=0.103 Sum_probs=199.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|.+.|.+++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.++..
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~- 131 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA- 131 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-
Confidence 4888999999999999999987 89999999999999999999999999999999999999999999999999987743
Q ss_pred eeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCC--CCCEEEEEcCCCeEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLPID-----------YEPSSISLDH--EHGLVAVGGADSKIS 158 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~~i~ 158 (248)
....+.+|...|.+++|+| +++.+++++.++ +++|++... ..+..++|+| ++.++++++.|+.|+
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 2356678899999999999 889999999877 599997532 5677889998 999999999999999
Q ss_pred EEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE-EEEEc
Q psy16005 159 IVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY-LVASD 234 (248)
Q Consensus 159 ~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~ 234 (248)
+|| .++.+..+. +...+.+++|+|+++++++++.||.|++||+.+++...... .|...+.+++|+|+++. +++++
T Consensus 212 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ 290 (814)
T 3mkq_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASG 290 (814)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC-CSSSSEEEEEECTTCGGGEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCcEEEEEEccCCCceEEEEE
Confidence 999 455566555 55678999999999999999999999999999988765554 57789999999999873 24455
Q ss_pred CCCeEEEEECCCC
Q psy16005 235 AHRKVVLYRVPDF 247 (248)
Q Consensus 235 ~d~~i~vw~~~~~ 247 (248)
.++.+.+|++...
T Consensus 291 ~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 291 FDNGFTVLSLGND 303 (814)
T ss_dssp ETTEEEEEECSCC
T ss_pred eCCCEEEEEcCCC
Confidence 5778899987653
No 93
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.5e-33 Score=222.95 Aligned_cols=231 Identities=16% Similarity=0.198 Sum_probs=192.8
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEEC--cCCcEEEEEccCCeEEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYS--PSGFYIASGDISGKVRIW 85 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iw 85 (248)
+..+. +|.+.|.+++|+|++ .+++++ |+.|++||+.+++....+.+|...|.+++|+ ++++++++++.||.|++|
T Consensus 155 ~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 155 LLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp EEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred EEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 33443 588999999999998 666665 9999999999999999999999999999998 478999999999999999
Q ss_pred ECCCCceee---------------------eeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------C
Q psy16005 86 DTVNKEHIL---------------------KNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------D 133 (248)
Q Consensus 86 d~~~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~ 133 (248)
|++++.... ...+.+|...+.++ +++++++++++.++ +++|++.. .
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 998765321 23456777888776 67889999999776 59999753 4
Q ss_pred CCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc
Q psy16005 134 YEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 210 (248)
..+.+++++|+++.+++++.|+.|++|| .++.+..+. +...+.+++++ +.+|++++.||.|++||+++++.....
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY 388 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee
Confidence 5577899999999999999999999999 566676665 45667888887 579999999999999999987654333
Q ss_pred cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 211 ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 211 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+...+..++|+|+++++++++ ||.|++||+++++
T Consensus 389 --~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 389 --HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp --ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred --cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 4667788899999999999998 8999999999875
No 94
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5e-33 Score=228.10 Aligned_cols=229 Identities=18% Similarity=0.173 Sum_probs=181.0
Q ss_pred cccC---CcEEEEeCCC-CCEEEEeC-CcEEEEEecCCCceeeee-e---cCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 15 TQRG---QPIVLGGDPK-GKNFLYTN-GNSVIIRNIENPAISDIY-T---EHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 15 ~~~~---~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.|.+ .|.+++|+|+ +++|++++ |+.|++||+.+++....+ . .|...|.+++|+ ++++|++++.||.|++|
T Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~w 279 (615)
T 1pgu_A 201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVW 279 (615)
T ss_dssp SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEE
T ss_pred ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEE
Confidence 3666 8999999999 99999886 999999999999998888 6 899999999999 99999999999999999
Q ss_pred ECCCCceeeee-------------------------------------------eccCCCCCe-----------------
Q psy16005 86 DTVNKEHILKN-------------------------------------------EFHPIGGPI----------------- 105 (248)
Q Consensus 86 d~~~~~~~~~~-------------------------------------------~~~~~~~~v----------------- 105 (248)
|+++++.+... .+.+|...|
T Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i 359 (615)
T 1pgu_A 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRI 359 (615)
T ss_dssp ETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCE
T ss_pred ECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeE
Confidence 99866532211 122233333
Q ss_pred ----------------eEEEEecCCC------------------------------------------------------
Q psy16005 106 ----------------KDIAWSPDNQ------------------------------------------------------ 115 (248)
Q Consensus 106 ----------------~~~~~~~~~~------------------------------------------------------ 115 (248)
.+++| ++++
T Consensus 360 ~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 438 (615)
T 1pgu_A 360 MEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 438 (615)
T ss_dssp EETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCc
Confidence 33333 1133
Q ss_pred -------------------EEEEEeC-Cc-EEEEEcc-----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE--
Q psy16005 116 -------------------RMISIVE-NG-AKVSSLP-----------IDYEPSSISLDHEHGLVAVGGADSKISIVE-- 161 (248)
Q Consensus 116 -------------------~l~~~~~-~~-~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 161 (248)
++++++. ++ +++|++. ....+.+++++|+++++++++.|+.|++||
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 518 (615)
T 1pgu_A 439 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ 518 (615)
T ss_dssp EEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC
Confidence 3333333 33 4666653 234567899999999999999999999999
Q ss_pred CCceeeeec--ccCCCceEEEcC----------CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE
Q psy16005 162 NGAKVSSLP--IDYEPSSISLDH----------EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY 229 (248)
Q Consensus 162 ~~~~~~~~~--~~~~~~~~~~s~----------~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 229 (248)
.++.+..+. +...+.+++|+| ++++|++++.||.|++||+.++........+|...|++++|+|+++
T Consensus 519 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~- 597 (615)
T 1pgu_A 519 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST- 597 (615)
T ss_dssp TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-
T ss_pred CCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-
Confidence 556666655 667799999999 9999999999999999999987433333447999999999999999
Q ss_pred EEEEcCCCeEEEEECCC
Q psy16005 230 LVASDAHRKVVLYRVPD 246 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~~ 246 (248)
|++++.||.|++|++++
T Consensus 598 l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 598 LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTSCEEEEEEC-
T ss_pred eEEecCCceEEEEeeec
Confidence 99999999999999975
No 95
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.5e-33 Score=216.47 Aligned_cols=186 Identities=15% Similarity=0.110 Sum_probs=156.1
Q ss_pred cCCcEEEEeCCCCCEEEEe--C-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 17 RGQPIVLGGDPKGKNFLYT--N-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~--~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
...+.+++|||||++++++ + |+.|++||+.+++....+ .|...|.+++|+|||++|++++.+ .+.+|+..+++..
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~ 210 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI 210 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcce
Confidence 3457899999999998754 3 799999999999988877 477889999999999999999855 5677777777766
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-----EEEEEcc--------------CCCCCceeEeCCCCCEEEEEcCC
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-----AKVSSLP--------------IDYEPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----~~i~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 154 (248)
.......|...+.+++|+|+++.+++++.++ +..|++. ....+.+++|+|++++|++|+.|
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 5566677889999999999999999988654 3556643 23457899999999999999999
Q ss_pred CeEEEEE--CCceeeee-c-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC
Q psy16005 155 SKISIVE--NGAKVSSL-P-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 155 ~~i~~~~--~~~~~~~~-~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
+.|++|| +++.+..+ . |...|++++|+|||++|++|+.|++|+|||+...
T Consensus 291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999 56666664 3 6778999999999999999999999999999754
No 96
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-33 Score=237.12 Aligned_cols=226 Identities=12% Similarity=0.122 Sum_probs=182.8
Q ss_pred cccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 13 PRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
..+|.+.|.+++|+|++++||+|+ |+.|++|+..+.+....+ .|...|.+++|+| +++|++++.|++|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 346889999999999999999997 999999998877665544 5788999999999 8899999999999999999988
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC---------------------CCCceeEeCCC-CCEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID---------------------YEPSSISLDHE-HGLV 148 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~---------------------~~~~~~~~~~~-~~~~ 148 (248)
.+.. +. |...|.+++|+|+++++++++.++ +++|+++.. ..+.+++|+|+ +..+
T Consensus 91 ~~~~--~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 91 VLTT--VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp EEEE--EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred EEEE--Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 6533 33 668899999999999999999877 599997532 35789999996 4789
Q ss_pred EEEcCCCeEEEEE--CCceeeeeccc-------------------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 149 AVGGADSKISIVE--NGAKVSSLPID-------------------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 149 ~~~~~~~~i~~~~--~~~~~~~~~~~-------------------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
++++.|+.+ +|| .++.+..+..+ ..+.+++|+|+|++|++|+.|+.|++||+++++.+
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 999999999 999 44555555433 45899999999999999999999999999988754
Q ss_pred Cc--cc--c-------------cCCcCeEEEEEc----CCC-cEEEEEcCC-----CeEEEEEC
Q psy16005 208 PK--AE--L-------------DHLGPVTDCSFS----PSN-EYLVASDAH-----RKVVLYRV 244 (248)
Q Consensus 208 ~~--~~--~-------------~~~~~v~~~~~s----~~~-~~l~~~~~d-----~~i~vw~~ 244 (248)
.. +. . .|...|.+++|+ |++ ..|++++.| ..+.+|++
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 32 10 0 134579999995 554 456777555 37888884
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.3e-32 Score=215.00 Aligned_cols=223 Identities=14% Similarity=0.263 Sum_probs=182.3
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee--cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (248)
-.+.++||++ +.|++|.|++|+|||..+++....+. +|...|++++|+|+|++|++|+.||.|++||+++++.+ .
T Consensus 107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~--~ 183 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--R 183 (420)
T ss_dssp TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--E
T ss_pred cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--E
Confidence 3567999976 58888889999999999998877665 67788999999999999999999999999999998855 5
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC-----------CCCCceeEeCCCCCEEEEEcCCCeEEEEECC-
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI-----------DYEPSSISLDHEHGLVAVGGADSKISIVENG- 163 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 163 (248)
.+.+|...+.++++ ++..+++++.++. .+|+... ...+..+.+.|+++++++++.|+.+++|+..
T Consensus 184 ~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 67789999988877 4678999998875 8888653 3456678899999999999999999999932
Q ss_pred -c----e-eeeecccCCCceEEEcCCCC-EEEE--EcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 164 -A----K-VSSLPIDYEPSSISLDHEHG-LVAV--GGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 164 -~----~-~~~~~~~~~~~~~~~s~~~~-~l~~--~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
+ . .....+...+.+++|+|++. .+++ |+.|+.|++||+.+++...... +...+.++.|+|+++.+++++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEE
Confidence 2 1 12234566789999999665 5554 4579999999999988765443 456799999999999888764
Q ss_pred --CCCeEEEEECCCCC
Q psy16005 235 --AHRKVVLYRVPDFE 248 (248)
Q Consensus 235 --~d~~i~vw~~~~~~ 248 (248)
.|+.|+|||+.+++
T Consensus 340 g~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 340 GFAQNQLVIWKYPTMA 355 (420)
T ss_dssp CTTTCCEEEEETTTCC
T ss_pred ecCCCEEEEEECCCCc
Confidence 78999999998864
No 98
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-34 Score=241.54 Aligned_cols=232 Identities=13% Similarity=0.132 Sum_probs=174.2
Q ss_pred ccccCCcEEEEeCCC-CCEEEEeC-CcEEEEEecCCCceeeeeecC------------------CcceEEEEECcCCcEE
Q psy16005 14 RTQRGQPIVLGGDPK-GKNFLYTN-GNSVIIRNIENPAISDIYTEH------------------SCAVNVAKYSPSGFYI 73 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l 73 (248)
..|.+.|.+++|+|+ +..+++++ |+.| +||+.+++....+..| ...|.+++|+|+|++|
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 568899999999996 46777776 8999 9999999888777655 4779999999999999
Q ss_pred EEEccCCeEEEEECCCCceeeeeec---c-------------CCCCCeeEEEEec----CC-CEEEEEeCC------cEE
Q psy16005 74 ASGDISGKVRIWDTVNKEHILKNEF---H-------------PIGGPIKDIAWSP----DN-QRMISIVEN------GAK 126 (248)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~---~-------------~~~~~v~~~~~~~----~~-~~l~~~~~~------~~~ 126 (248)
++++.||.|++||+++++.+....+ . .|...|.+++|++ ++ ..+++++.+ .+.
T Consensus 227 asgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~ 306 (902)
T 2oaj_A 227 ITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLT 306 (902)
T ss_dssp EEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEE
T ss_pred EEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEE
Confidence 9999999999999998876532222 1 1345799999964 33 445555432 233
Q ss_pred EEE-----------------------------------------------------------------------ccCCC-
Q psy16005 127 VSS-----------------------------------------------------------------------LPIDY- 134 (248)
Q Consensus 127 i~~-----------------------------------------------------------------------~~~~~- 134 (248)
+|+ +..+.
T Consensus 307 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~ 386 (902)
T 2oaj_A 307 MIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIF 386 (902)
T ss_dssp EEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCE
T ss_pred EEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCc
Confidence 333 21100
Q ss_pred --------------------------------------------------CCceeEeCCCCCEEEEEcCCCeEEEEEC--
Q psy16005 135 --------------------------------------------------EPSSISLDHEHGLVAVGGADSKISIVEN-- 162 (248)
Q Consensus 135 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 162 (248)
.+..++++|+++++++++.|++|++||.
T Consensus 387 ~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~ 466 (902)
T 2oaj_A 387 TDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH 466 (902)
T ss_dssp ECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC
T ss_pred ccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC
Confidence 0112345678899999999999999993
Q ss_pred Ccee----eee--------cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC-----------------------
Q psy16005 163 GAKV----SSL--------PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS----------------------- 207 (248)
Q Consensus 163 ~~~~----~~~--------~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~----------------------- 207 (248)
+... ... .+...+.+++|+||+++||+|+.||+|+|||+.+++..
T Consensus 467 g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (902)
T 2oaj_A 467 GDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNT 546 (902)
T ss_dssp CTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGS
T ss_pred ccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCC
Confidence 2211 111 34567899999999999999999999999999876320
Q ss_pred ---------------------CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 208 ---------------------PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 208 ---------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.....+|.+.|++++||||| +||+|+.|++|++||++++
T Consensus 547 ~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 547 NGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp SCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred ccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 11223599999999999999 9999999999999998764
No 99
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=7.3e-34 Score=221.58 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=164.5
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCcee-----eeeecCCcceEEEEECc--------CCcEEEEEccCCeEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAIS-----DIYTEHSCAVNVAKYSP--------SGFYIASGDISGKVR 83 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~-----~~~~~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~ 83 (248)
+......++++++++++++ |++|++||..+++.. ..+.+|.+.|.+++|+| |+++||+++.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 3344444556677888887 999999999887643 34668999999999998 789999999999999
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-EEEEEccCC----------------------------
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG-AKVSSLPID---------------------------- 133 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~-~~i~~~~~~---------------------------- 133 (248)
|||++++... ..+..|..++.+++|+|++. +|++++.++ +++|++...
T Consensus 170 ~Wd~~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 170 IWRLTDEGPI--LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEETTEEE--EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEECCCCcee--eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 9999877644 45567889999999999875 788888887 599997532
Q ss_pred -------CCCceeEeC-CCCCEEEEEcCCCeEEEEEC--Cceeeeec-------------------ccCCCceEEEcC--
Q psy16005 134 -------YEPSSISLD-HEHGLVAVGGADSKISIVEN--GAKVSSLP-------------------IDYEPSSISLDH-- 182 (248)
Q Consensus 134 -------~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~--~~~~~~~~-------------------~~~~~~~~~~s~-- 182 (248)
..+.++.|. ++++.+++++.|+.+++||. ++....+. .........++|
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence 234456664 89999999999999999992 22221111 111122334444
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 183 EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 183 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
++.++++|+.||.|++||+.+++...... .|..+|.+++|+|||++||+++.+| +.+|++
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 44477788899999999999988765544 6888999999999999999998665 555554
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-33 Score=220.59 Aligned_cols=219 Identities=14% Similarity=0.135 Sum_probs=172.7
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEE-----------------E----------EecCCCceeeeee-cCCcceEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVI-----------------I----------RNIENPAISDIYT-EHSCAVNVAK 65 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~-----------------v----------~~~~~~~~~~~~~-~~~~~v~~~~ 65 (248)
.....|.+++|||||+++|+++ |++|+ + |++.+++....+. .|...|.+++
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va 92 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK 92 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence 4557899999999999999987 88884 1 2222222111222 4578899999
Q ss_pred ECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCC-----CeeEEEEecCCCEEEEEeCCc-EEEEEccCC------
Q psy16005 66 YSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG-----PIKDIAWSPDNQRMISIVENG-AKVSSLPID------ 133 (248)
Q Consensus 66 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------ 133 (248)
|||+|++||+++.||.|++||... .+ ..+. |.. .+.+++|+|||++|+++++|+ +++|++...
T Consensus 93 wSPdG~~LAs~s~dg~V~iwd~~~--~l--~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 93 PSPIDDWMAVLSNNGNVSVFKDNK--ML--TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp ECSSSSCEEEEETTSCEEEEETTE--EE--EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCc--ee--eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 999999999999999999999544 22 3344 544 599999999999999999888 499997643
Q ss_pred ---------------CCCceeEeCCCCCEEEEEcCCCeEEEEEC-Cce----eeee--cccCCCceEEEcCCCCEEEEEc
Q psy16005 134 ---------------YEPSSISLDHEHGLVAVGGADSKISIVEN-GAK----VSSL--PIDYEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 134 ---------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~--~~~~~~~~~~~s~~~~~l~~~~ 191 (248)
..+.+++|+|++ +++++.|+.+++|+. +.. .+.+ .+...+.+++|+ +..|++++
T Consensus 168 ~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~ 243 (588)
T 2j04_A 168 FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC 243 (588)
T ss_dssp CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred ceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence 257789999999 788899999999992 222 2344 245679999999 68999887
Q ss_pred CCCcEEEEEcCCCCCCCcccccCCcCeEEEEE--cCCCcEEEEEcCCCeEEEEECC
Q psy16005 192 ADSKVHIYELNNKSLSPKAELDHLGPVTDCSF--SPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
++.|++||+.+++.... ..+|.+.|..++| +||++.|++++.||+ ++|..+
T Consensus 244 -~~tIkLWd~~~~~~~~~-~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 244 -PGYVHKIDLKNYSISSL-KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -SSEEEEEETTTTEEEEE-ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred -CCeEEEEECCCCeEEEE-EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 69999999998776333 3379999999999 999999999999999 999874
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2e-32 Score=216.26 Aligned_cols=217 Identities=15% Similarity=0.224 Sum_probs=183.1
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...|.++++ +++++++|+ |+.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+.+++.+
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence 45567888877 788999886 999999999999999999999999999999 7889999999999999999998854
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCC-------------CCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDY-------------EPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
..+..|...|.+++|++ ..+++++.++ +++|++.... .+.++.+ +++++++++.|+.|++
T Consensus 207 --~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 207 --NTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp --EEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred --EEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 56778999999999974 5888888776 5999986543 2344555 7889999999999999
Q ss_pred EE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 160 VE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 160 ~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
|| .++.+..+. +...+.++++ ++.++++|+.||.|++||+++++....+. +|...|.+++| ++++|++++.|
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~d 355 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYD 355 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETT
T ss_pred EECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCC
Confidence 99 555666655 4556777777 47899999999999999999988765554 79999999999 78899999999
Q ss_pred CeEEEEECCC
Q psy16005 237 RKVVLYRVPD 246 (248)
Q Consensus 237 ~~i~vw~~~~ 246 (248)
|.|++||+.+
T Consensus 356 g~i~vwd~~~ 365 (435)
T 1p22_A 356 GKIKVWDLVA 365 (435)
T ss_dssp SCEEEEEHHH
T ss_pred CcEEEEECCC
Confidence 9999999854
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.2e-33 Score=212.63 Aligned_cols=214 Identities=13% Similarity=0.167 Sum_probs=181.1
Q ss_pred cccCCcEEEEeCCCCC-EEEEeC-CcEEEEEec-CCCceeeeeec--CCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNI-ENPAISDIYTE--HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~-~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|...|.+++|+|+++ +|++++ |+.|++||+ .+++. ..+.. |...|.+++|+| +++|++++.|+.|++||+++
T Consensus 54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence 5788999999999999 888886 999999999 77655 56778 999999999999 99999999999999999986
Q ss_pred ---------CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccC-C------------CCCceeEeCC-CC
Q psy16005 90 ---------KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPI-D------------YEPSSISLDH-EH 145 (248)
Q Consensus 90 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~-~------------~~~~~~~~~~-~~ 145 (248)
++.+ ..+. |...+.+++|+|++ +++++.+ .+++|+++. . ..+.+++++| ++
T Consensus 132 ~~~~~~~~~~~~~--~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 132 YGDGVIAVKNLNS--NNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp HTTBCEEEEESCS--SSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred cccccccccCCee--eEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC
Confidence 5533 3333 78899999999987 7777666 469999876 2 2457889999 99
Q ss_pred CEEEEEcCCCeEEEEE--CC------ceeeeeccc----------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 146 GLVAVGGADSKISIVE--NG------AKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~--~~------~~~~~~~~~----------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
+++++++.++.+++|+ .. +....+..+ ..+.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 207 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence 9999999999999998 32 444455432 27899999999999999999999999999998876
Q ss_pred CcccccC-CcCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 208 PKAELDH-LGPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 208 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
..+. .| ...|.+++ |++++|++++.||.
T Consensus 287 ~~~~-~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 287 KNFA-KFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECC-CCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred hhhh-cccCCCceEec--CCCCeEEEEecCCc
Confidence 6554 56 89999999 99999999999998
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-32 Score=214.84 Aligned_cols=228 Identities=16% Similarity=0.099 Sum_probs=182.4
Q ss_pred cccCCcEEEEeCCCCCEE-EEeC-CcEEEEEecC--CCceeeeee--cCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKGKNF-LYTN-GNSVIIRNIE--NPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l-~~~~-~~~v~v~~~~--~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
.|.+.|.+++|+|++++| ++++ |+.|++||+. +++....+. .|...|.+++|+|++++|++++.+|.|++|++.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 356689999999999996 7775 8999999999 788877776 567899999999999999999999999999998
Q ss_pred CCcee--eeeeccCCCCCeeEEEEecC---CCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCCCCCEEEEE
Q psy16005 89 NKEHI--LKNEFHPIGGPIKDIAWSPD---NQRMISIVENG-AKVSSLPI-----------DYEPSSISLDHEHGLVAVG 151 (248)
Q Consensus 89 ~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~ 151 (248)
+++.. ....+.+|...|.+++|+|+ +++|++++.++ +++|+++. ...+.+++|+ ++++++++
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE
Confidence 87643 22356778999999999999 99999999776 69999753 2456788999 99999999
Q ss_pred cCCCeEEEEE--CCceeeeecc--------------------------cCCCceEEEcCCCCEEEEEc-CCCcEEEEEc-
Q psy16005 152 GADSKISIVE--NGAKVSSLPI--------------------------DYEPSSISLDHEHGLVAVGG-ADSKVHIYEL- 201 (248)
Q Consensus 152 ~~~~~i~~~~--~~~~~~~~~~--------------------------~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~- 201 (248)
+.|+.|++|| .++.+..+.. ...+..++|+|++++|++++ .++.|++|++
T Consensus 259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~ 338 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMS 338 (450)
T ss_dssp ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEEC
T ss_pred eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEec
Confidence 9999999999 5555555542 23467899999999999998 8999999999
Q ss_pred -CCC---CCCCcccccCCcCeEEEEEcCCCcEEEEEcC------CCeEEEEECC
Q psy16005 202 -NNK---SLSPKAELDHLGPVTDCSFSPSNEYLVASDA------HRKVVLYRVP 245 (248)
Q Consensus 202 -~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~vw~~~ 245 (248)
.++ +....+. .| ..|.+++|+|++.++++++. ++.|.+|.+.
T Consensus 339 ~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 339 EKQKGDLALKQIIT-FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SSSTTCEEEEEEEE-CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred cCCCCceeeccEec-cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 444 2222222 45 78999999996544444332 4568888764
No 104
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-33 Score=213.49 Aligned_cols=194 Identities=18% Similarity=0.238 Sum_probs=155.4
Q ss_pred eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EEEEE
Q psy16005 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AKVSS 129 (248)
Q Consensus 53 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~i~~ 129 (248)
.+.+|.+.|++++|+|++++|++|+.|++|++||+.+++......+.+|...|.+++|++ ++++|++++.|+ +++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 356899999999999999999999999999999998876444567889999999999986 489999999776 69999
Q ss_pred ccC------------CCCCceeEeCCC--CCEEEEEcCCCeEEEEECCce--e---eee-cccCCCceEEEcCC------
Q psy16005 130 LPI------------DYEPSSISLDHE--HGLVAVGGADSKISIVENGAK--V---SSL-PIDYEPSSISLDHE------ 183 (248)
Q Consensus 130 ~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~---~~~-~~~~~~~~~~~s~~------ 183 (248)
++. ...+.+++|+|+ +.++++++.|+.|++|+.... . ..+ .+...+.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 753 235788999998 789999999999999993321 1 112 24556789999997
Q ss_pred -----------CCEEEEEcCCCcEEEEEcCCCCC--CCcccccCCcCeEEEEEcCCC----cEEEEEcCCCeEEEEECCC
Q psy16005 184 -----------HGLVAVGGADSKVHIYELNNKSL--SPKAELDHLGPVTDCSFSPSN----EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 184 -----------~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~vw~~~~ 246 (248)
+++|++|+.|+.|++||++.... ......+|...|.+++|+|++ ++|++++.|++|++|++++
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46899999999999999975521 112234799999999999987 7899999999999999875
No 105
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-32 Score=209.63 Aligned_cols=199 Identities=16% Similarity=0.209 Sum_probs=165.3
Q ss_pred CceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCce---eeeeeccCCCCCeeEEEEecCCCEEEEEeCC
Q psy16005 48 PAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEH---ILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123 (248)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 123 (248)
.++..++++|.+.|++++|+|+ +++|+||+.||+|++||+.+.+. .....+.+|...|.+++|+|++++|++++.+
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 3455678999999999999997 68999999999999999986543 2345678899999999999999999999988
Q ss_pred cE-EEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEECCc-eeeee---cccCCCceEEEcCCC--CE
Q psy16005 124 GA-KVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVENGA-KVSSL---PIDYEPSSISLDHEH--GL 186 (248)
Q Consensus 124 ~~-~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~---~~~~~~~~~~~s~~~--~~ 186 (248)
+. ++|+... ........+.++++.+++++.|+.+++||... ..... .+...+..+++++++ .+
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence 85 7888653 34456677889999999999999999999433 22222 234567888888765 47
Q ss_pred EEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 187 VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+++++.|+.|++||+++++....+. +|.+.|++++|+|++++|++++.|+.|++||++++
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred EEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 8899999999999999988765554 79999999999999999999999999999999875
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=210.13 Aligned_cols=217 Identities=12% Similarity=0.054 Sum_probs=170.9
Q ss_pred EeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC---------CCcee
Q psy16005 24 GGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV---------NKEHI 93 (248)
Q Consensus 24 ~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---------~~~~~ 93 (248)
.+.+++..+++|+ |+.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 3456788899987 9999999999998887775 467888889988 9999999999999766 33322
Q ss_pred eeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AKVSSLPI-----------DYEPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
. .....|...|.+++|+| +++++++++.++ +++|++.. ...+.+++|+|++.++++|+.|+.|++
T Consensus 118 ~-~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 R-EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp E-EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred E-EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 1 22235678899999999 999999999776 69999753 235789999999999999999999999
Q ss_pred EE--CCcee-eeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc--cCCcCeE--EEEEcCCCcEE
Q psy16005 160 VE--NGAKV-SSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL--DHLGPVT--DCSFSPSNEYL 230 (248)
Q Consensus 160 ~~--~~~~~-~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~~v~--~~~~s~~~~~l 230 (248)
|| .++.. ..+. +...+.+++|+|++.+|++++ ++.|++||+++.+....+.. .|...+. +++|+|+|++|
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 275 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence 99 44444 4444 467899999999999999999 55999999998876543321 1333343 69999999999
Q ss_pred EEEcC-CCeEEEEECCCC
Q psy16005 231 VASDA-HRKVVLYRVPDF 247 (248)
Q Consensus 231 ~~~~~-d~~i~vw~~~~~ 247 (248)
++++. |+.+++|++.+.
T Consensus 276 ~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEEETTTTEEEEEEECTT
T ss_pred EEecCCCCcEEEEEEccc
Confidence 99988 999999998543
No 107
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.6e-32 Score=204.69 Aligned_cols=208 Identities=10% Similarity=0.066 Sum_probs=146.9
Q ss_pred ccCCcEEEEeCCC----CCEEEEeC---------------------CcEEEEEec-CCCceeeeeecCCcceEEEEECc-
Q psy16005 16 QRGQPIVLGGDPK----GKNFLYTN---------------------GNSVIIRNI-ENPAISDIYTEHSCAVNVAKYSP- 68 (248)
Q Consensus 16 ~~~~v~~~~~s~~----~~~l~~~~---------------------~~~v~v~~~-~~~~~~~~~~~~~~~v~~~~~s~- 68 (248)
+.+.|.+++++|| ++.++.++ |+.|++|++ .+++....+..|...+..++|+|
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 4557888888888 76666522 678888888 44777777778888888888888
Q ss_pred --CCcEEEEEccCCeEEEEECCCCceeeeeeccCC---CCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCC
Q psy16005 69 --SGFYIASGDISGKVRIWDTVNKEHILKNEFHPI---GGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDH 143 (248)
Q Consensus 69 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 143 (248)
++.+|++++.|++|+|||+++++.+ ..+.+| ...+.+++|+|+|+++++++.+.. +|
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l--~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~-~w--------------- 251 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLL--KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA-KE--------------- 251 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEE--EEEECCC---CCCEEEEEEETTEEEEEEC----------------------
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEE--EEEcCCCcceeeeEEEEECCCCCEEEEeccCCC-cc---------------
Confidence 6789999999999999999999865 344443 346778899999999988764321 12
Q ss_pred CCCEEEEEcCCCeEEEEE--CCceeeeecc----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC
Q psy16005 144 EHGLVAVGGADSKISIVE--NGAKVSSLPI----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 217 (248)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~--~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 217 (248)
.+++|+.|+++++|| .++.+..+.. ......+..+.++.++++++.|++|+|||+.+++....+. +|...
T Consensus 252 ---~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~ 327 (356)
T 2w18_A 252 ---SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQ 327 (356)
T ss_dssp ---------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEEC-CC--C
T ss_pred ---eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCC
Confidence 467899999999999 4555443321 1111233334447789999999999999999999876655 67665
Q ss_pred e-EEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 218 V-TDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 218 v-~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+ ..++|+|||++|++|+.|++|+|||+.
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 4 468999999999999999999999963
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.4e-32 Score=214.92 Aligned_cols=221 Identities=15% Similarity=0.248 Sum_probs=181.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|.+.|.+++| ++++|++|+ ||.|++||+.+++....+..|...|.+++|++ ..+++|+.||.|++||+.+++..
T Consensus 171 ~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 171 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI 246 (435)
T ss_dssp CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC
T ss_pred CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc
Confidence 58889999999 788999887 99999999999999999999999999999974 58999999999999999887643
Q ss_pred -eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 94 -LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 94 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
....+.+|...|.+++| +++++++++.++ +++|++... ..+.++.+ +++++++++.|+.|++||
T Consensus 247 ~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd 322 (435)
T 1p22_A 247 TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD 322 (435)
T ss_dssp EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 22456789999999999 788999999877 599998643 33445555 578999999999999999
Q ss_pred --CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC--------CCcccccCCcCeEEEEEcCCCcEE
Q psy16005 162 --NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL--------SPKAELDHLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 162 --~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l 230 (248)
.++.+..+. +...+.++++ ++.+|++|+.||.|++||+.+++. ......+|.+.|.+++| ++++|
T Consensus 323 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l 398 (435)
T 1p22_A 323 IECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQI 398 (435)
T ss_dssp TTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCE
T ss_pred CCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEE
Confidence 566666665 4556788888 788999999999999999976551 11223378999999999 78899
Q ss_pred EEEcCCCeEEEEECCCC
Q psy16005 231 VASDAHRKVVLYRVPDF 247 (248)
Q Consensus 231 ~~~~~d~~i~vw~~~~~ 247 (248)
++++.||.|++||+.+.
T Consensus 399 ~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 399 VSSSHDDTILIWDFLND 415 (435)
T ss_dssp EECCSSSEEEEEC----
T ss_pred EEEeCCCEEEEEECCCC
Confidence 99999999999998764
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-32 Score=209.09 Aligned_cols=200 Identities=20% Similarity=0.254 Sum_probs=166.7
Q ss_pred CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-
Q psy16005 48 PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG- 124 (248)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~- 124 (248)
|++...+.+|...|.+++|+|++++|++|+.||.|++||+..+.......+.+|...|.+++|+++ +++|++++.++
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 345677889999999999999999999999999999999985544455677889999999999977 89999999876
Q ss_pred EEEEEccC------------CCCCceeEeCCC--CCEEEEEcCCCeEEEEECCc-----eeeeecccCCCceEEEcC---
Q psy16005 125 AKVSSLPI------------DYEPSSISLDHE--HGLVAVGGADSKISIVENGA-----KVSSLPIDYEPSSISLDH--- 182 (248)
Q Consensus 125 ~~i~~~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~s~--- 182 (248)
+++|++.. ...+.+++|+|+ +.++++++.|+.|++||... ......+...+.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 69999753 345788999999 99999999999999999322 122224566789999999
Q ss_pred ----------CCCEEEEEcCCCcEEEEEcCCCCCCC---cccccCCcCeEEEEEcCC---CcEEEEEcCCCeEEEEECCC
Q psy16005 183 ----------EHGLVAVGGADSKVHIYELNNKSLSP---KAELDHLGPVTDCSFSPS---NEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 183 ----------~~~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~vw~~~~ 246 (248)
++.+|++++.|+.|++||++++.... ....+|...|.+++|+|+ +++|++++.||.|++||+++
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999999999998776431 223368999999999999 89999999999999999987
Q ss_pred C
Q psy16005 247 F 247 (248)
Q Consensus 247 ~ 247 (248)
+
T Consensus 241 ~ 241 (379)
T 3jrp_A 241 E 241 (379)
T ss_dssp T
T ss_pred C
Confidence 5
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.3e-30 Score=202.97 Aligned_cols=225 Identities=15% Similarity=0.184 Sum_probs=181.3
Q ss_pred CCcEEEEeCCCCCEEE-EeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFL-YTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~-~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~ 94 (248)
..+.+++|+|+|++++ +++ ++.|++||+.+++....+..+. .+.+++|+|++++|+ +++.++.|++||+.+++.+.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 4589999999999874 453 8999999999999888886554 899999999999775 55577999999999887543
Q ss_pred eeeccCCCCCeeEEEEecCCCEEE-EEeCCc-EEEEEccC---------CCCCceeEeCCCCCEE-EEEcCCCeEEEEE-
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMI-SIVENG-AKVSSLPI---------DYEPSSISLDHEHGLV-AVGGADSKISIVE- 161 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~-~~i~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~- 161 (248)
.+. +...+.+++|+|+++.++ +++.++ +.+|++.. +..+..++++|+++.+ ++++.++.|++||
T Consensus 111 --~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 111 --TVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp --EEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred --EEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 333 345789999999999884 555444 68898753 4556788999999877 5778899999999
Q ss_pred -CCceeeeecccCCCceEEEcCCCCEEEEEc---CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEE-EEEcCC
Q psy16005 162 -NGAKVSSLPIDYEPSSISLDHEHGLVAVGG---ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYL-VASDAH 236 (248)
Q Consensus 162 -~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d 236 (248)
.++....+.....+.+++|+|+++++++++ .++.|++||+++++...... .| ..+.+++|+|++++| ++++.|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~s~~~d 265 (391)
T 1l0q_A 188 VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VG-PDPAGIAVTPDGKKVYVALSFX 265 (391)
T ss_dssp TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSEEEEEETTT
T ss_pred CCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-cC-CCccEEEEccCCCEEEEEcCCC
Confidence 455666666777789999999999999887 68999999999887654443 23 458999999999987 566889
Q ss_pred CeEEEEECCCCC
Q psy16005 237 RKVVLYRVPDFE 248 (248)
Q Consensus 237 ~~i~vw~~~~~~ 248 (248)
+.|++||+.+++
T Consensus 266 ~~v~v~d~~~~~ 277 (391)
T 1l0q_A 266 NTVSVIDTATNT 277 (391)
T ss_dssp TEEEEEETTTTE
T ss_pred CEEEEEECCCCc
Confidence 999999998763
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.6e-31 Score=208.10 Aligned_cols=227 Identities=18% Similarity=0.154 Sum_probs=188.9
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCce
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~ 92 (248)
.|.+.+.+++|+|+++++++++ ++.|++||+.+++....+..|...+.+++|+|+++.++ +++.++.|++||+++++.
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence 5677899999999999999987 89999999999999888888999999999999998875 555899999999998875
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeC--------C-cEEEEEccC---------CCCCceeEeCCCCCE-EEEEcC
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVE--------N-GAKVSSLPI---------DYEPSSISLDHEHGL-VAVGGA 153 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------~-~~~i~~~~~---------~~~~~~~~~~~~~~~-~~~~~~ 153 (248)
. ..+.. ...+.+++|+|+++.+++++. + .+.+|++.. ...+..++++|+++. +++++.
T Consensus 247 ~--~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 247 I--RKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp E--EECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETT
T ss_pred E--EEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecC
Confidence 4 33333 456899999999999988872 3 468998753 345678899999975 566789
Q ss_pred CCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcC---------------CCcEEEEEcCCCCCCCcccccCCc
Q psy16005 154 DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGA---------------DSKVHIYELNNKSLSPKAELDHLG 216 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------------d~~v~i~d~~~~~~~~~~~~~~~~ 216 (248)
++.+++|| .++....+.....+.+++|+|+++++++++. ||.|++||+.+++...... +..
T Consensus 324 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~~ 401 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE--AGN 401 (433)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--CSS
T ss_pred CCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--CCC
Confidence 99999999 5666777777778899999999998888876 5799999999988755443 356
Q ss_pred CeEEEEEcCCCcEEEEEcC-CCeEEEEECCC
Q psy16005 217 PVTDCSFSPSNEYLVASDA-HRKVVLYRVPD 246 (248)
Q Consensus 217 ~v~~~~~s~~~~~l~~~~~-d~~i~vw~~~~ 246 (248)
.+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 402 QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 7999999999999988765 99999999875
No 112
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.8e-32 Score=210.88 Aligned_cols=212 Identities=20% Similarity=0.261 Sum_probs=174.8
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCceeeeeec-----------cCCCCC
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEF-----------HPIGGP 104 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~ 104 (248)
++.+++|+++.++....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.+++....... .+|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45677888888888888889999999999999 999999999999999999998765432221 258999
Q ss_pred eeEEEEec-CCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCCC---CCEEEEEcCCCeEEEEE--CCceeee
Q psy16005 105 IKDIAWSP-DNQRMISIVENG-AKVSSLPI---------DYEPSSISLDHE---HGLVAVGGADSKISIVE--NGAKVSS 168 (248)
Q Consensus 105 v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~--~~~~~~~ 168 (248)
|.+++|+| ++++|++++.++ +++|++.. ...+..+.+.+. +.++++++.++.|++|| .++.+..
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence 99999999 778999999776 69999764 345567777774 45999999999999999 4555555
Q ss_pred ec-ccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCcc---------------cccCCcCeEEEEEcCCCcEEE
Q psy16005 169 LP-IDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKA---------------ELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 169 ~~-~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~---------------~~~~~~~v~~~~~s~~~~~l~ 231 (248)
+. +...+.+++|+|+++ ++++++.||.|++||++++...... ...|...|.+++|+|++++|+
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 55 566789999999998 5899999999999999876522111 136889999999999999999
Q ss_pred EEcCCCeEEEEECCCCC
Q psy16005 232 ASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 232 ~~~~d~~i~vw~~~~~~ 248 (248)
+++.||.|++||+.+++
T Consensus 262 ~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp EEETTSCEEEEETTTCC
T ss_pred EecCCCeEEEEECCCCc
Confidence 99999999999998763
No 113
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-30 Score=205.95 Aligned_cols=225 Identities=17% Similarity=0.235 Sum_probs=183.9
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
+..+. .|.+.|.+++|+ ++.+++++ |+.|++||+.+++....+.+|...|.++.|+ ++.+++|+.||.|++||+
T Consensus 152 ~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 152 LRTLV-GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp EEECC-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred EEEEc-CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence 33443 588899999997 56788776 9999999999999999999999999999995 568999999999999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
.+++.+ ..+.+|...+.+++| +++++++++.++ +++|++.. ...+.++.+ ++..+++++.|+.
T Consensus 227 ~~~~~~--~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~ 300 (445)
T 2ovr_B 227 ETGQCL--HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS 300 (445)
T ss_dssp SSCCEE--EEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC
T ss_pred CCCcEE--EEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe
Confidence 988754 566788999999999 788899998776 69999753 234556666 7889999999999
Q ss_pred EEEEE--CCceeeeecc-cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc--cCCcCeEEEEEcCCCcEEE
Q psy16005 157 ISIVE--NGAKVSSLPI-DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL--DHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 157 i~~~~--~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~ 231 (248)
|++|| .++.+..+.. ...+.++. ++++++++|+.||.|++||+++++....+.. .|...|.+++|+ +++|+
T Consensus 301 i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 376 (445)
T 2ovr_B 301 IRVWDVETGNCIHTLTGHQSLTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVI 376 (445)
T ss_dssp EEEEETTTCCEEEEECCCCSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEE
T ss_pred EEEEECCCCCEEEEEcCCcccEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEE
Confidence 99999 5556665543 33344454 4677999999999999999999887655442 388899999995 58999
Q ss_pred EEcCCCeEEEEECCCCC
Q psy16005 232 ASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 232 ~~~~d~~i~vw~~~~~~ 248 (248)
+++.||.|++||+.+++
T Consensus 377 s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 377 TSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp EEETTSEEEEEETTTCC
T ss_pred EEeCCCeEEEEECCCCc
Confidence 99999999999998874
No 114
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.4e-31 Score=207.49 Aligned_cols=222 Identities=14% Similarity=0.204 Sum_probs=186.2
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...|.+++|+ ++.+++++ |+.|++||+.+++....+.+|...|.+++| +++++++++.||.|++||+++++.+
T Consensus 197 ~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 272 (445)
T 2ovr_B 197 GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL 272 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe
Confidence 578899999995 56677776 999999999999999999999999999999 6789999999999999999988754
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCCC--------ceeEeCCCCCEEEEEcCCCeEEEEE--C
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYEP--------SSISLDHEHGLVAVGGADSKISIVE--N 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~--~ 162 (248)
..+.+|...+.+++| +++++++++.++ +++|++.....+ ....+.++++++++++.|+.|++|| .
T Consensus 273 --~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 273 --HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp --EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred --EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence 566788999999999 788999998776 699998654322 1223445678999999999999999 5
Q ss_pred Cceeeeec----ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc----ccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 163 GAKVSSLP----IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE----LDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 163 ~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
++.+..+. +...+.+++++ +++|++|+.||.|++||+.+++....+. .+|.+.|.+++|+|++.++++++
T Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~ 426 (445)
T 2ovr_B 349 GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 426 (445)
T ss_dssp CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc
Confidence 66666665 45567888886 5799999999999999999998765542 25788999999999999999999
Q ss_pred CCCe----EEEEECCC
Q psy16005 235 AHRK----VVLYRVPD 246 (248)
Q Consensus 235 ~d~~----i~vw~~~~ 246 (248)
.||. +.+||++.
T Consensus 427 ~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 427 RNGTEETKLLVLDFDV 442 (445)
T ss_dssp SSSSSCCEEEEEECCC
T ss_pred cCCCCccEEEEEECCC
Confidence 9997 99999964
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=6.6e-31 Score=207.21 Aligned_cols=227 Identities=12% Similarity=0.072 Sum_probs=186.3
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee-----eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD-----IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
..+.+++|+|++.++++++ ++.|++||+.+++... .+.+|...|.+++|+|+++++++++.|+.|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 4566899999777777766 7899999999988776 445788899999999999999999999999999999887
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEe-CC-cEEEEEccC---------CCCCceeEeCCCCCEEEEEc--------
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIV-EN-GAKVSSLPI---------DYEPSSISLDHEHGLVAVGG-------- 152 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~-~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~-------- 152 (248)
.. ..+..|...+.+++|+|+++.+++++ .+ .+.+|++.. ...+..++++|+++.+++++
T Consensus 203 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 280 (433)
T 3bws_A 203 YK--ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQES 280 (433)
T ss_dssp EE--EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred EE--EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcccc
Confidence 54 45557788999999999999886665 44 468898753 34467889999999998887
Q ss_pred CCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE
Q psy16005 153 ADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLV-AVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY 229 (248)
Q Consensus 153 ~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 229 (248)
.|+.|++|| .++....+.+...+.+++|+|+++.+ ++++.++.|++||+.+++..... .+...+.+++|+|++++
T Consensus 281 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~ 358 (433)
T 3bws_A 281 GGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI--PVFDKPNTIALSPDGKY 358 (433)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSE
T ss_pred CCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe--cCCCCCCeEEEcCCCCE
Confidence 588999999 45666666666788899999999755 56688999999999988765444 46778999999999999
Q ss_pred EEEEcC---------------CCeEEEEECCCCC
Q psy16005 230 LVASDA---------------HRKVVLYRVPDFE 248 (248)
Q Consensus 230 l~~~~~---------------d~~i~vw~~~~~~ 248 (248)
|++++. ||.|++||+.+++
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 888865 5799999998763
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-30 Score=205.85 Aligned_cols=211 Identities=9% Similarity=0.092 Sum_probs=163.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCc-----ceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSC-----AVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
.+...|.+++|||+|+.||+++ ||.|++||.++ ....+. |.. .+.+++|||||++||+|+.||+|++||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 4478899999999999999987 99999999544 555555 655 49999999999999999999999999999
Q ss_pred CCce-----eeeeec----cCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC--------------CCCceeEeCCCC
Q psy16005 89 NKEH-----ILKNEF----HPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID--------------YEPSSISLDHEH 145 (248)
Q Consensus 89 ~~~~-----~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~--------------~~~~~~~~~~~~ 145 (248)
++.. .....+ .+|...|.+++|+||| .++++.++.+++|++... ..+.+++|+ +
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g 236 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D 236 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence 8752 112333 6788999999999999 555555666899997432 236677888 5
Q ss_pred CEEEEEcCCCeEEEEE-CCcee--eeecccCCCceEEE--cCCCCEEEEEcCCCcEEEEEcCC-----C-----------
Q psy16005 146 GLVAVGGADSKISIVE-NGAKV--SSLPIDYEPSSISL--DHEHGLVAVGGADSKVHIYELNN-----K----------- 204 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~-~~~~~--~~~~~~~~~~~~~~--s~~~~~l~~~~~d~~v~i~d~~~-----~----------- 204 (248)
+.+++++ ++.|++|| .+... ....+...+..+++ +|++..+++++++|. ++|..+. .
T Consensus 237 ~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v 314 (588)
T 2j04_A 237 YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKF 314 (588)
T ss_dssp TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHH
T ss_pred CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEE
Confidence 8888887 69999999 33333 23356677899999 999999999999999 9998632 1
Q ss_pred -------CCCCcccccCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 205 -------SLSPKAELDHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 205 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
.... ...+...|.+++|||||+.+|+++.
T Consensus 315 ~lW~~~g~~l~--~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 315 KKWSTIWNEFN--NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHTTTTTTSSS--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEECCCCcee--eeccceEEEEEEECCCCCEEEEEEe
Confidence 1111 1123456999999999999998863
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1.2e-30 Score=201.07 Aligned_cols=205 Identities=16% Similarity=0.278 Sum_probs=162.5
Q ss_pred EecCCCceeeeeecCCcceEEEEECcC---CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEE
Q psy16005 43 RNIENPAISDIYTEHSCAVNVAKYSPS---GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMIS 119 (248)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 119 (248)
++....+....+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+........+.+|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 445566677788899999999999998 69999999999999999998443344567789999999999999999999
Q ss_pred EeCCc-EEEEEcc---------CCCCCceeEe--CCCCCEEEEEcCCCeEEEEE--CCceeeeecccC------------
Q psy16005 120 IVENG-AKVSSLP---------IDYEPSSISL--DHEHGLVAVGGADSKISIVE--NGAKVSSLPIDY------------ 173 (248)
Q Consensus 120 ~~~~~-~~i~~~~---------~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~------------ 173 (248)
++.++ +++|++. ....+.++.| +++++++++++.|+.|++|| .++.+..+..+.
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA 183 (368)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred EcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence 99887 5999975 3456788999 89999999999999999999 344443333221
Q ss_pred ------------------------------CCceEEEcCCCCE----EEEEcCCCcEEEEEcCCCCC---CCcccccCCc
Q psy16005 174 ------------------------------EPSSISLDHEHGL----VAVGGADSKVHIYELNNKSL---SPKAELDHLG 216 (248)
Q Consensus 174 ------------------------------~~~~~~~s~~~~~----l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~ 216 (248)
...++++.++... +++++.|+.|++||++.... ...+. .|..
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~ 262 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK-CHRS 262 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE-CSEE
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee-eeec
Confidence 2234444443333 99999999999999988742 22222 4544
Q ss_pred ------------CeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 217 ------------PVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 217 ------------~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.|++++|+|++++|++++.||.|++||+++++
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence 79999999999999999999999999998763
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=5.6e-30 Score=201.94 Aligned_cols=229 Identities=18% Similarity=0.269 Sum_probs=179.8
Q ss_pred CCcEEEEeCCCC----------CEEEEeC-----CcEEEEEecC--------------------------CCce-eeeee
Q psy16005 18 GQPIVLGGDPKG----------KNFLYTN-----GNSVIIRNIE--------------------------NPAI-SDIYT 55 (248)
Q Consensus 18 ~~v~~~~~s~~~----------~~l~~~~-----~~~v~v~~~~--------------------------~~~~-~~~~~ 55 (248)
-+..++.|.|+. .++++|. .+.|.++++. +++. .....
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 356788888875 3566663 3577777543 1111 23345
Q ss_pred cCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCC--------ceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-
Q psy16005 56 EHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNK--------EHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG- 124 (248)
Q Consensus 56 ~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~- 124 (248)
.|.+.|++++|+|+ +++|++++.+|.|++||+... .......+.+|...+.+++|+|+++ +|++++.++
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 79999999999997 789999999999999999761 1223456778999999999999988 899888776
Q ss_pred EEEEEccC-----------------CCCCceeEeCC-CCCEEEEEcCCCeEEEEECC-----ceeeee-cccCCCceEEE
Q psy16005 125 AKVSSLPI-----------------DYEPSSISLDH-EHGLVAVGGADSKISIVENG-----AKVSSL-PIDYEPSSISL 180 (248)
Q Consensus 125 ~~i~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~-----~~~~~~-~~~~~~~~~~~ 180 (248)
+.+|++.. ...+.+++|+| ++.++++++.|+.|++||.. +....+ .+...+++++|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 69999864 22367889999 67899999999999999933 344444 45677899999
Q ss_pred cCCCC-EEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCC
Q psy16005 181 DHEHG-LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 181 s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~ 246 (248)
+|++. ++++|+.||.|++||+++..........|...|.+++|+|+++ +|++++.|+.|++||+..
T Consensus 286 ~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 99987 7889999999999999985543344447999999999999996 688999999999999875
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=3.9e-29 Score=194.61 Aligned_cols=211 Identities=13% Similarity=0.183 Sum_probs=172.8
Q ss_pred EEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccCCCCCeeEE
Q psy16005 31 NFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDI 108 (248)
Q Consensus 31 ~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 108 (248)
.+++++ ++.|++||+.+++....+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++... .+..+ ..+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~--~~~~~-~~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA--TVPAG-SSPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE--EEECS-SSEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE--EEECC-CCccce
Confidence 455555 8999999999999988887665 58999999999876 677799999999999888653 33333 489999
Q ss_pred EEecCCCEEEEEe-C-CcEEEEEccC---------CCCCceeEeCCCCCEE-EEEcCCCeEEEEE--CCceeeeecccCC
Q psy16005 109 AWSPDNQRMISIV-E-NGAKVSSLPI---------DYEPSSISLDHEHGLV-AVGGADSKISIVE--NGAKVSSLPIDYE 174 (248)
Q Consensus 109 ~~~~~~~~l~~~~-~-~~~~i~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~~~~~ 174 (248)
+|+|+++++++++ . +.+.+|++.. +..+..++|+|+++.+ ++++.++.|++|| .++.+..+.....
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 159 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS 159 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC
Confidence 9999999887666 3 3468888753 3456789999999977 6888899999999 5666777777777
Q ss_pred CceEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc---CCCeEEEEECCCC
Q psy16005 175 PSSISLDHEHGLV-AVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD---AHRKVVLYRVPDF 247 (248)
Q Consensus 175 ~~~~~~s~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~vw~~~~~ 247 (248)
+.+++|+|+++++ ++++.++.|++||+++++..... .+...+.+++|+|++++|++++ .++.|++||++++
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV--KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE--ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 8999999999977 56778899999999988765443 3566889999999999998887 6899999999875
No 120
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.5e-29 Score=193.35 Aligned_cols=196 Identities=12% Similarity=0.128 Sum_probs=161.1
Q ss_pred eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce--eeeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EE
Q psy16005 52 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH--ILKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AK 126 (248)
Q Consensus 52 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~ 126 (248)
..+.+|.+.|++++|+|++++|++++.||.|++||+.++.. .....+.+|...|.+++|+| ++++|++++.++ ++
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 45679999999999999999999999999999999987642 23355678999999999999 699999999877 69
Q ss_pred EEEccC-------------------CCCCceeEeCCC--CCEEEEEcCCCeEEEEEC--Cceeeee--------------
Q psy16005 127 VSSLPI-------------------DYEPSSISLDHE--HGLVAVGGADSKISIVEN--GAKVSSL-------------- 169 (248)
Q Consensus 127 i~~~~~-------------------~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~--~~~~~~~-------------- 169 (248)
+|++.. ...+.+++|+|+ +.++++++.|+.|++||. ++.+..+
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 999854 234678899999 999999999999999993 3222211
Q ss_pred cccCCCceEEEcCC---CCEEEEEcCCCcEEEEEcCCCCCC-CcccccCCcCeEEEEEcCCC----cEEEEEcCCCeEEE
Q psy16005 170 PIDYEPSSISLDHE---HGLVAVGGADSKVHIYELNNKSLS-PKAELDHLGPVTDCSFSPSN----EYLVASDAHRKVVL 241 (248)
Q Consensus 170 ~~~~~~~~~~~s~~---~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~v 241 (248)
.+...+.+++|+|+ +..+++++.++.+.+|+...++.. .....+|...|++++|+|++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 23456789999997 889999999999988887776642 12233689999999999998 89999999999999
Q ss_pred EECCCC
Q psy16005 242 YRVPDF 247 (248)
Q Consensus 242 w~~~~~ 247 (248)
||++++
T Consensus 245 wd~~~~ 250 (351)
T 3f3f_A 245 FKITEK 250 (351)
T ss_dssp EEEEEC
T ss_pred EeCCCC
Confidence 998753
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-30 Score=215.06 Aligned_cols=196 Identities=20% Similarity=0.262 Sum_probs=163.3
Q ss_pred eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEE
Q psy16005 52 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVS 128 (248)
Q Consensus 52 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~ 128 (248)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.++.......+.+|...|.+++|+|+ +++|++++.++ +++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 45679999999999999999999999999999999986554455678899999999999988 99999999887 6999
Q ss_pred EccC------------CCCCceeEeCCC--CCEEEEEcCCCeEEEEECCc-----eeeeecccCCCceEEEcC-------
Q psy16005 129 SLPI------------DYEPSSISLDHE--HGLVAVGGADSKISIVENGA-----KVSSLPIDYEPSSISLDH------- 182 (248)
Q Consensus 129 ~~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~s~------- 182 (248)
++.. ...+.+++|+|+ ++.+++++.|+.|++||... ......+...+.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 9754 346788999999 99999999999999999322 222234567789999999
Q ss_pred ------CCCEEEEEcCCCcEEEEEcCCCCCC---CcccccCCcCeEEEEEcCC---CcEEEEEcCCCeEEEEECCCC
Q psy16005 183 ------EHGLVAVGGADSKVHIYELNNKSLS---PKAELDHLGPVTDCSFSPS---NEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 183 ------~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~vw~~~~~ 247 (248)
++.++++|+.||.|++||++++... .....+|...|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 5899999999999999999887532 1223368999999999999 899999999999999999875
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-29 Score=192.54 Aligned_cols=216 Identities=8% Similarity=0.061 Sum_probs=162.4
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecC---------CCceeeeee-cCCcceEEEEECc--CCcEEEEEccCCeEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIE---------NPAISDIYT-EHSCAVNVAKYSP--SGFYIASGDISGKVRI 84 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~---------~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i 84 (248)
+.|.++.|+|+ +++++ |+.+++|+.. +++....+. .|.++|.+++|+| +++++++++.||+|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 45667778888 66665 9999999665 444344443 6778999999999 9999999999999999
Q ss_pred EECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC------------CCCCceeEeCCCCCEEEEE
Q psy16005 85 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI------------DYEPSSISLDHEHGLVAVG 151 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~------------~~~~~~~~~~~~~~~~~~~ 151 (248)
||+++++... .....+...+.+++|+|++++|++++.++ +++|+++. ...+.+++|+|++.+++++
T Consensus 154 wd~~~~~~~~-~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~ 232 (343)
T 3lrv_A 154 QSYEDDSQYI-VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVE 232 (343)
T ss_dssp EESSSSCEEE-EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEE
T ss_pred EECCCCcEEE-EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEE
Confidence 9999888632 22234566899999999999999988776 59999742 3456789999999999999
Q ss_pred cCCCeEEEEECC--ceeeeecc----cCCC--ceEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCCCcccccCCcCeEEEE
Q psy16005 152 GADSKISIVENG--AKVSSLPI----DYEP--SSISLDHEHGLVAVGGA-DSKVHIYELNNKSLSPKAELDHLGPVTDCS 222 (248)
Q Consensus 152 ~~~~~i~~~~~~--~~~~~~~~----~~~~--~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~ 222 (248)
+. +.|++||.. +....+.. ...+ .+++|+|++++|++++. |+.+++|++.+....... .++..++
T Consensus 233 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~ 306 (343)
T 3lrv_A 233 CD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALC 306 (343)
T ss_dssp ES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECC
T ss_pred eC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEe
Confidence 94 599999943 33222221 1223 36999999999999988 999999999766542211 5677888
Q ss_pred EcC---CCcEEEEEcCCCeEEEEE
Q psy16005 223 FSP---SNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 223 ~s~---~~~~l~~~~~d~~i~vw~ 243 (248)
|+| +.+.+++++.|+.+.++-
T Consensus 307 ~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 307 LQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp C----CCCCEEEEEEETTEEEEEE
T ss_pred cCccccccceeEEEecCCceEEEE
Confidence 888 888899888888888764
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5.2e-28 Score=186.14 Aligned_cols=217 Identities=12% Similarity=0.079 Sum_probs=168.0
Q ss_pred CcEEEEeCCCCCEEEE-eC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC-ceeee
Q psy16005 19 QPIVLGGDPKGKNFLY-TN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK-EHILK 95 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~-~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~ 95 (248)
.+..+++.++++.++. ++ ++.|++||..+++.+..+. +...|.+++|+++. ++++ .++.|++||+.++ +.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~-- 133 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRI-- 133 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBS--
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceee--
Confidence 4778889999888865 43 7899999999999888885 67799999999864 3333 4789999999987 433
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEE--eCC-cEEEEEccC--------------------------CCCCceeEeCCCCC
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISI--VEN-GAKVSSLPI--------------------------DYEPSSISLDHEHG 146 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~--~~~-~~~i~~~~~--------------------------~~~~~~~~~~~~~~ 146 (248)
..+.. +...+++++ .+++++ +.+ .+++|++.. ...+.+++|+|+++
T Consensus 134 ~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~ 208 (355)
T 3vu4_A 134 TDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD 208 (355)
T ss_dssp SCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS
T ss_pred EEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC
Confidence 22222 344566776 666664 444 469999864 23467899999999
Q ss_pred EEEEEcCCCe-EEEEE--CCceeeeec---ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc---------
Q psy16005 147 LVAVGGADSK-ISIVE--NGAKVSSLP---IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE--------- 211 (248)
Q Consensus 147 ~~~~~~~~~~-i~~~~--~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--------- 211 (248)
++++++.|++ |++|| .++.+..+. +...+.+++|+|++++|++++.|+.|++||++.........
T Consensus 209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 9999999998 99999 567777776 67789999999999999999999999999998654221110
Q ss_pred -------------ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 212 -------------LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 212 -------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.........++|+|++++|++++.||.+++|++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 01122347799999999999999999999999754
No 124
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=8.4e-27 Score=182.88 Aligned_cols=212 Identities=10% Similarity=0.105 Sum_probs=161.8
Q ss_pred CCEEEEeC-C------cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCC---eEEEEECCCCceeeeeec
Q psy16005 29 GKNFLYTN-G------NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG---KVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 29 ~~~l~~~~-~------~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~ 98 (248)
+..+++++ + +.|++||++. ...+.+..|...+.+++|+|+|+.|++++.++ .|++||+.+++.. .+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---~l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QV 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---EE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---Ee
Confidence 55555543 2 7999999874 45666778999999999999999999998875 9999999988753 45
Q ss_pred cCCCCCeeEEEEecCCCEEEE-EeCCc---EEEEEccC---------CCCCceeEeCCCCCEEEEEcC-CC--eEEEEEC
Q psy16005 99 HPIGGPIKDIAWSPDNQRMIS-IVENG---AKVSSLPI---------DYEPSSISLDHEHGLVAVGGA-DS--KISIVEN 162 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~-~~~~~---~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~--~i~~~~~ 162 (248)
..|...+.+++|+|||+.|+. ++.++ +.+|++.. ...+..++|+|+++.+++++. ++ .|++||.
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 567788999999999998884 44433 57777643 234567899999998888775 44 6777782
Q ss_pred -Cceeeeec-ccCCCceEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 163 -GAKVSSLP-IDYEPSSISLDHEHGLVAVGGAD---SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 163 -~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
+.....+. ....+.+++|+|+|++|++++.+ ..|++||+.+++.. .+. .+. .+.+++|+|||++|++++.++
T Consensus 299 ~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 299 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-STF-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC-CSS-SCEEEEECTTSSEEEEEEEET
T ss_pred CCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec-CCC-CcCCeEEcCCCCEEEEEEcCC
Confidence 22233332 34456789999999999988764 58999999988763 222 343 899999999999999888776
Q ss_pred ---eEEEEECCCC
Q psy16005 238 ---KVVLYRVPDF 247 (248)
Q Consensus 238 ---~i~vw~~~~~ 247 (248)
.|++||+..+
T Consensus 376 ~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 376 MGSVLNLVSTDGR 388 (415)
T ss_dssp TEEEEEEEETTSC
T ss_pred CccEEEEEECCCC
Confidence 8999998754
No 125
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=1.4e-26 Score=175.17 Aligned_cols=191 Identities=17% Similarity=0.206 Sum_probs=152.9
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee----------------------------------------
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI---------------------------------------- 53 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~---------------------------------------- 53 (248)
.|...|.+++|+|++++|++|+ |+.|++|++.+++.+..
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~ 144 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 144 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE
Confidence 5778899999999999999987 99999999987764433
Q ss_pred -eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee--eeeeccCCCCCeeEEEEecCCCEEEE-E--eCCc-EE
Q psy16005 54 -YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDNQRMIS-I--VENG-AK 126 (248)
Q Consensus 54 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~-~--~~~~-~~ 126 (248)
+.+|...+..+.+++++++|++++.||.|++||+++++.. .......+...|.+++++|++..++. + +.++ ++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 2356677888899999999999999999999999876532 22344567789999999997765442 2 3333 68
Q ss_pred EEEccC---------CCCCceeEeCCCCCEEEEE--cCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcC
Q psy16005 127 VSSLPI---------DYEPSSISLDHEHGLVAVG--GADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGA 192 (248)
Q Consensus 127 i~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~ 192 (248)
+|+... ...+..+.+.+++..++++ +.|+.|++|| .++.+..+. |...+.+++|+|++++|++|+.
T Consensus 225 lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 225 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 998753 3456778889998877765 4799999999 667777776 5677899999999999999999
Q ss_pred CCcEEEEEcCCCC
Q psy16005 193 DSKVHIYELNNKS 205 (248)
Q Consensus 193 d~~v~i~d~~~~~ 205 (248)
||+|+|||+....
T Consensus 305 D~~v~iWd~~~~d 317 (318)
T 4ggc_A 305 DETLRLWRCFELD 317 (318)
T ss_dssp TTEEEEECCSCCC
T ss_pred CCeEEEEECCCCC
Confidence 9999999987543
No 126
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=2.3e-26 Score=175.09 Aligned_cols=227 Identities=13% Similarity=0.124 Sum_probs=169.3
Q ss_pred cCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCce-eeeeecCCcceEEEEECcCCcEEEEEccCC---eEEEEECCCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAI-SDIYTEHSCAVNVAKYSPSGFYIASGDISG---KVRIWDTVNK 90 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~ 90 (248)
...+ +++|+|+|+++++++ ++.|++||+.+++. ...+..+..+..+++|+|++++++++..++ .|.+||+.++
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence 3445 899999999776654 78999999999887 667766666666699999999999655553 8999999988
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEe-C-Cc-EEEEEccC--------------CCCCceeEeCCCCCEE-EEEc
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIV-E-NG-AKVSSLPI--------------DYEPSSISLDHEHGLV-AVGG 152 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~~-~~i~~~~~--------------~~~~~~~~~~~~~~~~-~~~~ 152 (248)
+.+. .+. ....+.+++|+|+|++++++. . +. +.+|++.. ...+..++++|+++.+ +++.
T Consensus 119 ~~~~--~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 195 (331)
T 3u4y_A 119 KFIS--TIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL 195 (331)
T ss_dssp EEEE--EEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET
T ss_pred CeEE--EEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC
Confidence 7543 333 235578999999998776664 3 55 78887642 2446788999999955 4555
Q ss_pred CCCeEEEEE--CCce---eeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCC--Cccc------ccCCcCe
Q psy16005 153 ADSKISIVE--NGAK---VSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLS--PKAE------LDHLGPV 218 (248)
Q Consensus 153 ~~~~i~~~~--~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~--~~~~------~~~~~~v 218 (248)
.++.|.+|| .++. +..++....+..++|+|||+++++++ .++.|.+||+.+++.. .... .......
T Consensus 196 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 196 IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA 275 (331)
T ss_dssp TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC
T ss_pred CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccc
Confidence 789999999 4565 66777777889999999999777665 4778999999987761 1111 0111223
Q ss_pred EEEEEcCCCcEEEEEc-CCCeEEEEECCCC
Q psy16005 219 TDCSFSPSNEYLVASD-AHRKVVLYRVPDF 247 (248)
Q Consensus 219 ~~~~~s~~~~~l~~~~-~d~~i~vw~~~~~ 247 (248)
..++|+|||++|++++ .++.|.+||+.+.
T Consensus 276 ~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 276 NQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred cceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 5689999999886654 5679999999764
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=3.3e-26 Score=179.47 Aligned_cols=208 Identities=13% Similarity=0.190 Sum_probs=161.8
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-C---cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCC--eEEEEEC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-G---NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISG--KVRIWDT 87 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~---~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg--~i~iwd~ 87 (248)
.|.+.+.+++|+|||+.|++++ + ..|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.++ .|++||+
T Consensus 176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~ 254 (415)
T 2hqs_A 176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 254 (415)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC
Confidence 3677899999999999999886 4 39999999988775 4667888999999999999887 666655 4999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-c---EEEEEccCC---------CCCceeEeCCCCCEEEEEcCC
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-G---AKVSSLPID---------YEPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~---~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 154 (248)
.+++. ..+..|...+.+++|+|||++|++++.+ + +.+|++... ..+..++|+|+++++++++.+
T Consensus 255 ~~~~~---~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 255 ASGQI---RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp TTCCE---EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred CCCCE---EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECc
Confidence 88764 3556678899999999999999988853 3 455565422 234568999999999887764
Q ss_pred ---CeEEEEEC-CceeeeecccCCCceEEEcCCCCEEEEEcCCC---cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC
Q psy16005 155 ---SKISIVEN-GAKVSSLPIDYEPSSISLDHEHGLVAVGGADS---KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 155 ---~~i~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
..|++||. ......+.....+.+++|+|+|++|++++.++ .|++||+..+.. .. ...|.+.|.+++|+|..
T Consensus 332 ~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~-~~-l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 332 GGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-AR-LPATDGQVKFPAWSPYL 409 (415)
T ss_dssp SSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EE-CCCSSSEEEEEEECCCC
T ss_pred CCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE-EE-eeCCCCCCcCCcccccc
Confidence 58999992 23334444444788999999999999988776 799999975543 23 33688899999999975
Q ss_pred c
Q psy16005 228 E 228 (248)
Q Consensus 228 ~ 228 (248)
.
T Consensus 410 ~ 410 (415)
T 2hqs_A 410 H 410 (415)
T ss_dssp C
T ss_pred c
Confidence 4
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=6.2e-27 Score=182.48 Aligned_cols=188 Identities=11% Similarity=0.112 Sum_probs=143.7
Q ss_pred ccccCCcEEEEeCC--------CCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCC-cEEEEEccCCeEE
Q psy16005 14 RTQRGQPIVLGGDP--------KGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVR 83 (248)
Q Consensus 14 ~~~~~~v~~~~~s~--------~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~ 83 (248)
.+|.+.|.+++|+| |+++|++++ |++|+|||+.++.....+..|..++.+++|+|++ .+|++++.||+|+
T Consensus 133 ~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~ 212 (393)
T 4gq1_A 133 SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIR 212 (393)
T ss_dssp TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEE
Confidence 46999999999998 889999987 9999999999888887788899999999999987 5899999999999
Q ss_pred EEECCCCceeee-----------------------eeccCCCCCeeEEEEe-cCCCEEEEEeCCc-EEEEEccCCCC---
Q psy16005 84 IWDTVNKEHILK-----------------------NEFHPIGGPIKDIAWS-PDNQRMISIVENG-AKVSSLPIDYE--- 135 (248)
Q Consensus 84 iwd~~~~~~~~~-----------------------~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~-~~i~~~~~~~~--- 135 (248)
+||+++++.... ....+|...+.++.|+ +|++.+++++.++ +++|++.....
T Consensus 213 ~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~ 292 (393)
T 4gq1_A 213 IFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE 292 (393)
T ss_dssp EEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------
T ss_pred EEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce
Confidence 999987653211 1123577889999987 7999999999877 49999743211
Q ss_pred -------------------------CceeEeCC--CCCEEEEEcCCCeEEEEE--CCceee-eecccCCCceEEEcCCCC
Q psy16005 136 -------------------------PSSISLDH--EHGLVAVGGADSKISIVE--NGAKVS-SLPIDYEPSSISLDHEHG 185 (248)
Q Consensus 136 -------------------------~~~~~~~~--~~~~~~~~~~~~~i~~~~--~~~~~~-~~~~~~~~~~~~~s~~~~ 185 (248)
.....+.+ ++.++++++.|+.|++|| .++... ...+...+.+++|+|||+
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~ 372 (393)
T 4gq1_A 293 ISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGS 372 (393)
T ss_dssp -----------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSS
T ss_pred EeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCC
Confidence 11122322 344677888999999999 344333 345677899999999999
Q ss_pred EEEEEcCCCcEEEEEcC
Q psy16005 186 LVAVGGADSKVHIYELN 202 (248)
Q Consensus 186 ~l~~~~~d~~v~i~d~~ 202 (248)
+||+++.+| +.+|.+.
T Consensus 373 ~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 373 HLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEEESSE-EEEEEEG
T ss_pred EEEEEeCCC-eEEEEEe
Confidence 999998776 6676654
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=5.1e-27 Score=196.66 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=173.3
Q ss_pred cCCcEEEEeCCCCCEEEEeC--Cc-----EEEEEecCCCceeeeeecCCc------------------------ceEEEE
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GN-----SVIIRNIENPAISDIYTEHSC------------------------AVNVAK 65 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~-----~v~v~~~~~~~~~~~~~~~~~------------------------~v~~~~ 65 (248)
...+.+++|||||++|++++ ++ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 45799999999999999875 66 899999999887766654432 378999
Q ss_pred ECcCCcEEEEEccCCeEEEEECCCC---ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC--------
Q psy16005 66 YSPSGFYIASGDISGKVRIWDTVNK---EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY-------- 134 (248)
Q Consensus 66 ~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~-------- 134 (248)
|||||++|++++. +.|++||+.++ +. ..+..+...+..++|+|||++|++++++.+.+|++....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~---~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV---RQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSC---CBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceE---EEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCC
Confidence 9999999999886 99999999887 42 345567788999999999999999998888999875321
Q ss_pred -C-----------------CceeEeCCCCCEEEEEcCCC---------------------------------eEEEEE--
Q psy16005 135 -E-----------------PSSISLDHEHGLVAVGGADS---------------------------------KISIVE-- 161 (248)
Q Consensus 135 -~-----------------~~~~~~~~~~~~~~~~~~~~---------------------------------~i~~~~-- 161 (248)
. +..+.|+|+|+.|++++.|+ .|.+||
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 1 36789999999999887654 778888
Q ss_pred C-Cceeeee---cccCCCceEEEcCCCCEEEEEcC-----CCcEEEEEcCCCCCCCcccccCCc---CeEEEEEcCCCcE
Q psy16005 162 N-GAKVSSL---PIDYEPSSISLDHEHGLVAVGGA-----DSKVHIYELNNKSLSPKAELDHLG---PVTDCSFSPSNEY 229 (248)
Q Consensus 162 ~-~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~-----d~~v~i~d~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~ 229 (248)
. ++..... .+...+..++| |||++|++++. +..|++||+.+++........... .+..++|+|||++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 3 3332222 13345688999 99999987653 567999999998765433321222 4568999999998
Q ss_pred EEEEcCCCeEEEEECC
Q psy16005 230 LVASDAHRKVVLYRVP 245 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~ 245 (248)
+++++.||.++||.++
T Consensus 351 ~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 351 LWSSERTGFQHLYRID 366 (741)
T ss_dssp EEEECTTSSCEEEEEC
T ss_pred EEEecCCCccEEEEEc
Confidence 8899999988888764
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=9.2e-26 Score=182.21 Aligned_cols=237 Identities=10% Similarity=0.094 Sum_probs=176.5
Q ss_pred ecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEec--CCCceeeeeecCCcceEEEEECc----CCcEEEEEcc-C
Q psy16005 8 IFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNI--ENPAISDIYTEHSCAVNVAKYSP----SGFYIASGDI-S 79 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~--~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~-d 79 (248)
++..++.++. +.+++|+|||++|++++ ++.|.+||+ .+++.+..+. +...+..++|+| +|+++++++. +
T Consensus 171 ~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~ 247 (543)
T 1nir_A 171 IVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWP 247 (543)
T ss_dssp EEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred EEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccC
Confidence 3444443332 88999999999999987 899999999 7888888776 455679999999 9999999885 8
Q ss_pred CeEEEEECCCCceeeeeeccC--------C-CCCeeEEEEecCCCEEEEEeCC--cEEEEEccC-----------CCCCc
Q psy16005 80 GKVRIWDTVNKEHILKNEFHP--------I-GGPIKDIAWSPDNQRMISIVEN--GAKVSSLPI-----------DYEPS 137 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~--------~-~~~v~~~~~~~~~~~l~~~~~~--~~~i~~~~~-----------~~~~~ 137 (248)
++|.+||..+++.+......+ | ...+..+.++|++..+++...+ .+.+|++.. ...+.
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~ 327 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLH 327 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCC
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCcc
Confidence 999999999888654433321 2 2378899999988877666533 356777543 23466
Q ss_pred eeEeCCCCCEEEE-EcCCCeEEEEE--CCceeeeecccCCC---ceEE-EcCC-CCEEEEEc-CCCcEEEEEcCC-----
Q psy16005 138 SISLDHEHGLVAV-GGADSKISIVE--NGAKVSSLPIDYEP---SSIS-LDHE-HGLVAVGG-ADSKVHIYELNN----- 203 (248)
Q Consensus 138 ~~~~~~~~~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~~---~~~~-~s~~-~~~l~~~~-~d~~v~i~d~~~----- 203 (248)
.+.|+|+++++++ +..+++|.+|| +++.+..+.....+ .... ++|+ +..++++. .|++|.+||+.+
T Consensus 328 ~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~ 407 (543)
T 1nir_A 328 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 407 (543)
T ss_dssp CEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred CceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence 7899999997665 45689999999 56666666532211 2233 4677 55666665 589999999988
Q ss_pred --CCCCCcccccCCcCeEEEEEcCCCcEEEEEc-------CCCeEEEEECCCCC
Q psy16005 204 --KSLSPKAELDHLGPVTDCSFSPSNEYLVASD-------AHRKVVLYRVPDFE 248 (248)
Q Consensus 204 --~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~d~~i~vw~~~~~~ 248 (248)
.+.+..+. .|...+..++|+|++++|++++ .+++|.+||+.+++
T Consensus 408 ~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 408 YAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp TBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred hcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 45544443 5777788999999999999987 26799999999875
No 131
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=1.3e-27 Score=199.75 Aligned_cols=226 Identities=9% Similarity=0.011 Sum_probs=168.3
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCc---ceEEEEECcCCcEEEEEccC---------CeEEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC---AVNVAKYSPSGFYIASGDIS---------GKVRIW 85 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d---------g~i~iw 85 (248)
..+.+++|+|||++++++.|+.|++||+.+++....+..|.. .|.+++|||||++|++++.+ +.+.+|
T Consensus 17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 457789999999988775699999999999988777766654 48999999999999998764 788999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC----------CC------------------Cc
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID----------YE------------------PS 137 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~----------~~------------------~~ 137 (248)
|+.+++.........|...+..++|+|||+.|++++.+.+.+|++... .. ..
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence 999887522223334555688999999999999999988888886432 11 15
Q ss_pred eeEeCCCCCEEEEEcCCC----------------------------------eEEEEE--CCceeeeecc-------cCC
Q psy16005 138 SISLDHEHGLVAVGGADS----------------------------------KISIVE--NGAKVSSLPI-------DYE 174 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~----------------------------------~i~~~~--~~~~~~~~~~-------~~~ 174 (248)
.+.|+|+|+.|++++.++ .|++|| .++....+.. ...
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 256 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY 256 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence 799999999999876543 788898 3333344432 234
Q ss_pred CceEEEcCCCCEEEEEcC----CCcEEEEEcCCCCCCCcccccCCcCe----EEEEEcCCCcEEEEE--cCCC------e
Q psy16005 175 PSSISLDHEHGLVAVGGA----DSKVHIYELNNKSLSPKAELDHLGPV----TDCSFSPSNEYLVAS--DAHR------K 238 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~~----d~~v~i~d~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~--~~d~------~ 238 (248)
+..++|+|||+++++... +..|++||+.+++........+...+ ..++|+|||+.|+.. ..++ .
T Consensus 257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 678999999998877643 35799999998876544332344444 378999999977754 4566 5
Q ss_pred EEEEE
Q psy16005 239 VVLYR 243 (248)
Q Consensus 239 i~vw~ 243 (248)
|.+||
T Consensus 337 l~~~d 341 (723)
T 1xfd_A 337 ITVSS 341 (723)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 66677
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1e-25 Score=172.00 Aligned_cols=228 Identities=13% Similarity=0.134 Sum_probs=159.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--CcEEEEEecC--CCce--eeeeecCCcceEEEEECcCCcEEEEEc-cCCeEEEEECC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIE--NPAI--SDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTV 88 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~--~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 88 (248)
+...+.+++|+|+|++|++++ ++.|.+|+++ +++. ...+..+. .+.+++|+|++++|++++ .++.|.+||+.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 456788999999999888875 3899999987 5543 33444333 788999999999886665 48899999995
Q ss_pred CCcee-eeeeccCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEccCC----------------CCCceeEeCCCCCEEE
Q psy16005 89 NKEHI-LKNEFHPIGGPIKDIAWSPDNQRMISIV--ENGAKVSSLPID----------------YEPSSISLDHEHGLVA 149 (248)
Q Consensus 89 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~~i~~~~~~----------------~~~~~~~~~~~~~~~~ 149 (248)
.+... ....+. ....+.+++|+|+++++++++ ++.+.+|++... ..+..++++|++++++
T Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~ 193 (343)
T 1ri6_A 115 DGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 193 (343)
T ss_dssp TTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence 33211 112233 335688999999999888876 445688887541 1345688999999665
Q ss_pred E-EcCCCeEEEEECC----ce--eeeec---c----cCCCceEEEcCCCCEEEEE-cCCCcEEEEEcC--CCCCCCcccc
Q psy16005 150 V-GGADSKISIVENG----AK--VSSLP---I----DYEPSSISLDHEHGLVAVG-GADSKVHIYELN--NKSLSPKAEL 212 (248)
Q Consensus 150 ~-~~~~~~i~~~~~~----~~--~~~~~---~----~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~--~~~~~~~~~~ 212 (248)
+ +..++.+.+|+.. +. ..... . ...+..++|+|++++|+++ ..++.|.+||+. +++.......
T Consensus 194 ~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 194 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence 4 4588999999942 11 11111 1 1134479999999977754 578999999998 3322211111
Q ss_pred cCCcCeEEEEEcCCCcEEEEEc-CCCeEEEEECC
Q psy16005 213 DHLGPVTDCSFSPSNEYLVASD-AHRKVVLYRVP 245 (248)
Q Consensus 213 ~~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~ 245 (248)
.....+..++|+|+|++|++++ .++.+.+|+++
T Consensus 274 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 274 PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred cCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 2223488999999999888887 57999999543
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=1.5e-26 Score=172.92 Aligned_cols=218 Identities=15% Similarity=0.174 Sum_probs=162.9
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCC-CceeeeeecC-CcceEEEEECcCCcEEEEEc--cCCeEEEE--ECCC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-PAISDIYTEH-SCAVNVAKYSPSGFYIASGD--ISGKVRIW--DTVN 89 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~--~dg~i~iw--d~~~ 89 (248)
|.+.+.+++|+|+|++|+++.++.|++||+.+ ++.......+ ...+.+++|+|++++|++++ .++...|| +..+
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 119 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG 119 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence 67789999999999999999999999999998 8777666555 36789999999999999988 33445554 5555
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEE-EEeCC-cEEEEEccC-----------CCCCceeEeCCCCCEEEEEc-CCC
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMI-SIVEN-GAKVSSLPI-----------DYEPSSISLDHEHGLVAVGG-ADS 155 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~ 155 (248)
+.. ..+..+ ..+..++|+|+++.|+ ++..+ .+.+|.++. ...+..+.|+|+++.++.++ .++
T Consensus 120 ~~~---~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 195 (297)
T 2ojh_A 120 GTP---RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 195 (297)
T ss_dssp CCC---EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred Cce---EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCC
Confidence 442 233332 3488999999999887 44444 458888642 23456789999999887665 588
Q ss_pred eEEEEE---CCceeeeec-ccCCCceEEEcCCCCEEEEEcCC-----------CcEEEEEcCCCCCCCccc-ccCCcCeE
Q psy16005 156 KISIVE---NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGAD-----------SKVHIYELNNKSLSPKAE-LDHLGPVT 219 (248)
Q Consensus 156 ~i~~~~---~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d-----------~~v~i~d~~~~~~~~~~~-~~~~~~v~ 219 (248)
.+.+|+ .+.....+. +...+..++|+|++++|++++.+ +.|++||+.+++...... .+|...+.
T Consensus 196 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 275 (297)
T 2ojh_A 196 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMN 275 (297)
T ss_dssp SCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSC
T ss_pred CccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccc
Confidence 888887 344444443 34456789999999999888765 569999999877533322 25778899
Q ss_pred EEEEcCCCcEEEEEcCCC
Q psy16005 220 DCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~ 237 (248)
.++|+|++++|++++.+.
T Consensus 276 ~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 276 SPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCBCTTSSEEEEEEECC
T ss_pred cceECCCCCEEEEEEecc
Confidence 999999999998887653
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=5.8e-25 Score=168.62 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=172.8
Q ss_pred cCCcEEEEeCCCCCEEEEeC--------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEEC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDT 87 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~ 87 (248)
...+..++|+|+|+.+++++ ++.|.+||..+++....+.. ...+.+++|+|++++++ +...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 35678899999999888875 56899999999988887754 34578899999998554 5566799999999
Q ss_pred CCCceeeeeeccCCC-------CCeeEEEEecCCCEEEEEe---CCcEEEEEcc----------CCCCCceeEeCCCCCE
Q psy16005 88 VNKEHILKNEFHPIG-------GPIKDIAWSPDNQRMISIV---ENGAKVSSLP----------IDYEPSSISLDHEHGL 147 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~---~~~~~i~~~~----------~~~~~~~~~~~~~~~~ 147 (248)
.+++........... ..+.+++|+|++++++++. +..+.+|+.. ....+..+.++|+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 998865433332111 1268899999999888776 2336777764 2334788999999999
Q ss_pred EEEEcCCCeEEEEE--CCceeeeecc-----cCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 148 VAVGGADSKISIVE--NGAKVSSLPI-----DYEPSSISLDHEHGLVAVGGA-DSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 148 ~~~~~~~~~i~~~~--~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
++++..++.+.+|| .++....+.. ...+..++++|+++++++++. ++.|.+||..+++.......+. ..
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~ 275 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SL 275 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---Cc
Confidence 99999999999999 4555555543 223567999999997777665 5899999999988765554322 25
Q ss_pred EEEEcCCCcEEEEEc-CCCeEEEEECCCCC
Q psy16005 220 DCSFSPSNEYLVASD-AHRKVVLYRVPDFE 248 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~-~d~~i~vw~~~~~~ 248 (248)
.++|+|++++++.++ .++.|.+||+.+++
T Consensus 276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred eEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 699999999766554 68999999998763
No 135
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2.7e-25 Score=165.90 Aligned_cols=215 Identities=6% Similarity=-0.016 Sum_probs=154.4
Q ss_pred cEEEEeCCCCC---EEEEeCCcEEEEEecCCC---ceeeeeecCCc-------------------------ceEEEEECc
Q psy16005 20 PIVLGGDPKGK---NFLYTNGNSVIIRNIENP---AISDIYTEHSC-------------------------AVNVAKYSP 68 (248)
Q Consensus 20 v~~~~~s~~~~---~l~~~~~~~v~v~~~~~~---~~~~~~~~~~~-------------------------~v~~~~~s~ 68 (248)
+.++.|-.-|- .++++....|++|+..++ +..+.+..|.. .|.+++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence 44555655443 566677999999999888 66666666654 455677777
Q ss_pred C----CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCC-
Q psy16005 69 S----GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDH- 143 (248)
Q Consensus 69 ~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~- 143 (248)
+ ++.+++++. .+++|++.+++.+ .....+|...|..++++|+|+.+.... -+...+..++|++
T Consensus 122 d~~~~~~~l~s~g~--~~~v~~l~~g~lv-~ss~~g~d~~V~~~~~s~dG~~~~s~~---------~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 122 DDESEKQVLLKSGN--IKAVLGLTKRRLV-SSSGTLSDQQVEVMTFAEDGGGKENQF---------LMPPEETILTFAEV 189 (356)
T ss_dssp ----CCEEEEEEEE--EEEEEEETTTEEE-EEESSSTTCEEEEEEECTTSCEEEEEE---------ECCCSSCEEEEEEE
T ss_pred CccccccEEEeCCC--eEEEEecCCCcEE-EecccCCCCcEEEEEECCCCceeeeec---------cCCCceeeEEeecc
Confidence 7 778888764 4888999876644 233567899999999999998776432 2345566778887
Q ss_pred --CCCEEEEEcCCCeEEEEE--CCceeeeeccc----CCCceEEEcCCCCEE------------EEEcCCCcEEEEEcCC
Q psy16005 144 --EHGLVAVGGADSKISIVE--NGAKVSSLPID----YEPSSISLDHEHGLV------------AVGGADSKVHIYELNN 203 (248)
Q Consensus 144 --~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~----~~~~~~~~s~~~~~l------------~~~~~d~~v~i~d~~~ 203 (248)
++.++++++.|++|++|| +++.+..+..+ ..+.+++|+|+|.++ ++|+.|++|++||..+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 779999999999999999 67888888632 245677999999876 5677899999999999
Q ss_pred CCCCCcc----cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 204 KSLSPKA----ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 204 ~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
++.+... ..+|...+.+..++ +.++++++.|++|+|||+.+++
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCS
T ss_pred CEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCc
Confidence 8765433 23565555544444 7889999999999999999875
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=2.2e-25 Score=166.55 Aligned_cols=207 Identities=14% Similarity=0.048 Sum_probs=158.0
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC-CceeeeeeccCC-CCCeeEEEEecCC
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-KEHILKNEFHPI-GGPIKDIAWSPDN 114 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~ 114 (248)
++.|++||+.+++... +..|...+.+++|+|++++|++++ ++.|++||+.+ ++.. .....+ ...+.+++|+|++
T Consensus 21 ~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE--KVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEECTTS
T ss_pred ceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce--EeccccccccccceEECCCC
Confidence 7899999999887664 456888999999999999999976 78999999998 7643 233333 4678999999999
Q ss_pred CEEEEEeCC---cEEEEEccC----------CCCCceeEeCCCCCEEE-EEcCCCeEEEEE---C-CceeeeecccCCCc
Q psy16005 115 QRMISIVEN---GAKVSSLPI----------DYEPSSISLDHEHGLVA-VGGADSKISIVE---N-GAKVSSLPIDYEPS 176 (248)
Q Consensus 115 ~~l~~~~~~---~~~i~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~---~-~~~~~~~~~~~~~~ 176 (248)
++|++++.+ ...+|.++. ...+..+.|+|+++.++ ++..++.+.+|+ . ++..........+.
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRND 176 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEE
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccc
Confidence 999999843 356666542 22355678999999877 677889888887 2 23333333456678
Q ss_pred eEEEcCCCCEEEEEc-CCCcEEEEEcCC-CCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC-----------CeEEEEE
Q psy16005 177 SISLDHEHGLVAVGG-ADSKVHIYELNN-KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH-----------RKVVLYR 243 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~-~d~~v~i~d~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~i~vw~ 243 (248)
+++|+|++++|++++ .++.+++|++.. +... .....|...+..++|+|+|++|++++.+ +.|++||
T Consensus 177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV-ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTSSCE-EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred cceECCCCCEEEEEecCCCCccEEEECCCCCCc-EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 999999999887765 588999999863 3333 2333577789999999999999888765 5699999
Q ss_pred CCCCC
Q psy16005 244 VPDFE 248 (248)
Q Consensus 244 ~~~~~ 248 (248)
+.+++
T Consensus 256 ~~~~~ 260 (297)
T 2ojh_A 256 MDGGN 260 (297)
T ss_dssp TTSCS
T ss_pred cCCCC
Confidence 98763
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.95 E-value=4.2e-25 Score=169.32 Aligned_cols=230 Identities=13% Similarity=0.183 Sum_probs=157.4
Q ss_pred ccCCcEEEEeCCCCCEEEEeC----CcEEEEEecCCCce--eeeeecCCcceEEEEECcCCcEEEEEc-cCCeEEEEECC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN----GNSVIIRNIENPAI--SDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTV 88 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 88 (248)
+...+..++|+|||+ |++++ ++.|++|++.+++. +..+..+...+..++|+|+|++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999 55443 47999999977653 334445677788999999999888877 67999999996
Q ss_pred C-CceeeeeeccC---------CCCCeeEEEEecCCCEEEEEeCC-cEEEEEccCC--------------CCCceeEeCC
Q psy16005 89 N-KEHILKNEFHP---------IGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPID--------------YEPSSISLDH 143 (248)
Q Consensus 89 ~-~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~~--------------~~~~~~~~~~ 143 (248)
. +.......+.. ....+.+++|+|+|+.+++...+ .+.+|++... ..+..++|+|
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 3 33221122211 12348889999999944444333 4688887621 1345689999
Q ss_pred CCCEEEE-EcCCCeEEEEEC----Cce--eeeecc-c------CCCceEEEcCCCCEEEE-EcCCCcEEEEEcCCC-C--
Q psy16005 144 EHGLVAV-GGADSKISIVEN----GAK--VSSLPI-D------YEPSSISLDHEHGLVAV-GGADSKVHIYELNNK-S-- 205 (248)
Q Consensus 144 ~~~~~~~-~~~~~~i~~~~~----~~~--~~~~~~-~------~~~~~~~~s~~~~~l~~-~~~d~~v~i~d~~~~-~-- 205 (248)
+++++++ ...++.+.+|+. ++. ...+.. . ..+..++|+|||++|++ ...++.|.+|++... .
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9995555 567889999982 222 112211 1 23677999999998754 456899999999732 2
Q ss_pred CCCcccccCCcCeEEEEEcCCCcEEEEEcC-CCeEEEEEC--CCC
Q psy16005 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDA-HRKVVLYRV--PDF 247 (248)
Q Consensus 206 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~vw~~--~~~ 247 (248)
..... ..+...+..++|+|||++|++++. ++.+.+|++ +++
T Consensus 277 ~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 277 LIQQI-STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp EEEEE-ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EeEEE-ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 11111 134556899999999998888765 489999954 454
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=9.5e-25 Score=166.18 Aligned_cols=222 Identities=9% Similarity=-0.007 Sum_probs=162.3
Q ss_pred EEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc-CCeEEEEECCCCceeeeeecc
Q psy16005 23 LGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFH 99 (248)
Q Consensus 23 ~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~ 99 (248)
..|.++++.++.+ . ++.|.+||+.+++....+..+...+ +++|+|+++++++++. ++.|.+||+.+++.. ...+.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~ 80 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQ 80 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEecc
Confidence 3466666665544 3 8899999999999888777666667 9999999997766554 889999999988751 23444
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCC----cEEEEEccC---------CCCCceeEeCCCCCEEE-EEcCCCe-EEEEECC-
Q psy16005 100 PIGGPIKDIAWSPDNQRMISIVEN----GAKVSSLPI---------DYEPSSISLDHEHGLVA-VGGADSK-ISIVENG- 163 (248)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~~----~~~i~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~-i~~~~~~- 163 (248)
.+..+..+++|+|+++++++...+ .+.+|++.. ...+..++++|+++.++ +...++. +.+|+..
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 455555559999999999966655 478888753 34567889999998554 4456677 9999822
Q ss_pred --ce----eeeecccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCC---CCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 164 --AK----VSSLPIDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSL---SPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 164 --~~----~~~~~~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
.. ...+.....+..++|+|+|++++++ ..++.|++||+.+++. ..... ....+..++|+|||++|+.+
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEE
Confidence 12 1223445567899999999966554 4688999999998876 43333 44677899999999987666
Q ss_pred c-CCCeEEEEECCCCC
Q psy16005 234 D-AHRKVVLYRVPDFE 248 (248)
Q Consensus 234 ~-~d~~i~vw~~~~~~ 248 (248)
+ .++.|.+||+.+++
T Consensus 239 ~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGT 254 (331)
T ss_dssp CSSEEEEEEEETTTTE
T ss_pred EcCCCEEEEEECCCCc
Confidence 4 57889999998763
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=4.1e-25 Score=184.25 Aligned_cols=229 Identities=12% Similarity=0.136 Sum_probs=169.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCC-----CceeeeeecCCcc--------------eEEEEECcCCcEEEEE
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTEHSCA--------------VNVAKYSPSGFYIASG 76 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~-----~~~~~~~~~~~~~--------------v~~~~~s~~~~~l~~~ 76 (248)
+.+.+.+++|||||+.|+++.++.|++|++.+ ++..+....+... +.++.|||||++|+++
T Consensus 119 ~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~ 198 (706)
T 2z3z_A 119 TNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY 198 (706)
T ss_dssp CTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred CcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence 34567789999999999998899999999998 7766544444333 4789999999999998
Q ss_pred c---------------------------------cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC
Q psy16005 77 D---------------------------------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123 (248)
Q Consensus 77 ~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 123 (248)
+ .+..|.+||+.+++.........|...+..++|+|||+.|++++.+
T Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 278 (706)
T 2z3z_A 199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN 278 (706)
T ss_dssp EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC
T ss_pred EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC
Confidence 7 3467999999988754322223566789999999999999887644
Q ss_pred ------cEEEEEccCCC---------------CCceeEeCC--CCCEEEEEcCCCeEEEEE---CCceeeeecc-cCCCc
Q psy16005 124 ------GAKVSSLPIDY---------------EPSSISLDH--EHGLVAVGGADSKISIVE---NGAKVSSLPI-DYEPS 176 (248)
Q Consensus 124 ------~~~i~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~~~i~~~~---~~~~~~~~~~-~~~~~ 176 (248)
.+.+|++.... .+..+.|+| ++++++++..++.+.+|. .+.....+.. ...+.
T Consensus 279 ~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 279 RAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT 358 (706)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred CCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE
Confidence 35777765430 124578999 999999998898888876 4555555543 34455
Q ss_pred e-EEEcCCCCEEEEEcC-CC----cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC----CeEEEEECCC
Q psy16005 177 S-ISLDHEHGLVAVGGA-DS----KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH----RKVVLYRVPD 246 (248)
Q Consensus 177 ~-~~~s~~~~~l~~~~~-d~----~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~vw~~~~ 246 (248)
. ++|+|+++.|++++. ++ .|+.||+.+++. ..+ .+...+.+++|+|||++++....+ +.+++||+.+
T Consensus 359 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l--~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 359 NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL--TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES--CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec--cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 5 799999997766554 44 577777777653 222 366779999999999988876443 5699999987
Q ss_pred C
Q psy16005 247 F 247 (248)
Q Consensus 247 ~ 247 (248)
+
T Consensus 436 ~ 436 (706)
T 2z3z_A 436 G 436 (706)
T ss_dssp C
T ss_pred C
Confidence 5
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.94 E-value=1.2e-26 Score=189.64 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=171.3
Q ss_pred CcCcceecccccccccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCC-cceEEEEECcCCcEEEEEcc
Q psy16005 2 SYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYIASGDI 78 (248)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~ 78 (248)
+.+..+++..+......+|.+++|+|||+.|++++ ++.+.||++++++..+ +..+. ..+.+++|+|| +++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~ 83 (582)
T 3o4h_A 6 PVEFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDV 83 (582)
T ss_dssp CCCHHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEEC
T ss_pred eccHHHHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEecc
Confidence 34444455555555677899999999999999875 8999999997766555 44454 68999999999 77777765
Q ss_pred ---CCeEEEEECCC--CceeeeeeccCCCCCeeEEEEecCCCE--EEEEeCCcEEEEEccCCC-------CCceeEeCCC
Q psy16005 79 ---SGKVRIWDTVN--KEHILKNEFHPIGGPIKDIAWSPDNQR--MISIVENGAKVSSLPIDY-------EPSSISLDHE 144 (248)
Q Consensus 79 ---dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~~~~i~~~~~~~-------~~~~~~~~~~ 144 (248)
+...++|.+.. ..... .+... ..+...+|+||++. ++++..++..+|++.... ....+.++|+
T Consensus 84 ~~g~~~~~l~~~~~~~~g~~~--~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spD 160 (582)
T 3o4h_A 84 SKGAEQHALFKVNTSRPGEEQ--RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR 160 (582)
T ss_dssp STTSCCEEEEEEETTSTTCCE--ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE
T ss_pred CCCCcceEEEEEeccCCCccc--cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCC
Confidence 45556655433 22111 22222 23446788888864 444556777899876432 2267889999
Q ss_pred CCEEEEEcCC----CeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCC--cEEEEEcCCCCCCCcccccCCc
Q psy16005 145 HGLVAVGGAD----SKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS--KVHIYELNNKSLSPKAELDHLG 216 (248)
Q Consensus 145 ~~~~~~~~~~----~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~ 216 (248)
|+.+++++.+ ..|++|| .++......+...+..++|||||+.|+++..++ .|++||+.+++.. ...+|..
T Consensus 161 G~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~ 238 (582)
T 3o4h_A 161 GDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPSK 238 (582)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCS
T ss_pred CCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCc
Confidence 9999987766 7799999 344433333445578999999999999888888 8999999988775 3335666
Q ss_pred CeEEEE--------EcCCCcEEEEEcCCCeEEEEEC
Q psy16005 217 PVTDCS--------FSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 217 ~v~~~~--------~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.+..++ |+|||..+++++.++.+++|++
T Consensus 239 ~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 239 DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677677 9999988889999999999997
No 141
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.94 E-value=8.2e-25 Score=167.48 Aligned_cols=220 Identities=13% Similarity=0.127 Sum_probs=163.9
Q ss_pred EEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCC-cceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeec
Q psy16005 22 VLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.++++++++++++++ ++.|++||+.+++....+..+. ..+..++|+|+++++ +++..++.|.+||+.+++.......
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 356788888888775 8999999999998887776443 257889999999865 4556789999999998875533332
Q ss_pred cCC----CCCeeEEEEecCCCEEEEEeC-------------CcEEEEEccC------------CCCCceeEeCCCCCEEE
Q psy16005 99 HPI----GGPIKDIAWSPDNQRMISIVE-------------NGAKVSSLPI------------DYEPSSISLDHEHGLVA 149 (248)
Q Consensus 99 ~~~----~~~v~~~~~~~~~~~l~~~~~-------------~~~~i~~~~~------------~~~~~~~~~~~~~~~~~ 149 (248)
... ...+..++|+|||+++++++. +.+.+|++.. ...+.+++++|+++ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence 211 233788999999999998873 5578898753 22356778999999 55
Q ss_pred EEcCCCeEEEEE--CCceeeeecccC------------------------------------------------------
Q psy16005 150 VGGADSKISIVE--NGAKVSSLPIDY------------------------------------------------------ 173 (248)
Q Consensus 150 ~~~~~~~i~~~~--~~~~~~~~~~~~------------------------------------------------------ 173 (248)
+++. .|.+|| .++....++...
T Consensus 163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 5443 399998 444444443221
Q ss_pred ---------------CCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 174 ---------------EPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 174 ---------------~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
.+..++++| ++++++++ ++.|.+||+.+++...... ....+.+++|+|++++|++++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~ 316 (349)
T 1jmx_B 241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFN 316 (349)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESBSS
T ss_pred cCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc--CCCCccceEECCCCCEEEEecCCC
Confidence 234567789 99999888 8899999999887654443 334578999999999998888899
Q ss_pred eEEEEECCCCC
Q psy16005 238 KVVLYRVPDFE 248 (248)
Q Consensus 238 ~i~vw~~~~~~ 248 (248)
.|.+||+++++
T Consensus 317 ~v~v~d~~~~~ 327 (349)
T 1jmx_B 317 DLAVFNPDTLE 327 (349)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEEeccccc
Confidence 99999998764
No 142
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=3.4e-24 Score=173.07 Aligned_cols=238 Identities=13% Similarity=0.097 Sum_probs=179.3
Q ss_pred ecccccccccCCcEEEEeCC----CCCEEEEeC--CcEEEEEecCCCceeeeeec----------CCc-ceEEEEECcCC
Q psy16005 8 IFATLPRTQRGQPIVLGGDP----KGKNFLYTN--GNSVIIRNIENPAISDIYTE----------HSC-AVNVAKYSPSG 70 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~----------~~~-~v~~~~~s~~~ 70 (248)
++..++ +...+..++|+| ||+++++++ ++.|.+||..+++++..+.. |.. .+.++.++|++
T Consensus 214 ~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~ 291 (543)
T 1nir_A 214 KVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 291 (543)
T ss_dssp EEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred EEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC
Confidence 344454 234578999999 999999886 89999999999998887754 223 68999999966
Q ss_pred c-EEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEccCCCC---------C--
Q psy16005 71 F-YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV--ENGAKVSSLPIDYE---------P-- 136 (248)
Q Consensus 71 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~---------~-- 136 (248)
. ++++...++.|.+||+.+.+.+....+ .+...+..++|+|+|+++++++ ++.+.+|+...... +
T Consensus 292 ~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~ 370 (543)
T 1nir_A 292 PEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 370 (543)
T ss_dssp SEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred CEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence 4 566778899999999988765432233 3456788999999999888775 45678898753211 1
Q ss_pred -ceeE-eCCC-CCEEEEEc-CCCeEEEEE--C-------Cceeeeeccc-CCCceEEEcCCCCEEEEEc-------CCCc
Q psy16005 137 -SSIS-LDHE-HGLVAVGG-ADSKISIVE--N-------GAKVSSLPID-YEPSSISLDHEHGLVAVGG-------ADSK 195 (248)
Q Consensus 137 -~~~~-~~~~-~~~~~~~~-~~~~i~~~~--~-------~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~-------~d~~ 195 (248)
.... ++|+ +.+++++. .+++|.+|| . .+.++.++.+ ..+..++++|++++|++++ .+++
T Consensus 371 g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 371 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 1223 3566 56667765 689999999 3 5667777754 4568899999999999987 2679
Q ss_pred EEEEEcCCCCCCCccc--------ccCCcCeEEEEEcCCCcEEEEE-----cCCCeEEEEECCCCC
Q psy16005 196 VHIYELNNKSLSPKAE--------LDHLGPVTDCSFSPSNEYLVAS-----DAHRKVVLYRVPDFE 248 (248)
Q Consensus 196 v~i~d~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~-----~~d~~i~vw~~~~~~ 248 (248)
|.+||+.+++...... ..+...+..+.|+|+|+.++++ +.++.|.|||.+|+|
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 9999999988763321 2456789999999999998866 247999999999875
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=3.4e-24 Score=163.23 Aligned_cols=213 Identities=12% Similarity=0.111 Sum_probs=159.4
Q ss_pred CEEEEeC-CcEEEEEecCCCceeeeeecCCc--ceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccC---CC
Q psy16005 30 KNFLYTN-GNSVIIRNIENPAISDIYTEHSC--AVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHP---IG 102 (248)
Q Consensus 30 ~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~ 102 (248)
+++++++ ++.|.+||+.+++....+..... .+.+++|+|+++.+ ++++.++.|.+||+.+++.+....... +.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 3566654 99999999999988877753321 47889999999765 556678999999999887654333322 12
Q ss_pred CCeeEEEEecCCCEEEEEe-------------CCcEEEEEccC---------CCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 103 GPIKDIAWSPDNQRMISIV-------------ENGAKVSSLPI---------DYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~-------------~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
..+..++|+|+|++++++. ++.+.+|++.. ...+..+.++|+++.++++ ++.+.+|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 2677899999999998885 35568888642 3456788999999988877 6789999
Q ss_pred E--CCceeeeeccc------------------------------------------------------------------
Q psy16005 161 E--NGAKVSSLPID------------------------------------------------------------------ 172 (248)
Q Consensus 161 ~--~~~~~~~~~~~------------------------------------------------------------------ 172 (248)
| .++....+...
T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 239 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence 8 33333222211
Q ss_pred -CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 173 -YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 173 -~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..+..++|+|++++++++ ++.|++||+.+++...... ....+.+++|+|+|++|++++.++.|.+||+.+++
T Consensus 240 ~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 112358999999999888 7899999999887654443 33467899999999999999899999999998874
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1.1e-24 Score=182.66 Aligned_cols=220 Identities=11% Similarity=0.109 Sum_probs=162.1
Q ss_pred cEEEEeCCCCCEEEEeCCcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 20 PIVLGGDPKGKNFLYTNGNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
+.+++|||||++|++++++.|++||+.++. ....+..|...+.+++|||||++|++++ ++.|++||+.+++.. ..
T Consensus 111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~--~~ 187 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM--QL 187 (741)
T ss_dssp SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE--EC
T ss_pred cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE--Ee
Confidence 788999999999999988999999998873 3445667888899999999999999887 469999999887643 22
Q ss_pred ccCCCCC----------------eeEEEEecCCCEEEEEeCC----------------------------------cEEE
Q psy16005 98 FHPIGGP----------------IKDIAWSPDNQRMISIVEN----------------------------------GAKV 127 (248)
Q Consensus 98 ~~~~~~~----------------v~~~~~~~~~~~l~~~~~~----------------------------------~~~i 127 (248)
...+... +..++|+|||++|++++.+ .+.+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 2222221 4789999999999988643 2355
Q ss_pred EEccC-C------------CCCceeEeCCCCCEEEEEcC-----CCeEEEEE--CCceeeeecccC-----CCceEEEcC
Q psy16005 128 SSLPI-D------------YEPSSISLDHEHGLVAVGGA-----DSKISIVE--NGAKVSSLPIDY-----EPSSISLDH 182 (248)
Q Consensus 128 ~~~~~-~------------~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~--~~~~~~~~~~~~-----~~~~~~~s~ 182 (248)
|++.. . ..+..++| |+++.++++.. +..|++|| .++....+.... .+..++|+|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 66544 2 12357789 99998887653 56789999 444444443322 346899999
Q ss_pred CCCEEEEEcCCCcEEEEEcCC-CCCCCcccccCCcCeEEE-EEcCCCcEEEEE-cCCC--eEEEEECC
Q psy16005 183 EHGLVAVGGADSKVHIYELNN-KSLSPKAELDHLGPVTDC-SFSPSNEYLVAS-DAHR--KVVLYRVP 245 (248)
Q Consensus 183 ~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~-~~d~--~i~vw~~~ 245 (248)
||+++++++.+|.++||.+.. ++ . .....|...+..+ .|+|+++.|+.. +.++ .++||+++
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~-~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-A-AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-E-EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-e-eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 999999999999888887752 33 3 2333567778887 599999977654 4454 89999875
No 145
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.94 E-value=4.7e-23 Score=158.81 Aligned_cols=228 Identities=11% Similarity=0.157 Sum_probs=156.0
Q ss_pred ccCCcEEEEeCCCCCEEEEeCC-----cEEEEEecCC--Ccee--eeeecCCcceEEEEECcCCcEEEEEc-cCCeEEEE
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNG-----NSVIIRNIEN--PAIS--DIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIW 85 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~-----~~v~v~~~~~--~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw 85 (248)
+...+..++|+|||++|++++. +.+.+|+++. ++.. .....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 4566778999999999888763 6999998865 4432 233334556777877 777777665 67899999
Q ss_pred ECCCCceeeee----eccC--------CCCCeeEEEEecCCCEEEEEe--CCcEEEEEccCCC-----------------
Q psy16005 86 DTVNKEHILKN----EFHP--------IGGPIKDIAWSPDNQRMISIV--ENGAKVSSLPIDY----------------- 134 (248)
Q Consensus 86 d~~~~~~~~~~----~~~~--------~~~~v~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~----------------- 134 (248)
++.....+... ...+ +...+.+++|+|+|++++++. .+.+.+|++....
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754322111 1111 123457899999999887776 3456888765322
Q ss_pred ------CCceeEeCCCCCEEEEEc-CCCeEEEEE--CCce--eeeecc----cCCCceEEEcCCCCEEEEEcCC--CcEE
Q psy16005 135 ------EPSSISLDHEHGLVAVGG-ADSKISIVE--NGAK--VSSLPI----DYEPSSISLDHEHGLVAVGGAD--SKVH 197 (248)
Q Consensus 135 ------~~~~~~~~~~~~~~~~~~-~~~~i~~~~--~~~~--~~~~~~----~~~~~~~~~s~~~~~l~~~~~d--~~v~ 197 (248)
.+..++|+|+++++++++ .++.|.+|+ .++. +..+.. ...+..++|+|||++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 245789999999777666 689999999 3332 222211 1235689999999988776654 8899
Q ss_pred EEEcC--CCCCCCcccccCCcCeEEEEEcCCCcEEEEEc-CCCeEEEEECC
Q psy16005 198 IYELN--NKSLSPKAELDHLGPVTDCSFSPSNEYLVASD-AHRKVVLYRVP 245 (248)
Q Consensus 198 i~d~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~ 245 (248)
+|++. +++............+..++|+|||++|++++ .++.|.+|+++
T Consensus 286 v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 99996 34422111112245688999999999888886 67899996553
No 146
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=186.37 Aligned_cols=223 Identities=16% Similarity=0.148 Sum_probs=163.1
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCc---ceEEEEECcCCcEEEEEcc---------CCeEEEEECCC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC---AVNVAKYSPSGFYIASGDI---------SGKVRIWDTVN 89 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~ 89 (248)
+++|+|||++++.+.++.|++||+.+++....+..+.. .+.+++|||||++|++++. ++.|++||+.+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 78999999877777799999999999988776655543 3899999999999998876 78999999998
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC----------------------------CCceeEe
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY----------------------------EPSSISL 141 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~----------------------------~~~~~~~ 141 (248)
++.+....+ ...+..++|+|||+.|+++.++.+.+|++.... ....+.|
T Consensus 100 g~~~~~~~l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 100 GEFVRGNEL---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TEECCSSCC---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred Cccccceec---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 875211222 256889999999999999998888999875321 1147999
Q ss_pred CCCCCEEEEEcCCC----------------------------------eEEEEECC-cee---eee-------cccCCCc
Q psy16005 142 DHEHGLVAVGGADS----------------------------------KISIVENG-AKV---SSL-------PIDYEPS 176 (248)
Q Consensus 142 ~~~~~~~~~~~~~~----------------------------------~i~~~~~~-~~~---~~~-------~~~~~~~ 176 (248)
+|||+.|++++.|. .|++||.. ... ..+ .+...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99999999877542 67888832 221 111 1233467
Q ss_pred eEEEcCCCCEEEEEcCC----CcEEEEE----cCCCCCCCccc---ccCCcCeE-----EEEEcCCCcEEEE--EcCCC-
Q psy16005 177 SISLDHEHGLVAVGGAD----SKVHIYE----LNNKSLSPKAE---LDHLGPVT-----DCSFSPSNEYLVA--SDAHR- 237 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d----~~v~i~d----~~~~~~~~~~~---~~~~~~v~-----~~~~s~~~~~l~~--~~~d~- 237 (248)
.++|+||++++++.... ..|.+|| +.+++...... ..|...+. .+.|+|||+.|+. ...+|
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~ 336 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY 336 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence 89999998877764432 3488999 77776654442 35666666 8899999996654 44454
Q ss_pred -eEEEEECCCC
Q psy16005 238 -KVVLYRVPDF 247 (248)
Q Consensus 238 -~i~vw~~~~~ 247 (248)
.|.+|++.++
T Consensus 337 ~~l~~~~~~~~ 347 (719)
T 1z68_A 337 KHIHYIKDTVE 347 (719)
T ss_dssp EEEEEESSCST
T ss_pred eEEEEEECCCC
Confidence 5677776654
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=9.1e-24 Score=176.16 Aligned_cols=224 Identities=12% Similarity=0.061 Sum_probs=163.5
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC-----Cce
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-----KEH 92 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-----~~~ 92 (248)
..+.+++|||| +.++++.++.+++||+.+++... +..+...+.+++|||||+.|+++ .++.|++||+.+ ++.
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 56999999999 77777778999999998886654 44567778899999999999985 689999999988 664
Q ss_pred eeeeeccCCCCC--------------eeEEEEecCCCEEEEEeC----------------------------------Cc
Q psy16005 93 ILKNEFHPIGGP--------------IKDIAWSPDNQRMISIVE----------------------------------NG 124 (248)
Q Consensus 93 ~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~~----------------------------------~~ 124 (248)
.. ....+... +.+++|+|||++|++++. ..
T Consensus 159 ~~--~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 159 IA--VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp EE--SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred EE--eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 32 12222222 588999999999998861 22
Q ss_pred EEEEEccCC------------CCCceeEeCCCCCEEEEEcCCC-----eEEEEE--CCceeeeec---ccC---CCceEE
Q psy16005 125 AKVSSLPID------------YEPSSISLDHEHGLVAVGGADS-----KISIVE--NGAKVSSLP---IDY---EPSSIS 179 (248)
Q Consensus 125 ~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~--~~~~~~~~~---~~~---~~~~~~ 179 (248)
+.+|++... ..+..++|+|+++.+++++.++ .|++|| .++....+. ... .+..++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 577776432 2245789999999999877665 899999 342333322 111 236789
Q ss_pred EcC--CCCEEEEEcCCCcEEEEEcC-CCCCCCcccccCCcCeEE-EEEcCCCcEEEEEcC-CC----eEEEEECCCC
Q psy16005 180 LDH--EHGLVAVGGADSKVHIYELN-NKSLSPKAELDHLGPVTD-CSFSPSNEYLVASDA-HR----KVVLYRVPDF 247 (248)
Q Consensus 180 ~s~--~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~-d~----~i~vw~~~~~ 247 (248)
|+| ||+++++++.++.++||++. +++....+. .+...+.. ++|+|+++.|+.++. ++ .|..||+.++
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 999 99999999999999999886 444333333 56667776 799999998866544 44 6777777665
No 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=8.6e-23 Score=155.82 Aligned_cols=214 Identities=14% Similarity=0.160 Sum_probs=152.2
Q ss_pred CEEEEe-C-CcEEEEEecC-CCc--eeeeeecCCcceEEEEECcCCcEEEEEccC-CeEEEEECC--CCceeeeeeccCC
Q psy16005 30 KNFLYT-N-GNSVIIRNIE-NPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDIS-GKVRIWDTV--NKEHILKNEFHPI 101 (248)
Q Consensus 30 ~~l~~~-~-~~~v~v~~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~~~~~ 101 (248)
++++++ . ++.|++|+++ +++ .... ..+...+.+++|+|++++|++++.+ +.|.+|++. +++......+..+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 344444 4 8999999985 332 2333 3567788999999999988888776 999999997 5553333334333
Q ss_pred CCCeeEEEEecCCCEEEEEeC-Cc-EEEEEc---c---------CCCCCceeEeCCCCCEEEEEc-CCCeEEEEEC---C
Q psy16005 102 GGPIKDIAWSPDNQRMISIVE-NG-AKVSSL---P---------IDYEPSSISLDHEHGLVAVGG-ADSKISIVEN---G 163 (248)
Q Consensus 102 ~~~v~~~~~~~~~~~l~~~~~-~~-~~i~~~---~---------~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~---~ 163 (248)
..+..++|+|+++++++++. ++ +.+|++ . ....+..++|+|+++.+++++ .++.|.+|+. +
T Consensus 84 -~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 84 -GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp -SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred -CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 37899999999998887764 44 788988 2 223467889999999887776 8899999992 3
Q ss_pred ceee----ee--cccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCC--CCCCC--cc---ccc--CCcCeEEEEEcCCC
Q psy16005 164 AKVS----SL--PIDYEPSSISLDHEHGLVAVG-GADSKVHIYELNN--KSLSP--KA---ELD--HLGPVTDCSFSPSN 227 (248)
Q Consensus 164 ~~~~----~~--~~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~--~~~~~--~~---~~~--~~~~v~~~~~s~~~ 227 (248)
+... .. .....+..++|+|++++++++ ..++.|.+|++.. ++... .. ..+ ....+..++|+|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 3221 11 233467889999999977655 4789999999964 33211 11 101 13356789999999
Q ss_pred cEEEE-EcCCCeEEEEECC
Q psy16005 228 EYLVA-SDAHRKVVLYRVP 245 (248)
Q Consensus 228 ~~l~~-~~~d~~i~vw~~~ 245 (248)
++|++ ...++.|.+|++.
T Consensus 243 ~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVS 261 (343)
T ss_dssp SEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEecCCCEEEEEEEc
Confidence 98874 4578999999997
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=8.6e-24 Score=176.70 Aligned_cols=223 Identities=12% Similarity=0.065 Sum_probs=154.6
Q ss_pred CcEEEEeCCCCCEEEEeCC----------cEEEEEecCCCceeeeee---cCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTNG----------NSVIIRNIENPAISDIYT---EHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~----------~~v~v~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.+.+++|||||++|+++.+ +.+++||+.+++. ..+. .|...+..++|||||+.|++++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 4889999999999998752 7899999998876 2232 34445889999999999999876 799999
Q ss_pred ECCCCceeeeeeccCCCC------------------CeeEEEEecCCCEEEEEeCC------------------------
Q psy16005 86 DTVNKEHILKNEFHPIGG------------------PIKDIAWSPDNQRMISIVEN------------------------ 123 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~~------------------------ 123 (248)
|+.+++... ....+.. .+.+++|+|||+.|++++.+
T Consensus 140 ~~~~g~~~~--~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (723)
T 1xfd_A 140 AHVGKQAIR--VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (723)
T ss_dssp SSSSSCCEE--EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred ECCCCceEE--EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceecc
Confidence 999877532 2222222 23789999999999988743
Q ss_pred -----------cEEEEEccCCC----------------CCceeEeCCCCCEEEEEcC----CCeEEEEE--CCceeeeec
Q psy16005 124 -----------GAKVSSLPIDY----------------EPSSISLDHEHGLVAVGGA----DSKISIVE--NGAKVSSLP 170 (248)
Q Consensus 124 -----------~~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~~----~~~i~~~~--~~~~~~~~~ 170 (248)
.+.+|++.... .+..++|+|+++++++... +..|++|| .++....+.
T Consensus 218 ~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 297 (723)
T 1xfd_A 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (723)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE
Confidence 35677765432 2345889999998876543 35788999 444443332
Q ss_pred c--cCCC----ceEEEcCCCCEEEE--EcCCC------cEEEEE-cCCCCC--CCcccccCCcCeEE-EEEcCCCcEEEE
Q psy16005 171 I--DYEP----SSISLDHEHGLVAV--GGADS------KVHIYE-LNNKSL--SPKAELDHLGPVTD-CSFSPSNEYLVA 232 (248)
Q Consensus 171 ~--~~~~----~~~~~s~~~~~l~~--~~~d~------~v~i~d-~~~~~~--~~~~~~~~~~~v~~-~~~s~~~~~l~~ 232 (248)
. ...+ ..++|+|||+.|+. +..++ .|++|| ..+++. ...+. .+...+.. ++|+|||+.|+.
T Consensus 298 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 298 DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYF 376 (723)
T ss_dssp EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEE
T ss_pred eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-cCCeEEEeeeEEcCCCCEEEE
Confidence 2 2222 37899999997665 44566 567777 344431 33333 23334554 699999999976
Q ss_pred EcCC---CeEEEEECCC
Q psy16005 233 SDAH---RKVVLYRVPD 246 (248)
Q Consensus 233 ~~~d---~~i~vw~~~~ 246 (248)
.+.+ +.+++|+++.
T Consensus 377 ~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EESSSCTTCCEEEEECS
T ss_pred EEcCCCCcceEEEEEeC
Confidence 6554 7899998753
No 150
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.92 E-value=1.2e-23 Score=176.32 Aligned_cols=228 Identities=15% Similarity=0.124 Sum_probs=165.0
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcc-----eEEEEECcCCcEEEEEccC---------Ce
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA-----VNVAKYSPSGFYIASGDIS---------GK 81 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~d---------g~ 81 (248)
......+++|+|||++++++ ++.|++||+.+++....+..|... ...+.|||||++|+.++.+ +.
T Consensus 15 ~~~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 15 YRLKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp SCCCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 34456789999999999887 999999999999887777766532 2347899999999998876 56
Q ss_pred EEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCC--------------------------
Q psy16005 82 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYE-------------------------- 135 (248)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-------------------------- 135 (248)
+.+||+.+++.. .+..+...+...+|||||+.|+.+.++.+.+|++.....
T Consensus 94 ~~~~d~~~~~~~---~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 94 YDIYDLNKRQLI---TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEETTTTEEC---CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEECCCCcEE---EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 779999998743 455667889999999999999999988888888743211
Q ss_pred --CceeEeCCCCCEEEEEcCCC------------------------------------eEEEEEC-----Cc--eeeeec
Q psy16005 136 --PSSISLDHEHGLVAVGGADS------------------------------------KISIVEN-----GA--KVSSLP 170 (248)
Q Consensus 136 --~~~~~~~~~~~~~~~~~~~~------------------------------------~i~~~~~-----~~--~~~~~~ 170 (248)
...+.|+|||+.|+....|. .|++||. ++ ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 12478999999998764221 4677882 31 233332
Q ss_pred -------ccCCCceEEEcCCCCEEEEEcC----CCcEEEEEcCCCC----CCCcc---cccCCcCeE-----EEEEcCCC
Q psy16005 171 -------IDYEPSSISLDHEHGLVAVGGA----DSKVHIYELNNKS----LSPKA---ELDHLGPVT-----DCSFSPSN 227 (248)
Q Consensus 171 -------~~~~~~~~~~s~~~~~l~~~~~----d~~v~i~d~~~~~----~~~~~---~~~~~~~v~-----~~~~s~~~ 227 (248)
....+..++|+|||+.++.... +..|++||+.+++ +.... ...|...|. .+.|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 2334678899999996665532 3479999999987 22111 123554444 78999999
Q ss_pred cEEE-EEcC-C--CeEEEEECCCC
Q psy16005 228 EYLV-ASDA-H--RKVVLYRVPDF 247 (248)
Q Consensus 228 ~~l~-~~~~-d--~~i~vw~~~~~ 247 (248)
+.|+ ..+. + ..|++|++.++
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCS
T ss_pred CEEEEEEEcCCCceEEEEEECCCC
Confidence 9877 5543 3 46888887654
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=1.3e-22 Score=155.58 Aligned_cols=214 Identities=10% Similarity=0.068 Sum_probs=161.8
Q ss_pred CCcEEEEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeeecCCc---------ceEEEEECcCCcEEEEEc--cCCeEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYTEHSC---------AVNVAKYSPSGFYIASGD--ISGKVRI 84 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~--~dg~i~i 84 (248)
..+..++|+|+|++++++ . ++.|.+||..+++....+..+.. .+.+++|+|+++++++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 346789999999976665 3 78999999999988877765432 278899999999887765 4789999
Q ss_pred EECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC--------------CCCceeEeCCCCCEEE
Q psy16005 85 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID--------------YEPSSISLDHEHGLVA 149 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~--------------~~~~~~~~~~~~~~~~ 149 (248)
||..+++.. ..+..+...+.+++|+|++++++++..++ +.+|++... ..+..++++|+++.++
T Consensus 169 ~d~~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 169 VDGGNIKLK--TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp EETTTTEEE--EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred EcCCCCceE--EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 999988754 33443455688999999999998887655 577776421 1234589999999766
Q ss_pred EEc-CCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 150 VGG-ADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 150 ~~~-~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
++. .++.|.+|| .++.+..+.... ...++|+|+++++++++ .++.|.+||..+++...... ....+.+++|+|
T Consensus 247 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~ 323 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD--TPTHPNSLALSA 323 (353)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE--CCSEEEEEEECT
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe--cCCCCCeEEEcC
Confidence 655 459999999 556666666544 46799999999666555 68999999999888755443 344689999999
Q ss_pred CCcEEEEEcCC
Q psy16005 226 SNEYLVASDAH 236 (248)
Q Consensus 226 ~~~~l~~~~~d 236 (248)
||++|+.+..+
T Consensus 324 dg~~l~v~~~~ 334 (353)
T 3vgz_A 324 DGKTLYVSVKQ 334 (353)
T ss_dssp TSCEEEEEEEC
T ss_pred CCCEEEEEEcc
Confidence 99977766543
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=7.5e-24 Score=183.43 Aligned_cols=226 Identities=10% Similarity=0.016 Sum_probs=171.5
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC-CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN-PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
..|.+.+.++.|+++ .++++++ ++.+.+|.+.. +.....+..|. .+...+|+|||+.|+++ .++.|.+||+....
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK 276 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE
Confidence 457888999999998 5555555 77788887653 33444555554 45677999999999887 58999999995433
Q ss_pred eeeeeeccC-----------CCCCeeEEEEe-cCCCEEEEEeCCcEEEEEccCC---------C-CCceeEeCCCCCEEE
Q psy16005 92 HILKNEFHP-----------IGGPIKDIAWS-PDNQRMISIVENGAKVSSLPID---------Y-EPSSISLDHEHGLVA 149 (248)
Q Consensus 92 ~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~~~~~i~~~~~~---------~-~~~~~~~~~~~~~~~ 149 (248)
+. .+.. |...+..++|+ |||+.+++++.+.+.+|++... . .+..+.|+ +++.++
T Consensus 277 -l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~ 352 (1045)
T 1k32_A 277 -IE--KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFI 352 (1045)
T ss_dssp -EE--ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEE
T ss_pred -ee--eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEE
Confidence 21 3332 33468999999 9999999999777788876432 2 45677889 999999
Q ss_pred EEcCCCeEE-EEE-CCceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC
Q psy16005 150 VGGADSKIS-IVE-NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 150 ~~~~~~~i~-~~~-~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
.++.+..+. +|+ .+.....+ .+...+..++|+|||++|++++.++.|++||+.+++..... .+|...+.+++||||
T Consensus 353 ~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~-~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 353 HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-RSREAMITDFTISDN 431 (1045)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCCEEECTT
T ss_pred EEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-cCCCCCccceEECCC
Confidence 888888888 888 23333333 33456789999999999999999999999999988765433 268888999999999
Q ss_pred CcEEEEEcCC----------CeEEEEECCCC
Q psy16005 227 NEYLVASDAH----------RKVVLYRVPDF 247 (248)
Q Consensus 227 ~~~l~~~~~d----------~~i~vw~~~~~ 247 (248)
|++|++++.+ +.|++||+.++
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 9999888664 49999999875
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=5.5e-24 Score=167.59 Aligned_cols=199 Identities=18% Similarity=0.205 Sum_probs=140.3
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc----------eee-----eeecCCcceEEEEECcCCcEEE----EEc
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA----------ISD-----IYTEHSCAVNVAKYSPSGFYIA----SGD 77 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~----------~~~-----~~~~~~~~v~~~~~s~~~~~l~----~~~ 77 (248)
...+..+++++++.++++++...+++|+..... ... ....+...|.+++|+|++++|+ +++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 346889999999999999874448888753210 000 1113566799999999999999 789
Q ss_pred cCCeEEEEECCCC--------cee-eeeeccCCCCCeeEEEEecC-CCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCE
Q psy16005 78 ISGKVRIWDTVNK--------EHI-LKNEFHPIGGPIKDIAWSPD-NQRMISIVENGAKVSSLPIDYEPSSISLDHEHGL 147 (248)
Q Consensus 78 ~dg~i~iwd~~~~--------~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 147 (248)
.|+.|++||+.++ +.+ ....+.+|...|.+++|+|+ +++
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~------------------------------- 164 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM------------------------------- 164 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE-------------------------------
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE-------------------------------
Confidence 9999999998754 111 12345567888999999886 444
Q ss_pred EEEEcCCCeEEEEECC--cee-eeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc------ccCCcCe
Q psy16005 148 VAVGGADSKISIVENG--AKV-SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE------LDHLGPV 218 (248)
Q Consensus 148 ~~~~~~~~~i~~~~~~--~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~------~~~~~~v 218 (248)
+++++.|+.|++||.. ... ....+...+.+++|+|+|++|++|+.||.|++||++ ++...... ..|...|
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v 243 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRV 243 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEE
T ss_pred EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeE
Confidence 4456666777777732 222 223356678999999999999999999999999998 33222111 1234589
Q ss_pred EEEEEcCCCcEEEEE-cCCC------eEEEEECCCC
Q psy16005 219 TDCSFSPSNEYLVAS-DAHR------KVVLYRVPDF 247 (248)
Q Consensus 219 ~~~~~s~~~~~l~~~-~~d~------~i~vw~~~~~ 247 (248)
.+++|++++.++++. +.+| .+++|++...
T Consensus 244 ~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999999999887654 3343 3899998753
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=3.8e-23 Score=179.08 Aligned_cols=219 Identities=13% Similarity=0.074 Sum_probs=171.6
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeec-----------CCcceEEEEEC-cCCcEEEEEccCCeEEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-----------HSCAVNVAKYS-PSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~-----------~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd 86 (248)
.+...+|+|||+.++++.++.|++|++...+.. .+.. |...+.+++|+ |||+.|++++ ++.+.+|+
T Consensus 246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~ 323 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQD 323 (1045)
T ss_dssp SSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEEC
T ss_pred CcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEc
Confidence 356789999999999999999999998544333 4433 34468999999 9999999887 78999999
Q ss_pred CCCCceeeeeeccCCCC-CeeEEEEecCCCEEEEEeCCc-EE-EEEccC---------CCCCceeEeCCCCCEEEEEcCC
Q psy16005 87 TVNKEHILKNEFHPIGG-PIKDIAWSPDNQRMISIVENG-AK-VSSLPI---------DYEPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~-~~-i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 154 (248)
+.+++.. .+..|.. .+..++|+ ||+.+++++++. +. +|++.. ...+..++|+|+++.+++++.+
T Consensus 324 ~~~~~~~---~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 324 VSGTYVL---KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp TTSSBEE---ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred CCCCceE---EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCC
Confidence 9877632 3455666 89999999 999999988743 23 455432 2345688999999999999999
Q ss_pred CeEEEEE--CCceeeee-cccCCCceEEEcCCCCEEEEEcCCC----------cEEEEEcCCCCCCCcccccCCcCeEEE
Q psy16005 155 SKISIVE--NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADS----------KVHIYELNNKSLSPKAELDHLGPVTDC 221 (248)
Q Consensus 155 ~~i~~~~--~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~----------~v~i~d~~~~~~~~~~~~~~~~~v~~~ 221 (248)
+.+++|| .++..... .+...+..++|+|||++|++++.++ .|++||+.+++. . ....|...+..+
T Consensus 400 ~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-~-~l~~~~~~~~~~ 477 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-F-AATTENSHDYAP 477 (1045)
T ss_dssp SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-E-ECSCSSSBEEEE
T ss_pred CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-E-EeeCCCcccCCc
Confidence 9999999 44554444 4556678999999999998887643 899999998763 2 233577788999
Q ss_pred EEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 222 SFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 222 ~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+|+|||++|++++.++...+|+..
T Consensus 478 ~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 478 AFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EECTTSCEEEEEESCCCCCEECSS
T ss_pred eEcCCCCEEEEEecccCCcCcchh
Confidence 999999999999888877777653
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.92 E-value=7.6e-23 Score=157.90 Aligned_cols=229 Identities=11% Similarity=0.052 Sum_probs=158.9
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecC-CCceeeeeecC-CcceEEEEECcCCcE--EEEEc-------------cCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIE-NPAISDIYTEH-SCAVNVAKYSPSGFY--IASGD-------------ISG 80 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~--l~~~~-------------~dg 80 (248)
..+..++|+|||++|++++.+.|.+|++. +++........ .+.+.+++|+|+|++ +++++ .+|
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 46778999999999888874499999997 77665433211 123556899999994 55654 689
Q ss_pred eEEEEECCC-Cceeeeeecc--CCCCCeeEEEEecCCCEEEEEeC--CcEEEEEcc-C--------------CCCCceeE
Q psy16005 81 KVRIWDTVN-KEHILKNEFH--PIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLP-I--------------DYEPSSIS 140 (248)
Q Consensus 81 ~i~iwd~~~-~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~-~--------------~~~~~~~~ 140 (248)
.+.+|++.. ++........ .+...+.+++|+|||++++++.. +.+.+|++. . ...+..++
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence 999999974 5432211111 24567899999999999887753 457888875 1 22356789
Q ss_pred eCCCCCEEEEEcC-CCeEEEEE----CCcee---eee---ccc----C-------CCceEE-EcCCCCEEEEEcCC-C--
Q psy16005 141 LDHEHGLVAVGGA-DSKISIVE----NGAKV---SSL---PID----Y-------EPSSIS-LDHEHGLVAVGGAD-S-- 194 (248)
Q Consensus 141 ~~~~~~~~~~~~~-~~~i~~~~----~~~~~---~~~---~~~----~-------~~~~~~-~s~~~~~l~~~~~d-~-- 194 (248)
|+|+++++++++. ++.+.+|+ .++.. ..+ +.. . .+..++ |+|||++|++++.+ +
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~ 279 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE 279 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCC
Confidence 9999998877664 78999986 23332 112 111 1 367899 99999988877643 2
Q ss_pred ---cEEEEEcC-CCCCCCc--ccccCCcCeEEEEEcC---CCcEEEEEcCC-CeEEEEECCC
Q psy16005 195 ---KVHIYELN-NKSLSPK--AELDHLGPVTDCSFSP---SNEYLVASDAH-RKVVLYRVPD 246 (248)
Q Consensus 195 ---~v~i~d~~-~~~~~~~--~~~~~~~~v~~~~~s~---~~~~l~~~~~d-~~i~vw~~~~ 246 (248)
.|.+|++. +++.... ....+...+..++|+| ||++|++++.+ +.|.+|+++.
T Consensus 280 ~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 89999996 4543221 1112444567889999 89999998764 8999998754
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=1.6e-20 Score=144.65 Aligned_cols=217 Identities=12% Similarity=0.101 Sum_probs=148.8
Q ss_pred CCCCEEEEeC-----CcEEEEEec--CCCceeeeeecCCcceEEEEECcCCcEEEEEccC----CeEEEEECCC--Ccee
Q psy16005 27 PKGKNFLYTN-----GNSVIIRNI--ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVN--KEHI 93 (248)
Q Consensus 27 ~~~~~l~~~~-----~~~v~v~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~--~~~~ 93 (248)
+...+++.|+ ++.|++|.+ .+++.......+...+..++|+|++++|++++.+ +.|.+|++.. ++..
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3344555552 568888876 4455443322266677889999999999998875 7999998865 4432
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeC--CcEEEEEccCCCC------------------------CceeEeCCCCCE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLPIDYE------------------------PSSISLDHEHGL 147 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~~~~~------------------------~~~~~~~~~~~~ 147 (248)
.......+...+..+++ ++++|++++. +.+.+|++..... +..++++|+++.
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 22333334556777877 8888888763 3468999853221 145899999996
Q ss_pred EEE-EcCCCeEEEEE--CCc-------e-------eeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCc
Q psy16005 148 VAV-GGADSKISIVE--NGA-------K-------VSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPK 209 (248)
Q Consensus 148 ~~~-~~~~~~i~~~~--~~~-------~-------~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~ 209 (248)
+++ ...++.+.+|+ ... . .........+..++|+|||+++++++ .++.|.+|++.+++....
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 655 45588999997 211 1 12233455678999999999887776 589999999987654211
Q ss_pred c----cccCCcCeEEEEEcCCCcEEEEEcC--CCeEEEEECC
Q psy16005 210 A----ELDHLGPVTDCSFSPSNEYLVASDA--HRKVVLYRVP 245 (248)
Q Consensus 210 ~----~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~ 245 (248)
. ...+...+..++|+|||++|+++.. ++.|.+|+++
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 1 1123345789999999999877655 4899999985
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.7e-21 Score=153.49 Aligned_cols=157 Identities=11% Similarity=0.106 Sum_probs=116.3
Q ss_pred ccCCcEEEEeCCCCCEEE----EeC-CcEEEEEecCCC--------ce---eeeeecCCcceEEEEECcC-CcEEEEEcc
Q psy16005 16 QRGQPIVLGGDPKGKNFL----YTN-GNSVIIRNIENP--------AI---SDIYTEHSCAVNVAKYSPS-GFYIASGDI 78 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~----~~~-~~~v~v~~~~~~--------~~---~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 78 (248)
+.+.|.+++|+|+|++|+ +++ |+.|++||+.++ +. ...+.+|...|.+++|+|+ +++|++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 456799999999999999 565 899999998754 11 3455679999999999997 899999999
Q ss_pred CCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 79 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
||+|++||++++... ....+|...+.+++|+|+|++|+++ +.|+.|+
T Consensus 171 Dg~v~iwD~~~~~~~--~~~~~~~~~v~~v~wspdg~~lasg-------------------------------s~dg~v~ 217 (434)
T 2oit_A 171 DGSIAVLQVTETVKV--CATLPSTVAVTSVCWSPKGKQLAVG-------------------------------KQNGTVV 217 (434)
T ss_dssp TSCEEEEEESSSEEE--EEEECGGGCEEEEEECTTSSCEEEE-------------------------------ETTSCEE
T ss_pred CCeEEEEEcCCCcce--eeccCCCCceeEEEEcCCCCEEEEE-------------------------------cCCCcEE
Confidence 999999999988543 3445577889999999988777665 4455666
Q ss_pred EEECC-ceeeeecc--------cCCCceEEEcCCCCEEEEE-cCCC------cEEEEEcCCCC
Q psy16005 159 IVENG-AKVSSLPI--------DYEPSSISLDHEHGLVAVG-GADS------KVHIYELNNKS 205 (248)
Q Consensus 159 ~~~~~-~~~~~~~~--------~~~~~~~~~s~~~~~l~~~-~~d~------~v~i~d~~~~~ 205 (248)
+||.. +....+.. ...+.+++|++++.++++. +.+| .+++|++++.+
T Consensus 218 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 218 QYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred EEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 66633 22222221 1256789999988777543 3343 38999998653
No 158
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.89 E-value=2e-19 Score=134.12 Aligned_cols=226 Identities=9% Similarity=0.125 Sum_probs=163.4
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee------cCCcceEEEEE-CcCCcEEEEEcc-CCeEEEEE
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT------EHSCAVNVAKY-SPSGFYIASGDI-SGKVRIWD 86 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~------~~~~~v~~~~~-s~~~~~l~~~~~-dg~i~iwd 86 (248)
+...+.+++++|+|+++++.. ++.|.+||.. ++....+. .+...+.++++ .++++++++... ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456789999999999877765 8899999976 55555443 23356889999 577777776643 78999999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEccC-----------CCCCceeEeCCCCCEEEEEcCC
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLPI-----------DYEPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 154 (248)
.+++.+.... ..+...+..++++|+|+.+++... +.+.+|+... ...+..++++++++++++...+
T Consensus 107 -~~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 107 -QYGQFVRKFG-ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp -TTSCEEEEEC-TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred -CCCcEEEEec-CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 4555432221 223457899999999987666544 3456666321 1346789999999988888889
Q ss_pred CeEEEEE-CCceeeeeccc---CCCceEEEcCCCCEEEEEcCCC-cEEEEEcCCCCCCCccccc-CCcCeEEEEEcCCCc
Q psy16005 155 SKISIVE-NGAKVSSLPID---YEPSSISLDHEHGLVAVGGADS-KVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNE 228 (248)
Q Consensus 155 ~~i~~~~-~~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~ 228 (248)
+.|++|+ .++.+..+... ..+..++++|+|+++++...++ .|.+||.. ++.+..+... ....+.+++++|+|+
T Consensus 185 ~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~ 263 (286)
T 1q7f_A 185 HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGS 263 (286)
T ss_dssp TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred CEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCc
Confidence 9999999 55555555443 4578999999999888887776 99999964 4433333221 223478999999998
Q ss_pred EEEEEcCCCeEEEEECCC
Q psy16005 229 YLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 229 ~l~~~~~d~~i~vw~~~~ 246 (248)
++++ +.++.|++|++..
T Consensus 264 l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 264 VVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEE-ETTTEEEEEECSC
T ss_pred EEEE-CCCCeEEEEEccc
Confidence 7776 5799999999865
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=2.6e-21 Score=147.97 Aligned_cols=188 Identities=7% Similarity=0.005 Sum_probs=140.7
Q ss_pred CcEEEEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeeecCC------cceEEEEECcCCcEEEEEccC-----------
Q psy16005 19 QPIVLGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYTEHS------CAVNVAKYSPSGFYIASGDIS----------- 79 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~d----------- 79 (248)
.+..++|+|+|+.++++ . ++.|.+||+.+++....+.... ..+.+++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 57789999999876654 3 7899999999988877665322 237789999999999998865
Q ss_pred -CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC------------------------
Q psy16005 80 -GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY------------------------ 134 (248)
Q Consensus 80 -g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~------------------------ 134 (248)
+.|.+||+.+++.........+...+.+++|+|+|+ +++++. .+.+|+.....
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP-DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 201 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS-SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred CCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC-cEEEEeCCCCceeccccccccCCccccCccceeee
Confidence 899999998855322222222345688999999999 555443 37777653211
Q ss_pred ------------------------------------------------------CCceeEeCC-CCCEEEEEcCCCeEEE
Q psy16005 135 ------------------------------------------------------EPSSISLDH-EHGLVAVGGADSKISI 159 (248)
Q Consensus 135 ------------------------------------------------------~~~~~~~~~-~~~~~~~~~~~~~i~~ 159 (248)
.+..++++| ++++++++ ++.|.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~ 279 (349)
T 1jmx_B 202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAK 279 (349)
T ss_dssp CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence 112345568 99988887 889999
Q ss_pred EE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc
Q psy16005 160 VE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 210 (248)
|| .++.+..+.....+.+++|+|++++|++++.++.|.+||+++++.+..+
T Consensus 280 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 280 YDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence 99 4566666766777899999999998888888999999999988765444
No 160
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=1.9e-20 Score=143.42 Aligned_cols=208 Identities=12% Similarity=0.157 Sum_probs=143.5
Q ss_pred CcEEEEEecC--CCceee-eeecCCcceEEEEECcCCcEEEEEcc---CCeEEEEECCCCceeeeeeccCCCCCeeEEEE
Q psy16005 37 GNSVIIRNIE--NPAISD-IYTEHSCAVNVAKYSPSGFYIASGDI---SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 110 (248)
Q Consensus 37 ~~~v~v~~~~--~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 110 (248)
++.+++|+++ +++... ....+...+..++|+|+|+ |++++. ++.|.+|++.+++......+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 4567776654 455433 2234556678899999999 655544 68999999977664333343445678899999
Q ss_pred ecCCCEEEEEe-CCc-EEEEEccCCC----------------------CCceeEeCCCCCEEEEEcCCCeEEEEECC---
Q psy16005 111 SPDNQRMISIV-ENG-AKVSSLPIDY----------------------EPSSISLDHEHGLVAVGGADSKISIVENG--- 163 (248)
Q Consensus 111 ~~~~~~l~~~~-~~~-~~i~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 163 (248)
+|||++|++++ .++ +.+|++.... .+..++++|+++++++...++.+.+|+..
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 99999998887 434 6899875211 13468999999977777788999999932
Q ss_pred ceee--e--ecccCCCceEEEcCCCCEEEE-EcCCCcEEEEEcCC--CCCCCccc-ccC------CcCeEEEEEcCCCcE
Q psy16005 164 AKVS--S--LPIDYEPSSISLDHEHGLVAV-GGADSKVHIYELNN--KSLSPKAE-LDH------LGPVTDCSFSPSNEY 229 (248)
Q Consensus 164 ~~~~--~--~~~~~~~~~~~~s~~~~~l~~-~~~d~~v~i~d~~~--~~~~~~~~-~~~------~~~v~~~~~s~~~~~ 229 (248)
+... . ......+..++|+|||+++++ ...++.|.+|++.. ++...... ... ...+..++|+|||++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 2221 1 122335678999999996666 56688999999875 33211110 011 145889999999998
Q ss_pred EEE-EcCCCeEEEEECC
Q psy16005 230 LVA-SDAHRKVVLYRVP 245 (248)
Q Consensus 230 l~~-~~~d~~i~vw~~~ 245 (248)
|++ ...++.|.+|++.
T Consensus 254 l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEEEETTTEEEEEEEC
T ss_pred EEEEeCCCCEEEEEEEC
Confidence 854 5568999999986
No 161
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.88 E-value=1.5e-19 Score=137.62 Aligned_cols=230 Identities=13% Similarity=0.059 Sum_probs=169.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-C------------------------cEEEEEecCCCceeeeee-cCCcceEEEEECcC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-G------------------------NSVIIRNIENPAISDIYT-EHSCAVNVAKYSPS 69 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~------------------------~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~ 69 (248)
..+.+.+++++|+|+++++.. + +.|.+||..+++....+. .+-.....++++|+
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 457899999999999988876 4 379999998888776554 33457889999999
Q ss_pred CcEEEEEccCCeEEEEECCCCc-eeeeeec-------cCCCCCeeEEEEec-CCCEEEEEe--CCcEEEEEccCC-----
Q psy16005 70 GFYIASGDISGKVRIWDTVNKE-HILKNEF-------HPIGGPIKDIAWSP-DNQRMISIV--ENGAKVSSLPID----- 133 (248)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~-------~~~~~~v~~~~~~~-~~~~l~~~~--~~~~~i~~~~~~----- 133 (248)
|+++++...++.|++||..... .+..... ..+-..+..++++| +++.+++.+ ...+.+|+....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~ 181 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQW 181 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEe
Confidence 9988888889999999986542 2211110 23344689999999 777777764 344566663210
Q ss_pred --------------CCCceeEeCCC-CCEEEEEcCCCeEEEEE-C-Cceeeeecc---cCCCceEEEcC------CCCEE
Q psy16005 134 --------------YEPSSISLDHE-HGLVAVGGADSKISIVE-N-GAKVSSLPI---DYEPSSISLDH------EHGLV 187 (248)
Q Consensus 134 --------------~~~~~~~~~~~-~~~~~~~~~~~~i~~~~-~-~~~~~~~~~---~~~~~~~~~s~------~~~~l 187 (248)
..+..++++|+ +.++++...++.|++|+ . ++.+..+.. ...+..++++| +|+..
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~ 261 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY 261 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence 12678999998 78888888899999999 3 777776642 34567888888 33322
Q ss_pred EEEcCCCcEEEEEcCCCCCCCccc--ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 188 AVGGADSKVHIYELNNKSLSPKAE--LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 188 ~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
++...+..|++||..+++.+..+. .++...+..++++|+|..+++...++.|++|++.
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 223345589999999988765442 2456678999999999888888889999999975
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=3e-21 Score=149.97 Aligned_cols=223 Identities=5% Similarity=-0.044 Sum_probs=150.2
Q ss_pred EEeCCCCCEEEEeC--Cc--EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 23 LGGDPKGKNFLYTN--GN--SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 23 ~~~s~~~~~l~~~~--~~--~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.+|||||+.|++++ ++ .|++||+.+++.......+...+..+.|+||++.|+.++.++.|++||+.+++......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~- 119 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ- 119 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee-
Confidence 78999999988875 44 59999999988877666666666577899999999999999999999999987543333
Q ss_pred cCCCCCeeEEE--EecCCCEEEEEe-----------------------CCcEEEEEccCC---------CCCceeEeCC-
Q psy16005 99 HPIGGPIKDIA--WSPDNQRMISIV-----------------------ENGAKVSSLPID---------YEPSSISLDH- 143 (248)
Q Consensus 99 ~~~~~~v~~~~--~~~~~~~l~~~~-----------------------~~~~~i~~~~~~---------~~~~~~~~~~- 143 (248)
.+...+.... ++|+++.++... ...+.+|++... ..+..+.|+|
T Consensus 120 -~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~ 198 (388)
T 3pe7_A 120 -VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY 198 (388)
T ss_dssp -CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred -chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCC
Confidence 3334443333 489999887532 122455665422 2356788999
Q ss_pred CCCEEEEEcCC------CeEEEEE-CCceeeeecccC---CCceEEEcCCCCEEEEEcC-CC----cEEEEEcCCCCCCC
Q psy16005 144 EHGLVAVGGAD------SKISIVE-NGAKVSSLPIDY---EPSSISLDHEHGLVAVGGA-DS----KVHIYELNNKSLSP 208 (248)
Q Consensus 144 ~~~~~~~~~~~------~~i~~~~-~~~~~~~~~~~~---~~~~~~~s~~~~~l~~~~~-d~----~v~i~d~~~~~~~~ 208 (248)
+++.++....+ ..|.+++ .+.....+.... .+..++|+|||+.|+..+. ++ .|++||+.+++...
T Consensus 199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (388)
T 3pe7_A 199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ 278 (388)
T ss_dssp EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE
T ss_pred CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE
Confidence 99988876653 3788888 344444443322 3567899999997765443 22 39999999887532
Q ss_pred cccccC-C---cCeEEEEEcCCCcEEEEE---------cCCCeEEEEECCCC
Q psy16005 209 KAELDH-L---GPVTDCSFSPSNEYLVAS---------DAHRKVVLYRVPDF 247 (248)
Q Consensus 209 ~~~~~~-~---~~v~~~~~s~~~~~l~~~---------~~d~~i~vw~~~~~ 247 (248)
...... . .....+.|+|||+.|+.. ..+..|++||+.++
T Consensus 279 l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 279 LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 211111 0 001223799999988754 45678999999875
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=1.4e-20 Score=153.67 Aligned_cols=183 Identities=12% Similarity=0.037 Sum_probs=135.4
Q ss_pred CcceEEEEECcCCcEEEEEcc-CCeEEEEECCCCceeeeeeccCCC-CCeeEEEEecCCCEEEEEeC----CcEEEEEcc
Q psy16005 58 SCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIG-GPIKDIAWSPDNQRMISIVE----NGAKVSSLP 131 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~----~~~~i~~~~ 131 (248)
..+|.+++|+|||+.||+++. ||+++||++.+++. ..+..+. ..+..++|+|| +.++++.. +...+|.++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 567999999999999999877 99999999866653 2344444 68999999999 77776664 334777665
Q ss_pred C--CC---------CCceeEeCCCCCE-EEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCC----
Q psy16005 132 I--DY---------EPSSISLDHEHGL-VAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD---- 193 (248)
Q Consensus 132 ~--~~---------~~~~~~~~~~~~~-~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---- 193 (248)
. .. .....+++|+++. +++...++.+.+|| .++......... .+++|||||++|++++.+
T Consensus 97 ~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 97 TSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred ccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence 4 21 2335577888753 33444445555998 444333333222 889999999999988766
Q ss_pred CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC--eEEEEECCCCC
Q psy16005 194 SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR--KVVLYRVPDFE 248 (248)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~vw~~~~~~ 248 (248)
+.|++||+.+++.. . ...|...+..++|||||++|+++..++ .|++||+++++
T Consensus 175 ~~i~~~d~~~g~~~-~-l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-V-FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp EEEEEEETTTCCCE-E-ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred eEEEEEcCCCCCce-E-eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 78999999988764 2 336788899999999999999888888 89999998764
No 164
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=1.4e-20 Score=143.20 Aligned_cols=185 Identities=11% Similarity=0.121 Sum_probs=141.9
Q ss_pred CcEEEEeCCCCCEEEEe-------------CCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYT-------------NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~-------------~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.+.+++|+|+|++++++ .++.|.+||+.+++....+.. ...+.+++|+|++++|+++ ++.|.+|
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 57789999999998887 368999999998888776654 4567889999999988887 6889999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-------------------------cEEEEEccCC-------
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-------------------------GAKVSSLPID------- 133 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------------------------~~~i~~~~~~------- 133 (248)
|+.+++.........+..+ +.|+|+++.++..+.. .+.+|++...
T Consensus 160 d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp ETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred ECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 9998875533322221122 3789998877655432 2355665432
Q ss_pred ----CCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 134 ----YEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
..+..++++|++++++++ ++.|.+|| .++.+..+.....+.+++|+|+|++|++++.++.|.+||+.+++.+
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 234568999999998888 79999999 4566667777778899999999999999999999999999998765
Q ss_pred Cccc
Q psy16005 208 PKAE 211 (248)
Q Consensus 208 ~~~~ 211 (248)
..+.
T Consensus 315 ~~~~ 318 (337)
T 1pby_B 315 GQVD 318 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=2.2e-20 Score=156.15 Aligned_cols=219 Identities=11% Similarity=0.037 Sum_probs=149.7
Q ss_pred CcEEEEeCCCCCEEEEeC----------CcEEEEEecCCCcee--eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTN----------GNSVIIRNIENPAIS--DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~----------~~~v~v~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
.+.+++|||||++|++++ ++.|++||+.+++.. ..+ ...+.+++|||||+.|+++. ++.|++||
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 378999999999999875 389999999988763 222 25688999999999999885 78999999
Q ss_pred CCCCceeeeeeccCCCCCe-----------------eEEEEecCCCEEEEEeCC--------------------------
Q psy16005 87 TVNKEHILKNEFHPIGGPI-----------------KDIAWSPDNQRMISIVEN-------------------------- 123 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l~~~~~~-------------------------- 123 (248)
+.+++... ....++...+ .+++|+|||++|++++.+
T Consensus 137 ~~~g~~~~-l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 137 RPGDPPFQ-ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp STTSCCEE-CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred CCCCCcEE-EecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 98876432 1222222222 489999999999988743
Q ss_pred ---------cEEEEEccCCC------------------CCceeEeCCCCCEEEEEcC--C--CeEEEEE----CC--cee
Q psy16005 124 ---------GAKVSSLPIDY------------------EPSSISLDHEHGLVAVGGA--D--SKISIVE----NG--AKV 166 (248)
Q Consensus 124 ---------~~~i~~~~~~~------------------~~~~~~~~~~~~~~~~~~~--~--~~i~~~~----~~--~~~ 166 (248)
.+.+|++.... .+..++|+|+++++++... + ..|.+|| .. +..
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 34677765432 2367899999877766432 2 2477788 32 222
Q ss_pred eee-----cccCCCc-----eEEEcCCCCEEEE--EcCCC--cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 167 SSL-----PIDYEPS-----SISLDHEHGLVAV--GGADS--KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 167 ~~~-----~~~~~~~-----~~~~s~~~~~l~~--~~~d~--~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
..+ .+...+. .++|+|||+.++. +..+| .|++||+.+++. ..+. .+...+..+.++ +++.|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt-~~~~~v~~~~~~-d~~~i~~ 372 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQIT-SGKWEAINIFRV-TQDSLFY 372 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECS-CSSSCEEEEEEE-CSSEEEE
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eecc-cCceEEEEEEEE-eCCEEEE
Confidence 222 1233344 7899999995554 44555 577777776653 2222 455567887777 8877766
Q ss_pred EcCC-----CeEEEEECC
Q psy16005 233 SDAH-----RKVVLYRVP 245 (248)
Q Consensus 233 ~~~d-----~~i~vw~~~ 245 (248)
.+.+ +..++|.+.
T Consensus 373 ~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EESCGGGCTTCBEEEEEE
T ss_pred EEecCCCCCceEEEEEEe
Confidence 6554 788888764
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.87 E-value=9.5e-20 Score=140.27 Aligned_cols=219 Identities=9% Similarity=0.086 Sum_probs=146.1
Q ss_pred EEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecC------CcceEEEEECcCCcEEEEEcc--CCeE
Q psy16005 22 VLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEH------SCAVNVAKYSPSGFYIASGDI--SGKV 82 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~--dg~i 82 (248)
.++|+|||+++++++ ++.|.+||..+++....+... ......++++|||++|+++.. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 899999999998874 467999999998888776532 234567999999999998874 5799
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCC-CEEEEEeCCc-EEEEEccC----------------CCCCceeEeCCC
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN-QRMISIVENG-AKVSSLPI----------------DYEPSSISLDHE 144 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~-~~i~~~~~----------------~~~~~~~~~~~~ 144 (248)
.+||+.+++.+... +.. .....+.+.|++ ..+++.+.++ +.++++.. ...+..+...++
T Consensus 134 ~v~d~~~~~~~~~~-i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDV-TAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEE-GGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEEC
T ss_pred EEEECCCCcEEEEE-ecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEeccc
Confidence 99999998754320 221 111123333433 2222222222 22233221 112222334566
Q ss_pred CCEEEEEcCCCeEEEEECC-ce---eeeecc-----------cCCCceEEEcCCCCEEEEEcC-----------CCcEEE
Q psy16005 145 HGLVAVGGADSKISIVENG-AK---VSSLPI-----------DYEPSSISLDHEHGLVAVGGA-----------DSKVHI 198 (248)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~-~~---~~~~~~-----------~~~~~~~~~s~~~~~l~~~~~-----------d~~v~i 198 (248)
+..++..+.++.+.++|.. .. ...+.. ......++++|+++.++++.. .+.|.+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 7777777788999999942 11 111111 122334899999887777643 347999
Q ss_pred EEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 199 YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
||+.+++.+..+.. +. +.+++|+|||++|++++. +.|.+||..++
T Consensus 291 iD~~t~~~v~~i~~-~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 291 MDTKTKQRVARIPG-RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EETTTTEEEEEEEC-TT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EECCCCcEEEEEec-CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 99999988766653 33 899999999999998887 99999999887
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=4.2e-20 Score=143.48 Aligned_cols=224 Identities=10% Similarity=0.034 Sum_probs=148.8
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEE--ECcCCcEEEEE----------------
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAK--YSPSGFYIASG---------------- 76 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~---------------- 76 (248)
+...+....|+|||+.|+++. ++.+++||+.+++....+..+...+.... ++|++++++..
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchh
Confidence 333444678999999999887 77999999999987776666666554444 48999988742
Q ss_pred ------ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCC-------cEEEEEccCC---------
Q psy16005 77 ------DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVEN-------GAKVSSLPID--------- 133 (248)
Q Consensus 77 ------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~-------~~~i~~~~~~--------- 133 (248)
..+..|.+||+.+++.. .+..+...+..++|+| ||+.|+....+ .+.+++....
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 235 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGEST---VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA 235 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCCEE---EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC
T ss_pred hhhhccCCcceEEEEECCCCceE---EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC
Confidence 24468999999988643 2334456789999999 99999887754 2344443211
Q ss_pred --CCCceeEeCCCCCEEEEEcC-CC----eEEEEE--CCceeeeecccC------CCceEEEcCCCCEEEEE--------
Q psy16005 134 --YEPSSISLDHEHGLVAVGGA-DS----KISIVE--NGAKVSSLPIDY------EPSSISLDHEHGLVAVG-------- 190 (248)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~~~-~~----~i~~~~--~~~~~~~~~~~~------~~~~~~~s~~~~~l~~~-------- 190 (248)
..+....|+|+|+.|+..+. ++ .|++|| .++......... .+...+|+|||+.|+..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 315 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence 12345689999997755332 22 399999 333222111111 13445899999988754
Q ss_pred -cCCCcEEEEEcCCCCCCCcccccCCc-----------CeEEEEEcCCCcEEEEEc-CCCeEEEEEC
Q psy16005 191 -GADSKVHIYELNNKSLSPKAELDHLG-----------PVTDCSFSPSNEYLVASD-AHRKVVLYRV 244 (248)
Q Consensus 191 -~~d~~v~i~d~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~-~d~~i~vw~~ 244 (248)
..+..|++||+.+++... +. .+.. .+..++|+|||+.|+..+ .+|...||.+
T Consensus 316 ~~~~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 316 IENDPFLYVFNMKNGTQHR-VA-RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -CCCCEEEEEETTTTEEEE-EE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cCCCCEEEEEeccCCceEE-ec-cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 445689999999876532 22 3433 578899999999887665 4666666644
No 168
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.85 E-value=2.1e-18 Score=144.05 Aligned_cols=229 Identities=10% Similarity=-0.006 Sum_probs=157.3
Q ss_pred CCcEEEEeCCCCCEEEEeC--Cc----EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCe----------
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GN----SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK---------- 81 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~----~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---------- 81 (248)
..+..++|||||++|+++. +| .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 3577899999999999874 22 8999999998876643222 23678999999999998887765
Q ss_pred ------EEEEECCCCcee--eeeeccCCCCCeeEEEEecCCCEEEEEeC------CcEEEEEccC------CC-CCc---
Q psy16005 82 ------VRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDNQRMISIVE------NGAKVSSLPI------DY-EPS--- 137 (248)
Q Consensus 82 ------i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~~~~i~~~~~------~~-~~~--- 137 (248)
|++|++.+++.. .......+...+..+.|+|||++|+..+. ..+.+|++.. +. ...
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 999999887632 22233334556789999999999988763 2356777654 21 122
Q ss_pred ------eeEeCCCCCEEEEEcCC----CeEEEEECCce-----eeeecccC--CCceEEEcCCCCEEEEEcCCCc--EEE
Q psy16005 138 ------SISLDHEHGLVAVGGAD----SKISIVENGAK-----VSSLPIDY--EPSSISLDHEHGLVAVGGADSK--VHI 198 (248)
Q Consensus 138 ------~~~~~~~~~~~~~~~~~----~~i~~~~~~~~-----~~~~~~~~--~~~~~~~s~~~~~l~~~~~d~~--v~i 198 (248)
...+++++..++..+.. ..|..|+.... ...+.... .+..++|++++.++++...++. |++
T Consensus 284 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 284 DNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred CCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence 22467788877665543 36888983221 22223322 3567888877778888888874 666
Q ss_pred EEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE----cCCCeEEEEECCCCC
Q psy16005 199 YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS----DAHRKVVLYRVPDFE 248 (248)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~d~~i~vw~~~~~~ 248 (248)
|++.+++....+. .+.+.+..+.++|+++.++.. ...+.+++||+.+++
T Consensus 364 ~~~~~g~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 364 HDLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCCCCEEEecC-CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7776666443433 356778899999999766533 235799999998764
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.84 E-value=3.2e-17 Score=124.77 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=152.7
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC----CeEEEEECCCC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNK 90 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~ 90 (248)
+...+.+++|+|+|++++++. ++.|++||..+++.......+...+.+++++|+++++++...+ +.|.+||..++
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 345578999999999777765 7899999998887665444566789999999999988877666 68999999877
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-----cEEEEEccCC-----------CCCceeEeCCCCCEE-EEEcC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLPID-----------YEPSSISLDHEHGLV-AVGGA 153 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~ 153 (248)
..........+...+..++++|+|+.+++...+ ...+|.+... ..+..++++|+++.+ ++...
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 123 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred EEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCC
Confidence 643111112234578999999999877766532 2355554322 135678899999855 45566
Q ss_pred CCeEEEEEC---Cceeeee--------cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-----CCcC
Q psy16005 154 DSKISIVEN---GAKVSSL--------PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-----HLGP 217 (248)
Q Consensus 154 ~~~i~~~~~---~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-----~~~~ 217 (248)
++.|.+|+. +.....+ .....+..++++++|+++++...++.|.+||.. ++....+... |...
T Consensus 203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~ 281 (333)
T 2dg1_A 203 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLR 281 (333)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCB
T ss_pred CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccC
Confidence 789999983 2322211 111356789999999988777778899999984 4433333211 1126
Q ss_pred eEEEEEcCCCcEEEEEcCC
Q psy16005 218 VTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d 236 (248)
+.+++|+||++.|+.++.+
T Consensus 282 ~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 282 STHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CCEEEECTTSCEEEEEEEC
T ss_pred cceEEECCCCCEEEEEeCc
Confidence 8999999998777665544
No 170
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.84 E-value=1.8e-17 Score=122.81 Aligned_cols=202 Identities=12% Similarity=0.098 Sum_probs=156.1
Q ss_pred CCCEEEEeC-CcEEEEEecCCCceeeeeecCC-cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCe
Q psy16005 28 KGKNFLYTN-GNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI 105 (248)
Q Consensus 28 ~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 105 (248)
.+++|++++ ++.|++||.++++.+..+..+. ..+.++.++|+|++++ +.++.|..||. +++.+...... ....+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~-~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP-AGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC-TTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC-CCccc
Confidence 356777776 9999999998999998887765 4688999999999888 34778999999 78766544432 23468
Q ss_pred eEEEEecCCCEEEEEeC-Cc---------EEEEEccCC-------CCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceee
Q psy16005 106 KDIAWSPDNQRMISIVE-NG---------AKVSSLPID-------YEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVS 167 (248)
Q Consensus 106 ~~~~~~~~~~~l~~~~~-~~---------~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~ 167 (248)
.++.+.++|+.+++.+. ++ ..+|.+... ..+..+...++++++++...++.|..|| .++.+.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEE
Confidence 88999999999998776 22 223433321 1344567789999999999999999999 788888
Q ss_pred eecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-----CCcCeEEEEEcCCCcEEEEE
Q psy16005 168 SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-----HLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 168 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~ 233 (248)
.+.....+..+...++|..++++..++.|..+|..+++.+-..... ....+..+...++|..+++.
T Consensus 160 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 160 SVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 8887777888899999999999888889999999988875544311 12337888899999988776
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.84 E-value=2e-18 Score=132.08 Aligned_cols=212 Identities=13% Similarity=0.157 Sum_probs=146.1
Q ss_pred CCcEEEEeCCCCCEEEEeC--C--c--EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC------------
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--G--N--SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS------------ 79 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~--~--~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------ 79 (248)
..+..++|||||+.|++.+ + + .|++|++.+++....... .. +..++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 4577899999999998875 2 3 488889888776654433 34 9999999999998887642
Q ss_pred ---------------CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC--------cEEEEEccCCCCC
Q psy16005 80 ---------------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN--------GAKVSSLPIDYEP 136 (248)
Q Consensus 80 ---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--------~~~i~~~~~~~~~ 136 (248)
..|.+||+.+++.+. .+.. . .+..++|+||| .++++..+ ...+|.++ ....
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~--~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~ 210 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIE--EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKE 210 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEE--EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEe--eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCce
Confidence 579999998877522 2222 2 68899999999 76666543 34666665 2221
Q ss_pred -------ceeEeCCCCCEEEEEcCC--------CeEEEEECCceeeeec-c-cCCCce-EEEcCCCCEEEEEcCCCcEEE
Q psy16005 137 -------SSISLDHEHGLVAVGGAD--------SKISIVENGAKVSSLP-I-DYEPSS-ISLDHEHGLVAVGGADSKVHI 198 (248)
Q Consensus 137 -------~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~-~-~~~~~~-~~~s~~~~~l~~~~~d~~v~i 198 (248)
....++|+|+.++..+.+ ..|.+|| ......+. . ...+.. +.|+ ++ ++++++.++.++|
T Consensus 211 ~~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 211 EKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp EEEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred EEeccCcceeeECCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 122348899988776643 4688888 33333332 2 334564 8899 88 8889999999999
Q ss_pred EEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeE-EEEECC
Q psy16005 199 YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV-VLYRVP 245 (248)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i-~vw~~~ 245 (248)
| +.+++. ... ..+...|.+++|+| ..+++++.++.. .+|.++
T Consensus 288 ~-~~~g~~-~~~-~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEI-KPI-AKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSE-EEE-ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCce-EEE-ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 875443 222 24577899999999 667777666554 677653
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=2.9e-20 Score=144.62 Aligned_cols=213 Identities=8% Similarity=-0.039 Sum_probs=145.1
Q ss_pred cEEEEeCCCCCEEEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 20 PIVLGGDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
+..++|||||++|++.. +..|++||+.+++.......+......+.|+|||+.|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 67789999999988764 24799999988876554433332233478999999999999999999999988774322
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCCCCCceeEeCCCCCEEEEE-----cCCCeEEEEE--CCceee
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPIDYEPSSISLDHEHGLVAVG-----GADSKISIVE--NGAKVS 167 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~--~~~~~~ 167 (248)
.. .+.. |+++|+.|+....+.. .+|. ....++|+++.++.. ..+..|++|| .++...
T Consensus 118 ~~--~~~~------~~~~g~~l~~~~~~~~~~~~~-------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 182 (396)
T 3c5m_A 118 YT--VDEE------WKGYGTWVANSDCTKLVGIEI-------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV 182 (396)
T ss_dssp EE--CCTT------EEEEEEEEECTTSSEEEEEEE-------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE
T ss_pred Ee--cccc------cCCCCCEEEeccCCccccccc-------cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe
Confidence 22 2222 7778877776654443 3332 134577888876654 3566788898 344444
Q ss_pred eecccCCCceEEEcC-CCCEEEEEcCC------CcEEEEEcCCCCCCCcccccC-CcCeEEEEEcCCCcEEEEEcCC---
Q psy16005 168 SLPIDYEPSSISLDH-EHGLVAVGGAD------SKVHIYELNNKSLSPKAELDH-LGPVTDCSFSPSNEYLVASDAH--- 236 (248)
Q Consensus 168 ~~~~~~~~~~~~~s~-~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d--- 236 (248)
.......+..+.|+| +++.|+..+.+ ..|.+||+.+++...... .. ...+..++|+|||++|+.++.+
T Consensus 183 ~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (396)
T 3c5m_A 183 IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQ 261 (396)
T ss_dssp EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEecCCCC
Confidence 444455678899999 88877765543 368889987665422221 11 3357889999999988776543
Q ss_pred --CeEEEEECCCCC
Q psy16005 237 --RKVVLYRVPDFE 248 (248)
Q Consensus 237 --~~i~vw~~~~~~ 248 (248)
+.|++||+.+++
T Consensus 262 ~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 262 TDRVIYKANPETLE 275 (396)
T ss_dssp CCEEEEEECTTTCC
T ss_pred ccceEEEEECCCCC
Confidence 459999998764
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=2e-18 Score=143.06 Aligned_cols=227 Identities=9% Similarity=0.015 Sum_probs=155.4
Q ss_pred cccCCcEEEEeCCCCCEEEEe--C-CcEEEEEecCCCceeeeeecCCcceE---------EEEEC--cCCcE-EEEEcc-
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYT--N-GNSVIIRNIENPAISDIYTEHSCAVN---------VAKYS--PSGFY-IASGDI- 78 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~--~-~~~v~v~~~~~~~~~~~~~~~~~~v~---------~~~~s--~~~~~-l~~~~~- 78 (248)
.|...+..++|++++-+++.. + ++...||....+...+.+..+...+. ...|+ |||+. |+.++.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 467789999999887666666 3 67888998654445555666665555 56565 99988 776543
Q ss_pred CCeEEEEECC--C-CceeeeeeccC-----CCCCeeEEEEecCCCEEEEEeCC-----------cEEEEEccC------C
Q psy16005 79 SGKVRIWDTV--N-KEHILKNEFHP-----IGGPIKDIAWSPDNQRMISIVEN-----------GAKVSSLPI------D 133 (248)
Q Consensus 79 dg~i~iwd~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~-----------~~~i~~~~~------~ 133 (248)
+..|.++++. + ++. ..+.. |...+..++|+|||+.|++++.+ .+.+|++.. .
T Consensus 101 ~~~l~~~~~~~~g~~~~---~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVP---RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp TCCEEEECTTSTTCCCC---EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred CCeEEEEcCCCCCCCCC---EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 5677777776 3 432 23333 56678899999999999988754 356777655 1
Q ss_pred C----------CCceeEeCCCCCEEEEEcCC--------CeEEEEECC--c---eeeeec-c-cCCCceEEEcCCCCEEE
Q psy16005 134 Y----------EPSSISLDHEHGLVAVGGAD--------SKISIVENG--A---KVSSLP-I-DYEPSSISLDHEHGLVA 188 (248)
Q Consensus 134 ~----------~~~~~~~~~~~~~~~~~~~~--------~~i~~~~~~--~---~~~~~~-~-~~~~~~~~~s~~~~~l~ 188 (248)
. ....+.|+|||+.|+..+.+ ..|++||.. . ....+. . ...+..++|+|||++++
T Consensus 178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~ 257 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIV 257 (662)
T ss_dssp GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEE
T ss_pred ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEE
Confidence 1 12346799999999877644 378999832 2 333332 2 45678899999999888
Q ss_pred EEcCCC--cEEEEEcCCCCCCCcccccCCcC--------eEEEEEcCCCcEEEEEcCCCeEEEE--ECCC
Q psy16005 189 VGGADS--KVHIYELNNKSLSPKAELDHLGP--------VTDCSFSPSNEYLVASDAHRKVVLY--RVPD 246 (248)
Q Consensus 189 ~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~~~~~d~~i~vw--~~~~ 246 (248)
++..++ .|++||+.+++...... .+... +..++|+|+++++++++. +.++|| |+.+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 258 ATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES 325 (662)
T ss_dssp EECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred EECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence 888888 56666665665422221 22221 567899999999999988 999999 5444
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.83 E-value=1.1e-17 Score=125.41 Aligned_cols=224 Identities=12% Similarity=-0.001 Sum_probs=157.1
Q ss_pred ccCCcEEEEeCCCCC-EEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 16 QRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
......+++|+|+|+ +++++. ++.|+.|+..++ ...+..+...+.+++++|+|+++++...++.|.+||..+++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 345577899999998 555554 889999998876 5556667778999999999998888777889999999777643
Q ss_pred eeeec-c-CCCCCeeEEEEecCCCEEEEEeC----------------CcEEEEEccCC----------CCCceeEeCCCC
Q psy16005 94 LKNEF-H-PIGGPIKDIAWSPDNQRMISIVE----------------NGAKVSSLPID----------YEPSSISLDHEH 145 (248)
Q Consensus 94 ~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~----------------~~~~i~~~~~~----------~~~~~~~~~~~~ 145 (248)
..... . .....+..++++|+|+.+++... ....+|.+... ..+..++++|++
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSG 183 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTS
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCC
Confidence 21111 1 11235678999999998876321 12255555432 235678999999
Q ss_pred CEEEEEcCCCeEEEEEC---Cce---eeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCe
Q psy16005 146 GLVAVGGADSKISIVEN---GAK---VSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPV 218 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~~---~~~---~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v 218 (248)
+.+++...++.|.+|+. +.. ...+. ....+..++++++|+++++. ++.|.+||.. ++....+. .+.. +
T Consensus 184 ~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~-~~~~-~ 258 (296)
T 3e5z_A 184 NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL-TPQT-T 258 (296)
T ss_dssp CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE-CSSC-C
T ss_pred CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE-CCCC-c
Confidence 98877778899999983 332 22221 23456789999999866665 7889999987 44433333 3444 8
Q ss_pred EEEEE-cCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 219 TDCSF-SPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 219 ~~~~~-s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.+++| +|+++.|++++.+ .+.-++.++.
T Consensus 259 ~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred eeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 99999 6899988888765 4445555543
No 175
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.82 E-value=4.7e-17 Score=120.16 Aligned_cols=225 Identities=10% Similarity=0.044 Sum_probs=156.9
Q ss_pred CcEEEEeCCCCCEEE-Ee-CCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee
Q psy16005 19 QPIVLGGDPKGKNFL-YT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~-~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (248)
.+.+++++|+|++++ +. .++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||....... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 788999999999766 43 378999999766543322223335678899999999666655 889999998765432 11
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEECC-c
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVENG-A 164 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 164 (248)
. ......+..++++++|+.+++... +.+.+++... ...+..++++++++++++...++.|..|+.. .
T Consensus 103 ~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 103 P-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp C-CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred e-cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 1 122356899999999986665543 3455554321 1246789999999988887788899999933 2
Q ss_pred eeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 165 KVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 165 ~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
...... ....+..++++++|.++++...++.|.+||..+..... ....+...+.+++++|+|+.+++...++.|+++
T Consensus 182 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 182 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEE
Confidence 222221 12457889999999877777778899999987654322 222334568999999999988888889999999
Q ss_pred ECCCC
Q psy16005 243 RVPDF 247 (248)
Q Consensus 243 ~~~~~ 247 (248)
++...
T Consensus 261 ~~~~~ 265 (270)
T 1rwi_B 261 TSLEH 265 (270)
T ss_dssp CCCGG
T ss_pred cCCCc
Confidence 98653
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.82 E-value=6.6e-18 Score=129.23 Aligned_cols=209 Identities=18% Similarity=0.116 Sum_probs=141.9
Q ss_pred CCcEEEEeCCCCCEEEEeC----------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---C--eE
Q psy16005 18 GQPIVLGGDPKGKNFLYTN----------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---G--KV 82 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~----------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g--~i 82 (248)
..+...++ ||+.+++.. ++.|++|++.+++... + ..+..++|||||+.|+..+.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45667778 999888752 4679999998876543 3 567899999999999887654 3 47
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC----------------------------cEEEEEccCCC
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN----------------------------GAKVSSLPIDY 134 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------------------------~~~i~~~~~~~ 134 (248)
.+||+.+++...... +.. +..++|+|||+.|+.++.+ .+.+|++....
T Consensus 88 ~~~~~~~g~~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 163 (347)
T 2gop_A 88 WVADLETLSSKKILE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE 163 (347)
T ss_dssp EEEETTTTEEEEEEE---ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred EEEECCCCceEEEEc---CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence 888888776432222 223 8999999999999888632 23555554322
Q ss_pred --------CCceeEeCCCCCEEEEEcCC---------CeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCC----
Q psy16005 135 --------EPSSISLDHEHGLVAVGGAD---------SKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD---- 193 (248)
Q Consensus 135 --------~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---- 193 (248)
.+..+.|+|++ +++++..+ ..|..++.+ ....+...... ..++|||+.|+.++.+
T Consensus 164 ~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l~~~~~~--~~~spdg~~l~~~~~~~~~~ 239 (347)
T 2gop_A 164 VIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKMFEKVSF--YAVDSDGERILLYGKPEKKY 239 (347)
T ss_dssp EEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEEEEEESE--EEEEECSSCEEEEECCSSSC
T ss_pred EEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ceEEeccCcce--eeECCCCCEEEEEEccccCC
Confidence 35577899999 77776543 246667733 33333322222 3349999988877643
Q ss_pred ----CcEEEEEcCCCCCCCcccccCCcCeEE-EEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 194 ----SKVHIYELNNKSLSPKAELDHLGPVTD-CSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 194 ----~~v~i~d~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
..|++|| +++. ..+...+...+.. +.|+ |+ ++++++.++.++|| +.++
T Consensus 240 ~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 240 MSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp CCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred ccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 3677887 4443 2233346677886 9999 88 88888999999999 7643
No 177
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=6e-18 Score=130.52 Aligned_cols=186 Identities=12% Similarity=0.138 Sum_probs=132.6
Q ss_pred CcEEEEeCCCCCE--EEEe--------------CCcEEEEEecC-CCceeeeee----cCCcceEEEEECcCCcEEEEEc
Q psy16005 19 QPIVLGGDPKGKN--FLYT--------------NGNSVIIRNIE-NPAISDIYT----EHSCAVNVAKYSPSGFYIASGD 77 (248)
Q Consensus 19 ~v~~~~~s~~~~~--l~~~--------------~~~~v~v~~~~-~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~ 77 (248)
.+.+++|+|||++ ++++ .++.+.+|++. .++....+. .+...+.+++|+|||++|++++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 3556899999994 4444 47789999997 465544333 2456789999999999888765
Q ss_pred -cCCeEEEEECC-CCceeeeeecc--CCCCCeeEEEEecCCCEEEEEeC--CcEEEEEccC--C----------------
Q psy16005 78 -ISGKVRIWDTV-NKEHILKNEFH--PIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLPI--D---------------- 133 (248)
Q Consensus 78 -~dg~i~iwd~~-~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~~--~---------------- 133 (248)
.++.|++||+. +++......+. .+...+..++|+|||++++++.. +.+.+|+++. .
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 46799999998 66643222232 24567899999999999988874 3457776531 0
Q ss_pred ---C-------CCceeE-eCCCCCEEEEEcCC-C-----eEEEEEC---Cceee---eec-ccCCCceEEEcC---CCCE
Q psy16005 134 ---Y-------EPSSIS-LDHEHGLVAVGGAD-S-----KISIVEN---GAKVS---SLP-IDYEPSSISLDH---EHGL 186 (248)
Q Consensus 134 ---~-------~~~~~~-~~~~~~~~~~~~~~-~-----~i~~~~~---~~~~~---~~~-~~~~~~~~~~s~---~~~~ 186 (248)
. .+..++ ++|++++++++..+ . .|.+|+. ++... ... ....+..++|+| ||++
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~ 323 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE
Confidence 0 245688 99999988776543 2 8999982 33322 122 334578899999 8999
Q ss_pred EEEEcCC-CcEEEEEcCCC
Q psy16005 187 VAVGGAD-SKVHIYELNNK 204 (248)
Q Consensus 187 l~~~~~d-~~v~i~d~~~~ 204 (248)
|++++.+ +.|.+|++...
T Consensus 324 l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 324 MAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEECSSSCEEEEEEEETT
T ss_pred EEEEEcCCCeEEEEEEchh
Confidence 9999864 89999999765
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=3.9e-18 Score=141.31 Aligned_cols=220 Identities=11% Similarity=0.035 Sum_probs=146.4
Q ss_pred EEEe--CCCCCE-EEEeC--CcEEEEEecC--C-Cceeeeeec-----CCcceEEEEECcCCcEEEEEccC---------
Q psy16005 22 VLGG--DPKGKN-FLYTN--GNSVIIRNIE--N-PAISDIYTE-----HSCAVNVAKYSPSGFYIASGDIS--------- 79 (248)
Q Consensus 22 ~~~~--s~~~~~-l~~~~--~~~v~v~~~~--~-~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d--------- 79 (248)
...| ||||+. |++++ +..|+++++. . ++ ...+.. |...+.+++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 3444 499998 88776 4677777765 3 43 344444 66788999999999999988876
Q ss_pred -CeEEEEECCC------Cceeeeeecc-CCCCCeeEEEEecCCCEEEEEeCC---------cEEEEEccC-C--------
Q psy16005 80 -GKVRIWDTVN------KEHILKNEFH-PIGGPIKDIAWSPDNQRMISIVEN---------GAKVSSLPI-D-------- 133 (248)
Q Consensus 80 -g~i~iwd~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~---------~~~i~~~~~-~-------- 133 (248)
..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.+ .+.+|++.. .
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l 236 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAV---RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL 236 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGS---EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred eeEEEEEECCCCccccCCce---eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence 5899999987 442 2333 455678889999999999887633 246666652 2
Q ss_pred -----CCCceeEeCCCCCEEEEEcCCC--eEEEEE--CCceeeeecccCC---------CceEEEcCCCCEEEEEcCCCc
Q psy16005 134 -----YEPSSISLDHEHGLVAVGGADS--KISIVE--NGAKVSSLPIDYE---------PSSISLDHEHGLVAVGGADSK 195 (248)
Q Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~--~i~~~~--~~~~~~~~~~~~~---------~~~~~~s~~~~~l~~~~~d~~ 195 (248)
..+..+.|+|+|++++++..++ .|..|+ .++.......... +..++++|+++++++++. +.
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~ 315 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA 315 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence 2345678999999888888888 566666 3333322222211 457889999999999998 99
Q ss_pred EEEE--EcCCCCCCCcccccCCcCeEEE-EEcCCCcEEEEEcCCC--eEEEEECCCCC
Q psy16005 196 VHIY--ELNNKSLSPKAELDHLGPVTDC-SFSPSNEYLVASDAHR--KVVLYRVPDFE 248 (248)
Q Consensus 196 v~i~--d~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~--~i~vw~~~~~~ 248 (248)
++|| |+.+++. ..+ ..+...+..+ +++++.-++++++.+. .|.++|+.+++
T Consensus 316 ~~l~~~d~~~~~~-~~l-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 316 AVLGILDPESGEL-VDA-AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CEEEEEETTTTEE-EEC-CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred cEEEEEECCCCcE-EEe-cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8998 5555543 222 2466667766 4443333334445454 45566665653
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=1.5e-18 Score=134.96 Aligned_cols=219 Identities=13% Similarity=0.051 Sum_probs=144.0
Q ss_pred EEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEE-------------------EEECcCCcEEEEE-----
Q psy16005 22 VLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNV-------------------AKYSPSGFYIASG----- 76 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~----- 76 (248)
.+.|+|||+.|+++. ++.|++|++.+++.......+...... +.|+|+++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 378999999998775 778999999988766655544432222 3567777766654
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCC-------cEEEEEccCCC-----------CCc
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVEN-------GAKVSSLPIDY-----------EPS 137 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~-------~~~i~~~~~~~-----------~~~ 137 (248)
..+..|.+||+.+++... +..+...+..+.|+| +++.|+..+.+ .+.++++.... .+.
T Consensus 165 ~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEV---IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT 241 (396)
T ss_dssp CCCEEEEEEETTTCCEEE---EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred CCcceEEEEECCCCcEEe---eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence 356689999998877432 223456789999999 88878777643 24555543211 234
Q ss_pred eeEeCCCCCEEEEEcCC-----CeEEEEEC--CceeeeecccCCCceEEEcC-CCCEEEEEc----------------CC
Q psy16005 138 SISLDHEHGLVAVGGAD-----SKISIVEN--GAKVSSLPIDYEPSSISLDH-EHGLVAVGG----------------AD 193 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~~-----~~i~~~~~--~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~----------------~d 193 (248)
.+.|+|+++.++..+.+ +.|++||. ++........ ... +.|+| ||+++++++ .+
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 56899999977766433 44999993 3322222122 122 88999 999888754 34
Q ss_pred CcEEEEEcCCCCCCCcccccCCc-----------CeEEEEEcCCCcEEEEEcC-CCe--EEEEECCCC
Q psy16005 194 SKVHIYELNNKSLSPKAELDHLG-----------PVTDCSFSPSNEYLVASDA-HRK--VVLYRVPDF 247 (248)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~-d~~--i~vw~~~~~ 247 (248)
..|++||+.+++.. .+. .+.. .+..++|+|||+.|+.++. ++. |.+.++.++
T Consensus 320 ~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQ-KLC-KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp CEEEEEETTTTBCC-EEE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred CcEEEEecccCceE-Ecc-CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 68999999887753 222 3333 2567899999998877654 454 444455544
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.81 E-value=2.6e-16 Score=119.61 Aligned_cols=223 Identities=10% Similarity=0.048 Sum_probs=154.9
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
.+..+.+.. ++.+++.. ++.|.++|..+++.+..+.. ......++++++++.+++...++.|.+||..+++......
T Consensus 45 ~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 456777743 33444444 78999999999999888753 4568899999998655555488999999999887543333
Q ss_pred ccC---CCCCeeEEEEecCCCEEEEEe---CCcEEEEEcc---------CCCCCceeEeCCCCCEEEEEcCC--------
Q psy16005 98 FHP---IGGPIKDIAWSPDNQRMISIV---ENGAKVSSLP---------IDYEPSSISLDHEHGLVAVGGAD-------- 154 (248)
Q Consensus 98 ~~~---~~~~v~~~~~~~~~~~l~~~~---~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-------- 154 (248)
... .......+++ . +..++++. .+.+.+++.. ....+..+.+++++++++++..+
T Consensus 123 ~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp CTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred cCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCcccc
Confidence 321 0114566777 3 44555544 3445666653 34557788999999988777655
Q ss_pred --CeEEEEE--CCceeeeecc--cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-CCcCeEEEEEcCC-
Q psy16005 155 --SKISIVE--NGAKVSSLPI--DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPS- 226 (248)
Q Consensus 155 --~~i~~~~--~~~~~~~~~~--~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~- 226 (248)
+.|.++| +++....+.. ...+..++++|+++.|+++.. .|.+||..+++........ .......++++|+
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~ 278 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN 278 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC
Confidence 7899999 3455555554 346899999999999888765 8999999988764322212 2467899999995
Q ss_pred CcEEEEE----cCCCeEEEEECCCCC
Q psy16005 227 NEYLVAS----DAHRKVVLYRVPDFE 248 (248)
Q Consensus 227 ~~~l~~~----~~d~~i~vw~~~~~~ 248 (248)
+..+++. ..++.|.+||.+ ++
T Consensus 279 g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 279 GEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred CeEEEEcccccccCCEEEEECCC-CC
Confidence 5555555 567999999986 53
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.81 E-value=3.4e-18 Score=142.43 Aligned_cols=230 Identities=10% Similarity=0.004 Sum_probs=151.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeC------CcEEEEEecCCCcee-eeeecCCcceEEEEECcCCcEEEEEccCCe-------
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSPSGFYIASGDISGK------- 81 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~------~~~v~v~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~------- 81 (248)
|...+.+++|||||++|+.+. +..|++||+.+++.. ..... ......++|+|||+.|+.++.+..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC-cccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 444688999999999999652 358999999998865 21111 111267899999999999888765
Q ss_pred ------EEEEECCCCcee--eeeeccCCCCCeeEEEEecCCCEEEEEeCCc---EEEEEccCCC-C----------Ccee
Q psy16005 82 ------VRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDNQRMISIVENG---AKVSSLPIDY-E----------PSSI 139 (248)
Q Consensus 82 ------i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~i~~~~~~~-~----------~~~~ 139 (248)
|++|++.+++.. .......+...+..+.|+|||++|+..+.++ ..+|.++... . ....
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 277 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV 277 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE
Confidence 999999887632 2234444556788999999999988776433 3555543321 1 1222
Q ss_pred EeCCCCCEEEEEc---CCCeEEEEEC--Cce---eeeecc--cCCCceEEEcCCCCEEEEEcCCCcEEEEEcC-CCCCCC
Q psy16005 140 SLDHEHGLVAVGG---ADSKISIVEN--GAK---VSSLPI--DYEPSSISLDHEHGLVAVGGADSKVHIYELN-NKSLSP 208 (248)
Q Consensus 140 ~~~~~~~~~~~~~---~~~~i~~~~~--~~~---~~~~~~--~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~-~~~~~~ 208 (248)
.+ +++.+++... .++.|..|+. +.. ...+.. ...+..++++ ++.++++...|+..+||.+. +++...
T Consensus 278 ~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 355 (695)
T 2bkl_A 278 HA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR 355 (695)
T ss_dssp EE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE
T ss_pred Ee-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE
Confidence 33 4555444443 2578999983 221 222332 2235667777 66788888889887777665 333323
Q ss_pred cccccCCcCeEEEEEcCCCcEEEEE----cCCCeEEEEECCCCC
Q psy16005 209 KAELDHLGPVTDCSFSPSNEYLVAS----DAHRKVVLYRVPDFE 248 (248)
Q Consensus 209 ~~~~~~~~~v~~~~~s~~~~~l~~~----~~d~~i~vw~~~~~~ 248 (248)
.+.....+.+..++++|+++.++.. ...+.|++||+.+++
T Consensus 356 ~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 356 TVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3332336678888999999877633 335789999998764
No 182
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=8.4e-17 Score=134.95 Aligned_cols=231 Identities=11% Similarity=0.086 Sum_probs=145.0
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee-cCCcce-----------------EEEEECcCCcEEEEEc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-EHSCAV-----------------NVAKYSPSGFYIASGD 77 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~-~~~~~v-----------------~~~~~s~~~~~l~~~~ 77 (248)
+.+.+...+|||||+.||++.++.|++|++.+++..+... ++...+ .++.|||||+.||.++
T Consensus 110 ~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 110 IPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 4567899999999999999999999999998877554322 222222 3489999999999875
Q ss_pred cCC------------------------------------eEEEEECCC---Cceeeeeecc------CCCCCeeEEEEec
Q psy16005 78 ISG------------------------------------KVRIWDTVN---KEHILKNEFH------PIGGPIKDIAWSP 112 (248)
Q Consensus 78 ~dg------------------------------------~i~iwd~~~---~~~~~~~~~~------~~~~~v~~~~~~~ 112 (248)
.|. +|++||+.+ ++......+. ++...+..++|+|
T Consensus 190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 321 588899988 6321112222 3677899999999
Q ss_pred CCCEEEEEeCC-----cEEEEEccCCC------------------C-----CceeEeCCCCCEEE-EEc-CCC--eEEEE
Q psy16005 113 DNQRMISIVEN-----GAKVSSLPIDY------------------E-----PSSISLDHEHGLVA-VGG-ADS--KISIV 160 (248)
Q Consensus 113 ~~~~l~~~~~~-----~~~i~~~~~~~------------------~-----~~~~~~~~~~~~~~-~~~-~~~--~i~~~ 160 (248)
||+.++..... .+.+|++.... . .....|+|+|+.++ ..+ .+| .|++|
T Consensus 270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 99977665422 25677765432 0 22678999999776 554 343 57778
Q ss_pred E-CCceeeeec-ccCCCceEEEcCCCCEEE-EEcC----CC--cEEEEEcCCCCCCCccc---ccCCcCeEEEEEcCCCc
Q psy16005 161 E-NGAKVSSLP-IDYEPSSISLDHEHGLVA-VGGA----DS--KVHIYELNNKSLSPKAE---LDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 161 ~-~~~~~~~~~-~~~~~~~~~~s~~~~~l~-~~~~----d~--~v~i~d~~~~~~~~~~~---~~~~~~v~~~~~s~~~~ 228 (248)
+ .+.....+. ....+..+. .+|++.|+ +++. .+ .|+..++..+.....+. .+.......+.|||+++
T Consensus 350 ~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~ 428 (740)
T 4a5s_A 350 QIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAK 428 (740)
T ss_dssp ETTCSSCEESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSS
T ss_pred ECCCCceEecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCC
Confidence 8 333333333 344444433 24466554 4443 23 34444554433211111 12345688999999999
Q ss_pred EEEEEcCC---CeEEEEECCCC
Q psy16005 229 YLVASDAH---RKVVLYRVPDF 247 (248)
Q Consensus 229 ~l~~~~~d---~~i~vw~~~~~ 247 (248)
+++..... ..+.+++..++
T Consensus 429 ~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 429 YYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EEEEEECSBSSCEEEEEETTTT
T ss_pred EEEEEeCCCCCCEEEEEECCCC
Confidence 87655332 46777777654
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.79 E-value=3.5e-17 Score=124.58 Aligned_cols=223 Identities=11% Similarity=0.073 Sum_probs=157.4
Q ss_pred CCcEEEEeCCCCCEEEEe-CCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee
Q psy16005 18 GQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (248)
..+.+++|+|++..++.. .++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-- 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-- 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE--
Confidence 457788999998777665 47788888 344555566676778999999999988888889999999998876432
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeCC-----cEEEEEccCC------------CCCceeEeCCCCCEEEEEcC------
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLPID------------YEPSSISLDHEHGLVAVGGA------ 153 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~~------ 153 (248)
....+...+.+++++|+|+.+++...+ ++.+|+.... ..+..+.++|+++++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 222345789999999999887777655 5677764321 23567889999988877654
Q ss_pred CCeEEEEEC-Cceeeee-cccCCCceEEEcCCCCEEEE-EcCCCcEEEEEcCC-CCCCCcc----c--ccCCcCeEEEEE
Q psy16005 154 DSKISIVEN-GAKVSSL-PIDYEPSSISLDHEHGLVAV-GGADSKVHIYELNN-KSLSPKA----E--LDHLGPVTDCSF 223 (248)
Q Consensus 154 ~~~i~~~~~-~~~~~~~-~~~~~~~~~~~s~~~~~l~~-~~~d~~v~i~d~~~-~~~~~~~----~--~~~~~~v~~~~~ 223 (248)
.+.|..++. +.....+ .....+..++++|+++.+++ ...++.|.+||+.+ +...... . ......+..+++
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 240 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI 240 (333)
T ss_dssp CEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred CceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEE
Confidence 356777773 2223222 22345688999999986654 45678999999964 3321110 0 011136788999
Q ss_pred cCCCcEEEEEcCCCeEEEEECC
Q psy16005 224 SPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 224 s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+++|+++++...++.|.+||.+
T Consensus 241 d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 241 DSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp BTTCCEEEEEETTTEEEEECTT
T ss_pred CCCCCEEEEEcCCCEEEEECCC
Confidence 9999988887778899999874
No 184
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.79 E-value=1.8e-15 Score=113.96 Aligned_cols=227 Identities=8% Similarity=0.040 Sum_probs=154.7
Q ss_pred cCCcEEEEeCCCCCEEEE-------e-CCcEEEEEecCCCceeeeee----cCCcceEEEEECcC-CcEEEEEccCCeEE
Q psy16005 17 RGQPIVLGGDPKGKNFLY-------T-NGNSVIIRNIENPAISDIYT----EHSCAVNVAKYSPS-GFYIASGDISGKVR 83 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~-------~-~~~~v~v~~~~~~~~~~~~~----~~~~~v~~~~~s~~-~~~l~~~~~dg~i~ 83 (248)
...+.+++|+++|+++++ . .++.|.+||..+++...... ++...+.+++++++ ++++++.. .+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 346789999999988877 3 37899999988777543221 14467899999999 77555544 44799
Q ss_pred EEECCCCceeee-eecc--CCCCCeeEEEEecCCCEEEEEeCCc--------------EEEEEccCC----------CCC
Q psy16005 84 IWDTVNKEHILK-NEFH--PIGGPIKDIAWSPDNQRMISIVENG--------------AKVSSLPID----------YEP 136 (248)
Q Consensus 84 iwd~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~--------------~~i~~~~~~----------~~~ 136 (248)
+||.. ++.... .... .....+.+++++++|+.+++...++ ..+|.+... ..+
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~ 174 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP 174 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCc
Confidence 99988 653211 1111 1124588999999998777765431 344444322 234
Q ss_pred ceeEeC----CCCCEE-EEEcCCCeEEEEEC---Cce-----eeeeccc--CCCceEEEcCCCCEEEEEcCCCcEEEEEc
Q psy16005 137 SSISLD----HEHGLV-AVGGADSKISIVEN---GAK-----VSSLPID--YEPSSISLDHEHGLVAVGGADSKVHIYEL 201 (248)
Q Consensus 137 ~~~~~~----~~~~~~-~~~~~~~~i~~~~~---~~~-----~~~~~~~--~~~~~~~~s~~~~~l~~~~~d~~v~i~d~ 201 (248)
..++++ ++++.+ ++...++.|..|+. ++. ...+... ..+..++++++|+++++...++.|.+||.
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence 567888 998655 44467789999982 321 1122212 34678999999998887777889999999
Q ss_pred CCCCCCCcccccCCcCeEEEEEcCCCcEEE-EEcCCCeEEEEECCC
Q psy16005 202 NNKSLSPKAELDHLGPVTDCSFSPSNEYLV-ASDAHRKVVLYRVPD 246 (248)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~vw~~~~ 246 (248)
++++...... .+...+.+++|+|+++.|+ +...++.|..|++..
T Consensus 255 ~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 255 DGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8776544443 3456789999999999554 455678999999764
No 185
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.5e-16 Score=122.37 Aligned_cols=220 Identities=9% Similarity=0.021 Sum_probs=148.1
Q ss_pred CCCCEEEEeC-------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------cCCeEEEEECCC
Q psy16005 27 PKGKNFLYTN-------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVN 89 (248)
Q Consensus 27 ~~~~~l~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~ 89 (248)
++++++++.. |+.|++||..+++....+..+..+ .++|+||++++++++ .++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3566666542 569999999999988888766555 899999999999886 367899999988
Q ss_pred CceeeeeeccC----CCCCeeEEEEecCCCEEEEEeC---CcEEEEEccCCCCCce---------eEeCCCC-CEEEEEc
Q psy16005 90 KEHILKNEFHP----IGGPIKDIAWSPDNQRMISIVE---NGAKVSSLPIDYEPSS---------ISLDHEH-GLVAVGG 152 (248)
Q Consensus 90 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~~---------~~~~~~~-~~~~~~~ 152 (248)
.+.+....+.. +......++++|||++|+++.. +.+.+|++.....+.. +.+.|++ ..+++.+
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence 77654333321 2345778999999999998863 3468888765443332 3355654 5777888
Q ss_pred CCCeEEEEEC---Cceeee------ecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc--------cc--
Q psy16005 153 ADSKISIVEN---GAKVSS------LPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE--------LD-- 213 (248)
Q Consensus 153 ~~~~i~~~~~---~~~~~~------~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--------~~-- 213 (248)
.||.+..++. ++.... +.....+..+..+|++..++..+.++.|.++|+.......... ..
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~ 250 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN 250 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence 8999888872 433311 1222223344557788877878888999999997654211000 00
Q ss_pred -CCcCeEEEEEcCCCcEEEEEcC-----------CCeEEEEECCCCC
Q psy16005 214 -HLGPVTDCSFSPSNEYLVASDA-----------HRKVVLYRVPDFE 248 (248)
Q Consensus 214 -~~~~v~~~~~s~~~~~l~~~~~-----------d~~i~vw~~~~~~ 248 (248)
.......++|+|+++.++.+.. .+.|.+||+.+++
T Consensus 251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~ 297 (361)
T 2oiz_A 251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ 297 (361)
T ss_dssp CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE
T ss_pred cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc
Confidence 0111223789999888776543 3589999998764
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.76 E-value=3.1e-15 Score=115.37 Aligned_cols=217 Identities=9% Similarity=-0.062 Sum_probs=140.3
Q ss_pred EEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecC-------CcceEEEEECcCCcEEEEEcc--CCe
Q psy16005 22 VLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEH-------SCAVNVAKYSPSGFYIASGDI--SGK 81 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~--dg~ 81 (248)
.+++||||+++++++ ++.|.++|..+.+....+... ......+.|+|||++|++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999874 468999999988877765422 123458999999999998874 478
Q ss_pred EEEEECCCCceeee-eeccCCCCCeeEEEEecCCCE-EEEEeCC-cEEEEEccCCCCC----------------ceeEeC
Q psy16005 82 VRIWDTVNKEHILK-NEFHPIGGPIKDIAWSPDNQR-MISIVEN-GAKVSSLPIDYEP----------------SSISLD 142 (248)
Q Consensus 82 i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~-l~~~~~~-~~~i~~~~~~~~~----------------~~~~~~ 142 (248)
|.++| .+++.+.. .... . ++.+.|+++. +++.+.+ ...+++. ..... ....+.
T Consensus 150 v~viD-~t~~~~~~~i~~~---~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~ 221 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP---T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA 221 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC---c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence 99999 88875533 2221 1 1333444322 2222222 2333333 11111 112334
Q ss_pred CCCCEEEEEcCCCeEEEEECC-c---eeeeecc-----------cCCCceEEEcCCCCEEEEEcC----------CCcEE
Q psy16005 143 HEHGLVAVGGADSKISIVENG-A---KVSSLPI-----------DYEPSSISLDHEHGLVAVGGA----------DSKVH 197 (248)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~-~---~~~~~~~-----------~~~~~~~~~s~~~~~l~~~~~----------d~~v~ 197 (248)
+++..++..+..+.+.+.|.. . ....+.. ......++++|+++.++++.. .+.|.
T Consensus 222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~ 301 (373)
T 2mad_H 222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence 444444444567788888842 1 1222211 111234789999998877653 35799
Q ss_pred EEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEEc-CCCeEEEEECCCCC
Q psy16005 198 IYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVASD-AHRKVVLYRVPDFE 248 (248)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~vw~~~~~~ 248 (248)
++|+.+++.+..+..+ .....++|+|||+ .++++. .++.|.++|+.++|
T Consensus 302 VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 302 SVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999999887666433 3579999999999 777776 58999999998875
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.76 E-value=1.5e-14 Score=108.09 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=161.6
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeee-ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+...+.+++++++|+.+++.. ++.|.+||.. ++..... ..+...+.+++++++++++++...++.|..||.. ++.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~- 89 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII- 89 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-
Confidence 346799999999999888776 7899999987 5543322 2345678999999999988887778899999986 332
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEEC
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVEN 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (248)
....+......+..++++++++.+++... +++..++.. ....+..++++++++++++...++.|..++.
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 22333334567899999999987776543 345555542 1234677888999988888777889999995
Q ss_pred Cceeeeec---ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 163 GAKVSSLP---IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 163 ~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
......+. ....+..++++++|.++++...++.|..||. +++........+...+.+++++++|+.+++...++.|
T Consensus 170 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 248 (299)
T 2z2n_A 170 SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKI 248 (299)
T ss_dssp TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceE
Confidence 33333332 2334678999999997777777889999998 6554322122245678999999999977776677889
Q ss_pred EEEEC
Q psy16005 240 VLYRV 244 (248)
Q Consensus 240 ~vw~~ 244 (248)
..||.
T Consensus 249 ~~~d~ 253 (299)
T 2z2n_A 249 GRLTS 253 (299)
T ss_dssp EEEET
T ss_pred EEECC
Confidence 99986
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.76 E-value=2.2e-15 Score=114.51 Aligned_cols=204 Identities=7% Similarity=-0.010 Sum_probs=146.9
Q ss_pred CcEEEEEecCCCceeeeee------cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEE
Q psy16005 37 GNSVIIRNIENPAISDIYT------EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 110 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 110 (248)
++.|.++|.++++....+. ........+.+. +++.+++...++.|.+||..+++.+.. +. ....+..+++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~--i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR--IT-GFTSPRYIHF 91 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE--EE-CCSSEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE--cC-CCCCCcEEEE
Confidence 6899999999988765442 122346777774 456666667789999999999886533 32 3467899999
Q ss_pred ecCCCEEEEEe--CCcEEEEEccC---------CC------CCceeEeCCCCCEEEEEc-CCCeEEEEE--CCceeeeec
Q psy16005 111 SPDNQRMISIV--ENGAKVSSLPI---------DY------EPSSISLDHEHGLVAVGG-ADSKISIVE--NGAKVSSLP 170 (248)
Q Consensus 111 ~~~~~~l~~~~--~~~~~i~~~~~---------~~------~~~~~~~~~~~~~~~~~~-~~~~i~~~~--~~~~~~~~~ 170 (248)
+++++ ++++. .+.+.+++... .. .+..+++ .++.++++.. .++.|.++| +++....+.
T Consensus 92 ~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 92 LSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp EETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred eCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 99985 44444 45567776532 33 5666777 3444455444 488999999 566677777
Q ss_pred ccCCCceEEEcCCCCEEEEEcCC----------CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 171 IDYEPSSISLDHEHGLVAVGGAD----------SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 171 ~~~~~~~~~~s~~~~~l~~~~~d----------~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
....+..++++|+|++++++..+ +.|.++|..+++.......+....+..++|+|+++.|+++.. .|.
T Consensus 170 ~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~ 247 (328)
T 3dsm_A 170 IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIW 247 (328)
T ss_dssp CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEE
T ss_pred cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEE
Confidence 77778999999999977776554 789999999887654443332346899999999999988765 899
Q ss_pred EEECCCCC
Q psy16005 241 LYRVPDFE 248 (248)
Q Consensus 241 vw~~~~~~ 248 (248)
+||..+++
T Consensus 248 ~~d~~t~~ 255 (328)
T 3dsm_A 248 RMPVEADR 255 (328)
T ss_dssp EEETTCSS
T ss_pred EEECCCCc
Confidence 99998764
No 189
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.75 E-value=4.8e-16 Score=120.85 Aligned_cols=237 Identities=11% Similarity=-0.009 Sum_probs=160.0
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecC-------CcceEEEEECc
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEH-------SCAVNVAKYSP 68 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~-------~~~v~~~~~s~ 68 (248)
+++..++.+. .. .++++|||++++.++ ++.|.++|..+++.+..+.-. ......+.++|
T Consensus 110 ~vv~~I~vG~--~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp 186 (426)
T 3c75_H 110 RILGMTDGGF--LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP 186 (426)
T ss_dssp EEEEEEEECS--SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT
T ss_pred EEEEEEECCC--CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC
Confidence 3455555433 23 799999999888874 468999999999988776421 12345789999
Q ss_pred CCcEEEEEcc--CCeEEEEECCCCceeeeeeccCC-----CCCeeEEEEecCCCEEEEEeCCcEEEE------EccCCCC
Q psy16005 69 SGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPI-----GGPIKDIAWSPDNQRMISIVENGAKVS------SLPIDYE 135 (248)
Q Consensus 69 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~i~------~~~~~~~ 135 (248)
||++++++.. ++.|.+.|+.+++.+......+. .+.-..+.+++||+.++.....+...+ +......
T Consensus 187 DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~ 266 (426)
T 3c75_H 187 DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELL 266 (426)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCB
T ss_pred CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCce
Confidence 9999998864 57899999999886644443211 011122556677776666553332221 1111111
Q ss_pred CceeEeCCCCCEEEEEcCCCeEEEEEC-Cceee---eecc-----------cCCCceEEEcCCCCEEEEEcC--------
Q psy16005 136 PSSISLDHEHGLVAVGGADSKISIVEN-GAKVS---SLPI-----------DYEPSSISLDHEHGLVAVGGA-------- 192 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~---~~~~-----------~~~~~~~~~s~~~~~l~~~~~-------- 192 (248)
...+.+.+++..++.....+.+.+.|. +.... .+.. ......++++|+++.+++...
T Consensus 267 ~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk 346 (426)
T 3c75_H 267 INHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHK 346 (426)
T ss_dssp CSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred eeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccccc
Confidence 123466888888777778899999983 22211 1110 122334899999997777642
Q ss_pred --CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEEc-CCCeEEEEECCCCC
Q psy16005 193 --DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVASD-AHRKVVLYRVPDFE 248 (248)
Q Consensus 193 --d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~vw~~~~~~ 248 (248)
.+.|.++|..+.+.+..+..+. ....+.|+|||+ +++++. .++.|.++|+.+++
T Consensus 347 ~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 347 AASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 3579999999999877665433 578999999999 888887 58999999999875
No 190
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.75 E-value=3.4e-16 Score=131.33 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=147.2
Q ss_pred CcEEEEeCCCCCEEEEeC--C----cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCe-----------
Q psy16005 19 QPIVLGGDPKGKNFLYTN--G----NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK----------- 81 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~--~----~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----------- 81 (248)
.+..++|||||++|+++. + ..|++||+.+++..... .+...+..++|+|| +.|+.++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 577899999999999874 2 37999999998875532 22222357899999 98888776543
Q ss_pred ---EEEEECCCCcee--eeeeccCCCCCeeEEEEecCCCEEEEEeCC------cEEEEEccCCC-C-Ccee---------
Q psy16005 82 ---VRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDNQRMISIVEN------GAKVSSLPIDY-E-PSSI--------- 139 (248)
Q Consensus 82 ---i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------~~~i~~~~~~~-~-~~~~--------- 139 (248)
|++|++.++... .......+...+..+.|+|||++|+..+.+ .+.+|++..+. . ...+
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 899999876532 222333333458899999999998877643 34666664331 1 2111
Q ss_pred EeCCCCCEEEEEcC----CCeEEEEECCc----eeeeecccC-CCceEEEcCCCCEEEEEcCCCcEEEEEcC-CCCCCCc
Q psy16005 140 SLDHEHGLVAVGGA----DSKISIVENGA----KVSSLPIDY-EPSSISLDHEHGLVAVGGADSKVHIYELN-NKSLSPK 209 (248)
Q Consensus 140 ~~~~~~~~~~~~~~----~~~i~~~~~~~----~~~~~~~~~-~~~~~~~s~~~~~l~~~~~d~~v~i~d~~-~~~~~~~ 209 (248)
.+.|+++.++..+. ++.|..|+... ....++... .+..++++ ++.++++...|+..+||.+. +++....
T Consensus 322 ~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~ 400 (741)
T 1yr2_A 322 FVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGA 400 (741)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEE
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceee
Confidence 23467887776654 34588898322 222333322 23456666 55677777888877776554 3333333
Q ss_pred ccccCCcCeEEEEEcCCCcEEEEE----cCCCeEEEEECCCCC
Q psy16005 210 AELDHLGPVTDCSFSPSNEYLVAS----DAHRKVVLYRVPDFE 248 (248)
Q Consensus 210 ~~~~~~~~v~~~~~s~~~~~l~~~----~~d~~i~vw~~~~~~ 248 (248)
+..++.+.+..+.++|+++.|+.. ...+.|++||+.+++
T Consensus 401 l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 401 VSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 332346678999999998866533 335899999998763
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.75 E-value=6.6e-16 Score=118.12 Aligned_cols=236 Identities=10% Similarity=-0.019 Sum_probs=154.8
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecCC-------cceEEEEECc
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEHS-------CAVNVAKYSP 68 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~~-------~~v~~~~~s~ 68 (248)
+++..++.+.. .. ++++|||++++.++ ++.|.+||..+++....+.-.. .....+.|+|
T Consensus 70 ~v~~~I~vG~~--P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 70 RVIGMIDGGFL--PN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp EEEEEEEECSS--CE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred eEEEEEECCCC--Cc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 34455554332 24 99999999888764 4679999999999888775321 2355789999
Q ss_pred CCcEEEEEcc--CCeEEEEECCCCceeeeeeccCCC-----CCeeEEEEecCCCEEEEEeCC-cEEEEEccC----C-CC
Q psy16005 69 SGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPIG-----GPIKDIAWSPDNQRMISIVEN-GAKVSSLPI----D-YE 135 (248)
Q Consensus 69 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~----~-~~ 135 (248)
||++++++.. ++.|.++|+.+++.+......+.. +.-.-++.++||+.++..... +..+-.... . ..
T Consensus 147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~ 226 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF 226 (386)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccc
Confidence 9999988764 689999999999866444432210 011123667777776666543 221110000 0 00
Q ss_pred C-ceeEeC-CCCCEEEEEcCCCeEEEEECC-c---eeeeec-----------ccCCCceEEEcCCCCEEEEEcC------
Q psy16005 136 P-SSISLD-HEHGLVAVGGADSKISIVENG-A---KVSSLP-----------IDYEPSSISLDHEHGLVAVGGA------ 192 (248)
Q Consensus 136 ~-~~~~~~-~~~~~~~~~~~~~~i~~~~~~-~---~~~~~~-----------~~~~~~~~~~s~~~~~l~~~~~------ 192 (248)
+ ....|. ++|++++ .+.++.+++.|.. . ....+. .......++++|+++.+++...
T Consensus 227 ~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 227 LINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp BCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred ccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence 1 113443 5665555 5558999999942 2 222221 0223456888999998887643
Q ss_pred ----CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEE-cCCCeEEEEECCCCC
Q psy16005 193 ----DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVAS-DAHRKVVLYRVPDFE 248 (248)
Q Consensus 193 ----d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~d~~i~vw~~~~~~ 248 (248)
.+.|.++|+++++.+..+..++ .+..++++||++ +|+++ ..++.|.++|..+++
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred cCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 2579999999999887776554 688999999997 66665 558999999999875
No 192
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=4.6e-15 Score=110.46 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=137.0
Q ss_pred ccCCcEEEEe-CCCCCEEEEeC--CcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 16 QRGQPIVLGG-DPKGKNFLYTN--GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 16 ~~~~v~~~~~-s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
+...+..+++ .++++++++.. ++.|++|+ .+++....+. .+...+.+++++|+++++++...++.|.+||.. ++
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence 3456889999 67887777764 78999999 5666666553 334568999999999988888888999999965 44
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEccC--------C---CCCceeEeCCCCCEEEEEcCCC-eEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIV-ENGAKVSSLPI--------D---YEPSSISLDHEHGLVAVGGADS-KIS 158 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~~i~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~-~i~ 158 (248)
.........+...+..++++++|+.+++.. .+.+.+|+... . ..+..++++++++++++...++ .|.
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~ 232 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLT 232 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEE
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEE
Confidence 332222223445789999999998666654 44567777532 1 3567899999999988888776 999
Q ss_pred EEE-CCceeeeecccC---CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 159 IVE-NGAKVSSLPIDY---EPSSISLDHEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 159 ~~~-~~~~~~~~~~~~---~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
+|+ .++.+..+.... .+..++++|+|+++++ +.++.|++|+.....
T Consensus 233 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 233 IFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 999 555555554332 3568999999986666 568999999986543
No 193
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=1.4e-15 Score=115.71 Aligned_cols=189 Identities=11% Similarity=0.105 Sum_probs=137.2
Q ss_pred CcceEEEEECcCCcEEEEEccC------------------------CeEEEEECCCCceeeeeeccCCCCCeeEEEEecC
Q psy16005 58 SCAVNVAKYSPSGFYIASGDIS------------------------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 113 (248)
-+.+.+++++|+|+++++...+ +.|.+||..+++... ..-..+-..+..++++|+
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ-SSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE-EECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe-ccCCCccCCceEEEECCC
Confidence 3568999999999998888777 479999998887542 112234457899999999
Q ss_pred CCEEEEEeCC-cEEEEEccCC--------------------CCCceeEeCC-CCCEEEEEc-CCCeEEEEE-CCceeeee
Q psy16005 114 NQRMISIVEN-GAKVSSLPID--------------------YEPSSISLDH-EHGLVAVGG-ADSKISIVE-NGAKVSSL 169 (248)
Q Consensus 114 ~~~l~~~~~~-~~~i~~~~~~--------------------~~~~~~~~~~-~~~~~~~~~-~~~~i~~~~-~~~~~~~~ 169 (248)
|+.+++...+ .+.+|+.... ..+..++++| ++.++++.+ .++.|+.|+ .++.+..+
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~ 181 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQW 181 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEe
Confidence 9966666544 4577775422 1366899999 788888886 689999999 56666555
Q ss_pred ccc-----------CCCceEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEE----
Q psy16005 170 PID-----------YEPSSISLDHE-HGLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVA---- 232 (248)
Q Consensus 170 ~~~-----------~~~~~~~~s~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~---- 232 (248)
... ..+..++++|+ +.++++...++.|++||..+++.+..+.. .+...+..++|+| +..+++
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 321 23789999998 77777777889999999997776544432 3566788999999 333333
Q ss_pred ---EcCCCeEEEEECCCCC
Q psy16005 233 ---SDAHRKVVLYRVPDFE 248 (248)
Q Consensus 233 ---~~~d~~i~vw~~~~~~ 248 (248)
...+..|++|++.+++
T Consensus 261 ~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp CTTCSCCCCEEEEETTTCC
T ss_pred EeccCCCcEEEEEEcCCCe
Confidence 2345689999987764
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=3.7e-15 Score=111.58 Aligned_cols=189 Identities=10% Similarity=0.041 Sum_probs=135.5
Q ss_pred eeeeeecCCcceEEEEECcCCc-EEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEE
Q psy16005 50 ISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKV 127 (248)
Q Consensus 50 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i 127 (248)
....+..+.....+++|+|+++ +++++..++.|..||..++ . ..+..+...+.+++++++|+.+++... .++.+
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~--~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L--SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E--EEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e--EEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 3344545566678999999998 7788888999999999876 2 233345677999999999997776654 45677
Q ss_pred EEccCC--------------CCCceeEeCCCCCEEEEE----c-------------CCCeEEEEECC-ceeeeecccCCC
Q psy16005 128 SSLPID--------------YEPSSISLDHEHGLVAVG----G-------------ADSKISIVENG-AKVSSLPIDYEP 175 (248)
Q Consensus 128 ~~~~~~--------------~~~~~~~~~~~~~~~~~~----~-------------~~~~i~~~~~~-~~~~~~~~~~~~ 175 (248)
|+.... ..+..++++|+|+++++. . ..+.|..++.. +..........+
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~ 174 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKP 174 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSE
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCC
Confidence 776321 234578999999988873 2 13567777743 333333344456
Q ss_pred ceEEEcCCCCEEEEEcCCCcEEEEEcC-CCCC---CCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 176 SSISLDHEHGLVAVGGADSKVHIYELN-NKSL---SPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 176 ~~~~~s~~~~~l~~~~~d~~v~i~d~~-~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
..++|+|+++.+++.+.++.|++|++. +++. ...+ ..+...+..++++++|+++++. ++.|.+|+.+
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 889999999988777788999999997 4433 1222 2345567889999999876666 7889999875
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.73 E-value=7.3e-14 Score=104.32 Aligned_cols=225 Identities=13% Similarity=0.067 Sum_probs=155.3
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee-eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD-IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
...+.+++++++|+++++.. ++.|..|+.. ++... .+......+.+++++++++++++...++.|..||. +++..
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~- 132 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR- 132 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-
Confidence 35788999999999888776 7889999976 43322 12224457899999999998888777889999998 55432
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECC
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVENG 163 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (248)
..........+..++++++|+..++... +++..++.. ....+..++++++++++++...++.|..|+..
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 212 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS 212 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC
Confidence 2333334567899999999977666543 345555431 12235678889999988877778899999953
Q ss_pred ceeeeecc---cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 164 AKVSSLPI---DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 164 ~~~~~~~~---~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
.....+.. ...+..++++++|+++++...++.|..||. +++........+...+.++++ ++++.+++.. .+.+.
T Consensus 213 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 213 GEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred CcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 33333322 245788999999987776667789999998 343221112234567899999 8888777665 56777
Q ss_pred EEECCCC
Q psy16005 241 LYRVPDF 247 (248)
Q Consensus 241 vw~~~~~ 247 (248)
.++.++.
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7777654
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=4.1e-15 Score=124.23 Aligned_cols=217 Identities=13% Similarity=0.096 Sum_probs=144.1
Q ss_pred CCCCEEEEeC--C----cEEEEEecCCCceeeee------ecCCcceEEEEECcCCcEEEEEccCC-----eEEEEECCC
Q psy16005 27 PKGKNFLYTN--G----NSVIIRNIENPAISDIY------TEHSCAVNVAKYSPSGFYIASGDISG-----KVRIWDTVN 89 (248)
Q Consensus 27 ~~~~~l~~~~--~----~~v~v~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~ 89 (248)
|+|++++... . +.+++.+...++....+ .+|...+..++|||||++||.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8999888763 1 25566665555443222 13444688999999999998765543 899999999
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-----------------EEEEEccCCC--------------CCce
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-----------------AKVSSLPIDY--------------EPSS 138 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----------------~~i~~~~~~~--------------~~~~ 138 (248)
++.... .+.. ..+..++|+|||+.|+.++.++ +.+|++.... ....
T Consensus 161 g~~~~~-~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPD-VLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEE-EEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCcc-cccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 875432 2221 2367799999999999887542 5667764321 1236
Q ss_pred eEeCCCCCEEEEEcC-----CCeEEEEEC--------Cc-eeeeecccCCCceEEEcCCCCEEEEEcCC----CcEEEEE
Q psy16005 139 ISLDHEHGLVAVGGA-----DSKISIVEN--------GA-KVSSLPIDYEPSSISLDHEHGLVAVGGAD----SKVHIYE 200 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~-----~~~i~~~~~--------~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----~~v~i~d 200 (248)
+.++|++++++..+. +..|++||. +. ....+..........|+|+|+.|+..+.. +.|.+||
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d 317 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINID 317 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEe
Confidence 789999998887654 568999993 22 34444433333334689999987776543 3699999
Q ss_pred cCCCCC--CCcccccCCc--CeEEEEEcCCCcEEEEEcCCCe--EEEEECCCC
Q psy16005 201 LNNKSL--SPKAELDHLG--PVTDCSFSPSNEYLVASDAHRK--VVLYRVPDF 247 (248)
Q Consensus 201 ~~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~--i~vw~~~~~ 247 (248)
+.++.. ...+. .|.. .+..++|++++.++++...++. |.+|++.++
T Consensus 318 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 318 FTDPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp TTSCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred CCCCCcccceecc-CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence 987642 12222 3433 6888999988888888888874 566676554
No 197
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.72 E-value=2.3e-14 Score=111.91 Aligned_cols=227 Identities=10% Similarity=0.080 Sum_probs=155.4
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCC--eEEEEECCCCcee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHI 93 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~ 93 (248)
...+..++|+|+|+++++.. ++.|++||..++........... .. ++|+|+++.|+++..++ .|.+++...+...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 45788999999999666665 68999999988776655544333 33 99999999998888766 7888988765432
Q ss_pred eee-ec-cCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC---------------CCCc-eeEeCCC-CCEEEEEcC
Q psy16005 94 LKN-EF-HPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID---------------YEPS-SISLDHE-HGLVAVGGA 153 (248)
Q Consensus 94 ~~~-~~-~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~---------------~~~~-~~~~~~~-~~~~~~~~~ 153 (248)
... .+ ......+.+++++|++..|+++..++ +..|+.... ..+. .++++|+ +.++++...
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 111 11 21346678899999555555555444 455654311 1134 8999994 667777778
Q ss_pred CCeEEEEECCceeeeecc----------------cCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccc----
Q psy16005 154 DSKISIVENGAKVSSLPI----------------DYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAEL---- 212 (248)
Q Consensus 154 ~~~i~~~~~~~~~~~~~~----------------~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~---- 212 (248)
++.|+.|+.......+.. -..+..++++|+|+++++-. .++.|+.|++.+++.......
T Consensus 288 ~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~ 367 (409)
T 3hrp_A 288 LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVA 367 (409)
T ss_dssp TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCB
T ss_pred CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCC
Confidence 889999983322322211 12378899999999777777 788999999776653211110
Q ss_pred ---------cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 213 ---------DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 213 ---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
..-.....++++|+|.++++-..++.|+.++++
T Consensus 368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 012458999999998888888888899988763
No 198
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=2e-14 Score=116.28 Aligned_cols=227 Identities=14% Similarity=0.113 Sum_probs=155.1
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecC--CCceeeeeecCCcceEEEEEC----cCCcEEEEEcc-CCeEEEEECCCC
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIE--NPAISDIYTEHSCAVNVAKYS----PSGFYIASGDI-SGKVRIWDTVNK 90 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~--~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~-dg~i~iwd~~~~ 90 (248)
.+..+.|+|||+++++++ ++.|.+||+. +++.+..+.... ....++|+ |||+++++++. +++|.++|..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 466899999999988876 8899999995 777777776533 46789999 69998887765 589999999888
Q ss_pred ceeeeeeccC--------C-CCCeeEEEEecCCCEEEEEeCCc--EEEEEcc-----------CCCCCceeEeCCCCCEE
Q psy16005 91 EHILKNEFHP--------I-GGPIKDIAWSPDNQRMISIVENG--AKVSSLP-----------IDYEPSSISLDHEHGLV 148 (248)
Q Consensus 91 ~~~~~~~~~~--------~-~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~-----------~~~~~~~~~~~~~~~~~ 148 (248)
+.+......+ | ...+..+..++++..++....+. +.+.++. ....+..+.|+|+++++
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence 7654433321 1 12577888888877766665443 2334432 23345577899999987
Q ss_pred EEEc-CCCeEEEEE--CCceeeeecc-cCCC---ceEE-EcCCCC-EEEEEc-CCCcEEEEEcCCC-------CCCCccc
Q psy16005 149 AVGG-ADSKISIVE--NGAKVSSLPI-DYEP---SSIS-LDHEHG-LVAVGG-ADSKVHIYELNNK-------SLSPKAE 211 (248)
Q Consensus 149 ~~~~-~~~~i~~~~--~~~~~~~~~~-~~~~---~~~~-~s~~~~-~l~~~~-~d~~v~i~d~~~~-------~~~~~~~ 211 (248)
+++. .++.|.++| +++.+..++. ...+ .... ++|++. .++++. .++.|.++|..+. +.+....
T Consensus 357 ~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP 436 (567)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe
Confidence 6654 678999999 5555555554 2222 2333 578755 444443 4689999999873 2322222
Q ss_pred ccCCcCeEEEEEcCCCcEEEEEcC-------CCeEEEEECCCC
Q psy16005 212 LDHLGPVTDCSFSPSNEYLVASDA-------HRKVVLYRVPDF 247 (248)
Q Consensus 212 ~~~~~~v~~~~~s~~~~~l~~~~~-------d~~i~vw~~~~~ 247 (248)
.....-..+..+|+++++.+... .+.|.++|+.+.
T Consensus 437 -~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 437 -ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp -CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred -cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 12222244778999999988653 359999998765
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.71 E-value=2.3e-13 Score=101.68 Aligned_cols=224 Identities=11% Similarity=0.056 Sum_probs=159.0
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee-eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
...+.++++.++|+.+++.. ++.|.+|+.. ++.... +......+.+++++++++++++...++.|..+|.. ++. .
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~ 95 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-T 95 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-E
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-E
Confidence 45788999999999888775 7899999987 554432 22234678999999999988877778899999987 543 2
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECC
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVENG 163 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (248)
..........+..++++++++.+++... +++..++.. ....+..++++++++++++...++.|..++..
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 175 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT 175 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 2333334467899999999987776653 344444432 12346778889999977777778889999843
Q ss_pred ceeeeecc---cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 164 AKVSSLPI---DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 164 ~~~~~~~~---~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
.....+.. ...+..++++++|.+.++....+.|..||. +++........+...+.+++++++|+.+++...++.|.
T Consensus 176 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 254 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIG 254 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEE
T ss_pred CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEE
Confidence 33333322 234688999999987777777778999998 44432221223456689999999999777766678898
Q ss_pred EEEC
Q psy16005 241 LYRV 244 (248)
Q Consensus 241 vw~~ 244 (248)
.|+.
T Consensus 255 ~~~~ 258 (300)
T 2qc5_A 255 RITN 258 (300)
T ss_dssp EECT
T ss_pred EECC
Confidence 8886
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.71 E-value=2.7e-15 Score=111.11 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=135.0
Q ss_pred CCcEEEEEccCCeEEEEECCCCceeeeeeccCCC-CCeeEEEEecCCCEEEEEeC-------CcEEEEEccCC--CCCce
Q psy16005 69 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG-GPIKDIAWSPDNQRMISIVE-------NGAKVSSLPID--YEPSS 138 (248)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-------~~~~i~~~~~~--~~~~~ 138 (248)
.+++|++++.++.|.+||.++++.+.... .+. ..+.++.++|+|+.+++... ++..+|.+..+ ..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--LEKGWECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE--CCTTCCCCEEEECTTSCEEEECBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC--CCccCCCcCeEECCCCCEEEeCCCCEEEECCCCCEEEEEcCCCCccccc
Confidence 35889999999999999999999765444 333 46889999999998884321 24456777654 34567
Q ss_pred eEeCCCCCEEEEEcC-CCeEEEEE-CCceeeeeccc-------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc
Q psy16005 139 ISLDHEHGLVAVGGA-DSKISIVE-NGAKVSSLPID-------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK 209 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~-~~~i~~~~-~~~~~~~~~~~-------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 209 (248)
..+.++++++++.+. ++.+..++ .++.+..+... ..+..++..++|.++++...++.|..||.+ ++.+..
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~ 160 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS 160 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence 788999999998877 78888888 67776666432 234567889999999999999999999998 777555
Q ss_pred ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 210 AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 210 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.. ....+.++.+.++|+.++++..++.|..+|..+|+
T Consensus 161 ~~--~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 161 VK--LSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp EE--CSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred EE--CCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 43 23456778889999999998888899999988775
No 201
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=2.9e-14 Score=115.39 Aligned_cols=215 Identities=16% Similarity=0.134 Sum_probs=147.1
Q ss_pred CCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC--CCceeeeeeccCCCC
Q psy16005 27 PKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV--NKEHILKNEFHPIGG 103 (248)
Q Consensus 27 ~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~ 103 (248)
|.+.++++.. ++.|.++|..+++.+..+.. ...+..+.|+|||+++++++.++.|.+||+. +++.+ ..+.. ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~~-G~ 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKI-GS 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEEC-CS
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe--EEEec-CC
Confidence 3333444444 89999999999998888754 3456799999999999999999999999996 65544 33332 34
Q ss_pred CeeEEEEe----cCCCEEEEEeC--CcEEEEEccCCC---------------------CCceeEeCCCCCE-EEEEcCCC
Q psy16005 104 PIKDIAWS----PDNQRMISIVE--NGAKVSSLPIDY---------------------EPSSISLDHEHGL-VAVGGADS 155 (248)
Q Consensus 104 ~v~~~~~~----~~~~~l~~~~~--~~~~i~~~~~~~---------------------~~~~~~~~~~~~~-~~~~~~~~ 155 (248)
....++|+ |||++++++.. +.+.+++..... .+..+..++++.. ++....+|
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 56899999 69999988874 345666643211 2234555666554 44455678
Q ss_pred eEEEEECCc----eeeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccc----cCCcCeEEEEEcCC
Q psy16005 156 KISIVENGA----KVSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAEL----DHLGPVTDCSFSPS 226 (248)
Q Consensus 156 ~i~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~----~~~~~v~~~~~s~~ 226 (248)
.|.++|... .+..+.....+..+.|+|+|+++++++ .++.|.++|+.+++....... .|.+.-..+ ++|+
T Consensus 321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~ 399 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPT 399 (567)
T ss_dssp EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETT
T ss_pred eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCC
Confidence 999998332 233344445567889999999887765 578899999999886544433 343322222 5887
Q ss_pred Cc-EEEEEc-CCCeEEEEECCC
Q psy16005 227 NE-YLVASD-AHRKVVLYRVPD 246 (248)
Q Consensus 227 ~~-~l~~~~-~d~~i~vw~~~~ 246 (248)
+. .+++.. .++.|.++|..+
T Consensus 400 ~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 400 FGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TEEEEEEEBSSSSEEEEEECCT
T ss_pred CCcEEEeCCCCCCeEEEecCCC
Confidence 54 444543 468999999876
No 202
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.70 E-value=3.4e-15 Score=124.44 Aligned_cols=216 Identities=9% Similarity=0.015 Sum_probs=139.3
Q ss_pred CCCCCEEEEeC--C----cEEEEEecCCCceeeeee------cCCcceEEEEECcCCcEEEE-----EccCCeEEEEECC
Q psy16005 26 DPKGKNFLYTN--G----NSVIIRNIENPAISDIYT------EHSCAVNVAKYSPSGFYIAS-----GDISGKVRIWDTV 88 (248)
Q Consensus 26 s~~~~~l~~~~--~----~~v~v~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~-----~~~dg~i~iwd~~ 88 (248)
+|+|++++... . ..+++.+...++....+. +|...+.+++|||||++||. |+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47899888764 2 345555655554433332 34457899999999999983 4445689999999
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc--------------EEEEEccCCC--------------CCceeE
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG--------------AKVSSLPIDY--------------EPSSIS 140 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------------~~i~~~~~~~--------------~~~~~~ 140 (248)
+++.+....+.. .....++|+|||+.|+.++.+. +.+|++.... ....+.
T Consensus 156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 987531112221 1126789999999999887643 6777765321 234678
Q ss_pred eCCCCCEEEEEcCCC----eEEEEEC-Cceeeee-cccCCCceEEEcCCCCEEEEEc---CCCcEEEEEcCCCCC--CCc
Q psy16005 141 LDHEHGLVAVGGADS----KISIVEN-GAKVSSL-PIDYEPSSISLDHEHGLVAVGG---ADSKVHIYELNNKSL--SPK 209 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~----~i~~~~~-~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~---~d~~v~i~d~~~~~~--~~~ 209 (248)
++|+|++++..+.++ .|++++. +.....+ ..........+ ++|.+++.+. .++.|.+||+.+++. ...
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 312 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKE 312 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEE
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeE
Confidence 999999888777655 6777763 2223333 23334445555 6666444443 257899999987653 122
Q ss_pred ccccC-CcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 210 AELDH-LGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 210 ~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+...+ ...+..++|+ ++.++++...|+..++|.++
T Consensus 313 l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 313 IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 22222 4568889998 67788888889888887653
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.69 E-value=8.1e-14 Score=104.38 Aligned_cols=212 Identities=12% Similarity=0.102 Sum_probs=145.8
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
.-..+..|+|++..|+... ++.|+.||..+++.. .+ .....+.+++++|+++++++ . ++.|.+||.++++....
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 3455889999766655553 789999998877653 33 34567999999999995554 3 56899999987764322
Q ss_pred eeccC--CCCCeeEEEEecCCCEEEEEeC----------CcEEEEEccCC----------CCCceeEeCCCCCEE-EEEc
Q psy16005 96 NEFHP--IGGPIKDIAWSPDNQRMISIVE----------NGAKVSSLPID----------YEPSSISLDHEHGLV-AVGG 152 (248)
Q Consensus 96 ~~~~~--~~~~v~~~~~~~~~~~l~~~~~----------~~~~i~~~~~~----------~~~~~~~~~~~~~~~-~~~~ 152 (248)
..... ....+..++++|+|+.+++... ....+|.+... ..+..++++|+++.+ ++.+
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~ 168 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDS 168 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEG
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecC
Confidence 22211 1235788999999997665532 22466766533 234678999999865 5556
Q ss_pred CCCeEEEEEC----Cce-----eeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEE
Q psy16005 153 ADSKISIVEN----GAK-----VSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCS 222 (248)
Q Consensus 153 ~~~~i~~~~~----~~~-----~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~ 222 (248)
.++.|..|+. +.. ...+. ....+..++++++|++.++....+.|..||..+++...... .+...+++++
T Consensus 169 ~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-~p~~~~t~~~ 247 (297)
T 3g4e_A 169 LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-LPVDKTTSCC 247 (297)
T ss_dssp GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE-CSSSBEEEEE
T ss_pred CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE-CCCCCceEEE
Confidence 6788999872 221 11111 22456889999999877777777889999999888765554 3446789999
Q ss_pred Ec-CCCcEEEEEc
Q psy16005 223 FS-PSNEYLVASD 234 (248)
Q Consensus 223 ~s-~~~~~l~~~~ 234 (248)
|. |+++.|+.++
T Consensus 248 f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 248 FGGKNYSEMYVTC 260 (297)
T ss_dssp EESGGGCEEEEEE
T ss_pred EeCCCCCEEEEEc
Confidence 98 8887765543
No 204
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.68 E-value=9.5e-15 Score=121.62 Aligned_cols=230 Identities=10% Similarity=0.061 Sum_probs=146.9
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCC-------
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG------- 80 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------- 80 (248)
..+...+..++|||||++|+.+. ...|+++|+.+++..... .+......++|+ |++.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 34455688889999999999752 148999999999865431 111113578899 999998887764
Q ss_pred ------eEEEEECCCCce--eeeeeccC-CCCCeeEEEEecCCCEEEEEeCC-----cEEEEEccCCC-CCcee------
Q psy16005 81 ------KVRIWDTVNKEH--ILKNEFHP-IGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLPIDY-EPSSI------ 139 (248)
Q Consensus 81 ------~i~iwd~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~~~~-~~~~~------ 139 (248)
.|++|++.++.. ........ +......+.|+|||++|+..... .+.++++..+. ....+
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 499999987653 22233333 44557889999999988765432 34555654332 12211
Q ss_pred ---EeCCCCCEEEE-EcCC---CeEEEEECC--ce---eeeecccCCCceEEEcCCCCEEEEEcCCC---cEEEEEcCCC
Q psy16005 140 ---SLDHEHGLVAV-GGAD---SKISIVENG--AK---VSSLPIDYEPSSISLDHEHGLVAVGGADS---KVHIYELNNK 204 (248)
Q Consensus 140 ---~~~~~~~~~~~-~~~~---~~i~~~~~~--~~---~~~~~~~~~~~~~~~s~~~~~l~~~~~d~---~v~i~d~~~~ 204 (248)
.+++++..++. ...+ +.|..++.. .. ....+....+. .|+++++.|+....++ .|++||+.++
T Consensus 283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 24555555443 3333 578888832 22 22233333333 8999999887766543 6899998755
Q ss_pred CCCCcccccCCcCeEEEEEcCCCcEEEEEcCC----CeEEEEECCCCC
Q psy16005 205 SLSPKAELDHLGPVTDCSFSPSNEYLVASDAH----RKVVLYRVPDFE 248 (248)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~vw~~~~~~ 248 (248)
.. ..+..+..+.+..+.++|+++.++....+ +.+..||+.+++
T Consensus 361 ~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 RV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 43 23333455667888889998877655433 789999987764
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.68 E-value=4e-15 Score=114.23 Aligned_cols=174 Identities=10% Similarity=0.077 Sum_probs=125.6
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc---------eee-eeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA---------ISD-IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~---------~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
.++..+++++...++++|+...+.+|++...+ ... ....+.. |+.++| |+++|+++ .++.|++||+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 36899999999999999986788889876433 111 2234666 999999 89999998 8899999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceee
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVS 167 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (248)
.+.... .....|...+.++.+.+. .++++..||.+.+||......
T Consensus 114 ~sl~~~--~~~~~~~~~v~~i~~~~p---------------------------------~~av~~~dG~L~v~dl~~~~~ 158 (388)
T 1xip_A 114 EELSEF--RTVTSFEKPVFQLKNVNN---------------------------------TLVILNSVNDLSALDLRTKST 158 (388)
T ss_dssp SSTTCE--EEEEECSSCEEEEEECSS---------------------------------EEEEEETTSEEEEEETTTCCE
T ss_pred hhhhcc--CccceeecceeeEEecCC---------------------------------CEEEEECCCCEEEEEccCCcc
Confidence 876532 233445555655544331 156677888888888332111
Q ss_pred eecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC--CCcc------c--ccCCcCeEEEEEcCCCcEEEEE
Q psy16005 168 SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL--SPKA------E--LDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 168 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~------~--~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
..+...+.+++|||+| ++.|..||.+++|+...++. ...+ . .+|...|.++.|.++++++++-
T Consensus 159 -~~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 159 -KQLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp -EEEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred -ccccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 1245678999999999 67889999999999887663 2222 1 1367889999999999988763
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.66 E-value=1e-12 Score=98.17 Aligned_cols=223 Identities=10% Similarity=0.030 Sum_probs=153.6
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee-eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
...+.+++++++|+++++.. ++.|..+|.. ++.... +......+.++++.++++++++...++.|..+|.. ++..
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~- 137 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY- 137 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-
Confidence 35788999999999877766 7889999977 554322 22234678999999999988887778899999987 5432
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECC
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVENG 163 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (248)
...+......+..++++++++..++... +++..++.. ....+..++++++++++++....+.|..++..
T Consensus 138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 2333334567899999999985555442 334555432 11245678889999888877778889999953
Q ss_pred ceeeeec---ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 164 AKVSSLP---IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 164 ~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
.....+. ....+.+++++++|++.++...++.|..||. +++............+.+++++++|+.+++.. . .|.
T Consensus 218 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~ 294 (300)
T 2qc5_A 218 GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIG 294 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEE
T ss_pred CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceE
Confidence 3333232 2345788999999987777666789999998 34332111212345688999999998666555 4 777
Q ss_pred EEECC
Q psy16005 241 LYRVP 245 (248)
Q Consensus 241 vw~~~ 245 (248)
.++.+
T Consensus 295 ~~~p~ 299 (300)
T 2qc5_A 295 KLNLN 299 (300)
T ss_dssp EEEEC
T ss_pred EeCCC
Confidence 77654
No 207
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=2.6e-13 Score=99.96 Aligned_cols=187 Identities=11% Similarity=0.044 Sum_probs=133.7
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
..+.+++++++|+++++..++.|.+||................+.+++++|+++++++...++.|.+|+..+.... ..
T Consensus 67 ~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~--~~ 144 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT--VL 144 (270)
T ss_dssp CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE--EC
T ss_pred CCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE--ee
Confidence 4677899999999666656889999997765443222223356899999999998887777899999976554422 11
Q ss_pred ccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEEC-Cce
Q psy16005 98 FHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVEN-GAK 165 (248)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 165 (248)
.......+.+++++++|+.+++... +.+.+|+.... ..+..+++++++.++++...++.|..|+. +..
T Consensus 145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 2222346788999999986555543 45666665321 34678899999988888888899999993 333
Q ss_pred eeeecc--cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 166 VSSLPI--DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 166 ~~~~~~--~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
...... ...+..++++|+|+++++...++.|++|++...+.
T Consensus 225 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 225 STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred ceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 333222 24578999999999888888899999999876554
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.62 E-value=3.7e-13 Score=102.86 Aligned_cols=218 Identities=13% Similarity=0.101 Sum_probs=142.4
Q ss_pred CCcEEEEeCCCCCEEEEeC---CcEEEEEecCCCceeeee-------ecCCcceEEEEECcCCcEEEEEcc-----CCeE
Q psy16005 18 GQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIY-------TEHSCAVNVAKYSPSGFYIASGDI-----SGKV 82 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~---~~~v~v~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i 82 (248)
..+..++++|+|+.+++.. ++.+.||.+.+++.. .+ ..+-..+.+++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5788999999999988853 342555555455433 12 134467899999999886666543 5789
Q ss_pred EEEECCCCceeeeeecc----CCCCCeeEEEEecCCCEEEEEe-----CCcEEEEEccCC--------------------
Q psy16005 83 RIWDTVNKEHILKNEFH----PIGGPIKDIAWSPDNQRMISIV-----ENGAKVSSLPID-------------------- 133 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-----~~~~~i~~~~~~-------------------- 133 (248)
.+||+.+++.+....+. .+...+..+++++++..++.+. ..++.+|++...
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999988754434432 1234568999998765555543 234566765311
Q ss_pred -------------------CCCceeEeCCCCCEEEEEcCCC-eEEEEECCc----e---------eeeecccCCCceEEE
Q psy16005 134 -------------------YEPSSISLDHEHGLVAVGGADS-KISIVENGA----K---------VSSLPIDYEPSSISL 180 (248)
Q Consensus 134 -------------------~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~----~---------~~~~~~~~~~~~~~~ 180 (248)
..+..++++|+++.++++...+ .+..++... . +........+..+++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 1135688899998777766554 666665210 0 011112235678999
Q ss_pred cCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 181 DHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 181 s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
+++|.++++...++.|.+||..+++........+...+.+++|.++++++++.+..
T Consensus 256 d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred CCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 99999988888899999999855553222221224568999999999888777643
No 209
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.62 E-value=3.4e-13 Score=103.22 Aligned_cols=205 Identities=10% Similarity=-0.043 Sum_probs=133.2
Q ss_pred EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------cCCeEEEEECCCCceeeeeeccCC-----CC
Q psy16005 39 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVNKEHILKNEFHPI-----GG 103 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~-----~~ 103 (248)
.|.++|..+++.+..+.....+ .+.++||+++++++. .++.|.+||+.+++.+....+.+. ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8899999999999988755556 799999999998886 368899999999987654444311 13
Q ss_pred CeeEEEEecCCCEEEEEeCC---cEEE--EEccC------CCC--------CceeEeCCCCCE-----------------
Q psy16005 104 PIKDIAWSPDNQRMISIVEN---GAKV--SSLPI------DYE--------PSSISLDHEHGL----------------- 147 (248)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~~---~~~i--~~~~~------~~~--------~~~~~~~~~~~~----------------- 147 (248)
....++++|||++++++... .+.+ +|... ... ..-+..++++++
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~ 204 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE
Confidence 46789999999999998742 3455 55422 100 000111122221
Q ss_pred --------------------EEEEcCCCeEEEEECCc----eeeeecc-----------cCCCceEEEcCCCCEEEEEcC
Q psy16005 148 --------------------VAVGGADSKISIVENGA----KVSSLPI-----------DYEPSSISLDHEHGLVAVGGA 192 (248)
Q Consensus 148 --------------------~~~~~~~~~i~~~~~~~----~~~~~~~-----------~~~~~~~~~s~~~~~l~~~~~ 192 (248)
++..+. +.+.+.|... .+..+.. ......++++|+++.++++..
T Consensus 205 ~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~ 283 (368)
T 1mda_H 205 QCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV 283 (368)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred EeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEec
Confidence 122222 4455555211 1111111 111223789999998887643
Q ss_pred ---------CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE-EEEEc-CCCeEEEEECCCCC
Q psy16005 193 ---------DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY-LVASD-AHRKVVLYRVPDFE 248 (248)
Q Consensus 193 ---------d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~d~~i~vw~~~~~~ 248 (248)
++.+.++|+.+.+.+..+..+. ....++|+|||++ +++.. .++.|.++|+.++|
T Consensus 284 ~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 284 EHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp ECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred cccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 2356799999998876665443 5899999999985 55555 58999999998874
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.61 E-value=4.6e-13 Score=100.66 Aligned_cols=213 Identities=12% Similarity=0.114 Sum_probs=138.4
Q ss_pred CCcEEEEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 18 GQPIVLGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
.......|+|+|+.|+.. . ++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.. ++....
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 446688999999955444 3 789999987 454 34455566778999999999977766667889999986 442211
Q ss_pred e-eccC-CCCCeeEEEEecCCCEEEE----EeC------------CcEEEEEccCC----------CCCceeEeCCCCCE
Q psy16005 96 N-EFHP-IGGPIKDIAWSPDNQRMIS----IVE------------NGAKVSSLPID----------YEPSSISLDHEHGL 147 (248)
Q Consensus 96 ~-~~~~-~~~~v~~~~~~~~~~~l~~----~~~------------~~~~i~~~~~~----------~~~~~~~~~~~~~~ 147 (248)
. ...+ ....+..++++++|+..++ +.. ....+|.++.. ..+..++++|+++.
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~ 201 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQT 201 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSE
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCE
Confidence 1 1111 1234678999999997775 221 12344444321 23456889999997
Q ss_pred EEEEcCC------CeEEEEEC-Cceee---ee-c-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCC
Q psy16005 148 VAVGGAD------SKISIVEN-GAKVS---SL-P-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 215 (248)
Q Consensus 148 ~~~~~~~------~~i~~~~~-~~~~~---~~-~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 215 (248)
++++... +.|..|+. ...+. .+ . ....+..++++++|++ .+++.++ |.+|+.. ++....... +
T Consensus 202 lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~~-g~~~~~~~~-~- 276 (305)
T 3dr2_A 202 LYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGTG-VCVFDSD-GQLLGHIPT-P- 276 (305)
T ss_dssp EEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSSE-EEEECTT-SCEEEEEEC-S-
T ss_pred EEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCCc-EEEECCC-CCEEEEEEC-C-
Confidence 7766554 68888882 11111 11 1 2344678999999994 4444454 9999984 444333332 2
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
..+.+++|+|+++.|+.++.++.
T Consensus 277 ~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 277 GTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp SCCCEEEECTTSCEEEEEETTEE
T ss_pred CceeEEEEeCCCCEEEEEcCCeE
Confidence 25889999999988887776543
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.61 E-value=3.3e-12 Score=96.85 Aligned_cols=209 Identities=13% Similarity=0.050 Sum_probs=138.0
Q ss_pred cEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 20 PIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
..+..|+|++..++..+ ++.|..||..+++.. .+. ....+.+++|+|+++++++. . ..|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence 46789999866555543 789999998876543 232 35679999999999877764 3 459999998876432222
Q ss_pred ccC--CCCCeeEEEEecCCCEEEEEeCC-----cEEEEEccC---------CCCCceeEeCCCCCEEE-EEcCCCeEEEE
Q psy16005 98 FHP--IGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLPI---------DYEPSSISLDHEHGLVA-VGGADSKISIV 160 (248)
Q Consensus 98 ~~~--~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 160 (248)
... ....+..++++|+|+.+++.... ...+|.+.. ...+..++++|+++.++ +...++.|.+|
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~ 206 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRV 206 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEE
Confidence 111 12358899999999876655421 234554431 12345778999998664 44567899999
Q ss_pred EC----C-ce-----eeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEc-CCCc
Q psy16005 161 EN----G-AK-----VSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFS-PSNE 228 (248)
Q Consensus 161 ~~----~-~~-----~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~ 228 (248)
+. + .. ...+. ....+..++++++|.+.++...++.|..||. +++...... .+...+++++|+ |+++
T Consensus 207 d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 207 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEESTTSC
T ss_pred EcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEecCCCC
Confidence 83 3 21 11111 1234678999999987777666788999998 454433333 344569999998 8887
Q ss_pred EEEEEc
Q psy16005 229 YLVASD 234 (248)
Q Consensus 229 ~l~~~~ 234 (248)
.|+.++
T Consensus 285 ~L~vt~ 290 (326)
T 2ghs_A 285 RLLVTS 290 (326)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 775543
No 212
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.59 E-value=2.4e-12 Score=99.48 Aligned_cols=208 Identities=14% Similarity=0.121 Sum_probs=137.1
Q ss_pred C--CCCCEEEEeC--CcEEEEEecCCC----ceeeeee------c-CCcceEEEEECcCCcEEEEEccC------CeEEE
Q psy16005 26 D--PKGKNFLYTN--GNSVIIRNIENP----AISDIYT------E-HSCAVNVAKYSPSGFYIASGDIS------GKVRI 84 (248)
Q Consensus 26 s--~~~~~l~~~~--~~~v~v~~~~~~----~~~~~~~------~-~~~~v~~~~~s~~~~~l~~~~~d------g~i~i 84 (248)
+ +++++|++.+ ++.|+++|+.+. +..+.+. . ....-..+..+|+| +++++..+ |.|.+
T Consensus 90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred CCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence 7 8899988875 789999998754 4444442 1 11245567888999 66666554 78999
Q ss_pred EECCCCceeeeeeccCCC-CCeeEEEEecCCCEEEEEe--------------------CCcEEEEEccCC----------
Q psy16005 85 WDTVNKEHILKNEFHPIG-GPIKDIAWSPDNQRMISIV--------------------ENGAKVSSLPID---------- 133 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~--------------------~~~~~i~~~~~~---------- 133 (248)
.|.++.+.+......... .--+.+.|+|+++.++++. .+.+.+|++...
T Consensus 169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 999998865433333222 2345688899999888885 466789988532
Q ss_pred --CCCceeEe--CCCCCEEEEEc------CCCeEEEEE--CCce--eee--ecc-----------------cCCCceEEE
Q psy16005 134 --YEPSSISL--DHEHGLVAVGG------ADSKISIVE--NGAK--VSS--LPI-----------------DYEPSSISL 180 (248)
Q Consensus 134 --~~~~~~~~--~~~~~~~~~~~------~~~~i~~~~--~~~~--~~~--~~~-----------------~~~~~~~~~ 180 (248)
..+..+.+ +|+++++.++. .+++|.+|. .++. .+. ++. ...+..+.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 12344444 89999877766 455776543 2211 011 110 234688999
Q ss_pred cCCCCEEEEEcC-CCcEEEEEcCCC---CCCCccccc-------C------CcCeEEEEEcCCCcEEEEEc
Q psy16005 181 DHEHGLVAVGGA-DSKVHIYELNNK---SLSPKAELD-------H------LGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 181 s~~~~~l~~~~~-d~~v~i~d~~~~---~~~~~~~~~-------~------~~~v~~~~~s~~~~~l~~~~ 234 (248)
||||++|.++.. .+.|.+||+... +.+.....+ | .+....++++|||++|+++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999988875 678999998633 222222212 0 01368899999999999887
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.59 E-value=3.1e-13 Score=113.41 Aligned_cols=213 Identities=12% Similarity=0.150 Sum_probs=133.7
Q ss_pred CCCCCEEEEeC--C----cEEEEEecC---CCceeeee------ecCCcceEEEEECcCCcEEEEEccC-----CeEEEE
Q psy16005 26 DPKGKNFLYTN--G----NSVIIRNIE---NPAISDIY------TEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIW 85 (248)
Q Consensus 26 s~~~~~l~~~~--~----~~v~v~~~~---~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw 85 (248)
+|+|++++... . ..+++.+.. .++....+ .+|...+..++|||||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 38999988764 2 244555544 34333221 1233468899999999999876543 369999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc---------------EEEEEccCCC--------------CC
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG---------------AKVSSLPIDY--------------EP 136 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---------------~~i~~~~~~~--------------~~ 136 (248)
|+.+++.+.. ... ...+..++|+|| +.|+.+..+. +.+|++.... ..
T Consensus 195 dl~tg~~~~~-~~~--~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~ 270 (741)
T 1yr2_A 195 GVADGKPLAD-ELK--WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG 270 (741)
T ss_dssp ETTTCCEEEE-EEE--EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred ECCCCCCCCc-cCC--CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE
Confidence 9999885422 111 122357899999 9888887432 4456653211 23
Q ss_pred ceeEeCCCCCEEEEEcCC-----CeEEEEE--CCc-e-eeeecccC-CCceEEEcCCCCEEEEEcC----CCcEEEEEcC
Q psy16005 137 SSISLDHEHGLVAVGGAD-----SKISIVE--NGA-K-VSSLPIDY-EPSSISLDHEHGLVAVGGA----DSKVHIYELN 202 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~-----~~i~~~~--~~~-~-~~~~~~~~-~~~~~~~s~~~~~l~~~~~----d~~v~i~d~~ 202 (248)
..+.++|+|++++....+ ..|++|| .+. . ...+.... ..... ++|+|+.|+..+. ++.|.+||+.
T Consensus 271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~ 349 (741)
T 1yr2_A 271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS 349 (741)
T ss_dssp EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 467899999988876644 3788988 331 2 33343222 23333 4589998887765 3459999998
Q ss_pred CCC-CCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 203 NKS-LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 203 ~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
++. ....+...+...+..++|+ ++.++++...|+..+||.+
T Consensus 350 ~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 350 GSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp SSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred CCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 752 2223333445557778887 5667788888888777754
No 214
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.55 E-value=3.1e-12 Score=97.94 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=147.5
Q ss_pred EEeCCCCCEEEEeC------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------cCCeEEEEE
Q psy16005 23 LGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWD 86 (248)
Q Consensus 23 ~~~s~~~~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd 86 (248)
....|+++.++..+ ++.|.++|..+++.+..+..-..+ . ++++|||+++++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 45578999888874 469999999999999888755555 4 99999999888775 357899999
Q ss_pred CCCCceeeeeeccC-----CCCCeeEEEEecCCCEEEEEeC---CcEEEEEccCCCCCceeE-------eCCCCCEEEEE
Q psy16005 87 TVNKEHILKNEFHP-----IGGPIKDIAWSPDNQRMISIVE---NGAKVSSLPIDYEPSSIS-------LDHEHGLVAVG 151 (248)
Q Consensus 87 ~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~ 151 (248)
..+.+.+....+.. .......++|+|||++++++.. +.+.++|+.....+..+. +....+.+++.
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~ 195 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 195 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEE
Confidence 99988664444432 0135678999999999998863 346788876554433332 22234556677
Q ss_pred cCCCeEEEEECC---ceeeeeccc-----CCC-ceEEEc-CCCCEEEEEcCCCcEEEEEcCCCCC--CCccc--------
Q psy16005 152 GADSKISIVENG---AKVSSLPID-----YEP-SSISLD-HEHGLVAVGGADSKVHIYELNNKSL--SPKAE-------- 211 (248)
Q Consensus 152 ~~~~~i~~~~~~---~~~~~~~~~-----~~~-~~~~~s-~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~-------- 211 (248)
+.||.+.+.+.+ +........ ..+ ...+|. ++|++++ .+.+|.|++.|+.+... .....
T Consensus 196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 274 (386)
T ss_dssp ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccc
Confidence 778888777732 222211111 111 224554 6776555 45589999999976642 21111
Q ss_pred cc-CCcCeEEEEEcCCCcEEEEEcC----------CCeEEEEECCCCC
Q psy16005 212 LD-HLGPVTDCSFSPSNEYLVASDA----------HRKVVLYRVPDFE 248 (248)
Q Consensus 212 ~~-~~~~v~~~~~s~~~~~l~~~~~----------d~~i~vw~~~~~~ 248 (248)
.+ ..+....++++|+++.++.... .+.|.+.|+.+++
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 01 1234456788999998877642 2579999998875
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.55 E-value=4.9e-12 Score=94.69 Aligned_cols=187 Identities=9% Similarity=0.022 Sum_probs=126.4
Q ss_pred CCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC--
Q psy16005 57 HSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID-- 133 (248)
Q Consensus 57 ~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~-- 133 (248)
...-..+..|+|+ +.++++...++.|..||..+++.. ... ....+.+++++++|+++ ++..+++.+++....
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~~~~i~~~~dG~l~-v~~~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT---MDAPVSSVALRQSGGYV-ATIGTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE---CSSCEEEEEEBTTSSEE-EEETTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe---CCCceEEEEECCCCCEE-EEECCeEEEEECCCCcE
Confidence 3344568899995 556667777899999999887642 122 34678999999999954 455777777775321
Q ss_pred ------------CCCceeEeCCCCCEEEEEcC-----------CCeEEEEEC-CceeeeecccCCCceEEEcCCCCEEEE
Q psy16005 134 ------------YEPSSISLDHEHGLVAVGGA-----------DSKISIVEN-GAKVSSLPIDYEPSSISLDHEHGLVAV 189 (248)
Q Consensus 134 ------------~~~~~~~~~~~~~~~~~~~~-----------~~~i~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~ 189 (248)
..+..+.++|+|+++++... .+.|+.++. ++..........++.++|+|+++.|++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 12456889999997775422 245666663 333332333345688999999986654
Q ss_pred -EcCCCcEEEEEcC--CCCCCC--cc--cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 190 -GGADSKVHIYELN--NKSLSP--KA--ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 190 -~~~d~~v~i~d~~--~~~~~~--~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+.++.|..|++. ++.... .+ ...+...+..++++++|++.++...++.|..||.++++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 4567889999973 443211 11 11233567899999999888777778899999988764
No 216
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.55 E-value=2.9e-12 Score=96.41 Aligned_cols=189 Identities=15% Similarity=0.101 Sum_probs=129.9
Q ss_pred CcceEEEEECcCCcEEEE-------EccCCeEEEEECCCCceeeeeec---cCCCCCeeEEEEecC-CCEEEEEeCCcEE
Q psy16005 58 SCAVNVAKYSPSGFYIAS-------GDISGKVRIWDTVNKEHILKNEF---HPIGGPIKDIAWSPD-NQRMISIVENGAK 126 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~~~~~ 126 (248)
-....+++|+++++++++ +..++.|.+||..+++... ... .++...+.+++++++ ++.+++...+++.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 345678999999988877 5778999999988776431 111 113467899999999 7766666566777
Q ss_pred EEEccC--------------CCCCceeEeCCCCCEEEEEcCC---------------CeEEEEEC-CceeeeecccCCCc
Q psy16005 127 VSSLPI--------------DYEPSSISLDHEHGLVAVGGAD---------------SKISIVEN-GAKVSSLPIDYEPS 176 (248)
Q Consensus 127 i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~---------------~~i~~~~~-~~~~~~~~~~~~~~ 176 (248)
+|+... ...+..++++++++++++...+ +.|..++. ++..........+.
T Consensus 96 ~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~ 175 (314)
T 1pjx_A 96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN 175 (314)
T ss_dssp EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE
T ss_pred EEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcc
Confidence 776430 0236688899999888876654 56777874 33322223334567
Q ss_pred eEEEc----CCCCEEEEE-cCCCcEEEEEcC-CCCCC----CcccccCC-cCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 177 SISLD----HEHGLVAVG-GADSKVHIYELN-NKSLS----PKAELDHL-GPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 177 ~~~~s----~~~~~l~~~-~~d~~v~i~d~~-~~~~~----~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.++++ |+++.++++ ..++.|.+||.. +++.. ......+. ..+..++++++|+++++...++.|.+||.+
T Consensus 176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 89999 999765554 567899999986 33311 01111232 567889999999988887778899999987
Q ss_pred CC
Q psy16005 246 DF 247 (248)
Q Consensus 246 ~~ 247 (248)
++
T Consensus 256 ~g 257 (314)
T 1pjx_A 256 GG 257 (314)
T ss_dssp CB
T ss_pred CC
Confidence 54
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=7.1e-11 Score=91.08 Aligned_cols=222 Identities=9% Similarity=0.018 Sum_probs=140.7
Q ss_pred EeCCCCCEEEEeC--Cc----EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------cCCeEEEEEC
Q psy16005 24 GGDPKGKNFLYTN--GN----SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDT 87 (248)
Q Consensus 24 ~~s~~~~~l~~~~--~~----~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~ 87 (248)
...|+++.++..+ +. .|.++|..+++.+..+.....+ .++++||+++++.+. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 3457887777654 22 8899999999988777644444 999999999998875 3678999999
Q ss_pred CCCceeeeeecc-C----CCCCeeEEEEecCCCEEEEEeC---CcEEEEEccCCCCCce-------eEeCCCC-CEEEEE
Q psy16005 88 VNKEHILKNEFH-P----IGGPIKDIAWSPDNQRMISIVE---NGAKVSSLPIDYEPSS-------ISLDHEH-GLVAVG 151 (248)
Q Consensus 88 ~~~~~~~~~~~~-~----~~~~v~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~~-------~~~~~~~-~~~~~~ 151 (248)
.+.+.+....+. . +......++|+|||++|+++.. +.+.+++ .....+.. +.+.|++ +.+++.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~ 183 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLL 183 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEE
Confidence 887755433332 0 0134568999999999998874 3367777 54433222 2233443 455666
Q ss_pred cCCCeEEEEEC-Cceeeeec-----ccCCC--ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC--Ccccc--------c
Q psy16005 152 GADSKISIVEN-GAKVSSLP-----IDYEP--SSISLDHEHGLVAVGGADSKVHIYELNNKSLS--PKAEL--------D 213 (248)
Q Consensus 152 ~~~~~i~~~~~-~~~~~~~~-----~~~~~--~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~--------~ 213 (248)
+.|+.+..++. ++...... ....+ ....+.+++..++..+..+.+.+.|+.+.... ..+.. +
T Consensus 184 ~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~ 263 (373)
T 2mad_H 184 CAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADT 263 (373)
T ss_pred cCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccc
Confidence 78888888885 33332211 11111 22455666665555557789999999765321 11100 0
Q ss_pred -CCcCeEEEEEcCCCcEEEEEcC----------CCeEEEEECCCCC
Q psy16005 214 -HLGPVTDCSFSPSNEYLVASDA----------HRKVVLYRVPDFE 248 (248)
Q Consensus 214 -~~~~v~~~~~s~~~~~l~~~~~----------d~~i~vw~~~~~~ 248 (248)
.......+.++|+++.++.+.. ++.|.++|+.+++
T Consensus 264 ~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~ 309 (373)
T 2mad_H 264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ 309 (373)
T ss_pred eecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE
Confidence 1223445789999988877643 3589999998764
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.50 E-value=9e-12 Score=96.98 Aligned_cols=220 Identities=14% Similarity=0.102 Sum_probs=143.5
Q ss_pred CCCCEEEEeC--C----cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------cCCeEEEEECCCC
Q psy16005 27 PKGKNFLYTN--G----NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVNK 90 (248)
Q Consensus 27 ~~~~~l~~~~--~----~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~ 90 (248)
|+++.++..+ + +.|.++|..+++.+..+..-..+ .+.++||+++++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 5677666654 3 79999999999999888755555 899999999888876 3678999999998
Q ss_pred ceeeeeeccCC-----CCCeeEEEEecCCCEEEEEeCC---cEEEEEccCCCCCceeEe------CCC-CCEEEEEcCCC
Q psy16005 91 EHILKNEFHPI-----GGPIKDIAWSPDNQRMISIVEN---GAKVSSLPIDYEPSSISL------DHE-HGLVAVGGADS 155 (248)
Q Consensus 91 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~ 155 (248)
+.+....+.+. ......++|+|||++++++... .+.+.|+.....+..+.. .|+ ...+++.+.||
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence 86644444310 1345678999999999998742 356777655443333322 222 24555566677
Q ss_pred eEEEEEC--Cceee----eecccCCC--ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC--Cccc--------cc-CCc
Q psy16005 156 KISIVEN--GAKVS----SLPIDYEP--SSISLDHEHGLVAVGGADSKVHIYELNNKSLS--PKAE--------LD-HLG 216 (248)
Q Consensus 156 ~i~~~~~--~~~~~----~~~~~~~~--~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~--------~~-~~~ 216 (248)
.+.+.+. ++... .+.....+ ..+.+++++..++..+..+.|.+.|....... .... .+ ...
T Consensus 240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~ 319 (426)
T 3c75_H 240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG 319 (426)
T ss_dssp SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence 7766663 22221 11111111 34577999888777788899999999654321 1100 00 112
Q ss_pred CeEEEEEcCCCcEEEEEcC----------CCeEEEEECCCCC
Q psy16005 217 PVTDCSFSPSNEYLVASDA----------HRKVVLYRVPDFE 248 (248)
Q Consensus 217 ~v~~~~~s~~~~~l~~~~~----------d~~i~vw~~~~~~ 248 (248)
....++++|+++.++.... ++.|.+.|+.+++
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 2234689999987776632 3579999998875
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.50 E-value=7.1e-11 Score=92.26 Aligned_cols=182 Identities=10% Similarity=-0.016 Sum_probs=123.1
Q ss_pred cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc---EEEEEcc----
Q psy16005 59 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG---AKVSSLP---- 131 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~i~~~~---- 131 (248)
.....++|+++++++++...++.|++||..++.... .... ..... ++|+++++.|+++..++ +.+++..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~--~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT--VHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE--EEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE--eecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 357899999999988887778999999998776432 2222 23334 99999999988887644 3333321
Q ss_pred ----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECC-ceeeee----cc---cCCCc-eEEEcCC-CCEEEEEc
Q psy16005 132 ----------IDYEPSSISLDHEHGLVAVGGADSKISIVENG-AKVSSL----PI---DYEPS-SISLDHE-HGLVAVGG 191 (248)
Q Consensus 132 ----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~----~~---~~~~~-~~~~s~~-~~~l~~~~ 191 (248)
....+..++++|++..|+++..++.|+.|+.. .....+ .. ...+. .++++|+ +.++++-.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 22446788999955555557778899999932 222222 11 11234 9999995 55556666
Q ss_pred CCCcEEEEEcCCCCCCCcccccC---------------CcCeEEEEEcCCCcEEEEEc-CCCeEEEEECCCC
Q psy16005 192 ADSKVHIYELNNKSLSPKAELDH---------------LGPVTDCSFSPSNEYLVASD-AHRKVVLYRVPDF 247 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~~~ 247 (248)
.++.|+.|+...... .. .++ -.....++++|+|+++++-. .++.|+.|++.++
T Consensus 287 ~~~~I~~~~~~g~~~--~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 287 NLSSVYKITPDGECE--WF-CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp TTTEEEEECTTCCEE--EE-EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred CCCEEEEEecCCCEE--EE-EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 788899998764311 11 111 23478999999999777777 7899999997665
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.46 E-value=1.2e-10 Score=88.31 Aligned_cols=180 Identities=10% Similarity=-0.000 Sum_probs=121.8
Q ss_pred ceEEEEECcC-CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC-----
Q psy16005 60 AVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID----- 133 (248)
Q Consensus 60 ~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~----- 133 (248)
...++.|+|+ +.++++...++.|..||..+++.. ... ....+.+++|+++|+++++. .+++.+|+....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA---LPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE---CSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE---CCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEE
Confidence 3467889997 456667777899999999877532 122 24679999999999877754 667777775321
Q ss_pred ---------CCCceeEeCCCCCEEEEEcC------CCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEE-cCCCcEE
Q psy16005 134 ---------YEPSSISLDHEHGLVAVGGA------DSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVG-GADSKVH 197 (248)
Q Consensus 134 ---------~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~d~~v~ 197 (248)
..+..+.++|+|+++++... .+.|..++.++..........++.++|+|+++.++++ +.++.|.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 12457789999997765532 3567777743322222222346789999999876555 5578899
Q ss_pred EEEcC--CC-CCCC--ccc--ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 198 IYELN--NK-SLSP--KAE--LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 198 i~d~~--~~-~~~~--~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
+||+. ++ +... .+. ......+..++++++|.++++...++.|.+|+.
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred EEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 99986 55 3211 111 113345788999999987777766788999987
No 221
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.46 E-value=1.1e-11 Score=99.03 Aligned_cols=208 Identities=11% Similarity=0.085 Sum_probs=145.1
Q ss_pred CCCCEEEEeC--CcEEEEEecCCCceeeeeec-CCcceEEEEE-C-cCCcEEEEEc------------------cCCeEE
Q psy16005 27 PKGKNFLYTN--GNSVIIRNIENPAISDIYTE-HSCAVNVAKY-S-PSGFYIASGD------------------ISGKVR 83 (248)
Q Consensus 27 ~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~-~~~~v~~~~~-s-~~~~~l~~~~------------------~dg~i~ 83 (248)
+||++++... ++.|.+.|+++.+....+.- .......+++ + |++++++.++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4899988875 67899999999998775542 2345788888 5 8999998874 346899
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc----------------EEEEEccCCCCCceeEeCCCCCE
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG----------------AKVSSLPIDYEPSSISLDHEHGL 147 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----------------~~i~~~~~~~~~~~~~~~~~~~~ 147 (248)
+.|.++.+........+ ....++++|||+++++++.+. +.+.+..... ...++|+.
T Consensus 179 vID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~-----~~v~~Gk~ 250 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE-----KAIAAGDY 250 (595)
T ss_dssp EEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-----HHHHHTCS
T ss_pred EEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee-----EeccCCCe
Confidence 99999887655444433 356788999999999998654 2333322111 12334443
Q ss_pred EEEEcCCCeEEEEECCc----e-eeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCC------C----Cccc
Q psy16005 148 VAVGGADSKISIVENGA----K-VSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSL------S----PKAE 211 (248)
Q Consensus 148 ~~~~~~~~~i~~~~~~~----~-~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~------~----~~~~ 211 (248)
... +.+.+.|..+ . +..++....+.++.++|||+++++++ .+.+|.++|+.+.+. . ....
T Consensus 251 ~~i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 251 QEL----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp EEE----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred eEE----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 333 4589999443 4 56777888899999999999887776 578999999986521 0 0011
Q ss_pred ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 212 LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 212 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..-......++|+|+|...++.--|+.|.+||+++
T Consensus 327 v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 12335679999999994344556789999999754
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.44 E-value=2.9e-12 Score=98.13 Aligned_cols=211 Identities=9% Similarity=-0.003 Sum_probs=133.1
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecC-------CcceEEEEECc
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEH-------SCAVNVAKYSP 68 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~-------~~~v~~~~~s~ 68 (248)
+++..++.+.. + .+.++|||++++.++ ++.|.+||+.+++.+..+... ......++++|
T Consensus 57 ~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp 133 (368)
T 1mda_H 57 VTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133 (368)
T ss_dssp EEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred eEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence 45556665443 3 799999999998874 578999999999999887643 12356899999
Q ss_pred CCcEEEEEcc--CCeEEE--EECCCCceeeeeeccCC-----CCCeeEEEEecC--------------------------
Q psy16005 69 SGFYIASGDI--SGKVRI--WDTVNKEHILKNEFHPI-----GGPIKDIAWSPD-------------------------- 113 (248)
Q Consensus 69 ~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-------------------------- 113 (248)
||++++++.. +..+.+ +|+.+- ......+. .+.-..++++++
T Consensus 134 DGk~lyVan~~~~~~v~V~~iD~~tv---~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i 210 (368)
T 1mda_H 134 SSACLLFFLFGSSAAAGLSVPGASDD---QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ 210 (368)
T ss_dssp TSSCEEEEECSSSCEEEEEETTTEEE---EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred CCCEEEEEccCCCCeEEEEEEchhhc---eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeee
Confidence 9999998864 457888 888651 11111000 000001122222
Q ss_pred -----------CCEEEEEeCCcEEEEEccCC----------------------CCCceeEeCCCCCEEEEEcC-------
Q psy16005 114 -----------NQRMISIVENGAKVSSLPID----------------------YEPSSISLDHEHGLVAVGGA------- 153 (248)
Q Consensus 114 -----------~~~l~~~~~~~~~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~------- 153 (248)
+..++..+.+.+.+.++... .....+.++++++.+.++..
T Consensus 211 ~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 211 NCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL 290 (368)
T ss_dssp CBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred eCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc
Confidence 22222222222333343211 11122778999987776533
Q ss_pred --CCeEEEEE--CCceeeeecccCCCceEEEcCCCCE-EEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 154 --DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGL-VAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 154 --~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
++.+.++| +.+.+..++....+..++++|||+. +++.. .++.|.++|+.+++.+.....+ .....+++.+
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred ccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC--CCCCEEEeec
Confidence 23566999 5677788887778999999999984 55555 5899999999999887655422 3345666544
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=1.2e-10 Score=88.98 Aligned_cols=183 Identities=12% Similarity=0.007 Sum_probs=128.8
Q ss_pred cccCCcEEEEeCCCCCEEEEeC------CcEEEEEecCCCceeeeeecC------CcceEEEEECcCC-cEEEEEc---c
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEH------SCAVNVAKYSPSG-FYIASGD---I 78 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~------~~~v~v~~~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~~~~---~ 78 (248)
.+...+..++++++|+++++-. ++.|.+||+.+++..+.+... ...+..++++|++ ..+++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3556899999999998666543 479999999988876655422 2346889999864 4445544 6
Q ss_pred CCeEEEEECCCCceeeeeeccCC-----------------------------CCCeeEEEEecCCCEEEEEeCCcEEEEE
Q psy16005 79 SGKVRIWDTVNKEHILKNEFHPI-----------------------------GGPIKDIAWSPDNQRMISIVENGAKVSS 129 (248)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~~~~~~~~~i~~ 129 (248)
++.|.+||+.+++... .+..| ...+..++|+||++.|+++...+.++|.
T Consensus 144 ~~~i~v~d~~~g~~~r--~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~ 221 (343)
T 2qe8_A 144 KAALIRVDLQTGLAAR--VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYR 221 (343)
T ss_dssp GCEEEEEETTTCCEEE--ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred CCeEEEEECCCCCEEE--EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEE
Confidence 7899999998776432 11111 1236889999999999998877767776
Q ss_pred ccC----------------------CCCCceeEeCCCCCEEEEEcCCCeEEEEEC--Cceeeeecc--cCCCceEEEcCC
Q psy16005 130 LPI----------------------DYEPSSISLDHEHGLVAVGGADSKISIVEN--GAKVSSLPI--DYEPSSISLDHE 183 (248)
Q Consensus 130 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~--~~~~~~~~~s~~ 183 (248)
++. ...+..++++++++++++...++.|..||. ++....... ...+..++++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD 301 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred EEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence 531 124567999999999999999999999996 433222222 334789999999
Q ss_pred CCEEEEEcCCCcEEEE
Q psy16005 184 HGLVAVGGADSKVHIY 199 (248)
Q Consensus 184 ~~~l~~~~~d~~v~i~ 199 (248)
+.++++.+..+.+.+|
T Consensus 302 g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 302 GYLYFDCNQLHHSAPL 317 (343)
T ss_dssp SCEEEEECCGGGSGGG
T ss_pred CcEEEEeCcccccccc
Confidence 8877777655444333
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.41 E-value=4.4e-11 Score=99.19 Aligned_cols=216 Identities=11% Similarity=0.064 Sum_probs=140.4
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecC-C----cceEE-EEECcCCcEEEEEcc------CCeEEEEECCCCceeee
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEH-S----CAVNV-AKYSPSGFYIASGDI------SGKVRIWDTVNKEHILK 95 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~-~----~~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~ 95 (248)
+..++++. ++.|+.+|..+++.+-.+... . ..+.+ ... .+..+++++. +|.|+.+|..+++.+..
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 44565554 999999999999988776543 1 11211 111 2345555543 68999999999997765
Q ss_pred eeccCCC------------------------------CCeeEEEEecCCCEEEEEeCCc--------------------E
Q psy16005 96 NEFHPIG------------------------------GPIKDIAWSPDNQRMISIVENG--------------------A 125 (248)
Q Consensus 96 ~~~~~~~------------------------------~~v~~~~~~~~~~~l~~~~~~~--------------------~ 125 (248)
....... .....++++|++..++.+..++ +
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 5442211 0113578888888877765442 2
Q ss_pred ---------EEEEccCCC----------CCceeEeCCCC---CEEEEEcCCCeEEEEE--CCceeeeecccCC-------
Q psy16005 126 ---------KVSSLPIDY----------EPSSISLDHEH---GLVAVGGADSKISIVE--NGAKVSSLPIDYE------- 174 (248)
Q Consensus 126 ---------~i~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~------- 174 (248)
.+|.++... .+..+....+| ..++.++.+|.++++| +++.+...+....
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 345443211 12222222356 6788899999999999 6777665542210
Q ss_pred -----------------------------CceEEEcCCCCEEEEEcC---------------------------------
Q psy16005 175 -----------------------------PSSISLDHEHGLVAVGGA--------------------------------- 192 (248)
Q Consensus 175 -----------------------------~~~~~~s~~~~~l~~~~~--------------------------------- 192 (248)
-..++++|++.++++...
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 025788998888877543
Q ss_pred ----------CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 193 ----------DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 193 ----------d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.|.|..||+.+++..-... +..++....++.++..++.++.||.+++||.++++
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 2779999999998754443 33445555667788888889999999999999986
No 225
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.40 E-value=4.9e-10 Score=81.53 Aligned_cols=203 Identities=9% Similarity=0.002 Sum_probs=128.9
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC---CcEEEEEecCCCceeeeeecCCc-ceEEEEECcCCcEEEEEccCCeE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSC-AVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
+++..++.........+.|+||+.++++.+ ++.|.++|+.+++....+..... ....+++.. ++..++.-.++.+
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v 88 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEE
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEE
Confidence 456667654444568999999975555543 57999999999998887652221 223455542 2444455567899
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.++|..+.+.+...... .. ....+++||+.++++ ..++.+.++|
T Consensus 89 ~viD~~t~~v~~~i~~g--~~--~g~glt~Dg~~l~vs-------------------------------~gs~~l~viD~ 133 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTHQ--MK--DGWGLATDGKILYGS-------------------------------DGTSILYEIDP 133 (266)
T ss_dssp EEEETTTTEEEEEEECC--SS--SCCEEEECSSSEEEE-------------------------------CSSSEEEEECT
T ss_pred EEEECCCCcEEEEEECC--CC--CeEEEEECCCEEEEE-------------------------------CCCCeEEEEEC
Confidence 99999988765443332 11 123355566655443 2345666666
Q ss_pred -CCceeeeecccC------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc------------CCcCeEEEE
Q psy16005 162 -NGAKVSSLPIDY------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD------------HLGPVTDCS 222 (248)
Q Consensus 162 -~~~~~~~~~~~~------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~------------~~~~v~~~~ 222 (248)
+.+....++... .++.+.+. +|+..+....++.|.+.|..+++.+.....+ .......++
T Consensus 134 ~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa 212 (266)
T 2iwa_A 134 HTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIA 212 (266)
T ss_dssp TTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEE
T ss_pred CCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEE
Confidence 334444444321 24677777 6755555556789999999999876554332 113568999
Q ss_pred EcCCCcEE-EEEcCCCeEEEEECCC
Q psy16005 223 FSPSNEYL-VASDAHRKVVLYRVPD 246 (248)
Q Consensus 223 ~s~~~~~l-~~~~~d~~i~vw~~~~ 246 (248)
|+|+++.+ +++...+++.+.++..
T Consensus 213 ~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 213 WDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EcCCCCEEEEECCCCCeEEEEEEec
Confidence 99998755 5555678888887753
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.39 E-value=4.2e-14 Score=109.09 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=96.2
Q ss_pred CCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCee
Q psy16005 28 KGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106 (248)
Q Consensus 28 ~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 106 (248)
++..+++++ ++.|+.||..+|+....+.. +.+.+..+..++..+++++.||.|+.||.++++.+....... ...+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~-~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI-PELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH-HHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC-ccccc
Confidence 456666665 89999999999999877765 455555556677788888999999999998887543322210 00000
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCC
Q psy16005 107 DIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEH 184 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~ 184 (248)
-+| .. ..+..+++++.++.++.|| +++.+..+.... ...++|++
T Consensus 85 ---~sp---------------------------~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~ 130 (369)
T 2hz6_A 85 ---ASP---------------------------CR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPST 130 (369)
T ss_dssp ---TCS---------------------------CC------CCCCEEEEEEEEECCC-----------------------
T ss_pred ---cCc---------------------------eE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccC
Confidence 000 00 0112344455667777777 455555544332 23456678
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC---cEEEEEcCCCeEEEEECCCCC
Q psy16005 185 GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN---EYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 185 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..+++++.++.|+.||.++++..-..... ......++++. ..+++++.||.++.||.++|+
T Consensus 131 ~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 131 SLLYLGRTEYTITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp --EEEEEEEEEEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CEEEEEecCCEEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 88999999999999999999876544321 11223344432 457778889999999998875
No 227
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=1.1e-11 Score=95.15 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=100.8
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcc--------------------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECC
Q psy16005 104 PIKDIAWSPDNQRMISIVENGAKVSSLP--------------------IDYEPSSISLDHEHGLVAVGGADSKISIVENG 163 (248)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~~~~~i~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (248)
.+..+++++....+++++.+++.+|++. .+. +..++| +++.++++ .++.|++||..
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 6889999999999999999999888743 123 667788 88999988 88999999943
Q ss_pred cee---eeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 164 AKV---SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 164 ~~~---~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
... ....+...+..+.+.+. .+++++.||.|.+||++++.... +...|++++|||+| ++.+..||+++
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 221 11223444566665543 38888999999999999877532 45689999999999 67788999999
Q ss_pred EEECCCC
Q psy16005 241 LYRVPDF 247 (248)
Q Consensus 241 vw~~~~~ 247 (248)
+|+.+.+
T Consensus 186 ~~~~~~~ 192 (388)
T 1xip_A 186 SFAWRNG 192 (388)
T ss_dssp EEEEETT
T ss_pred EEcCCCc
Confidence 9987653
No 228
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.39 E-value=2.8e-10 Score=85.42 Aligned_cols=176 Identities=11% Similarity=0.049 Sum_probs=120.4
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecC----CcceEEEEECcCCcEEEE----Ecc---------
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEH----SCAVNVAKYSPSGFYIAS----GDI--------- 78 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~----~~~--------- 78 (248)
...+..++++++|+++++.. ++.|.+|+.+ ++........ ...+.+++++|+|++.++ |..
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence 45688999999999777765 5789999976 5533222111 134678999999998886 432
Q ss_pred ----CCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-------cEEEEEccC-------------CC
Q psy16005 79 ----SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-------GAKVSSLPI-------------DY 134 (248)
Q Consensus 79 ----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~~i~~~~~-------------~~ 134 (248)
.+.|..+|..+++..... .......++|+||++.|+.+... .+.++++.. ..
T Consensus 164 ~~~~~~~v~~~d~~~g~~~~~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQRMA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp CSSSCEEEEEECSSSCCCEEEE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred cccCCCeEEEEcCCCCcEEEEe----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 256777887666543211 23456889999999988777653 456666542 22
Q ss_pred CCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEE
Q psy16005 135 EPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYE 200 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d 200 (248)
.+..+.++++|++.++ .. +.|.+|+ .++.+..+..+..+.+++|+|+++.|.+++.++ ++.++
T Consensus 240 ~pdgi~~d~~G~lwv~-~~-~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSS-SG-TGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CCCSEEECTTSCEEEC-CS-SEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCCeEEECCCCCEEEe-cC-CcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 3457888999995554 44 4589999 667777777666789999999998888877664 44333
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.36 E-value=2.2e-09 Score=78.89 Aligned_cols=207 Identities=11% Similarity=-0.032 Sum_probs=130.4
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 94 (248)
..+..++|+|++..|+.+. .+.|.+++++.......+.........++++|++..| ++-...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~- 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR- 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-
Confidence 3467899999877777764 7899999987655433332223467899999965545 45556789999998754321
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCC----cEEEEEccC----------CCCCceeEeCCCCC-EEEEEcCCCeEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVEN----GAKVSSLPI----------DYEPSSISLDHEHG-LVAVGGADSKISI 159 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----~~~i~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 159 (248)
............++++|++..|+.+... .+..++++. -..+..+++++++. ++++....+.|..
T Consensus 115 -~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~ 193 (267)
T 1npe_A 115 -VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (267)
T ss_dssp -EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence 1122222467899999977776666543 233444321 12356788998765 4455666788999
Q ss_pred EECC-ceee-eecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc
Q psy16005 160 VENG-AKVS-SLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 160 ~~~~-~~~~-~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 228 (248)
++.. .... .+.....+..++.. +..|+++. .++.|..+|..+++.......+.......+++.|++.
T Consensus 194 ~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 194 LNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9843 2222 22222345566654 45555544 5689999999988776555433223467788888764
No 230
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.36 E-value=3.5e-09 Score=77.87 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=131.9
Q ss_pred CCEEEEeCCcEEEEEecCCCcee-----eeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCceeeeeeccCCC
Q psy16005 29 GKNFLYTNGNSVIIRNIENPAIS-----DIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIG 102 (248)
Q Consensus 29 ~~~l~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 102 (248)
|++|+.+..+.|+.++++..... ..+......+.+++|++++..|+ +-...+.|..++...+... .......
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIRQDL 78 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEECTTC
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEEECCC
Confidence 45677776678899998765421 11222234578999999655554 5556789999999765432 2222222
Q ss_pred CCeeEEEEecCCCEEEEEeCCc--EEEEEccC---------C-CCCceeEeCCCCCEEEEEc-C--CCeEEEEE-CCcee
Q psy16005 103 GPIKDIAWSPDNQRMISIVENG--AKVSSLPI---------D-YEPSSISLDHEHGLVAVGG-A--DSKISIVE-NGAKV 166 (248)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~~---------~-~~~~~~~~~~~~~~~~~~~-~--~~~i~~~~-~~~~~ 166 (248)
.....+++++++..++.+.... +.+++++. . ..+..++++|++..+..+. . .+.|..++ .+...
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~ 158 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence 4678999999877777766433 44444431 1 3567888999655444443 3 46788777 44333
Q ss_pred eeec--ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE-cCCCeEEEE
Q psy16005 167 SSLP--IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS-DAHRKVVLY 242 (248)
Q Consensus 167 ~~~~--~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw 242 (248)
..+. ....+..++++|++..|+++. ..+.|..+|+......... ........++.. +..|+.+ ...+.|..+
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~--~~~~~P~gi~~d--~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL--EGLQYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE--ECCCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe--cCCCCceEEEEe--CCEEEEEECCCCeEEEE
Confidence 3332 223578899999877665554 5678999999764432211 122334666654 4455544 456899999
Q ss_pred ECCCCC
Q psy16005 243 RVPDFE 248 (248)
Q Consensus 243 ~~~~~~ 248 (248)
|..+++
T Consensus 235 d~~~g~ 240 (267)
T 1npe_A 235 DLAISK 240 (267)
T ss_dssp ETTTTE
T ss_pred eCCCCC
Confidence 987763
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.33 E-value=2.1e-09 Score=83.33 Aligned_cols=172 Identities=6% Similarity=0.059 Sum_probs=120.8
Q ss_pred CcEEEEeCCCCCEEEEeC-C------cEEEEEecCCCceeeeeecCCc---ceEEEEECcCCcEEEEEc-----------
Q psy16005 19 QPIVLGGDPKGKNFLYTN-G------NSVIIRNIENPAISDIYTEHSC---AVNVAKYSPSGFYIASGD----------- 77 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~------~~v~v~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~----------- 77 (248)
....+..+|+| .++++. + +.+.++|.++.+.+..+..... .-..+.|+|+++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 45567889999 555542 3 6899999999998888762212 234578899999888874
Q ss_pred --------cCCeEEEEECCCCceeeeeeccCCCCCeeEEEE--ecCCCEEEEEeC-----CcEEEEE-------------
Q psy16005 78 --------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW--SPDNQRMISIVE-----NGAKVSS------------- 129 (248)
Q Consensus 78 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~-----~~~~i~~------------- 129 (248)
...+|.+||+.+++......+.........+.| +|++++++++.+ ....+|.
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 368999999998765544444222234556666 999999988876 4433321
Q ss_pred --ccC-----------------CCCCceeEeCCCCCEEEEEc-CCCeEEEEEC-----Cceeeeeccc------------
Q psy16005 130 --LPI-----------------DYEPSSISLDHEHGLVAVGG-ADSKISIVEN-----GAKVSSLPID------------ 172 (248)
Q Consensus 130 --~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-----~~~~~~~~~~------------ 172 (248)
+.. ...+..+.+++++++|.++. ..+.|.+||. .+.+..+...
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 111 24467889999999877665 4689999982 2344455443
Q ss_pred ---CCCceEEEcCCCCEEEEEc
Q psy16005 173 ---YEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 173 ---~~~~~~~~s~~~~~l~~~~ 191 (248)
..+..++++|||++|+++.
T Consensus 378 ~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 378 KLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCSCCCCEEECTTSSEEEEEC
T ss_pred cCCCCCCEEEEcCCCCEEEEEc
Confidence 1479999999999999988
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.32 E-value=3.4e-10 Score=94.10 Aligned_cols=217 Identities=12% Similarity=0.111 Sum_probs=134.3
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecC--CcceEEEEECc---CCcEEEEEc------cCCeEEEEECCCCceeeee
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEH--SCAVNVAKYSP---SGFYIASGD------ISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~--~~~v~~~~~s~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 96 (248)
+..++++. ++.|+.+|..+|+.+-.+... ......+..+| ++. ++.++ .+|.|..||.++++.+...
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 44555655 999999999999987665432 11111112223 444 44443 3689999999999977554
Q ss_pred eccCCC-----------------------------CCeeEEEEecCCCEEEEEeCCc--------------------EE-
Q psy16005 97 EFHPIG-----------------------------GPIKDIAWSPDNQRMISIVENG--------------------AK- 126 (248)
Q Consensus 97 ~~~~~~-----------------------------~~v~~~~~~~~~~~l~~~~~~~--------------------~~- 126 (248)
...... ..-..++++|++..++.+..++ +.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 421110 1112577888877777776543 33
Q ss_pred --------EEEccCCCC----------CceeEeCCCCC---EEEEEcCCCeEEEEE--CCceeeeecccC----------
Q psy16005 127 --------VSSLPIDYE----------PSSISLDHEHG---LVAVGGADSKISIVE--NGAKVSSLPIDY---------- 173 (248)
Q Consensus 127 --------i~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~i~~~~--~~~~~~~~~~~~---------- 173 (248)
+|..+.... +.......+++ .++.++.+|.++++| +++.+...+...
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 343332100 00111112343 678889999999999 676653322110
Q ss_pred ------------------------------CCceEEEcCCCCEEEEEcC-------------------------------
Q psy16005 174 ------------------------------EPSSISLDHEHGLVAVGGA------------------------------- 192 (248)
Q Consensus 174 ------------------------------~~~~~~~s~~~~~l~~~~~------------------------------- 192 (248)
.-..++++|+..++++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 439 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM 439 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence 0123789998887776532
Q ss_pred --------------CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 193 --------------DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 193 --------------d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|.|..||+.+++..-... +..++..-.++..+..++.++.||.++.||.++||
T Consensus 440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP--YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CcccccCCCCCCCcceeEEEEECCCCCeEeEcc--CCCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 3779999999998754443 22333444566678889999999999999999986
No 233
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=1.3e-10 Score=96.81 Aligned_cols=184 Identities=10% Similarity=0.133 Sum_probs=116.4
Q ss_pred cCCcceEEEEECcCCcEEEEE-----ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc------
Q psy16005 56 EHSCAVNVAKYSPSGFYIASG-----DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG------ 124 (248)
Q Consensus 56 ~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------ 124 (248)
++...+..++|||||++||.+ +....|++||+.+++.+.. .+.. .....++|+ |++.|+.+..+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--VKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--EESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--ceeccEEEe-CCCEEEEEEecCcccccc
Confidence 345578899999999988853 2235799999999885432 2221 113567899 999999887552
Q ss_pred --------EEEEEccCCC---------------CCceeEeCCCCCEEEEEc----CCCeEEEEEC--Cc-eeeeecccCC
Q psy16005 125 --------AKVSSLPIDY---------------EPSSISLDHEHGLVAVGG----ADSKISIVEN--GA-KVSSLPIDYE 174 (248)
Q Consensus 125 --------~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~----~~~~i~~~~~--~~-~~~~~~~~~~ 174 (248)
+.+|++.... ....+.++|++++++... ....++++|. +. ....+.....
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 4556553211 124577899999876543 2358899983 21 3334433333
Q ss_pred CceEEEcCCCCEEEEEc-C---CCcEEEEEcCCCCC--CCcccccCCcCeEEEEEcCCCcEEEEEcC-CC--eEEEEECC
Q psy16005 175 PSSISLDHEHGLVAVGG-A---DSKVHIYELNNKSL--SPKAELDHLGPVTDCSFSPSNEYLVASDA-HR--KVVLYRVP 245 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~-~---d~~v~i~d~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~vw~~~ 245 (248)
...-.++++|..|+..+ . .+.|..+|+.++.. ...+. .|...+. .|++++++|+.... ++ .|++|++.
T Consensus 282 ~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 282 ADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 22223677777655444 3 35799999987654 12222 4555554 89999998877654 33 68888876
Q ss_pred C
Q psy16005 246 D 246 (248)
Q Consensus 246 ~ 246 (248)
.
T Consensus 359 g 359 (693)
T 3iuj_A 359 G 359 (693)
T ss_dssp S
T ss_pred C
Confidence 4
No 234
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=9.7e-10 Score=91.20 Aligned_cols=196 Identities=11% Similarity=0.025 Sum_probs=131.4
Q ss_pred CcEEEEEecCCCceeeeeecCCcc--------------------------------eEEEEECcCCcEEEEEccCC----
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCA--------------------------------VNVAKYSPSGFYIASGDISG---- 80 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~--------------------------------v~~~~~s~~~~~l~~~~~dg---- 80 (248)
++.|+.+|..+++.+-.+...... ...++++|++..++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 589999999999987655432111 12567888888888887664
Q ss_pred ---------------eEEEEECCCCceeeeeeccCCC-------CCeeEEEEecCC---CEEEEEeCCc----------E
Q psy16005 81 ---------------KVRIWDTVNKEHILKNEFHPIG-------GPIKDIAWSPDN---QRMISIVENG----------A 125 (248)
Q Consensus 81 ---------------~i~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~~l~~~~~~~----------~ 125 (248)
.|..+|.++++....+....|. ....-+....+| +.++.++.++ .
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 5999999999987766654442 122222333355 4455555444 3
Q ss_pred EEEEccCCCCC------------------------------------ceeEeCCCCCEEEEEcC----------------
Q psy16005 126 KVSSLPIDYEP------------------------------------SSISLDHEHGLVAVGGA---------------- 153 (248)
Q Consensus 126 ~i~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~---------------- 153 (248)
.+|..+..... ..++++|++.++++...
T Consensus 349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~ 428 (677)
T 1kb0_A 349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ 428 (677)
T ss_dssp EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence 44444322100 14677888888776532
Q ss_pred ---------------------------CCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC
Q psy16005 154 ---------------------------DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 154 ---------------------------~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
.+.|..|| +++.+...+.........+..++..+++++.||.+++||.+++
T Consensus 429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 26788899 6788888877666666677778888999999999999999999
Q ss_pred CCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 205 SLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
+.+..+..++...-.-+.|.++|+.++.
T Consensus 509 ~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 509 EKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9877766555433445667788875543
No 235
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.27 E-value=1.3e-08 Score=76.95 Aligned_cols=224 Identities=11% Similarity=-0.013 Sum_probs=135.8
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeec--------------------CCcceEEEEECc-CCcEEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTE--------------------HSCAVNVAKYSP-SGFYIAS 75 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~--------------------~~~~v~~~~~s~-~~~~l~~ 75 (248)
..+.+++|+++|++++++. ++.|..|+..+++... +.. ....+..+++.+ +++ |+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 3466799999998666665 8899999877654332 210 113478899998 665 444
Q ss_pred EccCCeEEEEECCCCceeeee-eccC-CCCCeeEEEEec-CCCEEEEEeC------------------CcEEEEEccC--
Q psy16005 76 GDISGKVRIWDTVNKEHILKN-EFHP-IGGPIKDIAWSP-DNQRMISIVE------------------NGAKVSSLPI-- 132 (248)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~-~~~~-~~~~v~~~~~~~-~~~~l~~~~~------------------~~~~i~~~~~-- 132 (248)
+...+.|..+|..++...... ...+ .......+++.+ +|+..++... .++..++...
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 544456888887755421111 1111 113468899999 8976666432 1233344321
Q ss_pred -------CCCCceeEeCCCCCEEEE-EcCCCeEEEEECCc----eeeee-cccCCCceEEEcCCCCEEEEEcC-------
Q psy16005 133 -------DYEPSSISLDHEHGLVAV-GGADSKISIVENGA----KVSSL-PIDYEPSSISLDHEHGLVAVGGA------- 192 (248)
Q Consensus 133 -------~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~----~~~~~-~~~~~~~~~~~s~~~~~l~~~~~------- 192 (248)
-..+..++++++++.+.+ -...+.|..++... ....+ .... +..++++++|++.++...
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 134678899999985554 46678899988321 11111 1223 788999999986665543
Q ss_pred ---CCcEEEEEcCCCCCCCcccccC---CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 193 ---DSKVHIYELNNKSLSPKAELDH---LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 193 ---d~~v~i~d~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.+.|..+|.. ++....+.... ...++.+++ .+++.+++....+.|..+++..
T Consensus 256 ~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4668888864 44333332221 234677776 4666666666788999998754
No 236
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.24 E-value=8.9e-08 Score=71.81 Aligned_cols=220 Identities=11% Similarity=0.007 Sum_probs=128.5
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC--CeEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS--GKVR 83 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~ 83 (248)
+++..++.. .....++|+|+|+++++-. ++.|..+|.+. +....+ ........+++.++++++++.... ..|.
T Consensus 23 ~~~~~~p~~--~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 23 KIITSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEECTT--CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred eEeEeCCCC--CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 445555542 5678999999998666653 78999999765 333333 234568899999999866554332 2477
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC--------------------CCCceeEeC
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID--------------------YEPSSISLD 142 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~--------------------~~~~~~~~~ 142 (248)
.+|..+++........ .......++..+++..+++....+ +..++.... ..+..+ +
T Consensus 99 ~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEECTTSCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEcCCCCeEEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 7777777643222222 122334455444443333332222 233332110 012233 6
Q ss_pred CCCCE-EEEEcCCCeEEEEECC---ce--eeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC--cccccC
Q psy16005 143 HEHGL-VAVGGADSKISIVENG---AK--VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP--KAELDH 214 (248)
Q Consensus 143 ~~~~~-~~~~~~~~~i~~~~~~---~~--~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~~~~ 214 (248)
++++. +++....+.|..++.. +. ...+.....+..++++++|+++++....+.|.++|.. ++... ... ..
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-~~ 253 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QG 253 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GT
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-cc
Confidence 66654 4555567889998832 21 1112112457889999999877666667889999975 44321 122 12
Q ss_pred CcCeEEEEEc---CCCcEEEEEcC
Q psy16005 215 LGPVTDCSFS---PSNEYLVASDA 235 (248)
Q Consensus 215 ~~~v~~~~~s---~~~~~l~~~~~ 235 (248)
...+++++|. |+++.|+.++.
T Consensus 254 ~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 254 VIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred cCCceEEEEecccCCCCEEEEECC
Confidence 3568999999 89877766543
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.24 E-value=2.1e-09 Score=86.10 Aligned_cols=191 Identities=11% Similarity=0.111 Sum_probs=134.0
Q ss_pred cccccccCCcEEEEe-C-CCCCEEEEeC-------------------CcEEEEEecCCCceeeeeecCCcceEEEEECcC
Q psy16005 11 TLPRTQRGQPIVLGG-D-PKGKNFLYTN-------------------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS 69 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~-s-~~~~~l~~~~-------------------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~ 69 (248)
.+|.. ..+..+++ + |+++++++++ ++.+.+.|.++.+...++.--. ....++++|+
T Consensus 129 ~ip~g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spd 205 (595)
T 1fwx_A 129 EIPNA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYE 205 (595)
T ss_dssp ECSSC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSS
T ss_pred eCCCC--CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCC
Confidence 45543 34778887 5 9999998872 3589999999998887775322 4567889999
Q ss_pred CcEEEEEccCC--------------------------------------eEEEEECCC--CceeeeeeccCCCCCeeEEE
Q psy16005 70 GFYIASGDISG--------------------------------------KVRIWDTVN--KEHILKNEFHPIGGPIKDIA 109 (248)
Q Consensus 70 ~~~l~~~~~dg--------------------------------------~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~ 109 (248)
|+++++.+.+. .|.+.|.++ ++.. ...++. .....++.
T Consensus 206 Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~-~~~Ipv-g~~PhGv~ 283 (595)
T 1fwx_A 206 GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLF-TRYIPI-ANNPHGCN 283 (595)
T ss_dssp SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSS-EEEEEE-ESSCCCEE
T ss_pred CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCcee-EEEEec-CCCceEEE
Confidence 99998887543 366777766 3320 112221 23567899
Q ss_pred EecCCCEEEEEeC--CcEEEEEccC---------------------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--C--
Q psy16005 110 WSPDNQRMISIVE--NGAKVSSLPI---------------------DYEPSSISLDHEHGLVAVGGADSKISIVE--N-- 162 (248)
Q Consensus 110 ~~~~~~~l~~~~~--~~~~i~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~-- 162 (248)
++|||+++++++. +.+.++++.. +..+..++|+++|..+.+..-++.|..|+ .
T Consensus 284 ~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~ 363 (595)
T 1fwx_A 284 MAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAI 363 (595)
T ss_dssp ECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHH
T ss_pred EcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhh
Confidence 9999999999874 4467777652 34678899999996667788899999999 2
Q ss_pred --------CceeeeecccCCC------ceEEEcCCCCEEEEEcC---CCc----------EEEEEcCCCCC
Q psy16005 163 --------GAKVSSLPIDYEP------SSISLDHEHGLVAVGGA---DSK----------VHIYELNNKSL 206 (248)
Q Consensus 163 --------~~~~~~~~~~~~~------~~~~~s~~~~~l~~~~~---d~~----------v~i~d~~~~~~ 206 (248)
.+.+..+..+..+ ..+..+|||++|++++. |.. -.++|+..++.
T Consensus 364 ~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 364 RAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp HHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred hhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 3456666666665 33456899999998864 332 28899966554
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.22 E-value=1.7e-09 Score=89.92 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=129.3
Q ss_pred EEEeCCCCCEEEEeC-Cc-------------------EEEEEecCCCceeeeeec--CC-------cceEEEEECcCCc-
Q psy16005 22 VLGGDPKGKNFLYTN-GN-------------------SVIIRNIENPAISDIYTE--HS-------CAVNVAKYSPSGF- 71 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-~~-------------------~v~v~~~~~~~~~~~~~~--~~-------~~v~~~~~s~~~~- 71 (248)
.++++|++..++.+. ++ .|..+|..+++..-.++. |. .+........+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 578889888888876 44 399999999998876653 21 1222222223564
Q ss_pred --EEEEEccCCeEEEEECCCCceeeeeeccCCC-------------------------------------CCeeEEEEec
Q psy16005 72 --YIASGDISGKVRIWDTVNKEHILKNEFHPIG-------------------------------------GPIKDIAWSP 112 (248)
Q Consensus 72 --~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------------------------------~~v~~~~~~~ 112 (248)
.++.++.+|.++++|.++++.+....+.... ..-..++|+|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 7889999999999999999876433322100 0011267777
Q ss_pred CCCEEEEEeCCcE-EEEEccCCCCCceeEeCCCCCEEEEE------------------cCCCeEEEEE--CCceeeeecc
Q psy16005 113 DNQRMISIVENGA-KVSSLPIDYEPSSISLDHEHGLVAVG------------------GADSKISIVE--NGAKVSSLPI 171 (248)
Q Consensus 113 ~~~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~i~~~~--~~~~~~~~~~ 171 (248)
+...+++...+.. .++..... . .+.+....+..+ ..++.|..|| +++.+...+.
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~-~----~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~ 473 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEA-P----KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY 473 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSC-C----CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEeccccceeeeecccc-c----cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC
Confidence 7777776654433 22222211 0 000000000000 0147899999 6788888777
Q ss_pred cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 172 DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 172 ~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
......-.+...+.++++|+.||.++.||.++++.+-....++...-.-+.|..+|+.+++
T Consensus 474 ~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 474 VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 6655555666778899999999999999999999876665444333344677888875443
No 239
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.21 E-value=6.3e-08 Score=70.08 Aligned_cols=188 Identities=9% Similarity=0.130 Sum_probs=128.8
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeec-CCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTE-HSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
.++. -...+..++|+|++..|++.. ++.|...|.. ++..+.+.. -......+++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g-~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAG-ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTT-CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCC-cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4444 335799999999887777653 7789999987 777776642 2246788999999887777667789999987
Q ss_pred CCCce---eeeeec----cCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------------------CCCCcee
Q psy16005 88 VNKEH---ILKNEF----HPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI--------------------DYEPSSI 139 (248)
Q Consensus 88 ~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~--------------------~~~~~~~ 139 (248)
..... .....+ ...+.....++|+|+++.|+++.+.. ..+|.++. -..+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65442 111211 12355678999999998777776543 45665531 1234677
Q ss_pred EeCCCC-CEEEEEcCCCeEEEEE-CCceeeeecccC----------CCceEEEcCCCCEEEEEcCCCcEEEEEc
Q psy16005 140 SLDHEH-GLVAVGGADSKISIVE-NGAKVSSLPIDY----------EPSSISLDHEHGLVAVGGADSKVHIYEL 201 (248)
Q Consensus 140 ~~~~~~-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~----------~~~~~~~s~~~~~l~~~~~d~~v~i~d~ 201 (248)
+++|.. ++++....++.+..+| .++.+..+.+.. .+..++++++|+..++ ++-+.++.|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 888765 4566667778888899 666666665442 4578999999985444 66677777654
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.20 E-value=6.6e-09 Score=74.87 Aligned_cols=190 Identities=11% Similarity=0.065 Sum_probs=116.0
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-Cc--EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEE-ccCCeE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GN--SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-DISGKV 82 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~--~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i 82 (248)
+++..+|.....-...+.|+ ++.++.+++ +| .|+++|+++++....+... .........++++.|+.. -.++.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 35556654444445788898 665444444 43 8999999999998877543 333333233344455444 468899
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.++|..+.+.+......+ ....+++|++.|+.+ ..++.|.++|
T Consensus 110 ~v~D~~t~~~~~ti~~~~-----eG~glt~dg~~L~~S-------------------------------dGs~~i~~iDp 153 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG-----EGWGLTHNDQYLIMS-------------------------------DGTPVLRFLDP 153 (262)
T ss_dssp EEEETTTCCEEEEEECSS-----CCCCEEECSSCEEEC-------------------------------CSSSEEEEECT
T ss_pred EEEECccCcEEEEEECCC-----CceEEecCCCEEEEE-------------------------------CCCCeEEEEcC
Confidence 999999988765444432 112333555555442 2245566666
Q ss_pred -CCceeeeeccc------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-----------CCcCeEEEEE
Q psy16005 162 -NGAKVSSLPID------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-----------HLGPVTDCSF 223 (248)
Q Consensus 162 -~~~~~~~~~~~------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-----------~~~~v~~~~~ 223 (248)
+.+.+..++.. ..++.+.+. +|+..+..-.++.|.+.|.++++....+... .....+.++|
T Consensus 154 ~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~ 232 (262)
T 3nol_A 154 ESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAW 232 (262)
T ss_dssp TTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEE
T ss_pred CCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEE
Confidence 33444444432 123446665 6765555556789999999998865443321 1245689999
Q ss_pred cCCCcEEEEEcC
Q psy16005 224 SPSNEYLVASDA 235 (248)
Q Consensus 224 s~~~~~l~~~~~ 235 (248)
+|+++.|+..+.
T Consensus 233 dp~~~~lfVTGK 244 (262)
T 3nol_A 233 DKEHHRLFVTGK 244 (262)
T ss_dssp ETTTTEEEEEET
T ss_pred cCCCCEEEEECC
Confidence 999887766654
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.18 E-value=4.3e-08 Score=75.61 Aligned_cols=212 Identities=9% Similarity=0.012 Sum_probs=122.6
Q ss_pred CCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCC---C
Q psy16005 28 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG---P 104 (248)
Q Consensus 28 ~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~ 104 (248)
++..++...++.|+.+|..+++................. .+..++.++.++.|..+|..+++.+.......... .
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 344444445899999999999887665433222111222 24467888889999999999998765544322110 0
Q ss_pred eeEEEEecCCCEEEEEeC----------CcEEEEEccCCCCCc--------eeEeCC--CCCEEEEEcCCCeEEEEE--C
Q psy16005 105 IKDIAWSPDNQRMISIVE----------NGAKVSSLPIDYEPS--------SISLDH--EHGLVAVGGADSKISIVE--N 162 (248)
Q Consensus 105 v~~~~~~~~~~~l~~~~~----------~~~~i~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~i~~~~--~ 162 (248)
....... + ..++++.. ++..+|......... .+...| .+..+.+++.++.+..+| +
T Consensus 181 ~~~~~~~-~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t 258 (376)
T 3q7m_A 181 ESAPTTA-F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258 (376)
T ss_dssp CCCCEEE-T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred CCCcEEE-C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence 0111111 2 23333332 334455544322110 011111 245677778889999999 5
Q ss_pred CceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 163 GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
++.+....... ...+.. ++..+++++.++.|..+|..+++..-.........+..... .+..|+.++.+|.+..+
T Consensus 259 G~~~w~~~~~~-~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 259 GQIMWKRELGS-VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp CCEEEEECCCC-EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred CcEEeeccCCC-CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEE
Confidence 66666554322 223333 46678888889999999999988643332111122223333 24678888889999999
Q ss_pred ECCCCC
Q psy16005 243 RVPDFE 248 (248)
Q Consensus 243 ~~~~~~ 248 (248)
|..+++
T Consensus 334 d~~tG~ 339 (376)
T 3q7m_A 334 NVEDGR 339 (376)
T ss_dssp ETTTCC
T ss_pred ECCCCc
Confidence 998875
No 242
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.15 E-value=6.5e-08 Score=74.63 Aligned_cols=208 Identities=15% Similarity=0.142 Sum_probs=123.4
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecC---------CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEH---------SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
+..+++++ ++.|+.+|..+++..-..... ...+.+. ...++..++.++.++.|..+|..+++.......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 44555554 889999999999887655432 1222221 122455778888899999999999987655554
Q ss_pred cCCCCCeeEEEEecCCCEEEEEe----------CCcEEEEEccCCCCCc------eeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIV----------ENGAKVSSLPIDYEPS------SISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.... ....... ++ .+++++ .++..+|......... .... .+..++++..++.+..+|
T Consensus 132 ~~~~--~~~p~~~-~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 132 AGEA--LSRPVVS-DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp SSCC--CSCCEEE-TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEET
T ss_pred CCce--EcCCEEE-CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEEC
Confidence 3211 1111111 22 333333 2344555554433221 1112 145677788899999999
Q ss_pred -CCceeeeecccCCCc--------eEEEcC--CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEE
Q psy16005 162 -NGAKVSSLPIDYEPS--------SISLDH--EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 162 -~~~~~~~~~~~~~~~--------~~~~s~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 230 (248)
+++.+.......... .+...| .+..+++++.++.+..+|.++++..-... ......+.. ++..+
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---~~~~~~~~~--~~~~l 280 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE---LGSVNDFIV--DGNRI 280 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC---CCCEEEEEE--ETTEE
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc---CCCCCCceE--ECCEE
Confidence 567766655332100 011112 34577888889999999999988653332 223344444 35677
Q ss_pred EEEcCCCeEEEEECCCCC
Q psy16005 231 VASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 231 ~~~~~d~~i~vw~~~~~~ 248 (248)
+.++.++.+..+|..+++
T Consensus 281 ~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 281 YLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp EEEETTCCEEEEETTTCC
T ss_pred EEEcCCCeEEEEECCCCc
Confidence 778888999999998875
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.15 E-value=1.5e-08 Score=73.10 Aligned_cols=187 Identities=9% Similarity=0.002 Sum_probs=113.7
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceE--EEEECcCCcEEEEEccCCeEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVN--VAKYSPSGFYIASGDISGKVR 83 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~~~~~dg~i~ 83 (248)
+++..+|.....-...+.|+. +.++.+.+ ++.|+++|+++++..+.+ .. .... .+++..+ ++.+..-.++.+.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEE
Confidence 455666554445557888873 34444444 778999999999988877 32 3333 3555432 3344445688999
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-- 161 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 161 (248)
++|..+.+.+......+. -..++ +|++.|+.+ ..++.|.++|
T Consensus 120 V~D~~Tl~~~~ti~~~~e---GwGLt--~Dg~~L~vS-------------------------------dGs~~l~~iDp~ 163 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGE---GWGLC--YWNGKLVRS-------------------------------DGGTMLTFHEPD 163 (268)
T ss_dssp EEETTTTEEEEEEECSSC---CCCEE--EETTEEEEE-------------------------------CSSSEEEEECTT
T ss_pred EEECCcCcEEEEEeCCCc---eeEEe--cCCCEEEEE-------------------------------CCCCEEEEEcCC
Confidence 999999887654444321 12333 455554443 3355666666
Q ss_pred CCceeeeecccC------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc------------CCcCeEEEEE
Q psy16005 162 NGAKVSSLPIDY------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD------------HLGPVTDCSF 223 (248)
Q Consensus 162 ~~~~~~~~~~~~------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~------------~~~~v~~~~~ 223 (248)
+.+.+..+.... .++.+.|. +|+..+..-.++.|.+.|.++++.+..+... .....+.++|
T Consensus 164 T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~ 242 (268)
T 3nok_A 164 GFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAV 242 (268)
T ss_dssp TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEE
T ss_pred CCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEE
Confidence 344444444322 23456666 6765555556789999999999865443321 2246789999
Q ss_pred cCCCcEEEEEc
Q psy16005 224 SPSNEYLVASD 234 (248)
Q Consensus 224 s~~~~~l~~~~ 234 (248)
+|+++.|+..+
T Consensus 243 dp~~~rlfVTG 253 (268)
T 3nok_A 243 EPGSGRIFMTG 253 (268)
T ss_dssp CTTTCCEEEEE
T ss_pred cCCCCEEEEeC
Confidence 99876665554
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.12 E-value=2e-08 Score=75.85 Aligned_cols=207 Identities=7% Similarity=0.009 Sum_probs=132.4
Q ss_pred CCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeE
Q psy16005 28 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD 107 (248)
Q Consensus 28 ~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 107 (248)
++..++.+.++.+..+|.. ++...........+.++...+++. ++.++.++.|..+|.. ++....... ....+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~--~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT--NDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC--SSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec--CCCceee
Confidence 4444444448899999988 776665555555566677777776 6667788999999998 665433333 2445667
Q ss_pred EEEecCCCEEEEEeCCcEEEEE--------ccCC-CCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecccCC-Cc
Q psy16005 108 IAWSPDNQRMISIVENGAKVSS--------LPID-YEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPIDYE-PS 176 (248)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~i~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~-~~ 176 (248)
+...+++...+.. +++..++ .... ..+.++...+++.+++ ++.++.+..++ .++.+..+..... +.
T Consensus 182 ~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~g~~~~~~~~~~~~~~ 258 (330)
T 3hxj_A 182 ASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINPDGTEKWRFKTGKRIES 258 (330)
T ss_dssp CEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECTTSCEEEEEECSSCCCS
T ss_pred eEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECCCCCEeEEeeCCCCccc
Confidence 7777777655444 5555444 3322 3356677777776544 56677888888 4555555544333 34
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 177 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.+...+++ .|.+++.+|.|..+|. +++...... .....+.++...++|+ |..++.+|.+++...+.
T Consensus 259 ~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 259 SPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp CCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred cceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE-cCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 56666666 4667777888999996 555433332 2344567777777876 56678899999887643
No 245
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.09 E-value=1.2e-06 Score=66.85 Aligned_cols=222 Identities=8% Similarity=-0.040 Sum_probs=135.3
Q ss_pred cEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCceeeeeec
Q psy16005 20 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
..|.+..+ ..+|+.+....|+..++........+.. ...+..++|++....|+ +-...+.|..+++...... ...
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~--~~~ 111 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE--EVV 111 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEE
T ss_pred Cccccccc-CceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce--EEE
Confidence 45666666 4566667767788888876555444433 34578999998555554 5456789999998876532 122
Q ss_pred cCCCCCeeEEEEecCCCEEEEEeCC--cEEEEEccC----------CCCCceeEeCCCCC-EEEEEcCC-CeEEEEE-CC
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIVEN--GAKVSSLPI----------DYEPSSISLDHEHG-LVAVGGAD-SKISIVE-NG 163 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~~--~~~i~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~-~~i~~~~-~~ 163 (248)
.........+++++.+..|+.+... .+.+.+++. -..+..++++|.+. ++.+-... +.|..++ .+
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 2222456789999877666666533 344444332 13467788888555 44444444 7788887 44
Q ss_pred ceeeeec--ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 164 AKVSSLP--IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 164 ~~~~~~~--~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
.....+. .-..++.++++|++..|..+. ..+.|..+|+...... .+..........+++. .+..+++-...+.|.
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~~P~giav~-~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQGLPHPFAITVF-EDSLYWTDWHTKSIN 269 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-EEEeCCCCCceEEEEE-CCEEEEecCCCCeEE
Confidence 4333332 223478999998777666654 4678999998754332 2221233456778883 444455555667888
Q ss_pred EEECCCC
Q psy16005 241 LYRVPDF 247 (248)
Q Consensus 241 vw~~~~~ 247 (248)
.++..+|
T Consensus 270 ~~~~~~G 276 (349)
T 3v64_C 270 SANKFTG 276 (349)
T ss_dssp EEETTTC
T ss_pred EEEccCC
Confidence 8775444
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.09 E-value=6.1e-08 Score=70.57 Aligned_cols=164 Identities=9% Similarity=-0.004 Sum_probs=108.0
Q ss_pred ceeeeeecCCc--ceEEEEECcCCcEEEEEcc--CCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc
Q psy16005 49 AISDIYTEHSC--AVNVAKYSPSGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG 124 (248)
Q Consensus 49 ~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 124 (248)
+.+.++ .|.. ....+.|+|++.+.++.+. ++.|.++|+.+++.+....+..+ .....+++. ++.|+
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~ly------ 79 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLY------ 79 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEE------
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEE------
Confidence 344455 3443 3579999998755555443 57999999999987654444322 112233333 33333
Q ss_pred EEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcC
Q psy16005 125 AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELN 202 (248)
Q Consensus 125 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~ 202 (248)
++.-.++.+.++| +.+.+.+++.. ......+++||+.++++..++.|.++|..
T Consensus 80 ------------------------v~t~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~ 134 (266)
T 2iwa_A 80 ------------------------QVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPH 134 (266)
T ss_dssp ------------------------EEETTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTT
T ss_pred ------------------------EEEecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECC
Confidence 3345667888888 45666666655 34456677788878887788999999999
Q ss_pred CCCCCCcccccC----CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 203 NKSLSPKAELDH----LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 203 ~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+.+.......+. -..++.+.|. +|+.++....++.|.+.|..+++
T Consensus 135 t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 135 TFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC
T ss_pred CCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc
Confidence 988765554331 1246788888 77655555567899999998875
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.07 E-value=2.1e-08 Score=81.59 Aligned_cols=216 Identities=9% Similarity=-0.014 Sum_probs=127.1
Q ss_pred CCEEEEe-CCcEEEEEecCCCceeeeeecCC--c--ceEE-EEECcCCcEEEEEcc------CCeEEEEECCCCceeeee
Q psy16005 29 GKNFLYT-NGNSVIIRNIENPAISDIYTEHS--C--AVNV-AKYSPSGFYIASGDI------SGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 29 ~~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~--~--~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~ 96 (248)
+..++++ .++.+..+|..+++..-...... . .+.+ .... ++ .+++++. ++.|..+|.++++.+.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 3455555 48999999999998876554211 0 1111 1111 44 4555554 799999999999876554
Q ss_pred eccCCC-----------------------------------C-CeeEEEEecCCCEEEEEe-------------------
Q psy16005 97 EFHPIG-----------------------------------G-PIKDIAWSPDNQRMISIV------------------- 121 (248)
Q Consensus 97 ~~~~~~-----------------------------------~-~v~~~~~~~~~~~l~~~~------------------- 121 (248)
...... . ....++++++...++.+.
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432210 0 001244555444444332
Q ss_pred -------CCcEEEEEccCCC----------CCceeEeCCCCC---EEEEEcCCCeEEEEE--CCceeeeecccCCC----
Q psy16005 122 -------ENGAKVSSLPIDY----------EPSSISLDHEHG---LVAVGGADSKISIVE--NGAKVSSLPIDYEP---- 175 (248)
Q Consensus 122 -------~~~~~i~~~~~~~----------~~~~~~~~~~~~---~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~---- 175 (248)
+.+..+|..+... .+.-+....+++ .++.++.+|.++.+| +++.+...+....+
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 2344567665421 111112223563 567788899999999 67766655432100
Q ss_pred ------------------------------------ceEEEcCCCCEEEEEc----------------------------
Q psy16005 176 ------------------------------------SSISLDHEHGLVAVGG---------------------------- 191 (248)
Q Consensus 176 ------------------------------------~~~~~s~~~~~l~~~~---------------------------- 191 (248)
..++++|+...+++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 2467888877776653
Q ss_pred ---------CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 192 ---------ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 192 ---------~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+|.|..||+.+++..-+... ...+....+...+..++.++.|+.++.+|.++||
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 347899999999887544432 2222222233345677778999999999999886
No 248
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=99.07 E-value=4.3e-08 Score=82.45 Aligned_cols=100 Identities=7% Similarity=-0.063 Sum_probs=68.3
Q ss_pred CcEEEEeC-CCCCEEEEeC--C----cEEEEEecCCC-ceee-eeecCCcceEEEEECcCCcEEEEEccC-----CeEEE
Q psy16005 19 QPIVLGGD-PKGKNFLYTN--G----NSVIIRNIENP-AISD-IYTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRI 84 (248)
Q Consensus 19 ~v~~~~~s-~~~~~l~~~~--~----~~v~v~~~~~~-~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i 84 (248)
.+...+|| |||++|+.+. + ..|+++|+.++ +.+. .+. .....++|+||++.|+....+ ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 56788999 9999999763 2 25999999988 6322 121 123468899999888776654 36888
Q ss_pred EECCCCceeeeeecc-CCCCCeeEEEEecCCCEEEEEe
Q psy16005 85 WDTVNKEHILKNEFH-PIGGPIKDIAWSPDNQRMISIV 121 (248)
Q Consensus 85 wd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 121 (248)
+++.+++......+. ........+.|+|||++|+...
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence 888776422112221 2223456789999999988776
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.07 E-value=2.6e-07 Score=66.07 Aligned_cols=190 Identities=11% Similarity=0.006 Sum_probs=115.0
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-C--cEEEEEecCCCceeeeeecCCcc-eEEEEECcCCcEEEEEccCCeE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-G--NSVIIRNIENPAISDIYTEHSCA-VNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~--~~v~v~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i 82 (248)
+++...|.....-...+.|++ +.++.+.+ . ..|+.+|+.+++..+.+...... -..+++. .++.....-.++.+
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEE
Confidence 466677665556677899986 44444443 2 59999999999998877543221 1233443 23444445578999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.++|..+.+.+......+ .-..+ .++++.|+.+ ..++.|.++|
T Consensus 88 ~v~D~~tl~~~~ti~~~~---~Gwgl--t~dg~~L~vS-------------------------------dgs~~l~~iDp 131 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPG---EGWAL--TSDDSHLYMS-------------------------------DGTAVIRKLDP 131 (243)
T ss_dssp EEEETTTTEEEEEEECSS---CCCEE--EECSSCEEEE-------------------------------CSSSEEEEECT
T ss_pred EEEECCcCcEEEEEeCCC---CceEE--eeCCCEEEEE-------------------------------CCCCeEEEEeC
Confidence 999999988765444432 12333 3455544432 2345666666
Q ss_pred -CCceeeeecccC------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc------------CCcCeEEEE
Q psy16005 162 -NGAKVSSLPIDY------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD------------HLGPVTDCS 222 (248)
Q Consensus 162 -~~~~~~~~~~~~------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~------------~~~~v~~~~ 222 (248)
+.+.+..++... .++.+.+. +|+..+..-.+..|.+.|.++++.+...... .....+.++
T Consensus 132 ~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA 210 (243)
T 3mbr_X 132 DTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIA 210 (243)
T ss_dssp TTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEE
T ss_pred CCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEE
Confidence 334444444321 23445554 6665555556778999999998865433211 224578999
Q ss_pred EcCCCcEEEEEcC
Q psy16005 223 FSPSNEYLVASDA 235 (248)
Q Consensus 223 ~s~~~~~l~~~~~ 235 (248)
++|+++.|+..+.
T Consensus 211 ~d~~~~~lfVTGK 223 (243)
T 3mbr_X 211 FDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEEET
T ss_pred EcCCCCEEEEECC
Confidence 9998776665553
No 250
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.06 E-value=1.5e-06 Score=67.26 Aligned_cols=220 Identities=7% Similarity=-0.036 Sum_probs=133.6
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHP 100 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~ 100 (248)
|.+..+ ..+|+.+....|+..++........... ......++|++.+..| ++-...+.|..+++...... ..+..
T Consensus 81 C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~--~~~~~ 156 (386)
T 3v65_B 81 CKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE--EVVST 156 (386)
T ss_dssp EEECSS-CCEEEEECBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE--EEECS
T ss_pred ECCccc-cceeEeecCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE--EEEeC
Confidence 444445 4466666767888888876655544433 3457899999755444 55556789999998876532 12222
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEEccC------------CCCCceeEeCCCCCEEE-EEcCC-CeEEEEE-CCce
Q psy16005 101 IGGPIKDIAWSPDNQRMISIVENGAKVSSLPI------------DYEPSSISLDHEHGLVA-VGGAD-SKISIVE-NGAK 165 (248)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~-~~i~~~~-~~~~ 165 (248)
.......+++++.+..|+.+....-.|+.+.. -..+..++++|.+..+. +-... +.|..++ .+..
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 22356778999877777666543323333221 13456788887655444 43344 6788777 4433
Q ss_pred eeeec--ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 166 VSSLP--IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 166 ~~~~~--~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
...+. .-..++.++++|++..|+.+. ..+.|..+|+..... ..+..........+++ ..+..+++-...+.|..+
T Consensus 237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEE
Confidence 33332 223478999998777666654 567899999875433 2222223345678888 344555555667888888
Q ss_pred ECCCC
Q psy16005 243 RVPDF 247 (248)
Q Consensus 243 ~~~~~ 247 (248)
+..+|
T Consensus 315 ~~~~G 319 (386)
T 3v65_B 315 NKFTG 319 (386)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 85444
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.04 E-value=1.3e-07 Score=71.45 Aligned_cols=183 Identities=12% Similarity=0.084 Sum_probs=114.6
Q ss_pred ceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccC------------------CCCCeeEEEEec-CCCEEEEE
Q psy16005 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP------------------IGGPIKDIAWSP-DNQRMISI 120 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------~~~~v~~~~~~~-~~~~l~~~ 120 (248)
...+++|++++++++++..++.|..||..+++... ..... ....+..+++++ +++.+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 35678899999878888889999999987654321 11100 013578899997 66655554
Q ss_pred eCCcEEEEEccCC--------------CCCceeEeCC-CCCEEEEEcC-----------------CCeEEEEECC-ceee
Q psy16005 121 VENGAKVSSLPID--------------YEPSSISLDH-EHGLVAVGGA-----------------DSKISIVENG-AKVS 167 (248)
Q Consensus 121 ~~~~~~i~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~-----------------~~~i~~~~~~-~~~~ 167 (248)
...++..++.... ..+..+++.+ +++++++... ++.|..+|.. ....
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 4555555543211 1346688899 8887776533 3678888842 2222
Q ss_pred e-ecccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCC-cccccCCcCeEEEEEcCCCcEEEEEcC---------
Q psy16005 168 S-LPIDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSP-KAELDHLGPVTDCSFSPSNEYLVASDA--------- 235 (248)
Q Consensus 168 ~-~~~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~--------- 235 (248)
. ......++.++++|+++.|+++ ..++.|..|++.....-. .......+ ...+++.++|+++++...
T Consensus 179 ~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~ 257 (322)
T 2fp8_A 179 LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGR 257 (322)
T ss_dssp EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSC
T ss_pred EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCC
Confidence 2 2223457889999999966665 556889999987542211 11111223 788999999986666543
Q ss_pred -CCeEEEEEC
Q psy16005 236 -HRKVVLYRV 244 (248)
Q Consensus 236 -d~~i~vw~~ 244 (248)
.+.|..+|.
T Consensus 258 ~~~~v~~~d~ 267 (322)
T 2fp8_A 258 VDPKGIKFDE 267 (322)
T ss_dssp EEEEEEEECT
T ss_pred CccEEEEECC
Confidence 345666654
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=4.2e-08 Score=81.35 Aligned_cols=218 Identities=12% Similarity=0.076 Sum_probs=130.3
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecCCc-ceEEEEECc--CCcEEEEEcc------CCeEEEEECCCCceeeeeec
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEHSC-AVNVAKYSP--SGFYIASGDI------SGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 98 (248)
+..++++. ++.|+.+|..+|+.+-.+..... ....+.-+| .+..++++.. +|.|..+|.++++.+.....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 34555554 99999999999998766643210 001111122 1334555543 58999999999997765543
Q ss_pred cCCC-----------------------------CCeeEEEEecCCCEEEEEeCCc-------------------------
Q psy16005 99 HPIG-----------------------------GPIKDIAWSPDNQRMISIVENG------------------------- 124 (248)
Q Consensus 99 ~~~~-----------------------------~~v~~~~~~~~~~~l~~~~~~~------------------------- 124 (248)
.... .....++++|+...++.+..++
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 2110 0112467888777776665433
Q ss_pred ----EEEEEccCCC----------CCceeEeCCCCC---EEEEEcCCCeEEEEE--CCceeeeecccC------------
Q psy16005 125 ----AKVSSLPIDY----------EPSSISLDHEHG---LVAVGGADSKISIVE--NGAKVSSLPIDY------------ 173 (248)
Q Consensus 125 ----~~i~~~~~~~----------~~~~~~~~~~~~---~~~~~~~~~~i~~~~--~~~~~~~~~~~~------------ 173 (248)
..+|..+... .+....+..+++ .++.++.+|.++++| +++.+...+...
T Consensus 277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g 356 (668)
T 1kv9_A 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (668)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence 2345544321 111111222454 688889999999999 677663322110
Q ss_pred -------------------------CCceEEEcCCCCEEEEEc------------------------------------C
Q psy16005 174 -------------------------EPSSISLDHEHGLVAVGG------------------------------------A 192 (248)
Q Consensus 174 -------------------------~~~~~~~s~~~~~l~~~~------------------------------------~ 192 (248)
.-..++++|+...+++.. .
T Consensus 357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~ 436 (668)
T 1kv9_A 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (668)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence 012367888777665421 2
Q ss_pred CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 193 DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 193 d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|.|..||+.+++..-+.. ...+.....+...+.+++.++.|+.++.||.++|+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~--~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp EEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEeCCCCcEEEEcc--CCCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 3789999999998754433 22233333445567888899999999999999885
No 253
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.02 E-value=9.6e-07 Score=67.52 Aligned_cols=213 Identities=13% Similarity=0.161 Sum_probs=123.3
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCcee--eeee---cCCcceEEEEECcC---CcEEEEEcc-C-----CeEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS--DIYT---EHSCAVNVAKYSPS---GFYIASGDI-S-----GKVR 83 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~--~~~~---~~~~~v~~~~~s~~---~~~l~~~~~-d-----g~i~ 83 (248)
..+..++|.|+|+++++-.++.|++++ .++.. ..+. ........++++|+ +..|+.+.. . +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 457899999999977776689999988 34321 1111 12346789999998 555554433 2 5788
Q ss_pred EEECCCCce----eeeeecc---CCCCCeeEEEEecCCCEEEEEeCCc------------EEEEEccCCC----------
Q psy16005 84 IWDTVNKEH----ILKNEFH---PIGGPIKDIAWSPDNQRMISIVENG------------AKVSSLPIDY---------- 134 (248)
Q Consensus 84 iwd~~~~~~----~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~------------~~i~~~~~~~---------- 134 (248)
.++...+.. .....++ ........++|.|||...++.++.+ -+|+.+..+.
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 888764321 1111122 1112346899999997666544321 2566654332
Q ss_pred --------------CCceeEeCC-CCCEEEEEcCCCe--------EEEEECCc------------------eeeeecccC
Q psy16005 135 --------------EPSSISLDH-EHGLVAVGGADSK--------ISIVENGA------------------KVSSLPIDY 173 (248)
Q Consensus 135 --------------~~~~~~~~~-~~~~~~~~~~~~~--------i~~~~~~~------------------~~~~~~~~~ 173 (248)
.+..++++| ++.++++-..... |.....+. ....+....
T Consensus 189 ~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 268 (352)
T 2ism_A 189 RRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGF 268 (352)
T ss_dssp CTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCC
Confidence 256778888 6666665433332 44444222 111222223
Q ss_pred CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC------CCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 174 EPSSISLDHEHGLVAVGGADSKVHIYELNNKSL------SPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 174 ~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
.+..+++ .+|.++++....+.|...+++.... ...+. .....+..+++.|||..+++..
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEEEe
Confidence 4556777 4666666666677788888765432 11121 2235789999999998776653
No 254
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.99 E-value=2.3e-06 Score=65.48 Aligned_cols=217 Identities=12% Similarity=0.112 Sum_probs=126.1
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc-eeeeee---cCCcceEEEEECcC---CcEEEEEcc----C----Ce
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA-ISDIYT---EHSCAVNVAKYSPS---GFYIASGDI----S----GK 81 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~-~~~~~~---~~~~~v~~~~~s~~---~~~l~~~~~----d----g~ 81 (248)
...+..++|.|+|+++++-.++.|++++ .+++ .+..+. ........++++|+ +..|+.+.. + ..
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3567899999999977776689999887 4444 111111 12345789999997 444544332 3 56
Q ss_pred EEEEECCCC--c----eeeeeeccC-CCCCeeEEEEecCCCEEEEEeCCc------------EEEEEccCCC--------
Q psy16005 82 VRIWDTVNK--E----HILKNEFHP-IGGPIKDIAWSPDNQRMISIVENG------------AKVSSLPIDY-------- 134 (248)
Q Consensus 82 i~iwd~~~~--~----~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~------------~~i~~~~~~~-------- 134 (248)
|..|+.... . ......+.. .......++|.|||...++.++.+ -+|+.+..+.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777776654 1 111111221 112346799999998666654321 1566654332
Q ss_pred -----------CCceeEeCC-CCCEEEEEcCCC---eEEEEECCc------------------eeeee-cccCCCceEEE
Q psy16005 135 -----------EPSSISLDH-EHGLVAVGGADS---KISIVENGA------------------KVSSL-PIDYEPSSISL 180 (248)
Q Consensus 135 -----------~~~~~~~~~-~~~~~~~~~~~~---~i~~~~~~~------------------~~~~~-~~~~~~~~~~~ 180 (248)
.+..++++| +++++++-.... .|.+...+. .+..+ .....+..+++
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~ 266 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASF 266 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEE
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEE
Confidence 356788888 666666543322 244433222 11122 12334567777
Q ss_pred c-------CCCCEEEEEcCCCcEEEEEcCCC-CCC--CcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 181 D-------HEHGLVAVGGADSKVHIYELNNK-SLS--PKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 181 s-------~~~~~l~~~~~d~~v~i~d~~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
. .+|.++++....+.|...++... +.. ..+..+....+..+++.|||.++++..
T Consensus 267 y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 267 VHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 3 56777777666778988888753 221 122212245789999999998666654
No 255
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.96 E-value=3.9e-06 Score=63.19 Aligned_cols=214 Identities=12% Similarity=0.011 Sum_probs=130.4
Q ss_pred CEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCC---ceeeeeeccCCCCCe
Q psy16005 30 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNK---EHILKNEFHPIGGPI 105 (248)
Q Consensus 30 ~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v 105 (248)
.+|+.+....|+..++.+.+....+. ......+++|++++..| ++-...+.|..+++... ... ...+...-..+
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~-~~~~~~~~~~p 79 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTVISRDIQAP 79 (316)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C-EEEECSSCSCC
T ss_pred CEEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc-EEEEeCCCCCc
Confidence 35777777789999998876655553 34567899999865544 55556789999998761 111 11222222456
Q ss_pred eEEEEecCCCEEEEEeC--CcEEEEEccC----------CCCCceeEeCCCCCEEEEEc-CC-CeEEEEE-CCceeeeec
Q psy16005 106 KDIAWSPDNQRMISIVE--NGAKVSSLPI----------DYEPSSISLDHEHGLVAVGG-AD-SKISIVE-NGAKVSSLP 170 (248)
Q Consensus 106 ~~~~~~~~~~~l~~~~~--~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~-~~~~~~~~~ 170 (248)
..+++++.+..|+.+.. +.+.+.++.. ...+..++++|.+..+.... .. +.|...+ .+.....+.
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence 78999886666665543 2344444321 23567788888655444433 33 6788887 444443332
Q ss_pred --ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccc--cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 171 --IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAEL--DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 171 --~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.-..++.++++|++..|+.+. ..+.|..+|+..... ..+.. ........+++. .+..+++-...+.|..++..
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 234578999999877666554 567899999975433 22211 122346778885 35555555667889888876
Q ss_pred CC
Q psy16005 246 DF 247 (248)
Q Consensus 246 ~~ 247 (248)
++
T Consensus 238 ~g 239 (316)
T 1ijq_A 238 TG 239 (316)
T ss_dssp TC
T ss_pred CC
Confidence 55
No 256
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.96 E-value=3.7e-06 Score=71.36 Aligned_cols=223 Identities=11% Similarity=0.098 Sum_probs=142.8
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee-------cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-------EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
..|.++...++|.+.+...+ .|.+|+..+++...... .....|.++...++|. |..|+.++-|..++..++
T Consensus 263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp SBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGG
T ss_pred CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcc
Confidence 56899999999987776655 68889977665443221 1235799999998887 555667777888887655
Q ss_pred ceeeeeecc----CCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC------------------CCCCceeEeCCCCCEE
Q psy16005 91 EHILKNEFH----PIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI------------------DYEPSSISLDHEHGLV 148 (248)
Q Consensus 91 ~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~------------------~~~~~~~~~~~~~~~~ 148 (248)
......... -....|.++..+++|+..+....+|+..++... ...+.++...++++.+
T Consensus 341 ~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~l 420 (795)
T 4a2l_A 341 RFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLV 420 (795)
T ss_dssp SSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEE
T ss_pred cceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEE
Confidence 422111100 123568999998888766655555777666431 1234566667788756
Q ss_pred EEEcCCCeEEEEECC-ceeeeecc------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc-----cCCc
Q psy16005 149 AVGGADSKISIVENG-AKVSSLPI------DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-----DHLG 216 (248)
Q Consensus 149 ~~~~~~~~i~~~~~~-~~~~~~~~------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----~~~~ 216 (248)
.+|+.++-|..++.. .....+.. ...+.++..+++|.+.+.. .+ -+.+||..+++....... -...
T Consensus 421 Wigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (795)
T 4a2l_A 421 YIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSK 498 (795)
T ss_dssp EEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred EEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCc
Confidence 667777779999832 33333332 2346788888888755544 34 488999887654221110 1235
Q ss_pred CeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 217 PVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 217 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.|.++...++|+..+... +-+..|+..+
T Consensus 499 ~i~~i~~d~~g~lWigt~--~Gl~~~~~~~ 526 (795)
T 4a2l_A 499 QITTLFRDSHKRLWIGGE--EGLSVFKQEG 526 (795)
T ss_dssp CEEEEEECTTCCEEEEES--SCEEEEEEET
T ss_pred eEEEEEECCCCCEEEEeC--CceEEEeCCC
Confidence 789999999998666554 4577777643
No 257
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.95 E-value=8.1e-06 Score=69.27 Aligned_cols=222 Identities=9% Similarity=0.020 Sum_probs=142.0
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeec--------CCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE--------HSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
...|.++...++|++.+...++-|..|+..+++....... ....|.++...++++.|..|+.++-+..+|..
T Consensus 356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~ 435 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN 435 (795)
T ss_dssp CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence 3468999999999887766677889999877654432211 23578999988888856667777779999988
Q ss_pred CCceeeeeecc--CCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC----------------CCCceeEeCCCCCEEEE
Q psy16005 89 NKEHILKNEFH--PIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID----------------YEPSSISLDHEHGLVAV 150 (248)
Q Consensus 89 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~----------------~~~~~~~~~~~~~~~~~ 150 (248)
+++........ .....|.++...++|+..+... +|+.+++.... ..+.++..++++++.+.
T Consensus 436 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 436 SGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp TCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred CCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 77632111100 1245789999888887666554 78777764321 23456677778876665
Q ss_pred EcCCCeEEEEEC-Cceeeeec--------ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc-cc-CCcCeE
Q psy16005 151 GGADSKISIVEN-GAKVSSLP--------IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE-LD-HLGPVT 219 (248)
Q Consensus 151 ~~~~~~i~~~~~-~~~~~~~~--------~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~-~~~~v~ 219 (248)
.. +.+..|+. .... .+. ....+.++..+++|.+.+... . -+..||..+++...... .+ ....|.
T Consensus 515 t~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~ 589 (795)
T 4a2l_A 515 GE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVVY 589 (795)
T ss_dssp ES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCEE
T ss_pred eC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhheE
Confidence 44 45777772 2222 221 123467888888888555443 4 58889987765422111 11 234688
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++...++|.+.+++. +-|..|+.++
T Consensus 590 ~i~~d~~g~lWi~t~--~Gl~~~~~~~ 614 (795)
T 4a2l_A 590 GILEDSFGRLWLSTN--RGISCFNPET 614 (795)
T ss_dssp EEEECTTSCEEEEET--TEEEEEETTT
T ss_pred EEEECCCCCEEEEcC--CceEEEcCCC
Confidence 999999998766663 4456666544
No 258
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.94 E-value=3.6e-06 Score=64.30 Aligned_cols=187 Identities=9% Similarity=0.056 Sum_probs=118.3
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
..+..++|++.+..|+.+. .+.|+.++++.......+.........+++.+. +++.++-...+.|.+.++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~- 151 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK- 151 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-
Confidence 3478899998777777764 788999998766544433332344578889874 455556566789999998765422
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC------------CCCceeEeCCCCC-EEEEEcCCCeEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID------------YEPSSISLDHEHG-LVAVGGADSKISIV 160 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 160 (248)
..+...-.....++++|.+..|+.+.... -+|+.+..+ ..+..+++++++. ++++-...+.|..+
T Consensus 152 -~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 152 -VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp -EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred -EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 22222335678999999877777776544 444443221 2356788997555 45555567788888
Q ss_pred E-CCceeeee-c-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 161 E-NGAKVSSL-P-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 161 ~-~~~~~~~~-~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
+ .+.....+ . ....+..+++. .+.++++-...+.|..++..+++..
T Consensus 231 ~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 231 NLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred eCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCcc
Confidence 8 44333322 1 12346777773 4445555556778888886555543
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.91 E-value=4.4e-07 Score=65.44 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=105.2
Q ss_pred eeeeeecCCc--ceEEEEECcCCcEEEEEccCC--eEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE
Q psy16005 50 ISDIYTEHSC--AVNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA 125 (248)
Q Consensus 50 ~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 125 (248)
.++++ .|.. ....+.|+ ++.++.+.+.+| .|+++|+++++.+....+. .........++++.|+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---~~~FgeGit~~g~~ly------- 100 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---KRYFGEGISDWKDKIV------- 100 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---TTCCEEEEEEETTEEE-------
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---CccceeEEEEeCCEEE-------
Confidence 34445 3433 35788998 677667777766 8999999999876544443 2233322333343332
Q ss_pred EEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 126 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 126 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
...-.++.+.++| +.+.+.+++...... .+++|++.|+.+..++.|.++|..+
T Consensus 101 -----------------------~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~--glt~dg~~L~~SdGs~~i~~iDp~T 155 (262)
T 3nol_A 101 -----------------------GLTWKNGLGFVWNIRNLRQVRSFNYDGEGW--GLTHNDQYLIMSDGTPVLRFLDPES 155 (262)
T ss_dssp -----------------------EEESSSSEEEEEETTTCCEEEEEECSSCCC--CEEECSSCEEECCSSSEEEEECTTT
T ss_pred -----------------------EEEeeCCEEEEEECccCcEEEEEECCCCce--EEecCCCEEEEECCCCeEEEEcCCC
Confidence 2344577888888 566777777654433 4446778777777788899999999
Q ss_pred CCCCCccccc-CC---cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 204 KSLSPKAELD-HL---GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 204 ~~~~~~~~~~-~~---~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+........ .. ..++.+.|. +|+..+..-.++.|.+.|.++++
T Consensus 156 ~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 156 LTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK 203 (262)
T ss_dssp CSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB
T ss_pred CeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCc
Confidence 8876554432 11 335668886 77766656567899999998875
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.90 E-value=2.9e-07 Score=75.07 Aligned_cols=213 Identities=12% Similarity=0.064 Sum_probs=123.7
Q ss_pred EEEe-CCcEEEEEecCCCceeeeeecCCc----ceEE-EEECcCCcEEEEEc------cCCeEEEEECCCCceeeeeecc
Q psy16005 32 FLYT-NGNSVIIRNIENPAISDIYTEHSC----AVNV-AKYSPSGFYIASGD------ISGKVRIWDTVNKEHILKNEFH 99 (248)
Q Consensus 32 l~~~-~~~~v~v~~~~~~~~~~~~~~~~~----~v~~-~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 99 (248)
++++ .++.++.+|..+|+.+-....... .+.+ ... .++ .+++++ .+|.|+.+|.++++.+......
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 5555 489999999999998765542210 1111 111 144 455554 3799999999999877554432
Q ss_pred CCC-----------------------------------CCe-eEEEEecCCCEEEEEeCC--------------------
Q psy16005 100 PIG-----------------------------------GPI-KDIAWSPDNQRMISIVEN-------------------- 123 (248)
Q Consensus 100 ~~~-----------------------------------~~v-~~~~~~~~~~~l~~~~~~-------------------- 123 (248)
... ..+ ..++++++...++.+..+
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 211 000 134455555555554432
Q ss_pred ------cEEEEEccCCCC----------CceeEeC-CCC---CEEEEEcCCCeEEEEE--CCceeeeecccC--------
Q psy16005 124 ------GAKVSSLPIDYE----------PSSISLD-HEH---GLVAVGGADSKISIVE--NGAKVSSLPIDY-------- 173 (248)
Q Consensus 124 ------~~~i~~~~~~~~----------~~~~~~~-~~~---~~~~~~~~~~~i~~~~--~~~~~~~~~~~~-------- 173 (248)
|..+|..+.... +.-+... .++ ..++.++.+|.++.+| +++.+...+...
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~ 361 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence 334565543221 1112222 456 4677788999999999 677665543211
Q ss_pred --------------------------------CCceEEEcCCCCEEEEEc------------------------------
Q psy16005 174 --------------------------------EPSSISLDHEHGLVAVGG------------------------------ 191 (248)
Q Consensus 174 --------------------------------~~~~~~~s~~~~~l~~~~------------------------------ 191 (248)
.-..++++|+..++++..
T Consensus 362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 441 (599)
T 1w6s_A 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG 441 (599)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccC
Confidence 013467787766655431
Q ss_pred ---------CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 192 ---------ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 192 ---------~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..|.|.-||+.+++.+-....+ .+...-...-.+..++.++.|+.++.||.++||
T Consensus 442 p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 442 PKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp TTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 3467888899888765433222 112111122246677778999999999999986
No 261
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.89 E-value=1.2e-07 Score=78.71 Aligned_cols=225 Identities=11% Similarity=0.076 Sum_probs=128.1
Q ss_pred EEEeCC-CCCEEEEeC-C-----------cEEEEEecCCCceeee--ee-cCCcceEEEEECcCCcEEEEEcc-CCeEEE
Q psy16005 22 VLGGDP-KGKNFLYTN-G-----------NSVIIRNIENPAISDI--YT-EHSCAVNVAKYSPSGFYIASGDI-SGKVRI 84 (248)
Q Consensus 22 ~~~~s~-~~~~l~~~~-~-----------~~v~v~~~~~~~~~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i 84 (248)
++++.| +++.++.|+ + ..+.+||..+++.... +. .+.....++++.++++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566667 888888764 1 1688999988764332 21 12333445778889999999884 458999
Q ss_pred EECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-C------cEEEEEccCCCCCc--------------eeEeCC
Q psy16005 85 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-N------GAKVSSLPIDYEPS--------------SISLDH 143 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~------~~~i~~~~~~~~~~--------------~~~~~~ 143 (248)
||..+++......+... ..-.+++..++++.++.++. + .+.+|+........ ...+..
T Consensus 270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 99988764432223221 22234566678998888873 2 35667764321100 011224
Q ss_pred CCCEEEEEcCCC---------eEEEEECCcee--eeecc-c---------CCCceEEEc-CCCCEEEEEcCCC-------
Q psy16005 144 EHGLVAVGGADS---------KISIVENGAKV--SSLPI-D---------YEPSSISLD-HEHGLVAVGGADS------- 194 (248)
Q Consensus 144 ~~~~~~~~~~~~---------~i~~~~~~~~~--~~~~~-~---------~~~~~~~~s-~~~~~l~~~~~d~------- 194 (248)
++..++.++.++ .+..||..... ..... . ..-.++.+. .+++++++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 556666665554 45567732211 11111 1 112333343 3778888887532
Q ss_pred ----cEEEEEcCCCCCCCcc--cccCCcCeEEEEEcCCCcEEEEEcCC-----------CeEEEEECCCC
Q psy16005 195 ----KVHIYELNNKSLSPKA--ELDHLGPVTDCSFSPSNEYLVASDAH-----------RKVVLYRVPDF 247 (248)
Q Consensus 195 ----~v~i~d~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~i~vw~~~~~ 247 (248)
.|.+||..+.+-.... .......-.++...|+++.++.|+.+ ..+.+||..+.
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 5778887765532211 11111122445667899999998754 46888987653
No 262
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=2.2e-06 Score=67.39 Aligned_cols=224 Identities=9% Similarity=0.030 Sum_probs=127.6
Q ss_pred CCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC-C----eEEEEECCCC
Q psy16005 18 GQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS-G----KVRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g----~i~iwd~~~~ 90 (248)
..+..++++| ++..|+++. .+.|+.+|+.++...... ........++|+++++.|+.+... + .+...+. .+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 4677899998 455666664 488999998876654443 344567899999999966665542 2 3444443 33
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeC--CcEEEEEcc-----------CCCCCceeEeCCCCC-EEEEEcCCCe
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLP-----------IDYEPSSISLDHEHG-LVAVGGADSK 156 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (248)
.......+.. ......++++|++..|+.+.. +.+..++.. ....+..++++|+++ ++++....+.
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 2221112221 234677889994444544442 233444432 123477899999999 5556667788
Q ss_pred EEEEE-CC---ce--eeeecc----------------cCCCc-eEEEc--------CCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 157 ISIVE-NG---AK--VSSLPI----------------DYEPS-SISLD--------HEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 157 i~~~~-~~---~~--~~~~~~----------------~~~~~-~~~~s--------~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
|..++ .+ .. ...+.. -..+. .++.. ++|.+.++=..++.|+.++. .++
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~ 372 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGR 372 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSE
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCc
Confidence 88876 21 11 111110 01123 44543 34555555555677888873 333
Q ss_pred CCCcccc------c----------CCcCeEEEEEcCC-CcEEEEEcCCCeEEEEECC
Q psy16005 206 LSPKAEL------D----------HLGPVTDCSFSPS-NEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 206 ~~~~~~~------~----------~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~ 245 (248)
....... + .-.....++++|+ +.++++-...+.|+.++++
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2111100 0 1125789999995 5555555567889888764
No 263
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.89 E-value=3.9e-10 Score=86.92 Aligned_cols=139 Identities=13% Similarity=0.146 Sum_probs=74.4
Q ss_pred CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEE
Q psy16005 69 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLV 148 (248)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 148 (248)
++..+++++.||.|..||..+++.+..... +.+.+..+.. ++..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~-------------------------------~g~~~ 52 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHV-------------------------------EEPAF 52 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC------------------------------------CCE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEc-------------------------------CCCEE
Confidence 567899999999999999999987654443 2222222222 23345
Q ss_pred EEEcCCCeEEEEE--CCceeeeecccCC--C-ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 149 AVGGADSKISIVE--NGAKVSSLPIDYE--P-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 149 ~~~~~~~~i~~~~--~~~~~~~~~~~~~--~-~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
++++.|+.++.|| +++.+........ + ....+. ++..+++++.++.|+.||.++++....... +. ...+
T Consensus 53 v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~ 126 (369)
T 2hz6_A 53 LPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSL 126 (369)
T ss_dssp EECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------
T ss_pred EEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccc
Confidence 5567788888888 4665554433211 1 111111 345677888899999999999988655432 21 2356
Q ss_pred cCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 224 SPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 224 s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|++..+++++.|+.|+.||.++|+
T Consensus 127 ~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 127 SPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp ------EEEEEEEEEEECCCSSSSS
T ss_pred cccCCEEEEEecCCEEEEEECCCCC
Confidence 7788899999999999999998875
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.89 E-value=2.6e-06 Score=66.00 Aligned_cols=190 Identities=8% Similarity=0.049 Sum_probs=119.4
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
..+..++|++.+..|+.+. .+.|+.++++.......+.........+++.+. +++.++-...+.|.+.++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~- 194 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK- 194 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-
Confidence 4577899998777777664 789999998766544433332334567888875 455555566788999888755422
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC------------CCCceeEeCCCCC-EEEEEcCCCeEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID------------YEPSSISLDHEHG-LVAVGGADSKISIV 160 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 160 (248)
..+...-.....++++|.+..|+.+.... -+|+.+..+ ..+..++++|++. ++++-...+.|..+
T Consensus 195 -~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 195 -VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp -EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred -EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 22222335678999999888777776544 445444322 2356788886554 45555667788888
Q ss_pred E-CCceeeee-c-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc
Q psy16005 161 E-NGAKVSSL-P-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 161 ~-~~~~~~~~-~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 210 (248)
+ .+.....+ . ....+..+++. .+.++++-...+.|..++..+++....+
T Consensus 274 d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 274 NLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp CTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 8 33332222 1 22346778873 4445555566788999986666554333
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.88 E-value=9e-07 Score=63.88 Aligned_cols=160 Identities=10% Similarity=0.054 Sum_probs=106.4
Q ss_pred eeeeeecCC--cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEE
Q psy16005 50 ISDIYTEHS--CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKV 127 (248)
Q Consensus 50 ~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i 127 (248)
.++++ .|. .....+.|+ ++.+..+.+.+|.|+++|+++++.+... +. .........++++.|
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~---~~~FgeGit~~g~~L---------- 108 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL---GNIFAEGLASDGERL---------- 108 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC---TTCCEEEEEECSSCE----------
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC---CCcceeEEEEeCCEE----------
Confidence 34444 343 334788887 4667778888899999999999876544 33 223332223333333
Q ss_pred EEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 128 SSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
+.....++.+.++| +.+.+.+++.......+ ++|++.|+.+..++.|.++|..+.+
T Consensus 109 --------------------y~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~ 166 (268)
T 3nok_A 109 --------------------YQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFA 166 (268)
T ss_dssp --------------------EEEESSSCEEEEEETTTTEEEEEEECSSCCCCE--EEETTEEEEECSSSEEEEECTTTCC
T ss_pred --------------------EEEEccCCEEEEEECCcCcEEEEEeCCCceeEE--ecCCCEEEEECCCCEEEEEcCCCCe
Confidence 33345678888888 56677777765444444 4678888888888999999999988
Q ss_pred CCCccccc-CC---cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 206 LSPKAELD-HL---GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 206 ~~~~~~~~-~~---~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
........ +. ..++.+.|. +|+..+..-.++.|.+.|.++++
T Consensus 167 v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 167 LVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred EEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence 76554432 21 245778887 77656555567899999998875
No 266
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.87 E-value=6.8e-07 Score=74.22 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=54.2
Q ss_pred CCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EE
Q psy16005 154 DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YL 230 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 230 (248)
++.|..|| +++.+...+.........+...+.++++++.|+.++.||.++++.+.....+....-.-+.+..+|+ ++
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yv 516 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV 516 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEE
Confidence 37788899 6777777766655555555666788999999999999999999987655543211112234455776 44
Q ss_pred EEE
Q psy16005 231 VAS 233 (248)
Q Consensus 231 ~~~ 233 (248)
+.+
T Consensus 517 a~~ 519 (668)
T 1kv9_A 517 AIM 519 (668)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.86 E-value=9.2e-07 Score=72.14 Aligned_cols=54 Identities=2% Similarity=-0.031 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 193 DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 193 d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|.|.-||+.+++..-+.... .++..-.....+..++.++.|+.++.||.++||
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 578999999999875443322 122211112246678889999999999999986
No 268
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.85 E-value=1.1e-05 Score=60.81 Aligned_cols=215 Identities=14% Similarity=0.051 Sum_probs=130.6
Q ss_pred CEEEEeCCcEEEEEecCCCc--eeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCee
Q psy16005 30 KNFLYTNGNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106 (248)
Q Consensus 30 ~~l~~~~~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 106 (248)
.+|+.+....|+..+++... ....+. ......+++|++. +.++.+-...+.|..+++..+.... ..+...-....
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~~~l~~p~ 82 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVVSGLLSPD 82 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-EEEEECCSCCC
T ss_pred cEEEEEccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-EEEcCCCCCcc
Confidence 36777778889999998764 222222 2345678999985 4555555667899999987663211 11111224567
Q ss_pred EEEEecCCCEEEEEeCC--cEEEEEccC----------CCCCceeEeCCCCCEEEEEc--CCCeEEEEE-CCceeeeec-
Q psy16005 107 DIAWSPDNQRMISIVEN--GAKVSSLPI----------DYEPSSISLDHEHGLVAVGG--ADSKISIVE-NGAKVSSLP- 170 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~--~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~-~~~~~~~~~- 170 (248)
.+++++.+..|+.+... .+.+.+++. ...+..++++|.+..+.... ..+.|...+ .+.....+.
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~ 162 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN 162 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence 89999866666665432 344554432 23456778887655544444 357788887 444333331
Q ss_pred -ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 171 -IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 171 -~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.-..++.++++|++..|+.+. ..+.|..+|+..... ..+..+.......+++.. +..+.+-...+.|..++..+|+
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 223578999999777666654 567899999875433 222222334567777753 3444455566889888886653
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.85 E-value=1.5e-06 Score=68.38 Aligned_cols=185 Identities=11% Similarity=0.112 Sum_probs=108.4
Q ss_pred cCCcEEEEeCCCCCEEEEeCC----c-EEEEEecCCCce-eeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNG----N-SVIIRNIENPAI-SDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~----~-~v~v~~~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 89 (248)
...+..++++++|+++++... . .+...+...+.. ...+. .-.....++++| ++.+.++-..++.|+.+|..+
T Consensus 181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~ 259 (433)
T 4hw6_A 181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT 259 (433)
T ss_dssp CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT
T ss_pred CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC
Confidence 345889999999994444332 1 233344322211 11221 223456788999 677666666778999999886
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEE--ccCC-----------------------------CCCce
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSS--LPID-----------------------------YEPSS 138 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~--~~~~-----------------------------~~~~~ 138 (248)
+.........+.......++|+|++++|+.+....-+|+. +... ..+..
T Consensus 260 g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~g 339 (433)
T 4hw6_A 260 GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQ 339 (433)
T ss_dssp CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEE
T ss_pred CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCcc
Confidence 6641111111112334579999999988777755434433 3211 11345
Q ss_pred eEe---------CCCCCEEEEEcCCCeEEEEECCceeeeecc-------------------cCCCceEEEc-CCCCEEEE
Q psy16005 139 ISL---------DHEHGLVAVGGADSKISIVENGAKVSSLPI-------------------DYEPSSISLD-HEHGLVAV 189 (248)
Q Consensus 139 ~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------------------~~~~~~~~~s-~~~~~l~~ 189 (248)
+++ .++++++++-.....|+.++..-.+..+.. -..+..++++ ++|.++++
T Consensus 340 iav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 340 GIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp EEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred EEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence 777 677777777777888888883223332221 1125678888 56655555
Q ss_pred EcCCCcEEEEEcC
Q psy16005 190 GGADSKVHIYELN 202 (248)
Q Consensus 190 ~~~d~~v~i~d~~ 202 (248)
=..++.|+.++++
T Consensus 420 D~~n~rIr~i~~e 432 (433)
T 4hw6_A 420 DCDNHRVRKIAPE 432 (433)
T ss_dssp EGGGTEEEEEEEC
T ss_pred eCCCCEEEEEecC
Confidence 5566778887764
No 270
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.85 E-value=5.2e-07 Score=68.05 Aligned_cols=178 Identities=11% Similarity=0.047 Sum_probs=113.4
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.+.++...+++..++...++.+..+|.. ++....+......+.++...+++.+.+ ++ +.+..+| .+++......
T Consensus 138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~- 211 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY- 211 (330)
T ss_dssp CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC-
T ss_pred eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc-
Confidence 3445566778876665567999999988 777666655556677777877777554 44 7899999 6666543333
Q ss_pred cCCCCCeeEEEEecCCCEEEEEeCCcEE--------EEEccCCCC-CceeEeCCCCCEEEEEcCCCeEEEEE-CCceeee
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIVENGAK--------VSSLPIDYE-PSSISLDHEHGLVAVGGADSKISIVE-NGAKVSS 168 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~--------i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~ 168 (248)
.....+.++..+++|...+....+++. +|....... ...+...+++ .+.+++.++.+..+| .++.+..
T Consensus 212 -~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~g~~~~~ 289 (330)
T 3hxj_A 212 -AGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPDGTEKWN 289 (330)
T ss_dssp -CSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTTSCEEEE
T ss_pred -cCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCCCcEEEE
Confidence 234567788888887655554444443 344433322 2344555555 455677788899998 4555555
Q ss_pred eccc-CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 169 LPID-YEPSSISLDHEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 169 ~~~~-~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
+... ..+.++..++++. |.+++.+|.+++...+..+
T Consensus 290 ~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 290 FETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred EEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 5443 3456777777876 5668889999988776543
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.85 E-value=3.2e-06 Score=66.46 Aligned_cols=224 Identities=10% Similarity=0.040 Sum_probs=127.9
Q ss_pred CCcEEEEeCCC--CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---C-eEEEEECCCC
Q psy16005 18 GQPIVLGGDPK--GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---G-KVRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~~--~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g-~i~iwd~~~~ 90 (248)
..+..++|+|+ +..|+.+. .+.|+.++..+++..... ........++++++++++++.... . .+...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 45778999995 44555554 488999998777665544 344568899999999944443311 1 2333333222
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC--------------CCCceeEeCCCCC-EEEEEcCCC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID--------------YEPSSISLDHEHG-LVAVGGADS 155 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~ 155 (248)
. .....+. .-.....++++|++..|+.+....-+++.+... .....++++|+++ ++++-...+
T Consensus 218 ~-~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 218 F-TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp T-CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred e-ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 1 1001111 124456788999444444444322233333221 1223589999998 555556678
Q ss_pred eEEEEEC----Ccee--eeecc----------------cCCCceEEE---------cCCCCEEEEEcCCCcEEEEEcCCC
Q psy16005 156 KISIVEN----GAKV--SSLPI----------------DYEPSSISL---------DHEHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 156 ~i~~~~~----~~~~--~~~~~----------------~~~~~~~~~---------s~~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
.|..++. +... ..+.. -..+..+++ .++|.++++-..++.|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 8888772 2110 11110 113567888 777777776667788999885 33
Q ss_pred CCCCcccc----------------cCCcCeEEEEEc-CCCcEEEEEcCCCeEEEEECC
Q psy16005 205 SLSPKAEL----------------DHLGPVTDCSFS-PSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 205 ~~~~~~~~----------------~~~~~v~~~~~s-~~~~~l~~~~~d~~i~vw~~~ 245 (248)
......-. ..-.....++++ ++|.++++-...+.|+.++++
T Consensus 375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22111000 011347889999 666666665667889988765
No 272
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=2.3e-05 Score=66.35 Aligned_cols=225 Identities=11% Similarity=0.024 Sum_probs=138.3
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee--------------cCCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT--------------EHSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
...|.++...++|.+.+....+-|.+++..+.+...... .....|.++...++|. |..|+.++-|
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl 335 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGI 335 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCE
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeE
Confidence 356889999999887776665678888877654322111 2345799999988876 5566767778
Q ss_pred EEEECCCCceeeeee-------ccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC-------------CCCCceeEeC
Q psy16005 83 RIWDTVNKEHILKNE-------FHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI-------------DYEPSSISLD 142 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~-------------~~~~~~~~~~ 142 (248)
..++...+....... ..-....|.++...++|+..+....+|+..++... ...+.++...
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d 415 (781)
T 3v9f_A 336 NFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKD 415 (781)
T ss_dssp EEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEEC
T ss_pred EEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEEC
Confidence 888877654321110 01123568999988888766655567776666431 1234556666
Q ss_pred CCCCEEEEEcCCCeEEEEECC-ceeeeecc----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc----
Q psy16005 143 HEHGLVAVGGADSKISIVENG-AKVSSLPI----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD---- 213 (248)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---- 213 (248)
+++.+.+ |+.++.+..++.. .....+.. ...+.++...+++.+.+ |+. +-|..||..+++........
T Consensus 416 ~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 416 SEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQL 492 (781)
T ss_dssp TTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSC
T ss_pred CCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCccccc
Confidence 6676555 5666678888842 33333332 24567788888876444 444 45899998876653221111
Q ss_pred CCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 214 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 214 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
....|.++...++|...+.....| +..|+.++
T Consensus 493 ~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~ 524 (781)
T 3v9f_A 493 LENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDM 524 (781)
T ss_dssp SCSCEEEEEECTTCCEEEEESSSC-EEEECTTC
T ss_pred ccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCC
Confidence 145789999999988666544344 66666544
No 273
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.81 E-value=3.9e-06 Score=62.62 Aligned_cols=163 Identities=10% Similarity=0.055 Sum_probs=100.9
Q ss_pred CcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeee-eec----C--CcceEEEEE---CcCCcEEEEEc---------
Q psy16005 19 QPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDI-YTE----H--SCAVNVAKY---SPSGFYIASGD--------- 77 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~-~~~----~--~~~v~~~~~---s~~~~~l~~~~--------- 77 (248)
-..+++|.+....+..++ .+.|..|+...+..... +.+ . ...+..+.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 345789988666666665 89999999875543332 221 1 113679999 68888777543
Q ss_pred ----cCCeEEEEECC---CCceeeeeeccCC-----------CCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCcee
Q psy16005 78 ----ISGKVRIWDTV---NKEHILKNEFHPI-----------GGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSI 139 (248)
Q Consensus 78 ----~dg~i~iwd~~---~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~ 139 (248)
.+..|..+|+. +++.+....+... ......++..++|+..++.+..--.||.
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r---------- 163 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR---------- 163 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE----------
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE----------
Confidence 25779999998 6765544443211 1247788888888877766543112222
Q ss_pred EeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 140 SLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
++|+|+. +..|..... ........+.++++|+|..|++....|.+..+|+.+
T Consensus 164 -V~pdG~~---------~~~~~~~~~--~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 164 -VSADGKT---------VSTFAWESG--NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -ECTTSCC---------EEEEEECCC--CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred -EeCCCCE---------EeeeeecCC--CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2333321 222321110 001123467899999999888887799999999884
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.81 E-value=3.8e-06 Score=60.05 Aligned_cols=161 Identities=11% Similarity=0.083 Sum_probs=104.5
Q ss_pred eeeeeecCC--cceEEEEECcCCcEEEEEccCC--eEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE
Q psy16005 50 ISDIYTEHS--CAVNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA 125 (248)
Q Consensus 50 ~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 125 (248)
.++.+ .|. .....+.|++ +.++.+.+.+| .|+.+|+.+++.+....+.. .........+++.|+
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---~~fgeGi~~~~~~ly------- 78 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP---PYFGAGIVAWRDRLI------- 78 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---TCCEEEEEEETTEEE-------
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---CcceeEEEEeCCEEE-------
Confidence 34445 443 4467899986 55566666654 89999999998765554432 222222233333332
Q ss_pred EEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 126 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 126 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
...-.++.+.++| +.+.+.+++.......+ .+++..|+++..++.|.++|..+
T Consensus 79 -----------------------~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t 133 (243)
T 3mbr_X 79 -----------------------QLTWRNHEGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDT 133 (243)
T ss_dssp -----------------------EEESSSSEEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTT
T ss_pred -----------------------EEEeeCCEEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCC
Confidence 2345677888888 56677777765544444 46677777777788999999999
Q ss_pred CCCCCccccc-CC---cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 204 KSLSPKAELD-HL---GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 204 ~~~~~~~~~~-~~---~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+........ +. ..++.+.|. +|+.++..-.+..|.+.|.++|+
T Consensus 134 ~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 134 LQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB
T ss_pred CeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC
Confidence 8876554432 21 345677776 67755555567899999988875
No 275
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.80 E-value=2.1e-06 Score=69.95 Aligned_cols=80 Identities=13% Similarity=0.048 Sum_probs=52.7
Q ss_pred CCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 154 DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
++.|..+| +++.+...+....+....+...+..+++++.|+.|+.+|.++++.+-.+..+....-.-+.+..+|+.++
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 46788888 6777777766555444333444567788999999999999999987665544322122234567777554
Q ss_pred EE
Q psy16005 232 AS 233 (248)
Q Consensus 232 ~~ 233 (248)
..
T Consensus 523 ~~ 524 (571)
T 2ad6_A 523 GS 524 (571)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.80 E-value=1.7e-05 Score=59.70 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=113.8
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCC----CceeeeeecCCcceEEEEECcCC-cEEEEEccCCeEEEEECCCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 90 (248)
..+..++|++++..|+.+. .+.|+.+++.. ......+...-.....+++.+.+ ++.++-...+.|.+.++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4577999999877777764 68999999875 22222232222345788998744 44455567789999998765
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC------------CCCCceeEeCCCCCEE-EEEcCCCe
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI------------DYEPSSISLDHEHGLV-AVGGADSK 156 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~~ 156 (248)
... ......-.....++++|.+..|+.+..+. -+|+.+.. -..+..+++++++..+ ++-...+.
T Consensus 110 ~~~--~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 110 KRK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp SEE--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred ceE--EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence 422 12222235678999999777776665432 23433221 1345678888765544 45556678
Q ss_pred EEEEE-CCceeeeec----ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 157 ISIVE-NGAKVSSLP----IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 157 i~~~~-~~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
|..++ .+.....+. ....+..+++. .+.++++-...+.|..++..+++.
T Consensus 188 I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 99988 343333332 12346677775 344555556678899998866654
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.80 E-value=2.3e-05 Score=61.03 Aligned_cols=216 Identities=13% Similarity=0.009 Sum_probs=129.3
Q ss_pred CEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCc--eeeeeeccCCCCCee
Q psy16005 30 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKE--HILKNEFHPIGGPIK 106 (248)
Q Consensus 30 ~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~ 106 (248)
.+|+.+....|+..+++.......+ .....+..++|++.+..|+ +-...+.|+.+++.... ......+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 4667777789999998876655444 3445678999998655555 44567889999987522 011122222335678
Q ss_pred EEEEecCCCEEEEEeCCc--EEEEEcc----------CCCCCceeEeCCCCCEEEEEc-C-CCeEEEEE-CCceeeeec-
Q psy16005 107 DIAWSPDNQRMISIVENG--AKVSSLP----------IDYEPSSISLDHEHGLVAVGG-A-DSKISIVE-NGAKVSSLP- 170 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~--~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~-~~~~~~~~~- 170 (248)
.+++++.+..|+.+.... +.+.+++ ....+..++++|.+..+.... . .+.|...+ .+.....+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 899998666666665432 3333332 123467788888655554433 2 36788777 444333332
Q ss_pred -ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 171 -IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 171 -~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.-..++.++++|++..|+.+. ..+.|..+|+........... ........+++. .+..+.+-...+.|..++..+|
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 224578999999877776664 467899999876443222211 122345677773 3344445556678888886555
No 278
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=1.3e-05 Score=67.95 Aligned_cols=223 Identities=13% Similarity=0.022 Sum_probs=137.0
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeee---ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY---TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
...|.++...++|.+.+...++-+..++..++...... ......|.++...+++++.+ |+.++-+..+|..+++..
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence 35688999999888776665667888887654332211 12346789998888777544 666667888998776532
Q ss_pred eeeec-cCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC---------------CCCceeEeCCCCCEEEEEcCCCeE
Q psy16005 94 LKNEF-HPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID---------------YEPSSISLDHEHGLVAVGGADSKI 157 (248)
Q Consensus 94 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~i 157 (248)
. ... ......|.++...++++..+. ..+|+..++.... ..+.++...+++++.+. +.++-+
T Consensus 441 ~-~~~~~~~~~~v~~i~~d~~g~lwig-t~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl 517 (781)
T 3v9f_A 441 I-IELEKNELLDVRVFYEDKNKKIWIG-THAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGV 517 (781)
T ss_dssp E-CCSTTTCCCCEEEEEECTTSEEEEE-ETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCE
T ss_pred E-eccCCCCCCeEEEEEECCCCCEEEE-ECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCE
Confidence 1 111 123467889988887775554 4478777765321 23456667777776654 443446
Q ss_pred EEEEC-Cceeeeecc-----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc-cc-CCcCeEEEEEcCCCcE
Q psy16005 158 SIVEN-GAKVSSLPI-----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE-LD-HLGPVTDCSFSPSNEY 229 (248)
Q Consensus 158 ~~~~~-~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~ 229 (248)
..++. ......+.. ...+.++..+++|.+.+.. .+|.+..||..+++...... .+ ....|.++...++|..
T Consensus 518 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~l 596 (781)
T 3v9f_A 518 GIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNI 596 (781)
T ss_dssp EEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCE
T ss_pred EEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCE
Confidence 67773 333333332 2345778888888755544 46655888887765422111 11 2345788988888886
Q ss_pred EEEEcCCCeEEEEECCC
Q psy16005 230 LVASDAHRKVVLYRVPD 246 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~~ 246 (248)
.+++ ..| |..++..+
T Consensus 597 W~~t-~~G-l~~~~~~~ 611 (781)
T 3v9f_A 597 WAST-NTG-ISCYITSK 611 (781)
T ss_dssp EEEC-SSC-EEEEETTT
T ss_pred EEEc-CCc-eEEEECCC
Confidence 6654 344 55555543
No 279
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.78 E-value=1.5e-05 Score=59.71 Aligned_cols=175 Identities=8% Similarity=0.023 Sum_probs=107.8
Q ss_pred CCcEEEEeCCCCCEEEEeC--C-cEEEEEecCCCceeeeeec-CCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--G-NSVIIRNIENPAISDIYTE-HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~-~~v~v~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+.+..++++++|+++++.. + ..|..++..+++....... .......++..+++..+++-..++.|..+|...++..
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 4578899999999666542 2 2577777777765433221 1223345555666655566556889999998754211
Q ss_pred ee--e------eccCCCCCeeEEEEecCCCEEEEEeCCc--EEEEEccCC------------CCCceeEeCCCCCEEEEE
Q psy16005 94 LK--N------EFHPIGGPIKDIAWSPDNQRMISIVENG--AKVSSLPID------------YEPSSISLDHEHGLVAVG 151 (248)
Q Consensus 94 ~~--~------~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~~~------------~~~~~~~~~~~~~~~~~~ 151 (248)
.. . .....-.....+ +++++.|+.+.... +..+++... ..+..++++++|+++++.
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe
Confidence 10 0 001111234555 88888888776544 455554321 236678889999988887
Q ss_pred cCCCeEEEEE-CCceee--eeccc-CCCceEEEc---CCCCEEEEEcCCC
Q psy16005 152 GADSKISIVE-NGAKVS--SLPID-YEPSSISLD---HEHGLVAVGGADS 194 (248)
Q Consensus 152 ~~~~~i~~~~-~~~~~~--~~~~~-~~~~~~~~s---~~~~~l~~~~~d~ 194 (248)
...+.|..++ .++... .+... ..+.+++|. |+++.|++++..+
T Consensus 230 ~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 230 HIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp BTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 7888999999 444322 23333 457899998 8887777665443
No 280
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.77 E-value=5.7e-06 Score=62.24 Aligned_cols=188 Identities=15% Similarity=0.284 Sum_probs=111.8
Q ss_pred EEEeCCC---CCEEEEe-CCcEEEEEecCCCceeeeeecCCcceEEEEECcC----Cc---EEEEEc-c--CCeEEEEEC
Q psy16005 22 VLGGDPK---GKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS----GF---YIASGD-I--SGKVRIWDT 87 (248)
Q Consensus 22 ~~~~s~~---~~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~---~l~~~~-~--dg~i~iwd~ 87 (248)
++-.+|. ...++.. ..+.+.+||+ +++.++.+.. +.++.+..-|+ |+ ++++.. . +++|.+|++
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 4555564 2333333 3789999999 7888877753 55677766662 32 223333 3 578999977
Q ss_pred C--CCceeeeeeccC------CC-CCeeEEEE--ecC-CCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCC
Q psy16005 88 V--NKEHILKNEFHP------IG-GPIKDIAW--SPD-NQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 88 ~--~~~~~~~~~~~~------~~-~~v~~~~~--~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
. ++. + ..+.. .. ..+..+++ +|. +++ ++++...++
T Consensus 107 Dp~~~~-l--~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~------------------------------yafV~~k~G 153 (355)
T 3amr_A 107 DGKNGT-L--QSMTDPDHPIATAINEVYGFTLYHSQKTGKY------------------------------YAMVTGKEG 153 (355)
T ss_dssp CTTTCC-E--EECSCTTSCEECCCSSCCCEEEEECTTTCCE------------------------------EEEEECSSS
T ss_pred CCCCCc-e--eeccccccCcCCCCCCeeEEEEEecCCCCcE------------------------------EEEEECCCC
Confidence 4 333 2 11110 11 34555555 443 221 223333444
Q ss_pred eEEEEE---------CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC-----CCCCCcccccC-CcCeEE
Q psy16005 156 KISIVE---------NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN-----KSLSPKAELDH-LGPVTD 220 (248)
Q Consensus 156 ~i~~~~---------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~~~-~~~v~~ 220 (248)
.+..|+ ..+.++++.....+..++.++....|+++-++.-|..|+.+. ++.+.....++ ...+..
T Consensus 154 ~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEG 233 (355)
T 3amr_A 154 EFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEG 233 (355)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEE
T ss_pred eEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcce
Confidence 444443 224567777778888999999888999999987777777552 22222221122 346888
Q ss_pred EEE--cCCCc-EEEEEc-CCCeEEEEECC
Q psy16005 221 CSF--SPSNE-YLVASD-AHRKVVLYRVP 245 (248)
Q Consensus 221 ~~~--s~~~~-~l~~~~-~d~~i~vw~~~ 245 (248)
|++ .++++ +|++++ .++...+||.+
T Consensus 234 Lai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 234 LTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 888 55665 666665 56799999985
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.77 E-value=2.5e-05 Score=60.80 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=116.9
Q ss_pred cCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCC----ceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENP----AISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 89 (248)
...+..++|++.+..|+.+. .+.|+.+++... .....+.........+++.+ .+++.++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 35678999999877777764 688998888652 22333333345678899987 455555666778999999876
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC---cEEEEEccC----------CCCCceeEeCCCCCEEE-EEcCCC
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN---GAKVSSLPI----------DYEPSSISLDHEHGLVA-VGGADS 155 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---~~~i~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~ 155 (248)
.... ..+...-.....++++|.+..|+.+... .+...+++. -..+..+++++++..|. +-...+
T Consensus 191 ~~~~--~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 191 VKRK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp CSEE--EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CceE--EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 5432 2222223457899999977777766532 233333321 13467788987665544 445667
Q ss_pred eEEEEE-CCceeeeecc----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc
Q psy16005 156 KISIVE-NGAKVSSLPI----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK 209 (248)
Q Consensus 156 ~i~~~~-~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 209 (248)
.|..++ .+.....+.. -..+..+++. .+.++.+-...+.|..+|..+++....
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~ 326 (400)
T 3p5b_L 269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL 326 (400)
T ss_dssp EEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred EEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEE
Confidence 888888 4433333321 1334566663 233455555677899999777765433
No 282
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.75 E-value=6e-06 Score=67.39 Aligned_cols=78 Identities=12% Similarity=0.026 Sum_probs=51.5
Q ss_pred CCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 154 DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
++.|..|| +++.+.+.+.......-.....+.++++|+.|+.++.||.++++.+-+...+....-.-+.|..+|+..+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 57788888 6777777665544433222334667888999999999999999987666543222222356677887443
No 283
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=1.9e-05 Score=62.57 Aligned_cols=227 Identities=10% Similarity=0.006 Sum_probs=132.3
Q ss_pred CCcEEEEeCC-CCCEEEEeC--CcEEEEEecCCCceeeeeecC---CcceEEEEE-------CcCCcEEEEEccCC----
Q psy16005 18 GQPIVLGGDP-KGKNFLYTN--GNSVIIRNIENPAISDIYTEH---SCAVNVAKY-------SPSGFYIASGDISG---- 80 (248)
Q Consensus 18 ~~v~~~~~s~-~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~---~~~v~~~~~-------s~~~~~l~~~~~dg---- 80 (248)
.....|+|+| ++..|+.+. .+.|++.|+.++......... ......++| +++++.|+++...+
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 3577899999 455566554 467888998877665544321 235889999 99998676665543
Q ss_pred ---eEEEEECCC-Cceee-e--eeccCCCCCeeEEEEecCCCEEEEEe-CCc-EEEEEcc-------C------------
Q psy16005 81 ---KVRIWDTVN-KEHIL-K--NEFHPIGGPIKDIAWSPDNQRMISIV-ENG-AKVSSLP-------I------------ 132 (248)
Q Consensus 81 ---~i~iwd~~~-~~~~~-~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~-~~i~~~~-------~------------ 132 (248)
.|.+.+... +.... . ..+... .....++++|++..|+++. .++ +..+++. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366666443 22110 0 111111 2346788999766666655 333 4455544 1
Q ss_pred -----------CCCCceeEeCCCCCE-EEEEcCCCeEEEEE--CC-cee---eeeccc----------------CCCc-e
Q psy16005 133 -----------DYEPSSISLDHEHGL-VAVGGADSKISIVE--NG-AKV---SSLPID----------------YEPS-S 177 (248)
Q Consensus 133 -----------~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~--~~-~~~---~~~~~~----------------~~~~-~ 177 (248)
...+..++++|+++. +++-.....|+.++ .. ..+ ..+... ..+. .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 123467899999994 55556677888865 21 111 111100 1233 4
Q ss_pred EEEc-------CCCCEEEEEcCCCcEEEEEcCCCCCCCcccc------------c----------CCcCeEEEEEcCC-C
Q psy16005 178 ISLD-------HEHGLVAVGGADSKVHIYELNNKSLSPKAEL------------D----------HLGPVTDCSFSPS-N 227 (248)
Q Consensus 178 ~~~s-------~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------------~----------~~~~v~~~~~s~~-~ 227 (248)
++.. +++.++++=..+..|+.++. ++......-. + .-.....|+++++ |
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 4554 45666666566788999984 3322111000 0 1134788999997 6
Q ss_pred cEEEEEcCCCeEEEEECCC
Q psy16005 228 EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~ 246 (248)
.++++=.....|+.++++.
T Consensus 457 ~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp EEEEEETTTTEEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCC
Confidence 6666656678999998754
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=1.2e-06 Score=68.75 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=95.8
Q ss_pred ceEEEEECc-CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCce
Q psy16005 60 AVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSS 138 (248)
Q Consensus 60 ~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~ 138 (248)
....++++| ++..|+.+...+.|+.+|+..+.... +.........++|++++++|+++...+-
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~---~~~~~~~P~~ia~d~~G~~lyvad~~~~------------- 201 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST---VYSGLSKVRTICWTHEADSMIITNDQNN------------- 201 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE---EECCCSCEEEEEECTTSSEEEEEECCSC-------------
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE---EecCCCCcceEEEeCCCCEEEEEeCCCC-------------
Confidence 346889998 45566666655889999988765321 1223456788999999986666553210
Q ss_pred eEeCCCCCEEEEEcCCCeEEEEE-CCcee--eeecccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcccccC
Q psy16005 139 ISLDHEHGLVAVGGADSKISIVE-NGAKV--SSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDH 214 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~--~~~~~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 214 (248)
.....+..++ .+... ..+.....+..++++| ++.++++-..++.|..++..++........+.
T Consensus 202 -------------~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~ 268 (430)
T 3tc9_A 202 -------------NDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD 268 (430)
T ss_dssp -------------TTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred -------------cccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC
Confidence 0000111111 11110 1222234578899999 67766666677899999998765422222222
Q ss_pred CcCeEEEEEcCCCcEEEEE-cCCCeEEEEECC
Q psy16005 215 LGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVP 245 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~~ 245 (248)
......++|+|+|++|+.+ ...+.|..++.+
T Consensus 269 ~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 269 SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 3457899999999966555 567889887754
No 285
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.74 E-value=2e-05 Score=57.00 Aligned_cols=189 Identities=10% Similarity=0.071 Sum_probs=114.7
Q ss_pred eecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEcc
Q psy16005 54 YTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLP 131 (248)
Q Consensus 54 ~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~ 131 (248)
+.+-...+..++|+|+++.| ++...++.|...|.. ++.+....+.+ ......+++.+++.++++.-.+ .+.++.+.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 44555679999999976544 557778899999998 66554444443 2567889999888765543222 22332221
Q ss_pred -------------------CCCCCceeEeCCCCCEEEEEcCCCe--EEEEEC---Cceeeeec--------ccCCCceEE
Q psy16005 132 -------------------IDYEPSSISLDHEHGLVAVGGADSK--ISIVEN---GAKVSSLP--------IDYEPSSIS 179 (248)
Q Consensus 132 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~---~~~~~~~~--------~~~~~~~~~ 179 (248)
.......++++|.++.|.++.+... |+.|+. ...+..+. .-..+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 1122368899998876666665444 444551 11112111 123468899
Q ss_pred EcCCC-CEEEEEcCCCcEEEEEcCCCCCCCcccccC--------CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 180 LDHEH-GLVAVGGADSKVHIYELNNKSLSPKAELDH--------LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 180 ~s~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++|.. .+++.......+..+|.... ......... -.....++|.|+|+ |+..++.+.++.+.-..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC--
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEecC
Confidence 99954 46666667788888987644 322222111 12568899999998 55556777777776543
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.73 E-value=3.2e-06 Score=70.16 Aligned_cols=217 Identities=9% Similarity=0.018 Sum_probs=119.7
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCc-ceEEEEECcCCcEEEEEc-cC-----CeEEEEE
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSC-AVNVAKYSPSGFYIASGD-IS-----GKVRIWD 86 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~-~d-----g~i~iwd 86 (248)
+.....++++.++|+++++|+ +..+.+||..+.+-...-..+.. .-.+++..+++++++.|+ .+ ..+.+||
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 333344577889999999986 56899999887654332111111 123455667899999988 34 4699999
Q ss_pred CCCCceeee-----eeccCCCCCeeEEEEecCCCEEEEEeCC----------cEEEEEccCCC-----------------
Q psy16005 87 TVNKEHILK-----NEFHPIGGPIKDIAWSPDNQRMISIVEN----------GAKVSSLPIDY----------------- 134 (248)
Q Consensus 87 ~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------~~~i~~~~~~~----------------- 134 (248)
..+++.... ..+..... ...+..+++.++.++.+ .+..|+.....
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~ 397 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD 397 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC
T ss_pred CCCCcceeCCCccccccccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCC
Confidence 987764321 01111000 01122344444444322 23455543222
Q ss_pred --CCceeEe-CCCCCEEEEEcCCC-----------eEEEEECCceeee------ecccCCCceEEEcCCCCEEEEEcCC-
Q psy16005 135 --EPSSISL-DHEHGLVAVGGADS-----------KISIVENGAKVSS------LPIDYEPSSISLDHEHGLVAVGGAD- 193 (248)
Q Consensus 135 --~~~~~~~-~~~~~~~~~~~~~~-----------~i~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~~~~d- 193 (248)
....+.+ ..++++++.|+.++ .+.+||....... ++....-.+.+..|+++++++|+.+
T Consensus 398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~ 477 (656)
T 1k3i_A 398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR 477 (656)
T ss_dssp CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCccc
Confidence 1122222 24677888877532 5667773332211 1222223455677899999999854
Q ss_pred ----------CcEEEEEcCCCCCCCccccc-CCcCeEEEEEcCCCcEEEEEcC
Q psy16005 194 ----------SKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 194 ----------~~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
..+.+||..+.+-....... .........+.||++.++.|+.
T Consensus 478 ~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 478 GIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 46899999876532111111 1222234556799999999874
No 287
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.71 E-value=1.6e-05 Score=65.05 Aligned_cols=204 Identities=12% Similarity=0.110 Sum_probs=119.4
Q ss_pred EEeCCCCCEEEEeC-C----------------cEEEEEecCCCceeeeeecCC----------cceEEEEEC-cCC---c
Q psy16005 23 LGGDPKGKNFLYTN-G----------------NSVIIRNIENPAISDIYTEHS----------CAVNVAKYS-PSG---F 71 (248)
Q Consensus 23 ~~~s~~~~~l~~~~-~----------------~~v~v~~~~~~~~~~~~~~~~----------~~v~~~~~s-~~~---~ 71 (248)
.++.++...++.+. + +.|..+|.++++..-.++... .++. +... .+| +
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK 324 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence 45566677777664 3 389999999999876665321 1222 2222 467 5
Q ss_pred EEEEEccCCeEEEEECCCCceeeeeeccC-----------CCCCe--------------------------eEEEEecCC
Q psy16005 72 YIASGDISGKVRIWDTVNKEHILKNEFHP-----------IGGPI--------------------------KDIAWSPDN 114 (248)
Q Consensus 72 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v--------------------------~~~~~~~~~ 114 (248)
.++.++.+|.+.++|.++++.+....+.. ...++ ..++++|+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 404 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR 404 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence 67888999999999999998765544321 00111 246788888
Q ss_pred CEEEEEeCCcEEEEEcc-CC---CCCceeEeCCCCCE-EEEE--c------CCCeEEEEE--CCceeeeecccCCCceEE
Q psy16005 115 QRMISIVENGAKVSSLP-ID---YEPSSISLDHEHGL-VAVG--G------ADSKISIVE--NGAKVSSLPIDYEPSSIS 179 (248)
Q Consensus 115 ~~l~~~~~~~~~i~~~~-~~---~~~~~~~~~~~~~~-~~~~--~------~~~~i~~~~--~~~~~~~~~~~~~~~~~~ 179 (248)
..+++...+-...+.+. .. ..+. + ...+ +... + ..+.|..|| +++.+...+...+...-.
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~-~----g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~ 479 (599)
T 1w6s_A 405 ELFFMGINHICMDWEPFMLPYKAGQFF-V----GATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGT 479 (599)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCC-C----CEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBC
T ss_pred CEEEEeccccceeeecccccccCCcce-e----cccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcc
Confidence 87777665543222211 10 0000 0 0000 1110 1 357788888 677777665544333222
Q ss_pred EcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEE
Q psy16005 180 LDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVA 232 (248)
Q Consensus 180 ~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 232 (248)
+...+.++++++.|+.++.||.++++.+-+...+......-+.+..+|+ |+++
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEE
Confidence 3334667788999999999999999987665544322223355667886 4443
No 288
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.70 E-value=1.7e-05 Score=60.64 Aligned_cols=222 Identities=13% Similarity=0.092 Sum_probs=119.5
Q ss_pred cCCcEEEEeCCCCC-EEEEeCCcEEEEEecCCCceeee---e----ecCCcceEEEEECcC---CcEEEEEc-c------
Q psy16005 17 RGQPIVLGGDPKGK-NFLYTNGNSVIIRNIENPAISDI---Y----TEHSCAVNVAKYSPS---GFYIASGD-I------ 78 (248)
Q Consensus 17 ~~~v~~~~~s~~~~-~l~~~~~~~v~v~~~~~~~~~~~---~----~~~~~~v~~~~~s~~---~~~l~~~~-~------ 78 (248)
...+..++|.|+|+ ++++-..+.|++++.+ +..... + .........++++|+ +..|+.+. .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 34678999999999 6766668899998853 332211 1 112345689999995 44444432 2
Q ss_pred -CCeEEEEECCCCc--e----eeeeecc---CCCCCeeEEEEecCCCEEEEEeCCc------------EEEEEccCCC--
Q psy16005 79 -SGKVRIWDTVNKE--H----ILKNEFH---PIGGPIKDIAWSPDNQRMISIVENG------------AKVSSLPIDY-- 134 (248)
Q Consensus 79 -dg~i~iwd~~~~~--~----~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~------------~~i~~~~~~~-- 134 (248)
...|..+++.... . .....+. ........++|.|||.+.++.++.+ -+|+.+..+.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 2356666664331 1 0001111 1112246799999997666655432 1555554322
Q ss_pred ----------------------CCceeEeCC-CCCEEEEEcC-C--CeEEEEECCce-----------------------
Q psy16005 135 ----------------------EPSSISLDH-EHGLVAVGGA-D--SKISIVENGAK----------------------- 165 (248)
Q Consensus 135 ----------------------~~~~~~~~~-~~~~~~~~~~-~--~~i~~~~~~~~----------------------- 165 (248)
.+..++|+| +++++++-.. + ..|.....+..
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 245677888 4555444222 1 12322211100
Q ss_pred --------eeeecccCCCceEEEcC-------CCCEEEEEcCCCcEEEEEcCCCCCCCc--ccccCCcCeEEEEEcCCCc
Q psy16005 166 --------VSSLPIDYEPSSISLDH-------EHGLVAVGGADSKVHIYELNNKSLSPK--AELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 166 --------~~~~~~~~~~~~~~~s~-------~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~~~~~v~~~~~s~~~~ 228 (248)
+..+.....+..+++.. +|.++++....+.|...++..++.... +.......+..+++.|||.
T Consensus 256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 01111122345566653 466777666778888888875532211 1112235789999999998
Q ss_pred EEEEEc-CCCeE
Q psy16005 229 YLVASD-AHRKV 239 (248)
Q Consensus 229 ~l~~~~-~d~~i 239 (248)
++++.. .+|.|
T Consensus 336 lyv~td~~~g~I 347 (353)
T 2g8s_A 336 LYVLTDESSGEL 347 (353)
T ss_dssp EEEEECSTTEEE
T ss_pred EEEEEeCCCCEE
Confidence 666543 34543
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.65 E-value=5.4e-05 Score=56.95 Aligned_cols=186 Identities=10% Similarity=0.005 Sum_probs=115.6
Q ss_pred CcEEEEeCCCCCEEEEeC--CcEEEEEecCCCcee-eeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCceee
Q psy16005 19 QPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~-~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
.+.+++|++.+..|+.+. .+.|+.++++..... ..+...-.....+++.+ .++++++-...+.|.++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~- 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK- 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-
Confidence 466889999777777764 788999998765422 22222223466788887 4555556566789999998765422
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccCC------------CCCceeEeCCCCC-EEEEEcCCCeEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPID------------YEPSSISLDHEHG-LVAVGGADSKISIV 160 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 160 (248)
......-.....++++|.+..|+.+... .-+|+.+..+ ..+..+++++++. ++++-...+.|..+
T Consensus 115 -~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 115 -VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp -EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred -EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 2222334567899999977777766532 2344443221 2356788998555 45555667888888
Q ss_pred E-CCceeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 161 E-NGAKVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 161 ~-~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
+ .+.....+. ....+..+++..+ .++.+-...+.|..++..+++..
T Consensus 194 d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 194 NLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp ETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCCSC
T ss_pred cCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCCce
Confidence 8 343333322 2334667777533 34455556788999998776543
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.64 E-value=5.8e-05 Score=57.06 Aligned_cols=216 Identities=7% Similarity=0.022 Sum_probs=122.7
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee---cCCcceEEEEECcCCcEEEEEccCCeEEEEECC-CCcee
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT---EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV-NKEHI 93 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~ 93 (248)
..+.++.+++ +..++++..+.|+. ..+.++.-.... .+...+..+.+.++++.++.+. +|.| |... .++.
T Consensus 80 ~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG~t- 153 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAI--YRTKDSGKN- 153 (327)
T ss_dssp CEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCE--EEESSTTSS-
T ss_pred ccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccE--EEEcCCCCC-
Confidence 4578888876 55556565665554 334444322221 2334577888877777666654 5543 3222 2322
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEE-EE----------ccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKV-SS----------LPIDYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
...........+..+++.++++.++++..+.+.. .+ .........+.+.+++.+++. +.+|.++..+
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~ 232 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDP 232 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEET
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecC
Confidence 2222234456788999999988877664443322 11 112334556777888876654 4567777773
Q ss_pred C-Cceeeeecc-----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc--cCCcCeEEEEEcCCCcEEEEE
Q psy16005 162 N-GAKVSSLPI-----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL--DHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 162 ~-~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~ 233 (248)
. ++.-..+.. ...+..+++.+++..++++. ++.+ ++..+.++.=..... .....+.++.|.++++ ++++
T Consensus 233 D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 309 (327)
T 2xbg_A 233 DNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFIL 309 (327)
T ss_dssp TEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEE
T ss_pred CCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEE
Confidence 3 333222221 22457788888887777665 6656 444454443221211 2345678899976555 5566
Q ss_pred cCCCeEEEEE
Q psy16005 234 DAHRKVVLYR 243 (248)
Q Consensus 234 ~~d~~i~vw~ 243 (248)
+.+|.|.-++
T Consensus 310 G~~G~i~~~~ 319 (327)
T 2xbg_A 310 GQKGILLRYV 319 (327)
T ss_dssp CSTTEEEEEC
T ss_pred cCCceEEEEc
Confidence 6788877665
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.60 E-value=0.00018 Score=60.73 Aligned_cols=215 Identities=12% Similarity=-0.001 Sum_probs=126.6
Q ss_pred CEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCC-cEEEEEccCCeEEEEECCCCce--eeeeeccCCCCCee
Q psy16005 30 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNKEH--ILKNEFHPIGGPIK 106 (248)
Q Consensus 30 ~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~ 106 (248)
.+|+.+....|+..++...+....+. ....+.+++|++.. .++++-...+.|+.+++..... .....+...-..+.
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 35666666778888887665544443 34567899999854 4455555668899999875311 11122222335677
Q ss_pred EEEEecCCCEEEEEeCCc--EEEEEccC----------CCCCceeEeCCCCCEEEEEc-CC-CeEEEEE-CCceeeeecc
Q psy16005 107 DIAWSPDNQRMISIVENG--AKVSSLPI----------DYEPSSISLDHEHGLVAVGG-AD-SKISIVE-NGAKVSSLPI 171 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~--~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~-~~~~~~~~~~ 171 (248)
.|++++.++.|+.+.... +.+.++.. -..+..|+++|.+..|+... .. +.|...+ .+.....+..
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 899998887777776443 34444321 23467888888755444433 33 6777777 4444433322
Q ss_pred --cCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEEE-cCCCeEEEEECCC
Q psy16005 172 --DYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVPD 246 (248)
Q Consensus 172 --~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~~~ 246 (248)
-..++.|++++.+..|+.+. ..+.|..+++........... ..-.....|++. +..|+.+ ...+.|...+..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 24578999998777666664 456899999876544222211 112234566664 3345544 4567787777655
Q ss_pred C
Q psy16005 247 F 247 (248)
Q Consensus 247 ~ 247 (248)
|
T Consensus 633 G 633 (791)
T 3m0c_C 633 G 633 (791)
T ss_dssp C
T ss_pred C
Confidence 4
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.60 E-value=0.00016 Score=59.65 Aligned_cols=214 Identities=9% Similarity=-0.029 Sum_probs=131.6
Q ss_pred CCEEEEeCCcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCceeeeeeccCCCCCee
Q psy16005 29 GKNFLYTNGNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106 (248)
Q Consensus 29 ~~~l~~~~~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 106 (248)
..+|+.+....|+..++++.+....+. ..-..+..++|++.+..|+ +-..++.|..+++...... ..+......+.
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~--~v~~~g~~~P~ 83 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLDYPE 83 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSCCC
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--EEEeCCCCCcc
Confidence 346777778899999998765433332 1234678999999655554 5556789999998765432 22222224577
Q ss_pred EEEEecCCCEEEEEeCCc--EEEEEccC----------CCCCceeEeCCCCCEEEEEc--CCCeEEEEE-CCceeeee-c
Q psy16005 107 DIAWSPDNQRMISIVENG--AKVSSLPI----------DYEPSSISLDHEHGLVAVGG--ADSKISIVE-NGAKVSSL-P 170 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~--~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~-~~~~~~~~-~ 170 (248)
.+++++.+..|+.+.... +.+.+++. -..+..++++|....+.... ..+.|...+ .+.....+ .
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~ 163 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP 163 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC
Confidence 899998877777776543 33333321 23456778887544444333 245666666 33333222 3
Q ss_pred ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 171 IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 171 ~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.-..++.+++++++..|+.+. ..+.|..+|+..... ..+ .........+++.. +..+++-...+.|...|..++
T Consensus 164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~-~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVI-ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-EECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEe-eccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 334578999999877666664 567899999976544 222 23334456788765 344444445788888886655
No 293
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.58 E-value=1e-05 Score=68.11 Aligned_cols=177 Identities=14% Similarity=0.157 Sum_probs=96.1
Q ss_pred ceEEEEEC-cCCcEEEEEcc-CC----eEEEEECCCC-ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc----EEEE
Q psy16005 60 AVNVAKYS-PSGFYIASGDI-SG----KVRIWDTVNK-EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG----AKVS 128 (248)
Q Consensus 60 ~v~~~~~s-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~~i~ 128 (248)
.+...+|| |||++||.+.. +| +|+++|+.++ +.+. ..+. .....++|+|||+.|+....+. ..+|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-cccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 67889999 99998885533 22 5999999988 6321 1121 1235688999999888776431 2444
Q ss_pred EccCCC---------------CCceeEeCCCCCEEEEEc---CCCeEEEEECCc---ee--eeecccCCCceEEEcCC--
Q psy16005 129 SLPIDY---------------EPSSISLDHEHGLVAVGG---ADSKISIVENGA---KV--SSLPIDYEPSSISLDHE-- 183 (248)
Q Consensus 129 ~~~~~~---------------~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~---~~--~~~~~~~~~~~~~~s~~-- 183 (248)
..+.+. ....+.++|++++|+... ....|+++|... .. ..+.... ....++++
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~s~~~~ 328 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE--KGVRYDVQMH 328 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC--TTCCEEEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC--CCceEEEeee
Confidence 433221 113456899999887654 234577777322 12 2222111 12223333
Q ss_pred -CCEEEE-EcCC----CcEEEEEcCCCCCCCc-ccccCCc--CeEEEEEcCCCcEEEEEcCCCe--EEEEEC
Q psy16005 184 -HGLVAV-GGAD----SKVHIYELNNKSLSPK-AELDHLG--PVTDCSFSPSNEYLVASDAHRK--VVLYRV 244 (248)
Q Consensus 184 -~~~l~~-~~~d----~~v~i~d~~~~~~~~~-~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~--i~vw~~ 244 (248)
|..|+. ...+ ..|..+|+.+...... +. .+.. .+..+.+. .+..+++...++. |.++++
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 555444 4333 2577777765322122 22 3333 34555554 2334455566665 445554
No 294
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=98.56 E-value=0.0001 Score=55.86 Aligned_cols=217 Identities=13% Similarity=0.150 Sum_probs=123.1
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee--e----ecCCcceEEEEECcC---CcEEEEE---ccCCeEE
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI--Y----TEHSCAVNVAKYSPS---GFYIASG---DISGKVR 83 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~--~----~~~~~~v~~~~~s~~---~~~l~~~---~~dg~i~ 83 (248)
......++|.|||+++++-. .|.|++++..+++.... + .........++++|+ +..|+.. ..+..|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 35678999999999888887 89999998665543211 1 123456789999995 3344432 2345566
Q ss_pred EEECCCCc---------eeeeeecc-CCCCCeeEEEEecCCCEEEEEeCC------------cEEEEEccCCC-------
Q psy16005 84 IWDTVNKE---------HILKNEFH-PIGGPIKDIAWSPDNQRMISIVEN------------GAKVSSLPIDY------- 134 (248)
Q Consensus 84 iwd~~~~~---------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~------------~~~i~~~~~~~------- 134 (248)
-|....+. ......++ .....-..|+|.|||.+.++.++. .-+|+.+..+.
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 66655421 11111121 112234679999999877776531 12566654332
Q ss_pred ------------CCceeEeCCCCCEEEEEcC-CC--eEEEEECCce------------------eeeeccc-CCCceEEE
Q psy16005 135 ------------EPSSISLDHEHGLVAVGGA-DS--KISIVENGAK------------------VSSLPID-YEPSSISL 180 (248)
Q Consensus 135 ------------~~~~~~~~~~~~~~~~~~~-~~--~i~~~~~~~~------------------~~~~~~~-~~~~~~~~ 180 (248)
.+..++|+|++.++++-.. ++ .|.....+.. +..+... ..+..++|
T Consensus 191 f~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~ 270 (347)
T 3das_A 191 FPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAY 270 (347)
T ss_dssp STTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEE
T ss_pred CCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEE
Confidence 2567888888776665432 22 2333221110 1111111 23455666
Q ss_pred cCCCCEEEEEcCCCcEEEEEcCCCCCC---CcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 181 DHEHGLVAVGGADSKVHIYELNNKSLS---PKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 181 s~~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
. +|..+...-..+.|....+...... ..+..+....+..|+..|||.++++.+
T Consensus 271 ~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 271 A-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp E-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred E-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 5 3555555555667777777654321 122223456899999999998776653
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.52 E-value=1.9e-06 Score=71.84 Aligned_cols=187 Identities=14% Similarity=0.086 Sum_probs=111.7
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCC----CceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~ 90 (248)
..+..++|++.+..|+.+. .+.|+.+++.. ......+.........+++.+. ++++++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3466789999888888875 67899998875 2222222211223456888864 454555456788999998765
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC------------CCCCceeEeCCCC-CEEEEEcCCCe
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI------------DYEPSSISLDHEH-GLVAVGGADSK 156 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~~ 156 (248)
... ..+.........++++|.+.+|+.+.... -+|+.+.. -..+..+++++++ .++++-...+.
T Consensus 486 ~~~--~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~ 563 (699)
T 1n7d_A 486 KRK--TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563 (699)
T ss_dssp CEE--EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred ceE--EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence 422 22222224567889999776666654322 23333221 1346788999864 55566667788
Q ss_pred EEEEE-CCceeeeecc----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 157 ISIVE-NGAKVSSLPI----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 157 i~~~~-~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
|..++ .+.....+.. ...+..+++..+ .++++....+.|..++..+++..
T Consensus 564 I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 564 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp EEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred EEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCce
Confidence 99888 3433333321 133566777654 34445556688999998766543
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.50 E-value=0.00021 Score=60.30 Aligned_cols=187 Identities=14% Similarity=0.082 Sum_probs=111.2
Q ss_pred cCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCC----ceeeeeecCCcceEEEEECcCCc-EEEEEccCCeEEEEECCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENP----AISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVN 89 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 89 (248)
...+.+++|++.+..|+.+. .+.|+.+++... .....+.........|++.+.++ ++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 34577899998777766664 678888888653 22333332334567889987664 445556678999999986
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC------------CCCceeEeCCCCCE-EEEEcCCC
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID------------YEPSSISLDHEHGL-VAVGGADS 155 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~~~~-~~~~~~~~ 155 (248)
.... ..+...-.....|+++|.+.+|+.+..+. -+|+..... ..+..|++++.+.. +++-....
T Consensus 503 ~~~~--~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 503 VKRK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp SSEE--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CeEE--EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 5432 22222334688999999877777765332 233333221 34677888865554 44445667
Q ss_pred eEEEEE-CCceeeeecc----cCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCC
Q psy16005 156 KISIVE-NGAKVSSLPI----DYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLS 207 (248)
Q Consensus 156 ~i~~~~-~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~ 207 (248)
.|..++ .+.....+.. -..+..+++. +..|+.+ ...+.|...|..+++..
T Consensus 581 ~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 581 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred cEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcce
Confidence 788888 4443333321 1223455553 3444444 45678888887776544
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=6.2e-05 Score=59.73 Aligned_cols=187 Identities=13% Similarity=0.032 Sum_probs=109.6
Q ss_pred CCcEEEEe-------CCCCCEEEEeC-Cc-------EEEEEecCC-Ccee-----eeeecCCcceEEEEECc-CCcEEEE
Q psy16005 18 GQPIVLGG-------DPKGKNFLYTN-GN-------SVIIRNIEN-PAIS-----DIYTEHSCAVNVAKYSP-SGFYIAS 75 (248)
Q Consensus 18 ~~v~~~~~-------s~~~~~l~~~~-~~-------~v~v~~~~~-~~~~-----~~~~~~~~~v~~~~~s~-~~~~l~~ 75 (248)
..+..++| +++|+.|+++. .+ .+.+++... +... ..+... .....++++| ++.++++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN 264 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence 35889999 99999777764 21 366665433 2221 223222 2345778899 4555666
Q ss_pred EccCCeEEEEECC-------CCce-----------e-eeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC--
Q psy16005 76 GDISGKVRIWDTV-------NKEH-----------I-LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY-- 134 (248)
Q Consensus 76 ~~~dg~i~iwd~~-------~~~~-----------~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~-- 134 (248)
-..++.|..+|+. ++.. . ..... +.......++|+|+|+.|+.+.....+|+.+....
T Consensus 265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~ 343 (496)
T 3kya_A 265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK 343 (496)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc
Confidence 6778899999987 4442 0 01122 22345689999999997777765544444422111
Q ss_pred -----------------------------CCc-eeEeC-------CCCCEEEEEcCCCeEEEEECCceeeeeccc-----
Q psy16005 135 -----------------------------EPS-SISLD-------HEHGLVAVGGADSKISIVENGAKVSSLPID----- 172 (248)
Q Consensus 135 -----------------------------~~~-~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----- 172 (248)
.+. .+... +++.++++-..+..|+.++....+.++...
T Consensus 344 ~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~ 423 (496)
T 3kya_A 344 KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTS 423 (496)
T ss_dssp TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHH
T ss_pred ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEeccccccc
Confidence 122 23333 345566666666777777732233333210
Q ss_pred --------------------CCCceEEEcCC-CCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 173 --------------------YEPSSISLDHE-HGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 173 --------------------~~~~~~~~s~~-~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
..+..++++++ +.++++=..+..|+.++++....
T Consensus 424 ~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 424 LADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp HHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred ccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 12567889986 66655556678899999876554
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.47 E-value=0.00017 Score=59.27 Aligned_cols=198 Identities=9% Similarity=-0.008 Sum_probs=111.8
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCce-eeeeecCCcceEEEEECcCCc-EEEEEccCCeEEEEECCCCc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAI-SDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 91 (248)
..+.+..++|++.+..|+.+. .+.|..++++.... ...+...-.....+++.+.++ +.++-...+.|.+.++....
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence 345678999999888888775 67899898875532 222322235678999998554 45555667899999987654
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeee-
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSL- 169 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 169 (248)
.. ......-.....|+++|.+..|+.+..+ ..+|+.... .|.....+
T Consensus 118 ~~--~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~-----------------------------dG~~~~~l~ 166 (619)
T 3s94_A 118 RK--VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM-----------------------------DGSSRFIII 166 (619)
T ss_dssp CE--EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEET-----------------------------TSCSCEEEE
T ss_pred EE--EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEEC-----------------------------CCCceEEEE
Confidence 22 1222223456788888876666554422 122222211 11111111
Q ss_pred -cccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE-cCCCeEEEEECCC
Q psy16005 170 -PIDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVPD 246 (248)
Q Consensus 170 -~~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~~~ 246 (248)
..-..++.+++++++..|+.+ ...+.|..+|+.......... +.......+++..+ .|+.+ ...+.|...|..+
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED--ILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS--EEEEECTTTCSEEEEESSS
T ss_pred eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCC
Confidence 112346889999876666555 445778888887644322211 11223356677655 44444 4567888888766
Q ss_pred C
Q psy16005 247 F 247 (248)
Q Consensus 247 ~ 247 (248)
+
T Consensus 244 g 244 (619)
T 3s94_A 244 G 244 (619)
T ss_dssp C
T ss_pred C
Confidence 5
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.43 E-value=0.00047 Score=56.82 Aligned_cols=187 Identities=7% Similarity=-0.047 Sum_probs=116.2
Q ss_pred cCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCc-EEEEEccCCeEEEEECCCCcee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
...+..++|++.+..|+.+. ++.|+.++++.......+.........+++.+.+. +.++-...+.|.+.++......
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence 34678999999888887774 78999999876544443432224567888887544 4455556789999998765422
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccC-----------CCCCceeEeCCCCC-EEEEEcCCCeEEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPI-----------DYEPSSISLDHEHG-LVAVGGADSKISIV 160 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 160 (248)
......-.....++++|....|+.+..+ .-+|+.... -..+..+++++++. ++++-...+.|..+
T Consensus 116 --~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~ 193 (628)
T 4a0p_A 116 --VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESS 193 (628)
T ss_dssp --EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred --EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEE
Confidence 1222233567899999976666666532 234444322 23466788888655 44455567788888
Q ss_pred E-CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 161 E-NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 161 ~-~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
+ .+.....+. ....+..+++.. +.++++-...+.|...|..+++.
T Consensus 194 d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 194 NMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp ETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred cCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 8 333222222 223456777764 33444444578888888776654
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.42 E-value=3.4e-06 Score=70.32 Aligned_cols=213 Identities=12% Similarity=-0.000 Sum_probs=118.7
Q ss_pred EEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEE-ccCCeEEEEECCC----CceeeeeeccCCCCCe
Q psy16005 31 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVN----KEHILKNEFHPIGGPI 105 (248)
Q Consensus 31 ~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v 105 (248)
+|+.+..+.|+..++.+.+....+.. ...+.+++|++.+..|+.+ ...+.|+.+++.+ .... ..+...-...
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~~~~~~P 455 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAP 455 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC--CBCCSCC--C
T ss_pred eEEecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE--EEEeCCCCCc
Confidence 44555566788888877665554433 3456789999866666655 4567899999875 2211 1111112335
Q ss_pred eEEEEecCCCEEEEEeC--CcEEEEEccC----------CCCCceeEeCCCCCEEEEEc-CC-CeEEEEE-CCceeeeec
Q psy16005 106 KDIAWSPDNQRMISIVE--NGAKVSSLPI----------DYEPSSISLDHEHGLVAVGG-AD-SKISIVE-NGAKVSSLP 170 (248)
Q Consensus 106 ~~~~~~~~~~~l~~~~~--~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~-~~~~~~~~~ 170 (248)
..+++++.+..|+.+.. +.+.+.++.. ...+..++++|.+..|+... .. +.|..++ .+.....+.
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 66888765555555432 3344444321 24567888888655444433 22 6777776 333333221
Q ss_pred --ccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 171 --IDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 171 --~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.-..++.++++|++..|+.+ ...+.|..+++........... ........|++..+ ..+++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 12347889999976655544 4567899999875432211111 11123445566443 3444445568888888655
Q ss_pred C
Q psy16005 247 F 247 (248)
Q Consensus 247 ~ 247 (248)
+
T Consensus 615 G 615 (699)
T 1n7d_A 615 G 615 (699)
T ss_dssp E
T ss_pred C
Confidence 4
No 301
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.39 E-value=0.00016 Score=54.97 Aligned_cols=175 Identities=18% Similarity=0.147 Sum_probs=105.5
Q ss_pred ceEEEEECcCCcEEEEE------------ccCCeEEEEECCCCc-eeeeeeccC-----CCCCeeEEEEec--CCC-EEE
Q psy16005 60 AVNVAKYSPSGFYIASG------------DISGKVRIWDTVNKE-HILKNEFHP-----IGGPIKDIAWSP--DNQ-RMI 118 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~------------~~dg~i~iwd~~~~~-~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l~ 118 (248)
....+...|+|..++++ ..+|.|.++|..+.. ......+.+ .......+.+.+ +++ +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45567778887655554 268999999987431 112223322 224677888766 454 565
Q ss_pred EEeC----CcEEEEEccCC---------------CCCceeEeCCCCCEEEEEc-----------------CCCeEEEEEC
Q psy16005 119 SIVE----NGAKVSSLPID---------------YEPSSISLDHEHGLVAVGG-----------------ADSKISIVEN 162 (248)
Q Consensus 119 ~~~~----~~~~i~~~~~~---------------~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~ 162 (248)
++.. ..+.++++... ..++.+...++|..+++.. ..+.++.++.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 5542 23466665432 2345677788888777654 2356777776
Q ss_pred CceeeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCC-CCCCCcccccCCcCeEEEEEcC-CCcEEEEEc
Q psy16005 163 GAKVSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNN-KSLSPKAELDHLGPVTDCSFSP-SNEYLVASD 234 (248)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 234 (248)
++.......-..++.++|+||++.|+++. ..+.|+.|++.. ++..........+....+++.+ +|.+.+++.
T Consensus 211 ~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 211 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence 54332233334578999999999777765 567899999864 2221111112245678889998 588777554
No 302
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.37 E-value=0.00035 Score=52.73 Aligned_cols=217 Identities=9% Similarity=-0.044 Sum_probs=120.2
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee----cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT----EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
...+.++.|.+++..++++..+.|.. ..+.++.=.... .....+.++.+++ ++.++ ++..|.|.. ..+.++.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSS
T ss_pred CCcEEEEEECCCCcEEEEcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCC
Confidence 45789999998888888877776643 334443212111 1244688999986 44444 455665443 2333332
Q ss_pred eeeeecc-CCCCCeeEEEEecCCCEEEEEeCCcEEE-------EEc---cCCCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 93 ILKNEFH-PIGGPIKDIAWSPDNQRMISIVENGAKV-------SSL---PIDYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 93 ~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~i-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
-...... .+...+..+.+.++++.++++....+.. |.. .....+..+.+.+++.+++++...+..+-.|
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred ceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 1111111 2334577888877777666554333311 221 1223456778888888887765544444445
Q ss_pred C-Cceeeee--cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC---CCCcccccCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 162 N-GAKVSSL--PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKS---LSPKAELDHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 162 ~-~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
. +..-..+ .....+..+++++++..++++ .+|.+++.+...++ ........+...+.++.+.+++..++++.
T Consensus 191 ~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~- 268 (327)
T 2xbg_A 191 PGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG- 268 (327)
T ss_dssp TTCSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-
T ss_pred CCCCceeECCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-
Confidence 4 3432222 234456788889988766554 57777776422222 11111012234588999998887666654
Q ss_pred CCeE
Q psy16005 236 HRKV 239 (248)
Q Consensus 236 d~~i 239 (248)
++.+
T Consensus 269 ~g~i 272 (327)
T 2xbg_A 269 AGAL 272 (327)
T ss_dssp TTCE
T ss_pred CCeE
Confidence 5655
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.02 E-value=0.00094 Score=49.96 Aligned_cols=166 Identities=10% Similarity=0.141 Sum_probs=95.6
Q ss_pred ceEEEEECcCCcEEEEEc-cCCeEEEEECCCCceeeeeeccC----CC--CCeeEEEE---ecCCCEEEEEeCCcEEEEE
Q psy16005 60 AVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEHILKNEFHP----IG--GPIKDIAW---SPDNQRMISIVENGAKVSS 129 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~----~~--~~v~~~~~---~~~~~~l~~~~~~~~~i~~ 129 (248)
--.+++|++....++.++ ..++|..||...+.... ..+.. .. ..+..+.| .|+++.+++.....
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~-~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~----- 87 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN-VVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK----- 87 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE-ECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT-----
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE-EecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc-----
Confidence 345788988544555544 78999999997654332 23332 11 13578888 68866666432100
Q ss_pred ccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-C----Cceeeeeccc--------------CCCceEEEcCCCCEEEEE
Q psy16005 130 LPIDYEPSSISLDHEHGLVAVGGADSKISIVE-N----GAKVSSLPID--------------YEPSSISLDHEHGLVAVG 190 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~----~~~~~~~~~~--------------~~~~~~~~s~~~~~l~~~ 190 (248)
+|...+.. .+.+..+..+| . ++.+....+. ..++.++..++|+..+++
T Consensus 88 ----------af~~~g~~---~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~ 154 (334)
T 2p9w_A 88 ----------SFNFADQS---SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF 154 (334)
T ss_dssp ----------TTCTTSCC---SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE
T ss_pred ----------cccccccc---cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC
Confidence 00000000 01233444455 2 3333332211 135788899999988877
Q ss_pred cCC-CcEEEEEcCCCCCCCcccc-----cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 191 GAD-SKVHIYELNNKSLSPKAEL-----DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 191 ~~d-~~v~i~d~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+.. +.|..++....... .+.. ......+.++++|+|+.|++....|.+..+|+.
T Consensus 155 s~~~~~I~rV~pdG~~~~-~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 155 ALGMPAIARVSADGKTVS-TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EESSCEEEEECTTSCCEE-EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCCCCeEEEEeCCCCEEe-eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 777 77666666544221 1110 112346789999999998888779999999975
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=98.02 E-value=0.0027 Score=49.15 Aligned_cols=161 Identities=12% Similarity=0.102 Sum_probs=95.5
Q ss_pred CCcEEEEEccCCeEEEEECCCCceeeeeeccC--CCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCC
Q psy16005 69 SGFYIASGDISGKVRIWDTVNKEHILKNEFHP--IGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHG 146 (248)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 146 (248)
+|..++.+- ++.||.-++..+..-.....+. .-..+..+..+|+|++|+..+..++.+-.++.+..... +++
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~----~~~- 104 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVE----DVS- 104 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCC----CHH-
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCc----ccc-
Confidence 444444432 3677777766433211122221 12357889999999999999999999888874322110 000
Q ss_pred EEEEEcCCCeEEEEECCceeeeecccCCCceEEEcC---CCCEEEEEcCCCcEEEEEcCCCCCCCccc---------ccC
Q psy16005 147 LVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDH---EHGLVAVGGADSKVHIYELNNKSLSPKAE---------LDH 214 (248)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---------~~~ 214 (248)
....-.++.|..+... .....++..+.|+| .+..|++-..|+.|++||+......+... ...
T Consensus 105 ----~~~~~q~~ty~l~~~~--~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~ 178 (452)
T 3pbp_A 105 ----IQDAFQIFHYSIDEEE--VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDAR 178 (452)
T ss_dssp ----HHHTTEEEEEEGGGCC----CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSS
T ss_pred ----cccccceeEEEcCCcc--cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcc
Confidence 0000123334433211 11245678899999 45588888999999999998633222211 012
Q ss_pred CcCeEEEEEcCCCcEEEE--EcCCCeEEE
Q psy16005 215 LGPVTDCSFSPSNEYLVA--SDAHRKVVL 241 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~--~~~d~~i~v 241 (248)
...|.+++|.+++-.|+. .+..|.|+-
T Consensus 179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 357889999998876666 447777763
No 305
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.97 E-value=0.0025 Score=47.46 Aligned_cols=199 Identities=7% Similarity=0.043 Sum_probs=112.9
Q ss_pred CCCCCEEEEeC---CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC--------------CeEEEEECC
Q psy16005 26 DPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS--------------GKVRIWDTV 88 (248)
Q Consensus 26 s~~~~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~ 88 (248)
+++|..++... ++.|+..+.+... ...+.. .. +--+++++++|+-+... ..|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 35778887764 5678888865444 333432 22 34457889888876543 367777777
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEe---CCcEEEEEccCCCCCc-------eeEeCCCCCEEEEEcC-CCeE
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV---ENGAKVSSLPIDYEPS-------SISLDHEHGLVAVGGA-DSKI 157 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~i 157 (248)
.++.. .+.. . ....|+++++.|+... .+...|+.+..+.... ...++++++.|.-.+. ...|
T Consensus 97 g~~~~---~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 97 GHGST---VLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp SCCCE---EEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCCCCSEEETTEEEEECTTTCCE
T ss_pred CCcce---Eeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCceEeeEECCEEEEEeCCCceE
Confidence 66532 2221 1 1236788999999887 4556777765443211 1345567776665544 5677
Q ss_pred EEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcCC--CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 158 SIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD--SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
+..+ .+.....+ ... .....++|++.+|+-...+ ..|..-++...... .+. . ..+ ..|+|++++|+.++
T Consensus 170 y~~~l~g~~~~~l-~~~-~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt-~--~~~--~~~~~~g~~Iy~~~ 241 (302)
T 3s25_A 170 YRYDTASQSEALF-YDC-NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV-VLT-E--ANI--EHYNVYGSLIFYQR 241 (302)
T ss_dssp EEEETTTTEEEEE-ECS-CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCE-ECS-C--SCE--EEEEEETTEEEEEE
T ss_pred EEEECCCCCEEEE-eCC-CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeE-EEe-C--CCc--ceEEECCCEEEEEE
Confidence 7777 33333333 122 2223466999988876543 35666666655432 221 1 223 34778888887652
Q ss_pred C--CCeEEEEEC
Q psy16005 235 A--HRKVVLYRV 244 (248)
Q Consensus 235 ~--d~~i~vw~~ 244 (248)
. .+.|..-++
T Consensus 242 ~~~~~~i~~~~~ 253 (302)
T 3s25_A 242 GGDNPALCVVKN 253 (302)
T ss_dssp CSSSCEEEEEET
T ss_pred CCCCcEEEEEEC
Confidence 2 344444444
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.89 E-value=0.0043 Score=47.33 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=95.4
Q ss_pred cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec---cCCCCCeeEEEEecC---CCEEEEEeC-------CcE
Q psy16005 59 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF---HPIGGPIKDIAWSPD---NQRMISIVE-------NGA 125 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~-------~~~ 125 (248)
.....++|.|+|+++++ ..+|.|.+++ +++......+ .........++++|+ +..|+++.. ..+
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34679999999985555 5669999998 3332111111 122356889999998 555555432 222
Q ss_pred EEEEcc-------------C------CCCCceeEeCCCCCEEEEEcC-------------CCeEEEEE-CCc--------
Q psy16005 126 KVSSLP-------------I------DYEPSSISLDHEHGLVAVGGA-------------DSKISIVE-NGA-------- 164 (248)
Q Consensus 126 ~i~~~~-------------~------~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~-~~~-------- 164 (248)
..+++. . ......+.+.|+|.++++.+. .+.|.-++ .+.
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 222221 0 113467889999987776432 14555555 221
Q ss_pred -----eeeeecc-cCCCceEEEcC-CCCEEEEEcCCCcE------EEEEcCCCCC----------------CCcccccCC
Q psy16005 165 -----KVSSLPI-DYEPSSISLDH-EHGLVAVGGADSKV------HIYELNNKSL----------------SPKAELDHL 215 (248)
Q Consensus 165 -----~~~~~~~-~~~~~~~~~s~-~~~~l~~~~~d~~v------~i~d~~~~~~----------------~~~~~~~~~ 215 (248)
....+.. ...+..++|+| ++.++++-.....+ .|.-+..+.. .......+.
T Consensus 188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 267 (352)
T 2ism_A 188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG 267 (352)
T ss_dssp TCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC
Confidence 1111111 12367889999 66655543322221 2332332220 011111223
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.....++| .+|..+++.-..+.|...+++
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~ 296 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLE 296 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEE
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEEC
Confidence 34567777 466666665556666666553
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.84 E-value=0.0051 Score=46.83 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=107.3
Q ss_pred cEEEEeCCCCCEEEEe-------------CCcEEEEEecCCC--ceee-eeec-----CCcceEEEEECc--CCc-EEEE
Q psy16005 20 PIVLGGDPKGKNFLYT-------------NGNSVIIRNIENP--AISD-IYTE-----HSCAVNVAKYSP--SGF-YIAS 75 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~-------------~~~~v~v~~~~~~--~~~~-~~~~-----~~~~v~~~~~s~--~~~-~l~~ 75 (248)
.-.+...|+|..++++ .+|.|.++|..+. +... .+.+ ..-....+.+.+ ++. +|+.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4567788988777775 4789999998742 2211 1222 123566777765 343 3444
Q ss_pred E-cc--CCeEEEEECCCC--ceeeeeeccCC-CCCeeEEEEecCCCEEEEEeC----------------CcEEEEEccCC
Q psy16005 76 G-DI--SGKVRIWDTVNK--EHILKNEFHPI-GGPIKDIAWSPDNQRMISIVE----------------NGAKVSSLPID 133 (248)
Q Consensus 76 ~-~~--dg~i~iwd~~~~--~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~----------------~~~~i~~~~~~ 133 (248)
+ .. +.+|.+|++..+ .......+.+. -...+.+.+.++|...++... ..-.+|.+...
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 3 22 567888877643 22222233321 246789999999987766531 12355555432
Q ss_pred ---------CCCceeEeCCCCCEEEEE-cCCCeEEEEEC---Cce--eeeecccCCCceEEEcC-CCCEEEEEcCC-CcE
Q psy16005 134 ---------YEPSSISLDHEHGLVAVG-GADSKISIVEN---GAK--VSSLPIDYEPSSISLDH-EHGLVAVGGAD-SKV 196 (248)
Q Consensus 134 ---------~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~---~~~--~~~~~~~~~~~~~~~s~-~~~~l~~~~~d-~~v 196 (248)
..++.++++|+++.+.++ +..+.|..|+. +.. ...+.....+..+++++ +|++.+++..+ +.|
T Consensus 212 ~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v 291 (355)
T 3sre_A 212 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRI 291 (355)
T ss_dssp CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHH
T ss_pred eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEE
Confidence 235678999999866654 46788888882 322 12333445577899999 59877765433 234
Q ss_pred EEEEc
Q psy16005 197 HIYEL 201 (248)
Q Consensus 197 ~i~d~ 201 (248)
..|+.
T Consensus 292 ~~~~P 296 (355)
T 3sre_A 292 FFYDA 296 (355)
T ss_dssp HSCCT
T ss_pred EEECC
Confidence 43443
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.83 E-value=0.0046 Score=45.83 Aligned_cols=214 Identities=13% Similarity=0.050 Sum_probs=105.3
Q ss_pred CCCEEEEeC-C------cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC-----CeEEEEECCCCc--
Q psy16005 28 KGKNFLYTN-G------NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNKE-- 91 (248)
Q Consensus 28 ~~~~l~~~~-~------~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~-- 91 (248)
++..++.|+ . ..+.+||..+.+-... +.........+. .++++++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 455666665 1 3788899877653321 111111112222 356777887755 468999998876
Q ss_pred -eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc------EEEEEccCCC----------CCceeEeCCCCCEEEEEcCC
Q psy16005 92 -HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG------AKVSSLPIDY----------EPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 92 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (248)
......++........+. .+++.++.++.++ +.+++..... .........++++++.|+.+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 169 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYD 169 (301)
T ss_dssp CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBC
T ss_pred eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCC
Confidence 433233322222222222 2566666665322 3444443211 00111112256677776654
Q ss_pred -----CeEEEEECCceeee-ec-ccCCC-ceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCCCccccc-CCcCeEE
Q psy16005 155 -----SKISIVENGAKVSS-LP-IDYEP-SSISLDHEHGLVAVGGAD-----SKVHIYELNNKSLSPKAELD-HLGPVTD 220 (248)
Q Consensus 155 -----~~i~~~~~~~~~~~-~~-~~~~~-~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~-~~~~v~~ 220 (248)
..+..||....... +. ..... ...+..-++++++.|+.+ ..+.+||+.+.+-....... .......
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 249 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGA 249 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeE
Confidence 35777884332222 11 11111 111222356777777754 46899999876532111111 1111222
Q ss_pred EEEcCCCcEEEEEcCC-----CeEEEEECCCC
Q psy16005 221 CSFSPSNEYLVASDAH-----RKVVLYRVPDF 247 (248)
Q Consensus 221 ~~~s~~~~~l~~~~~d-----~~i~vw~~~~~ 247 (248)
+.+ +++.++.|+.+ ..+.+||+++.
T Consensus 250 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 250 TVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 223 67777777654 46788888764
No 309
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.79 E-value=0.00099 Score=51.49 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=76.5
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc------------eeeeeec------CCcceEEEEECc---CCcEEEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA------------ISDIYTE------HSCAVNVAKYSP---SGFYIASG 76 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~------------~~~~~~~------~~~~v~~~~~s~---~~~~l~~~ 76 (248)
..+..+..||+|++||..++..|.|-.+..+. ..+.+.- ...+|..+.|+| .+..|++-
T Consensus 66 ~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp CTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 46778999999999999999999998887321 0112221 246799999999 45689999
Q ss_pred ccCCeEEEEECCCCceeee--------eeccCCCCCeeEEEEecCCCEEEEEe--CCc
Q psy16005 77 DISGKVRIWDTVNKEHILK--------NEFHPIGGPIKDIAWSPDNQRMISIV--ENG 124 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~ 124 (248)
..|+.|++||+........ +........|.+++|.+++-.|...+ ++|
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~G 203 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGG 203 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSC
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCC
Confidence 9999999999986322111 11122336788999999887777755 444
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.76 E-value=0.0064 Score=45.39 Aligned_cols=203 Identities=12% Similarity=0.114 Sum_probs=123.2
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCE
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (248)
+..|.|.|+.++..+....-. --+.-.+|..+.+|.-. ..++.++|+++.+.+....+. ..|.--.|-. .+.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis-~~~ 119 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS-LNT 119 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCEEEEEECS-SSE
T ss_pred CCEEEEEECCCCCCccccccc---cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC---CccEEEEecC-CCe
Confidence 347888899886654322211 12334689888777654 678999999999877655553 5777777764 567
Q ss_pred EEEEeCCcEEEEEccCCCCCc---------------eeEeCCCCCEEEEEc---C----CCeEEEEECCc-eeeeecccC
Q psy16005 117 MISIVENGAKVSSLPIDYEPS---------------SISLDHEHGLVAVGG---A----DSKISIVENGA-KVSSLPIDY 173 (248)
Q Consensus 117 l~~~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~---~----~~~i~~~~~~~-~~~~~~~~~ 173 (248)
|+...+..+.-|++..+..+. ....+++.+.++..+ . .|.+.+|...+ .-+.++.+.
T Consensus 120 L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGha 199 (365)
T 2xzh_A 120 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA 199 (365)
T ss_dssp EEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSE
T ss_pred EEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeee
Confidence 888888888889886543332 334567777665433 1 25677787333 333333221
Q ss_pred CCceEEEcCCC-----CEEEEEcC---CCcEEEEEcCCC---CCCCc-----cccc---CCcCeEEEEEcCCCcEEEEEc
Q psy16005 174 EPSSISLDHEH-----GLVAVGGA---DSKVHIYELNNK---SLSPK-----AELD---HLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 174 ~~~~~~~s~~~-----~~l~~~~~---d~~v~i~d~~~~---~~~~~-----~~~~---~~~~v~~~~~s~~~~~l~~~~ 234 (248)
... ..+-.+| .+++.+.. .+.++|.++... ..... ...+ -.+-.-++..|+.-..++..+
T Consensus 200 a~F-~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviT 278 (365)
T 2xzh_A 200 ASF-AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 278 (365)
T ss_dssp EEE-EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEE
T ss_pred eee-EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEe
Confidence 110 1111111 23444332 258999998543 11100 0011 234567788888888899999
Q ss_pred CCCeEEEEECCCCC
Q psy16005 235 AHRKVVLYRVPDFE 248 (248)
Q Consensus 235 ~d~~i~vw~~~~~~ 248 (248)
.-|.|++||++|+.
T Consensus 279 K~G~ihlyDleTgt 292 (365)
T 2xzh_A 279 KYGYIHLYDLETGT 292 (365)
T ss_dssp TTSEEEEEETTTCC
T ss_pred CCcEEEEEEcccCc
Confidence 99999999999874
No 311
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.73 E-value=0.013 Score=48.22 Aligned_cols=183 Identities=11% Similarity=0.001 Sum_probs=109.2
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
..+.+++|.+.+..|+.+. .+.|+.++++.......+...-.....+++.+ .+++.++-+..+.|.+.++......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~- 427 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK- 427 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE-
Confidence 4577899998777777664 77899998876444333333334567888887 4455556566789999998765421
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccC------------CCCCceeEeCCCCCE-EEEEcCCCeEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPI------------DYEPSSISLDHEHGL-VAVGGADSKISIV 160 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 160 (248)
......-....+++++|....|+.+... ..+|+.... -..+..+++++++.. +++-...+.|..+
T Consensus 428 -~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~ 506 (619)
T 3s94_A 428 -ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 506 (619)
T ss_dssp -EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred -EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEE
Confidence 2222233568999999975566555432 234443322 134567888875544 4454566788888
Q ss_pred E-CCceeeeec--ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCC
Q psy16005 161 E-NGAKVSSLP--IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNK 204 (248)
Q Consensus 161 ~-~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~ 204 (248)
+ .+...+.+. .-..+..+++..+ .|+.+. ..+.|...|..++
T Consensus 507 ~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 507 NTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp ESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSC
T ss_pred ecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCC
Confidence 7 343333321 1223556666543 444443 4456766666665
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.73 E-value=0.0028 Score=44.50 Aligned_cols=99 Identities=10% Similarity=0.035 Sum_probs=62.4
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcc--------eEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA--------VNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
..+..++|+|+|.+.++ .++.++-.+..+.....-+ +.... ..++.|.|+|.+.++ .||.|.-++..+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~-~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWM-GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHH-HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCccccc-ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999999997777 8788777776543221111 11122 478999999987777 569998887643
Q ss_pred Ccee-e--e-eec-cCCCCCeeEEEEecCCCEEEEE
Q psy16005 90 KEHI-L--K-NEF-HPIGGPIKDIAWSPDNQRMISI 120 (248)
Q Consensus 90 ~~~~-~--~-~~~-~~~~~~v~~~~~~~~~~~l~~~ 120 (248)
...- . . ..+ ..--..+..+.+.|+|...++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 2211 0 0 001 1111467889999999877776
No 313
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.62 E-value=0.015 Score=45.90 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=63.2
Q ss_pred cCCcEEEEeCCCCCEEEEeCC-cEEEEEecCCCceee--eeec------CCcceEEEEECcC---CcEEEEEcc------
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNG-NSVIIRNIENPAISD--IYTE------HSCAVNVAKYSPS---GFYIASGDI------ 78 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~-~~v~v~~~~~~~~~~--~~~~------~~~~v~~~~~s~~---~~~l~~~~~------ 78 (248)
......++|.|+|+++++-.. +.|++++..+++... .+.. .......++|+|+ +..|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 346789999999998888765 578888765554322 1211 2356779999995 455544432
Q ss_pred -------CCeEEEEECCCCc------eeeeeecc-CCCCCeeEEEEecCCCEEEEEeC
Q psy16005 79 -------SGKVRIWDTVNKE------HILKNEFH-PIGGPIKDIAWSPDNQRMISIVE 122 (248)
Q Consensus 79 -------dg~i~iwd~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~ 122 (248)
...|.-++...+. ......+. ........|+|.|||++.++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 1245555543221 11111122 11234789999999987777654
No 314
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.59 E-value=0.035 Score=49.18 Aligned_cols=222 Identities=11% Similarity=0.066 Sum_probs=121.7
Q ss_pred cEEEEeCCCCCEEEEeC---CcEEEEEecCCC------ceeeeeecCCcceEEEEECcC----CcEEEEEc---cCCeEE
Q psy16005 20 PIVLGGDPKGKNFLYTN---GNSVIIRNIENP------AISDIYTEHSCAVNVAKYSPS----GFYIASGD---ISGKVR 83 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~---~~~v~v~~~~~~------~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~---~dg~i~ 83 (248)
..++.+-.+| +++.|+ |..+.-|+.... +.+..+ ..-++|.+++.... ...|++++ .+|.++
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~ 406 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLR 406 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEE
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEE
Confidence 3566666666 555554 445555543221 223334 34578888887532 23455443 568888
Q ss_pred EEECCCC-ceeeeeeccCCCCCeeEEEEe---cCCCEEEEEeCCcEEEEEccCCCCCcee---EeCCCCCEEEEEcC--C
Q psy16005 84 IWDTVNK-EHILKNEFHPIGGPIKDIAWS---PDNQRMISIVENGAKVSSLPIDYEPSSI---SLDHEHGLVAVGGA--D 154 (248)
Q Consensus 84 iwd~~~~-~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~--~ 154 (248)
+..-.-+ +......+++ ...++.+... +.+.+|+.+..+...+..+..+ .+..+ -|..+...++++.- +
T Consensus 407 ~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~~~ 484 (1158)
T 3ei3_A 407 IIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQ 484 (1158)
T ss_dssp EEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETT-EEEEECCTTCCSSSCEEEEEEETTT
T ss_pred EEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCC-cccccccccccCCCCcEEEEEcCCC
Confidence 8764322 1122233332 2445555432 2356888888888888776432 12111 23344555655532 2
Q ss_pred C-------eEEEEEC--Cceeeeeccc--CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 155 S-------KISIVEN--GAKVSSLPID--YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 155 ~-------~i~~~~~--~~~~~~~~~~--~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
. .|++.+. ...+.....+ ..+...+.+ +..++.++ ++.+..+++..++........-...|.|+++
T Consensus 485 ~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i 561 (1158)
T 3ei3_A 485 QLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDI 561 (1158)
T ss_dssp EEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEEC
T ss_pred eEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEe
Confidence 2 2344442 2234334322 345555544 34566664 6778888887654322222234567999999
Q ss_pred cCC------CcEEEEEcC-CCeEEEEECCCCC
Q psy16005 224 SPS------NEYLVASDA-HRKVVLYRVPDFE 248 (248)
Q Consensus 224 s~~------~~~l~~~~~-d~~i~vw~~~~~~ 248 (248)
.|. +++++.|.. |++++|+++++.+
T Consensus 562 ~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 562 TPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp CCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred ecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 864 368999986 9999999997653
No 315
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.50 E-value=0.021 Score=44.46 Aligned_cols=204 Identities=12% Similarity=0.136 Sum_probs=123.8
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCE
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (248)
+..|.|.|+.++..+....-. --+.-.+|..+.+|.-. ..++.|+|+++.+.+....+. ..|..-.|-. .+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis-~~~ 118 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS-LNT 118 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEE-TTE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecC-CCe
Confidence 458889998876654322211 12344788888777654 679999999998877555553 4677777764 467
Q ss_pred EEEEeCCcEEEEEccCCCCC---------------ceeEeCCCCCEEEEEc---C----CCeEEEEECCc-eeeeecccC
Q psy16005 117 MISIVENGAKVSSLPIDYEP---------------SSISLDHEHGLVAVGG---A----DSKISIVENGA-KVSSLPIDY 173 (248)
Q Consensus 117 l~~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~~~~~---~----~~~i~~~~~~~-~~~~~~~~~ 173 (248)
|+...+..+.-|++..+..+ .....+++.+.++..+ . .|.+.+|...+ .-+.++.+.
T Consensus 119 l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGha 198 (494)
T 1bpo_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA 198 (494)
T ss_dssp EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSE
T ss_pred EEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeee
Confidence 88888888888888654333 2334567777665432 1 35677777333 333333221
Q ss_pred CC-ceEEEc--C-CCCEEEEEcC---CCcEEEEEcCCC---CCCC-c----ccc---cCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 174 EP-SSISLD--H-EHGLVAVGGA---DSKVHIYELNNK---SLSP-K----AEL---DHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 174 ~~-~~~~~s--~-~~~~l~~~~~---d~~v~i~d~~~~---~~~~-~----~~~---~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
.. ..+... + ....++.+.. .+.++|.++... .... . ... .-.+-..++..|+.-..++..+.
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK 278 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence 11 111111 1 1124444443 268999998543 1100 0 001 12345677888998888999999
Q ss_pred CCeEEEEECCCCC
Q psy16005 236 HRKVVLYRVPDFE 248 (248)
Q Consensus 236 d~~i~vw~~~~~~ 248 (248)
-|.|++||++|+.
T Consensus 279 ~G~i~lyDleTgt 291 (494)
T 1bpo_A 279 YGYIHLYDLETGT 291 (494)
T ss_dssp TSEEEEEETTTCC
T ss_pred CceEEEEecccce
Confidence 9999999999873
No 316
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=97.45 E-value=0.028 Score=44.55 Aligned_cols=106 Identities=15% Similarity=0.057 Sum_probs=60.8
Q ss_pred CCcEEEEeCCCCC--EEEEeCCcEEEEEecCCCc---eeeeee-----c----CCcceEEEEECcC----CcEEEEEcc-
Q psy16005 18 GQPIVLGGDPKGK--NFLYTNGNSVIIRNIENPA---ISDIYT-----E----HSCAVNVAKYSPS----GFYIASGDI- 78 (248)
Q Consensus 18 ~~v~~~~~s~~~~--~l~~~~~~~v~v~~~~~~~---~~~~~~-----~----~~~~v~~~~~s~~----~~~l~~~~~- 78 (248)
.....|+|.|||. ++++-..|.|++++..... .+..+. + .......++|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4678999999996 6666668999999754221 111111 1 1356789999996 443333221
Q ss_pred -C----------CeEEEEECCCC----------ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC
Q psy16005 79 -S----------GKVRIWDTVNK----------EHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123 (248)
Q Consensus 79 -d----------g~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 123 (248)
+ ..|.-|.+..+ +.+...........-..|+|.|||.+.++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444555421 111111111222346789999999888877654
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.40 E-value=0.022 Score=42.28 Aligned_cols=211 Identities=11% Similarity=0.038 Sum_probs=104.8
Q ss_pred CEEEEeC---CcEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC----CeEEEEECCCCceeeeeeccC
Q psy16005 30 KNFLYTN---GNSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNKEHILKNEFHP 100 (248)
Q Consensus 30 ~~l~~~~---~~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~ 100 (248)
.+++.|+ ...+.+||..+.+-... +.........+. -++++++.|+.+ ..+.+||..+++......++.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 3445554 45788999887653321 111111122222 266777887755 578899998876543333332
Q ss_pred CCCCeeEEEEecCCCEEEEEeCC-------cEEEEEccCCCC----------CceeEeCCCCCEEEEEcC---------C
Q psy16005 101 IGGPIKDIAWSPDNQRMISIVEN-------GAKVSSLPIDYE----------PSSISLDHEHGLVAVGGA---------D 154 (248)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~~~~~~-------~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~ 154 (248)
.......+. -+++.++.++.+ .+.+++...... ........++++++.|+. -
T Consensus 91 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 91 PRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred cccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence 222222222 266666666543 234555432210 011111235566666653 3
Q ss_pred CeEEEEECCceee-eec-ccCC--CceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCCCccccc-CCcCeEEEEEc
Q psy16005 155 SKISIVENGAKVS-SLP-IDYE--PSSISLDHEHGLVAVGGAD-----SKVHIYELNNKSLSPKAELD-HLGPVTDCSFS 224 (248)
Q Consensus 155 ~~i~~~~~~~~~~-~~~-~~~~--~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s 224 (248)
..+..||...... .+. .... -.+++.. ++++++.|+.+ ..+.+||+.+.+-....... .......+.+
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 246 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV- 246 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-
Confidence 4477788433222 121 1111 1222222 56677777653 35899999876432111111 1112233333
Q ss_pred CCCcEEEEEcCC-----CeEEEEECCCC
Q psy16005 225 PSNEYLVASDAH-----RKVVLYRVPDF 247 (248)
Q Consensus 225 ~~~~~l~~~~~d-----~~i~vw~~~~~ 247 (248)
+++.++.|+.+ ..+.+||+.+.
T Consensus 247 -~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 247 -GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp -TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred -CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 67777777643 56888988764
No 318
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.39 E-value=0.014 Score=41.03 Aligned_cols=160 Identities=11% Similarity=-0.080 Sum_probs=87.2
Q ss_pred CcEEEEEccCCeEEEEECCCCce---eeeeeccCC--CCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC----------
Q psy16005 70 GFYIASGDISGKVRIWDTVNKEH---ILKNEFHPI--GGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY---------- 134 (248)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~---------- 134 (248)
...|+....| +++.=....+.. .......+. =..+..++|+|+|...++ .++ .+|..+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G--~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LND--KIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETT--EEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCC--eEEEECCCCCCcccccccc
Confidence 3455555666 555544444331 001111111 246789999998886666 443 355544321
Q ss_pred -CC--------ceeEeCCCCCEEEEEcCCCeEEEEECCc--eeee------e-c-ccCCCceEEEcCCCCEEEEEcCCCc
Q psy16005 135 -EP--------SSISLDHEHGLVAVGGADSKISIVENGA--KVSS------L-P-IDYEPSSISLDHEHGLVAVGGADSK 195 (248)
Q Consensus 135 -~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~------~-~-~~~~~~~~~~s~~~~~l~~~~~d~~ 195 (248)
.+ ..+.+.+++.+.++ .||.|+-++... ...- + . .-..+..+.+.|+|.+.++. |+.
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 12 57788999999888 558888776311 1100 0 0 01245789999999887777 776
Q ss_pred EEEEEcCCCCCCC------cccccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 196 VHIYELNNKSLSP------KAELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 196 v~i~d~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
++-....+..... ..-...-..-+-+.|.|++...+.. ++.+
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 5433222221110 0110222345567799999877666 6643
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.37 E-value=0.024 Score=41.98 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=102.9
Q ss_pred CCCEEEEeC-C----cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC-----CeEEEEECCCCceeee
Q psy16005 28 KGKNFLYTN-G----NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNKEHILK 95 (248)
Q Consensus 28 ~~~~l~~~~-~----~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~ 95 (248)
++..++.|+ + ..+..||+.+.+-... +......-..+.+ ++++++.|+.+ ..+.+||..+.+....
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 344555554 2 4688889877653321 1111111112222 67777887754 3588999988764433
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCc------EEEEEccCCC---------CC-ceeEeCCCCCEEEEEcCC-----
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENG------AKVSSLPIDY---------EP-SSISLDHEHGLVAVGGAD----- 154 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------~~i~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~----- 154 (248)
..++...... +++. -+++.++.++.++ +.++++.... .. ......-++++++.|+.+
T Consensus 93 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 93 ANMRDRRSTL-GAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCCSSCCBSC-EEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTE
T ss_pred CCCCccccce-EEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCc
Confidence 3333222222 2222 2566667666432 2344432211 00 011112255666666542
Q ss_pred --CeEEEEECCceeee-e---cccCCCceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCCCcccccC-CcCeEEEE
Q psy16005 155 --SKISIVENGAKVSS-L---PIDYEPSSISLDHEHGLVAVGGAD-----SKVHIYELNNKSLSPKAELDH-LGPVTDCS 222 (248)
Q Consensus 155 --~~i~~~~~~~~~~~-~---~~~~~~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~-~~~v~~~~ 222 (248)
..+..||....... + +....-.+++ .-++++++.|+.+ ..+.+||+.+.+-........ ......+.
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 249 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA 249 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence 34777884332221 1 1111112222 2356777777754 369999998764321111111 11112222
Q ss_pred EcCCCcEEEEEcCC-----CeEEEEECCCC
Q psy16005 223 FSPSNEYLVASDAH-----RKVVLYRVPDF 247 (248)
Q Consensus 223 ~s~~~~~l~~~~~d-----~~i~vw~~~~~ 247 (248)
+ +++.++.|+.+ ..+.+||+.+.
T Consensus 250 ~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 250 V--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp E--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred E--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 2 67777777654 35888988764
No 320
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.36 E-value=0.025 Score=42.07 Aligned_cols=200 Identities=9% Similarity=0.004 Sum_probs=106.4
Q ss_pred EEeCCCCCEEEEeC--C-------------cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc--cC--CeEE
Q psy16005 23 LGGDPKGKNFLYTN--G-------------NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD--IS--GKVR 83 (248)
Q Consensus 23 ~~~s~~~~~l~~~~--~-------------~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d--g~i~ 83 (248)
--++++|.+|+.+. + ..|+..+++..+... +... . +..|+++++.|+-.. .+ ..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 34688999998875 2 367777877665433 3222 1 236788888888765 33 4555
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCC--------ceeEeCCCCCEEEEEcCC-
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEP--------SSISLDHEHGLVAVGGAD- 154 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~- 154 (248)
.-++...+. ..+..+.. .+++++++.|+..+.+...|+.++....- ....+.|++..++-....
T Consensus 133 ~~~~dGs~~---~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 133 RIRIDGEEK---KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp EEETTSCCC---EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEEEEEEEETTEEEEEEGGG
T ss_pred EEECCCCCe---EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCccceeeecCCEEEEEEcCC
Confidence 556654432 22222222 45688899988887644455554432211 112344666665544322
Q ss_pred -CeEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEc--CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEE
Q psy16005 155 -SKISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGG--ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 155 -~~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 230 (248)
..|..-+ .+.....+.. .. ...++|++.+|..+. ..+.|..-++..... ..+..+ .+. .+++.+.+|
T Consensus 206 ~~~I~~~~ldG~~~~~Lt~-~~--~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r-~~l~~~---~~~--~i~i~~d~I 276 (302)
T 3s25_A 206 DNAIVHVNINNPNPVVLTE-AN--IEHYNVYGSLIFYQRGGDNPALCVVKNDGTGF-KELAKG---EFC--NINVTSQYV 276 (302)
T ss_dssp TTEEEEECSSSCCCEECSC-SC--EEEEEEETTEEEEEECSSSCEEEEEETTSCCC-EEEEES---CEE--EEEECSSEE
T ss_pred CcEEEEEECCCCCeEEEeC-CC--cceEEECCCEEEEEECCCCcEEEEEECCCCcc-EEeeCC---ccc--eEEEeCCEE
Confidence 2344433 3333333321 11 245888899887653 245677777765443 222212 233 345567777
Q ss_pred EEEc-CCCeEEEEE
Q psy16005 231 VASD-AHRKVVLYR 243 (248)
Q Consensus 231 ~~~~-~d~~i~vw~ 243 (248)
+... ..+.|..-+
T Consensus 277 y~td~~~~~i~~~~ 290 (302)
T 3s25_A 277 YFTDFVSNKEYCTS 290 (302)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCeEEEEE
Confidence 6664 334444433
No 321
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0049 Score=46.51 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=76.8
Q ss_pred cEEEEEccCCeEEEEECCCCceeeeeeccCCCCCe-----------eEEEE--ecCCCEEEEEeCCcEEEEEccCCCCCc
Q psy16005 71 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI-----------KDIAW--SPDNQRMISIVENGAKVSSLPIDYEPS 137 (248)
Q Consensus 71 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-----------~~~~~--~~~~~~l~~~~~~~~~i~~~~~~~~~~ 137 (248)
..++.++.||.|.-.|..+|+.............+ ..+.. ..||+..+....+|...|.+..+..+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888899999999999988876655443101111 11223 246777666667777777765432221
Q ss_pred e--eEeC-----------CCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCc--------eEEEc-----CCCCEEEE
Q psy16005 138 S--ISLD-----------HEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPS--------SISLD-----HEHGLVAV 189 (248)
Q Consensus 138 ~--~~~~-----------~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~--------~~~~s-----~~~~~l~~ 189 (248)
. +... ..+..+++++.++.+...| +|+.+..+....... |.... -.+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 1 1111 1456788899999999999 788888876543211 11111 12346777
Q ss_pred EcCCCcEEEEE
Q psy16005 190 GGADSKVHIYE 200 (248)
Q Consensus 190 ~~~d~~v~i~d 200 (248)
+..+..+.+.+
T Consensus 171 g~~~y~v~~~~ 181 (339)
T 2be1_A 171 GKTIFELGIHS 181 (339)
T ss_dssp EEEEEECEECC
T ss_pred ecceEEEEEEC
Confidence 77666666666
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.28 E-value=0.031 Score=41.50 Aligned_cols=214 Identities=12% Similarity=0.042 Sum_probs=106.0
Q ss_pred CCCCCEEEEeC-----CcEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEcc----C-----CeEEEEECCC
Q psy16005 26 DPKGKNFLYTN-----GNSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDI----S-----GKVRIWDTVN 89 (248)
Q Consensus 26 s~~~~~l~~~~-----~~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~iwd~~~ 89 (248)
.-++.+++.|+ -..+.+||..+.+-... +.........+.+ ++++++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 33566666665 24788999877654322 1111111112222 6677777775 2 3588999988
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeC------CcEEEEEccCCC-----------CCceeEeCCCCCEEEEEc
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE------NGAKVSSLPIDY-----------EPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 152 (248)
.+......++..........+ +++.++.++. +.+.+++..... .-..... -++.+++.|+
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 176 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGG 176 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-ECCEEEEEeC
Confidence 764332223222222222222 5666666552 234555543211 0111111 2566777766
Q ss_pred CC-----CeEEEEECCceeeee----cccCCCceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCCCcccccC-CcC
Q psy16005 153 AD-----SKISIVENGAKVSSL----PIDYEPSSISLDHEHGLVAVGGAD-----SKVHIYELNNKSLSPKAELDH-LGP 217 (248)
Q Consensus 153 ~~-----~~i~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~-~~~ 217 (248)
.+ ..+..||........ +....-.+++.. ++++++.|+.+ ..+.+||+.+.+-........ ...
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 54 357778843322221 111111222222 66777777654 469999998764321111111 111
Q ss_pred eEEEEEcCCCcEEEEEcCC-----CeEEEEECCCC
Q psy16005 218 VTDCSFSPSNEYLVASDAH-----RKVVLYRVPDF 247 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d-----~~i~vw~~~~~ 247 (248)
...+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 256 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 122222 56777777643 46788888764
No 323
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.24 E-value=0.036 Score=41.47 Aligned_cols=218 Identities=15% Similarity=0.152 Sum_probs=128.7
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI 101 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (248)
+.-.+|..+.+|.-.+..+.++|+++.+.+..+.- ...|.-=.|-.+. .|+..+ +..|+-|++..... +...+..|
T Consensus 71 sAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~-P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ-PVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCC-CEEEEECC
T ss_pred eeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCC-Cceeeecc
Confidence 45579999988887789999999999888776654 4567666776443 344333 35799999976332 22333333
Q ss_pred ----CCCeeEEEEecCCCEEEEEe---CCc-----EEEEEccCCC----CCceeEe---CCCC-----CEEEEEcC---C
Q psy16005 102 ----GGPIKDIAWSPDNQRMISIV---ENG-----AKVSSLPIDY----EPSSISL---DHEH-----GLVAVGGA---D 154 (248)
Q Consensus 102 ----~~~v~~~~~~~~~~~l~~~~---~~~-----~~i~~~~~~~----~~~~~~~---~~~~-----~~~~~~~~---~ 154 (248)
...|.....+++.+.++..+ .++ +.+|..+... .-...+| ..+| ++++.+.. .
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 34677777788889877665 122 3556554221 0111111 1111 23333322 2
Q ss_pred CeEEEEECCce--------eeeec--cc-----CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 155 SKISIVENGAK--------VSSLP--ID-----YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 155 ~~i~~~~~~~~--------~~~~~--~~-----~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
+++.+.+.+.. .+... .+ .-+.++..|+....+..-+.-|.+++||+.++.++..-.. ....|.
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI-S~d~iF 305 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI-SGETIF 305 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc-CCCceE
Confidence 57888773222 11111 11 1145778888888888889999999999999998655442 234454
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.-+-..+..-++.....|.|.--.+
T Consensus 306 ~ta~~~~~~Gi~~Vnr~GqVl~v~v 330 (365)
T 2xzh_A 306 VTAPHEATAGIIGVNRKGQVLSVCV 330 (365)
T ss_dssp EEEEEGGGTEEEEEETTCEEEEEEE
T ss_pred EecccCCCCcEEEEcCCCEEEEEEE
Confidence 4444444334555556666554433
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.20 E-value=0.045 Score=41.71 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=37.1
Q ss_pred cceEEEEECcCCc-EEEEEccCCeEEEEECCCCceeeeeec----cCCCCCeeEEEEecC---CCEEEEE
Q psy16005 59 CAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEHILKNEF----HPIGGPIKDIAWSPD---NQRMISI 120 (248)
Q Consensus 59 ~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~ 120 (248)
.....++|.|+|+ +++ +...|.|++++...........+ .........++++|+ +..|+.+
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 3467999999998 555 45679999998542211000111 112346789999996 4555444
No 325
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.16 E-value=0.12 Score=45.94 Aligned_cols=213 Identities=13% Similarity=0.116 Sum_probs=113.8
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeee-ecCCcceEEEEECcC------CcEEEEEcc-CCeEEEEECCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPS------GFYIASGDI-SGKVRIWDTVN 89 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~-~~~~~~v~~~~~s~~------~~~l~~~~~-dg~i~iwd~~~ 89 (248)
..|...+.+. ..++.+.++.+..+.++.++..... ..-...|.|+++.|. +++++.|.. |++++|+++.+
T Consensus 514 ~~I~~As~n~--~~vvva~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCCEEEECS--SEEEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEEeCC--CEEEEEECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 3455555543 3455555677877777665432211 133568999999863 478999986 99999999987
Q ss_pred CceeeeeeccCCCCCeeEEEEec--CCCEEEEEeCCcEEE-EEccC-------------CCCCcee-EeCCCCCEEEEEc
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSP--DNQRMISIVENGAKV-SSLPI-------------DYEPSSI-SLDHEHGLVAVGG 152 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~i-~~~~~-------------~~~~~~~-~~~~~~~~~~~~~ 152 (248)
.+.+....+.. ...+.++.+.. ...+|..+-.+|..+ +.++. +..+..+ .+...+..-+.+.
T Consensus 592 l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~ 670 (1158)
T 3ei3_A 592 FELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFAC 670 (1158)
T ss_dssp CCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEE
T ss_pred CCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEE
Confidence 66554444432 23445554432 335777777888632 22221 1112222 2222333222333
Q ss_pred CCCeEEEEECCceeeeecccC-CCc-eEEEcCC--CCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc
Q psy16005 153 ADSKISIVENGAKVSSLPIDY-EPS-SISLDHE--HGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 153 ~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~s~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 228 (248)
.+....++.....+...+... .+. ...|+.. ..-++..+ ++.++|..+...........+-...++.++++|+.+
T Consensus 671 s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~ 749 (1158)
T 3ei3_A 671 SDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQ 749 (1158)
T ss_dssp SSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGT
T ss_pred CCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCC
Confidence 344444444222222222222 222 2334322 12344444 445999988654332222223456789999999888
Q ss_pred EEEEEc
Q psy16005 229 YLVASD 234 (248)
Q Consensus 229 ~l~~~~ 234 (248)
.++.+.
T Consensus 750 ~~~v~~ 755 (1158)
T 3ei3_A 750 CFGVLS 755 (1158)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 766554
No 326
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.15 E-value=0.051 Score=41.42 Aligned_cols=182 Identities=15% Similarity=0.104 Sum_probs=97.8
Q ss_pred cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec---cCCCCCeeEEEEecC---CCEEEEEeC---------C
Q psy16005 59 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF---HPIGGPIKDIAWSPD---NQRMISIVE---------N 123 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~---------~ 123 (248)
.....++|.|+|+++++ ..+|.|++++. +++ .....+ .........++++|+ +..|+++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 44678999999985555 56699999973 443 111111 112356889999997 455544432 1
Q ss_pred cEEEEEccC-------------------CCCCceeEeCCCCCEEEEEcC-------------CCeEEEEE-CCce-----
Q psy16005 124 GAKVSSLPI-------------------DYEPSSISLDHEHGLVAVGGA-------------DSKISIVE-NGAK----- 165 (248)
Q Consensus 124 ~~~i~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~-~~~~----- 165 (248)
.+..++... ......+.+.|+|.++++.+. .+.|.-++ .++.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 222222111 112456888999987776432 24555555 2320
Q ss_pred ---eeeec-ccCCCceEEEcC-CCCEEEEEcCCC---cEEEEEcCCCCC----------------CCcccc-cCCcCeEE
Q psy16005 166 ---VSSLP-IDYEPSSISLDH-EHGLVAVGGADS---KVHIYELNNKSL----------------SPKAEL-DHLGPVTD 220 (248)
Q Consensus 166 ---~~~~~-~~~~~~~~~~s~-~~~~l~~~~~d~---~v~i~d~~~~~~----------------~~~~~~-~~~~~v~~ 220 (248)
...+. ....+..++|+| ++.++++-...+ .|.+.. .+.. ...... .....+..
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 11111 123467899999 666555433222 244332 2210 011111 11235778
Q ss_pred EEEc-------CCCcEEEEEcCCCeEEEEECC
Q psy16005 221 CSFS-------PSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 221 ~~~s-------~~~~~l~~~~~d~~i~vw~~~ 245 (248)
++|. .+|.++++.-..+.|...+++
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~ 295 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFG 295 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEEC
Confidence 8883 467776666666777777765
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.12 E-value=0.062 Score=41.92 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=130.1
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI 101 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (248)
+.-.+|..+.+|.-.+..+.++|+++.+.+..+.-. ..|.-=.|-.+. .|+..+ +..|+-|++..... +...+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~-P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ-PVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCC-CEEEEECC
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCC-chhheecc
Confidence 556789888888878899999999998887766543 455555565433 444433 45899999975332 22333333
Q ss_pred ----CCCeeEEEEecCCCEEEEEe---CCc-----EEEEEccCCCC----CceeEe---CCCC-----CEEEEEcC---C
Q psy16005 102 ----GGPIKDIAWSPDNQRMISIV---ENG-----AKVSSLPIDYE----PSSISL---DHEH-----GLVAVGGA---D 154 (248)
Q Consensus 102 ----~~~v~~~~~~~~~~~l~~~~---~~~-----~~i~~~~~~~~----~~~~~~---~~~~-----~~~~~~~~---~ 154 (248)
...|.....+++.+.++..+ .++ +.+|..+.... -...+| ..+| .++..+.. .
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 35677777888999887665 222 35565542210 111111 1111 23333333 3
Q ss_pred CeEEEEECCce--------eeeecccC-------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 155 SKISIVENGAK--------VSSLPIDY-------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 155 ~~i~~~~~~~~--------~~~~~~~~-------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
+++.+.+.+.. ........ -+.++..|+....+..-+.-|.+++||+.++.++..-.. ....|.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI-s~~~iF 304 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI-SGETIF 304 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc-cCCceE
Confidence 67888874322 11111111 146788888888888889999999999999988655442 334555
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.-+-.....-++.....|.|.--.+
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEE
T ss_pred EecccCCCCcEEEEccCceEEEEEE
Confidence 5454444444555556666654443
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.07 E-value=0.06 Score=40.85 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=41.6
Q ss_pred CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec----cCCCCCeeEEEEecC---CCEEEE
Q psy16005 58 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF----HPIGGPIKDIAWSPD---NQRMIS 119 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~ 119 (248)
-.....++|.|+|+++++--..|.|++++..+++......+ .........|+++|+ +..|+.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 34568999999999777765589999998765553221111 123457889999995 344444
No 329
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.00 E-value=0.19 Score=45.36 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=109.2
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI 101 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (248)
+.-.+|..+.+|.-.+.++.|+|+++.+.+..+.- ..+|.-=.|-.+. .|+..+ +..|.-|++.... .+...+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s-~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES-QPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCC-ccHHHHhcc
Confidence 34468888888887889999999998777665543 4456655665433 343333 4579999997532 222333333
Q ss_pred ----CCCeeEEEEecCCCEEEEEeC---C-----cEEEEEccCCCC---------CceeEe--CC-CCCEEEEEcC---C
Q psy16005 102 ----GGPIKDIAWSPDNQRMISIVE---N-----GAKVSSLPIDYE---------PSSISL--DH-EHGLVAVGGA---D 154 (248)
Q Consensus 102 ----~~~v~~~~~~~~~~~l~~~~~---~-----~~~i~~~~~~~~---------~~~~~~--~~-~~~~~~~~~~---~ 154 (248)
...|....-+++.+.++..+- + .+.++....... -..+.. .+ ...++..+.. .
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777778888888876652 1 235565532211 000111 11 1223332222 3
Q ss_pred CeEEEEECCce-----e---eeecccC-------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc
Q psy16005 155 SKISIVENGAK-----V---SSLPIDY-------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 155 ~~i~~~~~~~~-----~---~~~~~~~-------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 210 (248)
+++.+.+.+.. . ....... -+.++..++....+..-+.-|.+++||+.++..+..-
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 67887773322 0 0111111 1456778887788888889999999999999876443
No 330
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.022 Score=43.00 Aligned_cols=177 Identities=8% Similarity=-0.033 Sum_probs=85.9
Q ss_pred CCEEEEeCCcEEEEEecCCCceeeeeecC-CcceEEEEEC--c-CCcEEEEE-ccCCeEEEEECCCCceeeeeeccC--C
Q psy16005 29 GKNFLYTNGNSVIIRNIENPAISDIYTEH-SCAVNVAKYS--P-SGFYIASG-DISGKVRIWDTVNKEHILKNEFHP--I 101 (248)
Q Consensus 29 ~~~l~~~~~~~v~v~~~~~~~~~~~~~~~-~~~v~~~~~s--~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~--~ 101 (248)
+..++.+.||.|+-.|..+|+..-.+... ..++....-. + ++..++.. +.||.+..++..+|........+. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 33444445999999999999888776543 1222221100 1 23334443 689999999988875443332221 1
Q ss_pred CCCeeE------------------EEEecCCCEEEEEeCCcEEEEEccCCCCCc--------eeEeC-----CCCCEEEE
Q psy16005 102 GGPIKD------------------IAWSPDNQRMISIVENGAKVSSLPIDYEPS--------SISLD-----HEHGLVAV 150 (248)
Q Consensus 102 ~~~v~~------------------~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--------~~~~~-----~~~~~~~~ 150 (248)
..++.. +.=+.+++..+.-...|..+|......... +.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111211 111223444444446677888887654321 11110 11345555
Q ss_pred EcCCCeEEEEE-CCceeeeeccc----CCCc-----eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 151 GGADSKISIVE-NGAKVSSLPID----YEPS-----SISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 151 ~~~~~~i~~~~-~~~~~~~~~~~----~~~~-----~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
+..+..+.+.+ +++ +...... ..+. .-..+.|+.+ ++++.||.|.-+|..+++..
T Consensus 171 g~~~y~v~~~~~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 171 GKTIFELGIHSYDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEECEECCTTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred ecceEEEEEECCCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 55555555544 221 2111100 0000 0011234555 44677888888888777653
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.85 E-value=0.19 Score=45.25 Aligned_cols=204 Identities=12% Similarity=0.116 Sum_probs=118.8
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCE
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (248)
+..|.|.|+.++..+.... -.--+.-.+|..+.+|.-. ..++.|+|+++.+.+....+ ..+|.--.|- +.+.
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWi-s~~~ 118 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWI-SLNT 118 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEec-CCCe
Confidence 3478888888765442211 1122344788877777654 67999999998876644444 3467666776 3567
Q ss_pred EEEEeCCcEEEEEccCCCC---------------CceeEeCCCCCEEEEEc-------CCCeEEEEECCcee-eeecccC
Q psy16005 117 MISIVENGAKVSSLPIDYE---------------PSSISLDHEHGLVAVGG-------ADSKISIVENGAKV-SSLPIDY 173 (248)
Q Consensus 117 l~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~-~~~~~~~ 173 (248)
|+..++..+.-|++..+.. +.....+++.+.++..+ -.|.+.+|...+.+ +.+..+.
T Consensus 119 l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha 198 (1630)
T 1xi4_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA 198 (1630)
T ss_pred eEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhH
Confidence 8888888899999854322 23344567777665432 34677777733322 2222111
Q ss_pred C-CceEEE--cC-CCCEEEEEcC---CCcEEEEEcCCC---CCC------Cccccc--CCcCeEEEEEcCCCcEEEEEcC
Q psy16005 174 E-PSSISL--DH-EHGLVAVGGA---DSKVHIYELNNK---SLS------PKAELD--HLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 174 ~-~~~~~~--s~-~~~~l~~~~~---d~~v~i~d~~~~---~~~------~~~~~~--~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
. ...+.. ++ ....++.+.. .+.++|.++... ... .....+ -..-..++..|+.-..++..+.
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk 278 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec
Confidence 1 011111 11 1223333322 267899888543 110 011111 1334566788888888888899
Q ss_pred CCeEEEEECCCCC
Q psy16005 236 HRKVVLYRVPDFE 248 (248)
Q Consensus 236 d~~i~vw~~~~~~ 248 (248)
-|.+.+||+.|+.
T Consensus 279 ~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 279 YGYIHLYDLETGT 291 (1630)
T ss_pred CceEEEEecccch
Confidence 9999999999873
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.81 E-value=0.1 Score=39.52 Aligned_cols=92 Identities=9% Similarity=0.098 Sum_probs=47.7
Q ss_pred CCCEEEEeC--CcEEEEEecCC--Cceee--eee-cCCcceEEEEECcCCcEEEEEcc-C---------CeEEEEECCCC
Q psy16005 28 KGKNFLYTN--GNSVIIRNIEN--PAISD--IYT-EHSCAVNVAKYSPSGFYIASGDI-S---------GKVRIWDTVNK 90 (248)
Q Consensus 28 ~~~~l~~~~--~~~v~v~~~~~--~~~~~--~~~-~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~iwd~~~~ 90 (248)
++.+++.|+ .+.+.++|..+ .+-.. .+. .......++.+ ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 566666665 56899999864 22211 111 11111122222 5677777776 2 46889999887
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVE 122 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 122 (248)
+......+.. .......+...+++.++.++.
T Consensus 97 ~W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~ 127 (357)
T 2uvk_A 97 SWVKLMSHAP-MGMAGHVTFVHNGKAYVTGGV 127 (357)
T ss_dssp EEEECSCCCS-SCCSSEEEEEETTEEEEEECC
T ss_pred cEEECCCCCC-cccccceEEEECCEEEEEeCc
Confidence 6443222221 111112122256777777764
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.79 E-value=0.13 Score=40.58 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=40.4
Q ss_pred cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccC------CCCCeeEEEEecC---CCEEEEEe
Q psy16005 59 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP------IGGPIKDIAWSPD---NQRMISIV 121 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~ 121 (248)
....+++|.|+|+++++-...+.|++++..++.......+.. .......|+|+|+ +..|+++.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 356799999999977775544578888866554322222221 2356779999996 55555443
No 334
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.77 E-value=0.16 Score=41.03 Aligned_cols=208 Identities=10% Similarity=0.043 Sum_probs=120.9
Q ss_pred CcEEEEEecCCCceeeeeecC-------------------------CcceE--EEEECc---CCcEEEEEc-cCCeEEEE
Q psy16005 37 GNSVIIRNIENPAISDIYTEH-------------------------SCAVN--VAKYSP---SGFYIASGD-ISGKVRIW 85 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~-------------------------~~~v~--~~~~s~---~~~~l~~~~-~dg~i~iw 85 (248)
.|.++|+-+.+++.+..+.-. .+... .+++.. ||++|+.-. ....|...
T Consensus 79 sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan~RvAri 158 (638)
T 3sbq_A 79 QGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKANSRVARI 158 (638)
T ss_dssp GCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTTTEEEEE
T ss_pred CceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCCcceEEE
Confidence 789999998888766544210 11111 233322 567777755 45677777
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEe--cCCCEEEEEeCCcE-----------------------------EEEEccCCC
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWS--PDNQRMISIVENGA-----------------------------KVSSLPIDY 134 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~~~-----------------------------~i~~~~~~~ 134 (248)
+++.-+.-....++ ....+..+.|. |+..+++..++..+ ..|.+..+.
T Consensus 159 ~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Qv~v~g 237 (638)
T 3sbq_A 159 RLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQVIVDG 237 (638)
T ss_dssp ETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEEEEESS
T ss_pred ECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEEEEcCC
Confidence 87776643333333 34567777775 56677777663221 123333333
Q ss_pred CCceeEeCCCCCEEEEEcCCC----------------------------------------eEEEEECCc-------eee
Q psy16005 135 EPSSISLDHEHGLVAVGGADS----------------------------------------KISIVENGA-------KVS 167 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------~i~~~~~~~-------~~~ 167 (248)
........+++.+.++.+.+. .+.+.|..+ ...
T Consensus 238 nld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~ 317 (638)
T 3sbq_A 238 NLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTR 317 (638)
T ss_dssp CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEE
T ss_pred ChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccCCceEE
Confidence 333444455565555443211 233344211 233
Q ss_pred eecccCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCCC------CCC-----CcccccCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 168 SLPIDYEPSSISLDHEHGLVAVGGA-DSKVHIYELNNK------SLS-----PKAELDHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 168 ~~~~~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~------~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
.++....+..+..+|||+++++++. +.++.++|.+.- +.. ......-.-.....+|.++|....+.--
T Consensus 318 ~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfi 397 (638)
T 3sbq_A 318 YVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFI 397 (638)
T ss_dssp EEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred EEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeee
Confidence 3455666788999999998888764 788999999742 110 0011122345678899999955555567
Q ss_pred CCeEEEEECC
Q psy16005 236 HRKVVLYRVP 245 (248)
Q Consensus 236 d~~i~vw~~~ 245 (248)
|..|.-|++.
T Consensus 398 dSqvvkWni~ 407 (638)
T 3sbq_A 398 DSQVVKWNME 407 (638)
T ss_dssp TTEEEEEEHH
T ss_pred cceEEEEecc
Confidence 9999999975
No 335
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.55 E-value=0.16 Score=38.42 Aligned_cols=139 Identities=11% Similarity=0.203 Sum_probs=84.1
Q ss_pred CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecC----CCE--EEEEeCCcEEEEEccCCCCCceeEeCC
Q psy16005 70 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD----NQR--MISIVENGAKVSSLPIDYEPSSISLDH 143 (248)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~~~~~~~~~i~~~~~~~~~~~~~~~~ 143 (248)
..+++.....+-+.+||+ +++.+ ..+.. +.++.+..-|+ |+. ++
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l--~~~~~--g~~nnVD~r~~~~l~g~~~dla------------------------- 89 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKML--HSYNT--GKLNNVDIRYDFPLNGKKVDIA------------------------- 89 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEE--EEECC--SCEEEEEEEEEEEETTEEEEEE-------------------------
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEE--EEccC--CCcccEEEecccccCCceEeEE-------------------------
Confidence 355666667789999999 66654 23332 55666666652 111 11
Q ss_pred CCCEEEEEcC--CCeEEEEEC---Cceeeee-----c--cc-CCCceEEE--cCC-CC-EEEEEcCCCcEEEEEcCC---
Q psy16005 144 EHGLVAVGGA--DSKISIVEN---GAKVSSL-----P--ID-YEPSSISL--DHE-HG-LVAVGGADSKVHIYELNN--- 203 (248)
Q Consensus 144 ~~~~~~~~~~--~~~i~~~~~---~~~~~~~-----~--~~-~~~~~~~~--s~~-~~-~l~~~~~d~~v~i~d~~~--- 203 (248)
+++... +++|.+|+. ...+..+ + .. ..+..+++ +|. ++ ++++...+|.+..|++..
T Consensus 90 ----~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~ 165 (355)
T 3amr_A 90 ----AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKN 165 (355)
T ss_dssp ----EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT
T ss_pred ----EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCC
Confidence 222223 456666641 1223333 1 11 44566777 774 44 688888899999999832
Q ss_pred C----CCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 204 K----SLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 204 ~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
+ +.+..+. ..+.+..+...+....|+.+-++.-|..++.
T Consensus 166 g~~~~~lVR~f~--lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da 208 (355)
T 3amr_A 166 GYISGKKVRAFK--MNSQTEGMAADDEYGRLYIAEEDEAIWKFSA 208 (355)
T ss_dssp SCEEEEEEEEEE--CSSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred CcccceEEEEec--CCCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence 2 2333333 3457889999998899999988866655554
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.54 E-value=0.15 Score=37.88 Aligned_cols=206 Identities=8% Similarity=0.049 Sum_probs=99.5
Q ss_pred CcEEEEEecCCCceee-eeecCCcceEEEEECcCCcEEEEEcc----C-------CeEEEEECCCCceeeeeeccCCCCC
Q psy16005 37 GNSVIIRNIENPAISD-IYTEHSCAVNVAKYSPSGFYIASGDI----S-------GKVRIWDTVNKEHILKNEFHPIGGP 104 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~~~~~~~~~~ 104 (248)
+..+.+||..+.+-.. .+..............+++.++.|+. + ..+..||..+++......++.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 91 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL 91 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence 3688999988876432 11111122233333457778888773 1 1277889888764322222211111
Q ss_pred eeEEEEecCCCEEEEEeCC---------cEEEEEccCCC----------CCceeEeCCCCCEEEEEcC-C-----CeEEE
Q psy16005 105 IKDIAWSPDNQRMISIVEN---------GAKVSSLPIDY----------EPSSISLDHEHGLVAVGGA-D-----SKISI 159 (248)
Q Consensus 105 v~~~~~~~~~~~l~~~~~~---------~~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~-----~~i~~ 159 (248)
.+++.. +++.++.++.+ .+.+++..... .....+...++++++.|+. + ..+..
T Consensus 92 -~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 169 (315)
T 4asc_A 92 -FGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCV 169 (315)
T ss_dssp -CEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEE
T ss_pred -eeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEE
Confidence 122222 56666666521 13445543211 0111122245567777765 2 35778
Q ss_pred EECCceeeee-c-ccCC--CceEEEcCCCCEEEEEcCCC-----cEEEEEcCCCCCCCcccccC-CcCeEEEEEcCCCcE
Q psy16005 160 VENGAKVSSL-P-IDYE--PSSISLDHEHGLVAVGGADS-----KVHIYELNNKSLSPKAELDH-LGPVTDCSFSPSNEY 229 (248)
Q Consensus 160 ~~~~~~~~~~-~-~~~~--~~~~~~s~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 229 (248)
||........ . .+.+ -.+++ .-++++++.|+.++ .+.+||+.+.+-........ ......+.+ +++.
T Consensus 170 yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l 246 (315)
T 4asc_A 170 YDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTL 246 (315)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred EeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEE
Confidence 8844332221 1 1111 12222 23667777777544 58899998764321111111 111122223 5677
Q ss_pred EEEEcCC--------------CeEEEEECCCC
Q psy16005 230 LVASDAH--------------RKVVLYRVPDF 247 (248)
Q Consensus 230 l~~~~~d--------------~~i~vw~~~~~ 247 (248)
++.|+.+ ..+.+||+++.
T Consensus 247 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 247 YAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EEECCccccCcCCccccccccCcEEEecCCCC
Confidence 7777653 24678887664
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.26 E-value=0.44 Score=40.26 Aligned_cols=217 Identities=11% Similarity=0.107 Sum_probs=121.4
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeee-ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
...|.++.-..+|...+...+| +..||-...+..... ......|.++.-..++. |..|+.+| +..||..+.+...
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~- 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQ- 96 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECC-
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEEC-
Confidence 4579999999998766655555 556663221111100 11235688887776664 55555555 7889987764321
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC--------------CCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID--------------YEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
........|.++.. .++ .|..+..+++..++.... ..+.++....++.+.+ ++.+ -+..++
T Consensus 97 -~~~~~~~~i~~i~~-~~g-~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~ 171 (758)
T 3ott_A 97 -PETDFPTDVRTMAL-QGD-TLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYI 171 (758)
T ss_dssp -CSCCCCSCEEEEEE-ETT-EEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEE
T ss_pred -cccCCCceEEEEEe-cCC-cEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCc
Confidence 11112335666654 355 455566667766664321 1234555566776665 3443 467777
Q ss_pred C-Cceeeeeccc-------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 162 N-GAKVSSLPID-------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 162 ~-~~~~~~~~~~-------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
. ......+... ..+.++...+++..|.+|+. +-+..+|..+++...... .....|.++...++|.+.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lWigT 249 (758)
T 3ott_A 172 PSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA-FHNNSIKSLALDGNGDLLAGT 249 (758)
T ss_dssp TTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE-EEEEEEEEEEECTTCCEEEEE
T ss_pred cCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC-CCCCeEEEEEEcCCCCEEEEe
Confidence 3 2333333221 12566777777665555654 458889987665321111 123458888888888766544
Q ss_pred cCCCeEEEEECCC
Q psy16005 234 DAHRKVVLYRVPD 246 (248)
Q Consensus 234 ~~d~~i~vw~~~~ 246 (248)
.+ -+.+++..+
T Consensus 250 -~~-Gl~~~~~~~ 260 (758)
T 3ott_A 250 -DN-GLYVYHNDT 260 (758)
T ss_dssp -TT-EEEEECCTT
T ss_pred -CC-ceeEEecCC
Confidence 33 466776544
No 338
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.04 E-value=0.29 Score=36.13 Aligned_cols=173 Identities=9% Similarity=0.020 Sum_probs=87.1
Q ss_pred CCCEEEEeC-C----cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC------CeEEEEECCCCceee
Q psy16005 28 KGKNFLYTN-G----NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS------GKVRIWDTVNKEHIL 94 (248)
Q Consensus 28 ~~~~l~~~~-~----~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~ 94 (248)
++..++.|+ + ..+.+||..+.+-... +.........+.+ ++++++.|+.+ ..+.+||..+.+...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 566666665 2 5788999887654322 1111111222222 67777887765 458899998876433
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEe----------CCcEEEEEccCCCC----------CceeEeCCCCCEEEEEcCC
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIV----------ENGAKVSSLPIDYE----------PSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 154 (248)
...++...... +++. -+++.++.++ .+.+.++++..... .......-++++++.|+.+
T Consensus 133 ~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 210 (306)
T 3ii7_A 133 KPSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQN 210 (306)
T ss_dssp ECCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CCCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCC
Confidence 22232212222 2222 2566666664 22245555432210 0111112255677776643
Q ss_pred -----CeEEEEECCceeeee----cccCCCceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCC
Q psy16005 155 -----SKISIVENGAKVSSL----PIDYEPSSISLDHEHGLVAVGGAD-----SKVHIYELNNKS 205 (248)
Q Consensus 155 -----~~i~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~ 205 (248)
..+..||........ +....-..++.. ++++++.|+.+ ..+.+||+.+.+
T Consensus 211 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 356778843322221 111111222222 66788888754 468899988765
No 339
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=95.83 E-value=0.7 Score=38.83 Aligned_cols=223 Identities=10% Similarity=0.024 Sum_probs=111.2
Q ss_pred EEE-eCCCCCEEEEe-C----C-cEEEEEecCCCceeee-ee-cCCc------ceEEEEECcCCcEEEEE----------
Q psy16005 22 VLG-GDPKGKNFLYT-N----G-NSVIIRNIENPAISDI-YT-EHSC------AVNVAKYSPSGFYIASG---------- 76 (248)
Q Consensus 22 ~~~-~s~~~~~l~~~-~----~-~~v~v~~~~~~~~~~~-~~-~~~~------~v~~~~~s~~~~~l~~~---------- 76 (248)
.+. ++|++++++.+ + | ..++++|+.+++.+.. +. .-+. ....++|..+...+++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS 212 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence 444 89999998876 2 2 3899999999887642 22 0001 11344776444444432
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCe-eEEEEecCCCE-----EEEEeCC--cEEEEEccCC---CCCcee------
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPI-KDIAWSPDNQR-----MISIVEN--GAKVSSLPID---YEPSSI------ 139 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~-----l~~~~~~--~~~i~~~~~~---~~~~~~------ 139 (248)
+....|+.|.+.+....-...+.+....+ .....++++++ +++.+.+ ...+|-++.. .....+
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA 292 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence 12246899988765432223333322332 33445666663 3333322 2344544322 111111
Q ss_pred --EeCCCCCEEEEE----------cCCCeEEEEECCc---------eeee-ecc--cCCCceEEEcCCCCEEEEEcCCC-
Q psy16005 140 --SLDHEHGLVAVG----------GADSKISIVENGA---------KVSS-LPI--DYEPSSISLDHEHGLVAVGGADS- 194 (248)
Q Consensus 140 --~~~~~~~~~~~~----------~~~~~i~~~~~~~---------~~~~-~~~--~~~~~~~~~s~~~~~l~~~~~d~- 194 (248)
....++.+++.. ...+.|...+... .... +.. ...+..+.+..+ .++++...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~ 371 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV 371 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence 223344444422 1345566666211 1111 222 223456777765 4666666665
Q ss_pred -cEEEEEcCCCC-CCCc-ccccCCcCeEEEEEcCCCcEEE-EEcC---CCeEEEEECC
Q psy16005 195 -KVHIYELNNKS-LSPK-AELDHLGPVTDCSFSPSNEYLV-ASDA---HRKVVLYRVP 245 (248)
Q Consensus 195 -~v~i~d~~~~~-~~~~-~~~~~~~~v~~~~~s~~~~~l~-~~~~---d~~i~vw~~~ 245 (248)
.+.++|+.+++ .... ...+..+.+.....++++..++ +.++ -+.+..+|+.
T Consensus 372 ~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 372 AKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 47778876664 2222 2222235677777777775443 3332 3567777654
No 340
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.58 E-value=0.45 Score=34.92 Aligned_cols=174 Identities=10% Similarity=0.037 Sum_probs=87.0
Q ss_pred CCCEEEEeC-C-----cEEEEEecCCCc---eeee--eecCCcceEEEEECcCCcEEEEEccC-----CeEEEEECCCCc
Q psy16005 28 KGKNFLYTN-G-----NSVIIRNIENPA---ISDI--YTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNKE 91 (248)
Q Consensus 28 ~~~~l~~~~-~-----~~v~v~~~~~~~---~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 91 (248)
++..++.|+ + +.+.+||..+.+ -... +........++.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 566666664 2 468899988765 2221 1111111222222 67777777654 368899998876
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCC------cEEEEEccCCC---------C-CceeEeCCCCCEEEEEcCC-
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVEN------GAKVSSLPIDY---------E-PSSISLDHEHGLVAVGGAD- 154 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------~~~i~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~- 154 (248)
......++........+. -+++.++.++.+ .+.++++.... . ........++++++.|+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCC
Confidence 543333332222222222 266666666533 24555543211 0 0111122256677777654
Q ss_pred ----CeEEEEECCceee-eec-ccCC-CceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCC
Q psy16005 155 ----SKISIVENGAKVS-SLP-IDYE-PSSISLDHEHGLVAVGGAD-----SKVHIYELNNKS 205 (248)
Q Consensus 155 ----~~i~~~~~~~~~~-~~~-~~~~-~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~ 205 (248)
..+..||...... .+. .... ....+..-++++++.|+.+ ..+.+||+++.+
T Consensus 218 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 4578888433222 221 1111 1111222366777777755 357888887654
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.47 E-value=0.95 Score=37.93 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=37.1
Q ss_pred CCCCEEEEeC-C----cEEEEEecCCCceeeee-e-------cCCcceEEEEECcCCcEEEEEccCC------eEEEEEC
Q psy16005 27 PKGKNFLYTN-G----NSVIIRNIENPAISDIY-T-------EHSCAVNVAKYSPSGFYIASGDISG------KVRIWDT 87 (248)
Q Consensus 27 ~~~~~l~~~~-~----~~v~v~~~~~~~~~~~~-~-------~~~~~v~~~~~s~~~~~l~~~~~dg------~i~iwd~ 87 (248)
.++..++.|+ + +.+.+||..+++-...- . .....-.++.+..+++.++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 4566666665 2 46888898776543322 1 1111122333322677778877542 4778888
Q ss_pred CCCce
Q psy16005 88 VNKEH 92 (248)
Q Consensus 88 ~~~~~ 92 (248)
.+.+.
T Consensus 476 ~t~~W 480 (695)
T 2zwa_A 476 KTREW 480 (695)
T ss_dssp TTTEE
T ss_pred CCCcE
Confidence 77654
No 342
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.39 E-value=0.54 Score=34.56 Aligned_cols=174 Identities=13% Similarity=0.138 Sum_probs=86.4
Q ss_pred CCCEEEEeC-C-----cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccCC-----eEEEEECCCCceee
Q psy16005 28 KGKNFLYTN-G-----NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDISG-----KVRIWDTVNKEHIL 94 (248)
Q Consensus 28 ~~~~l~~~~-~-----~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 94 (248)
++..++.|+ + ..+.+||..+.+-... +........++.+ +++.++.|+.++ .+.+||+.+.+...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 566666664 2 3688899877653321 1111111222222 667777777553 57889988776443
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeC--------CcEEEEEccCCC---------C-CceeEeCCCCCEEEEEcCC--
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVE--------NGAKVSSLPIDY---------E-PSSISLDHEHGLVAVGGAD-- 154 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------~~~~i~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~-- 154 (248)
...++...... +++. -+++.++.++. +.+.++++.... . ........++++++.|+.+
T Consensus 139 ~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 216 (302)
T 2xn4_A 139 VAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGP 216 (302)
T ss_dssp ECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSS
T ss_pred cCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCC
Confidence 32332222222 2222 25666666542 224455543211 0 0011112256677777654
Q ss_pred ---CeEEEEECCceee-eec-ccCC-CceEEEcCCCCEEEEEcCCC-----cEEEEEcCCCC
Q psy16005 155 ---SKISIVENGAKVS-SLP-IDYE-PSSISLDHEHGLVAVGGADS-----KVHIYELNNKS 205 (248)
Q Consensus 155 ---~~i~~~~~~~~~~-~~~-~~~~-~~~~~~s~~~~~l~~~~~d~-----~v~i~d~~~~~ 205 (248)
..+..||...... .+. .... ....+...++++++.|+.++ .+.+||+.+.+
T Consensus 217 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 217 LVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred cccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 3577888433222 121 1111 11112223667777877553 48999998765
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.30 E-value=1.1 Score=37.76 Aligned_cols=221 Identities=14% Similarity=0.002 Sum_probs=123.2
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCce--eeeee-------cCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI--SDIYT-------EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~--~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
..|.++.-.++|.+.+...+ -+..++..+++. ...+. .....|.++.-.+++++-+ |+ ++-+..+|..
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~ 400 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYA 400 (758)
T ss_dssp CBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETT
T ss_pred ceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcC
Confidence 35778888888887766544 466666554321 11111 1124588888887777444 44 4568889988
Q ss_pred CCceeeeeeccC----CCCCeeEEEEecCCCEEEEEeCCcEEEEEccC----------------------CCCCceeEeC
Q psy16005 89 NKEHILKNEFHP----IGGPIKDIAWSPDNQRMISIVENGAKVSSLPI----------------------DYEPSSISLD 142 (248)
Q Consensus 89 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~----------------------~~~~~~~~~~ 142 (248)
+++......... ....|.++...++++..+....+|+.+++... ...+.++..+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 480 (758)
T 3ott_A 401 TRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPD 480 (758)
T ss_dssp TTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEEC
T ss_pred CCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEc
Confidence 765422111011 12457888887777665554456777666331 0124556677
Q ss_pred CCCCEEEEEcCCCeEEEEECC-ceeeeecc-----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-CC
Q psy16005 143 HEHGLVAVGGADSKISIVENG-AKVSSLPI-----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HL 215 (248)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~ 215 (248)
+++++.+.++..+-+..+|.. .....+.. ...+.++..+.+|.+.+. +..| +..||..+++.......+ ..
T Consensus 481 ~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~gl~~ 558 (758)
T 3ott_A 481 NEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSISFGSFSN 558 (758)
T ss_dssp TTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBCCCCC---
T ss_pred CCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEecccCCCc
Confidence 788877644444557778832 23333321 234567777888875544 4445 888888766543211111 23
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..|.++... +|...++ +..| |..+|..+
T Consensus 559 ~~i~~i~~~-~g~lWi~-t~~G-l~~~~~~~ 586 (758)
T 3ott_A 559 NEILSMTCV-KNSIWVS-TTNG-LWIIDRKT 586 (758)
T ss_dssp CCEEEEEEE-TTEEEEE-ESSC-EEEEETTT
T ss_pred cceEEEEEC-CCCEEEE-CCCC-eEEEcCCC
Confidence 457777764 6654444 4444 55666554
No 344
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.25 E-value=0.62 Score=34.42 Aligned_cols=172 Identities=13% Similarity=0.121 Sum_probs=85.8
Q ss_pred CCCEEEEeCC----------cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC-----CeEEEEECCCC
Q psy16005 28 KGKNFLYTNG----------NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNK 90 (248)
Q Consensus 28 ~~~~l~~~~~----------~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 90 (248)
++.+++.|+. +.+.+||..+.+-... +.........+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5666666542 3688888877653321 1111111222223 67777777644 36889999887
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC------cEEEEEccCCC-----------CCceeEeCCCCCEEEEEcC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN------GAKVSSLPIDY-----------EPSSISLDHEHGLVAVGGA 153 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 153 (248)
+......++........+.+ +++.++.++.+ .+.++++.... ....+.. -++++++.|+.
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 224 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGY 224 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCB
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE-ECCEEEEEeCC
Confidence 64432233222222222222 56666666533 24555543211 1111111 25667777765
Q ss_pred C-----CeEEEEECCceeeee-c-ccCC--CceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCC
Q psy16005 154 D-----SKISIVENGAKVSSL-P-IDYE--PSSISLDHEHGLVAVGGAD-----SKVHIYELNNKS 205 (248)
Q Consensus 154 ~-----~~i~~~~~~~~~~~~-~-~~~~--~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~ 205 (248)
+ ..+..||........ . .... -.+++. -++++++.|+.+ ..+.+||+.+.+
T Consensus 225 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 225 DGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 4 457888843332221 1 1111 122222 256777777754 357888887654
No 345
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.24 E-value=0.63 Score=34.48 Aligned_cols=178 Identities=10% Similarity=0.022 Sum_probs=85.7
Q ss_pred EeCCCCCEEEEeC-----C-------cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC--------Ce
Q psy16005 24 GGDPKGKNFLYTN-----G-------NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS--------GK 81 (248)
Q Consensus 24 ~~s~~~~~l~~~~-----~-------~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~ 81 (248)
....++..++.|+ + ..+.+||..+.+-... +.........+.+ +++.++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 3345677766654 1 1377888877653221 1111111112222 66777777742 35
Q ss_pred EEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-------CcEEEEEccCCC---------C-CceeEeCCC
Q psy16005 82 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-------NGAKVSSLPIDY---------E-PSSISLDHE 144 (248)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~~~~i~~~~~~~---------~-~~~~~~~~~ 144 (248)
+.+||..+.+......++...... +++ ..+++.++.++. +.+.+++..... . ....+..-+
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 196 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGH-TVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD 196 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred EEEECCCCCcEeECCCCCCcccce-eEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEEC
Confidence 889999887643322332222221 222 235666666664 124555543211 0 011112225
Q ss_pred CCEEEEEcCCC-----eEEEEECCceeee-ec-ccCC--CceEEEcCCCCEEEEEcCC--------------CcEEEEEc
Q psy16005 145 HGLVAVGGADS-----KISIVENGAKVSS-LP-IDYE--PSSISLDHEHGLVAVGGAD--------------SKVHIYEL 201 (248)
Q Consensus 145 ~~~~~~~~~~~-----~i~~~~~~~~~~~-~~-~~~~--~~~~~~s~~~~~l~~~~~d--------------~~v~i~d~ 201 (248)
+++++.|+.++ .+..||....... +. ...+ -.+++ .-++++++.|+.+ ..+.+||+
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~ 275 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNE 275 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET
T ss_pred CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE-EECCEEEEECCccccCcCCccccccccCcEEEecC
Confidence 66777776544 4667774332222 11 1111 12222 2356777777653 24778888
Q ss_pred CCCCC
Q psy16005 202 NNKSL 206 (248)
Q Consensus 202 ~~~~~ 206 (248)
.+.+-
T Consensus 276 ~~~~W 280 (315)
T 4asc_A 276 EEKKW 280 (315)
T ss_dssp TTTEE
T ss_pred CCChh
Confidence 77643
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.99 E-value=0.83 Score=34.48 Aligned_cols=32 Identities=13% Similarity=0.340 Sum_probs=19.8
Q ss_pred EcCCCCEEEEEcCCC------cEEEEEcCCCCCCCccc
Q psy16005 180 LDHEHGLVAVGGADS------KVHIYELNNKSLSPKAE 211 (248)
Q Consensus 180 ~s~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~ 211 (248)
...++++++.|+.++ .|.++++++++......
T Consensus 313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 334677888887543 46777888887654433
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.36 E-value=2 Score=36.03 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=53.7
Q ss_pred EEEeCCCCCEEEEeC-C------cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccCC--eEEEEECCCC
Q psy16005 22 VLGGDPKGKNFLYTN-G------NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDISG--KVRIWDTVNK 90 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-~------~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~ 90 (248)
++.+..+++.++.|+ + +.+.+||..+.+-... +...... .+++...++++++.|+.++ .+.+||..+.
T Consensus 445 ~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 445 FTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp EEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred EEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence 344433677777764 1 3678899887543321 1111111 1223323778888887654 6899999887
Q ss_pred ceeeeee---ccCCCCCeeEEEEecC-CCEEEEEeC
Q psy16005 91 EHILKNE---FHPIGGPIKDIAWSPD-NQRMISIVE 122 (248)
Q Consensus 91 ~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~ 122 (248)
....... .+.......++.+..+ ++.++.++.
T Consensus 524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~ 559 (695)
T 2zwa_A 524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGG 559 (695)
T ss_dssp EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCB
T ss_pred ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCc
Confidence 6432221 2222223334555655 556666653
No 348
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.30 E-value=1.2 Score=33.08 Aligned_cols=207 Identities=11% Similarity=0.081 Sum_probs=98.2
Q ss_pred CCcEEEEEecCCCceeee-eecCCcceEEEEECcCCcEEEEEcc----CC-------eEEEEECCCCceeeeeeccCCCC
Q psy16005 36 NGNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSGFYIASGDI----SG-------KVRIWDTVNKEHILKNEFHPIGG 103 (248)
Q Consensus 36 ~~~~v~v~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~~ 103 (248)
++..+..||..+.+-... ...............+++.++.|+. ++ .+..||..+.+......++....
T Consensus 22 GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 101 (318)
T 2woz_A 22 NDTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC 101 (318)
T ss_dssp CSSEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC
T ss_pred cccceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc
Confidence 334588999887764431 1111112222333457788888873 12 27788988776433222222111
Q ss_pred CeeEEEEecCCCEEEEEeCC---c-----EEEEEccCCCC------C----ceeEeCCCCCEEEEEcC------CCeEEE
Q psy16005 104 PIKDIAWSPDNQRMISIVEN---G-----AKVSSLPIDYE------P----SSISLDHEHGLVAVGGA------DSKISI 159 (248)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~~---~-----~~i~~~~~~~~------~----~~~~~~~~~~~~~~~~~------~~~i~~ 159 (248)
. .+++.. +++.++.++.+ . +.+++...... + ...+...++++++.|+. ...+..
T Consensus 102 ~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 102 L-FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp S-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEE
T ss_pred c-cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEE
Confidence 1 222222 56666666632 1 23334322110 0 01111245666677654 235778
Q ss_pred EECCceeee-e---cccCCCceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCCCccccc-CCcCeEEEEEcCCCcE
Q psy16005 160 VENGAKVSS-L---PIDYEPSSISLDHEHGLVAVGGAD-----SKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEY 229 (248)
Q Consensus 160 ~~~~~~~~~-~---~~~~~~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~ 229 (248)
||....... + +....-.+++. -++++++.|+.+ ..+.+||+.+.+-....... .......+. -+++.
T Consensus 180 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 256 (318)
T 2woz_A 180 YNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSL 256 (318)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEE
T ss_pred EcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEE
Confidence 884332222 1 11111122222 356777777643 35788998876532111111 111112222 25677
Q ss_pred EEEEcCC--------------CeEEEEECCCC
Q psy16005 230 LVASDAH--------------RKVVLYRVPDF 247 (248)
Q Consensus 230 l~~~~~d--------------~~i~vw~~~~~ 247 (248)
++.|+.+ ..+.+||+.+.
T Consensus 257 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 257 YAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp EEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred EEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 7776643 45788888764
No 349
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.91 E-value=1.7 Score=33.45 Aligned_cols=148 Identities=11% Similarity=0.078 Sum_probs=95.6
Q ss_pred cCCcEEEEeCCCCCEEEE--eC-C-------------cEEEEEecCCC--ceeeeeecC------CcceEEEEEC---cC
Q psy16005 17 RGQPIVLGGDPKGKNFLY--TN-G-------------NSVIIRNIENP--AISDIYTEH------SCAVNVAKYS---PS 69 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~--~~-~-------------~~v~v~~~~~~--~~~~~~~~~------~~~v~~~~~s---~~ 69 (248)
--.|..+...+++++-+. |. + -.|.+||+.+. +.++.+.-. ...+..+++. |+
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 346778888888876654 21 1 26889999999 888766522 3457788877 22
Q ss_pred ----CcEEEEE-ccCCeEEEEECCCCceeeeee--ccCC--------------CCCeeEEEEecC----CCEEEEEeCCc
Q psy16005 70 ----GFYIASG-DISGKVRIWDTVNKEHILKNE--FHPI--------------GGPIKDIAWSPD----NQRMISIVENG 124 (248)
Q Consensus 70 ----~~~l~~~-~~dg~i~iwd~~~~~~~~~~~--~~~~--------------~~~v~~~~~~~~----~~~l~~~~~~~ 124 (248)
+.+++.+ +..+-|.|+|+.+++...... +... ...+..|+++|+ ++.|+...-.+
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence 3444444 346789999999876432111 0010 247889999998 78888887777
Q ss_pred EEEEEccC-----------------CC---CCceeEeC-CCCCEEEEEcCCCeEEEEECCc
Q psy16005 125 AKVSSLPI-----------------DY---EPSSISLD-HEHGLVAVGGADSKISIVENGA 164 (248)
Q Consensus 125 ~~i~~~~~-----------------~~---~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~ 164 (248)
.+++.++. .. ....++++ .+|.++++--....|..|+...
T Consensus 246 ~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 246 IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 66666531 01 11134554 5677777777888899999554
No 350
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.27 E-value=1.8 Score=31.97 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=35.2
Q ss_pred CCCEEEEeC-C-------cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEcc------CCeEEEEECCCCc
Q psy16005 28 KGKNFLYTN-G-------NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDI------SGKVRIWDTVNKE 91 (248)
Q Consensus 28 ~~~~l~~~~-~-------~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~ 91 (248)
+++.++.|+ + ..+.+||..+.+-... +........++. .++++++.|+. -..+.+||+.+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 566666654 2 3688888877653321 111001111222 36777777764 2358899998876
Q ss_pred ee
Q psy16005 92 HI 93 (248)
Q Consensus 92 ~~ 93 (248)
..
T Consensus 187 W~ 188 (318)
T 2woz_A 187 WK 188 (318)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.81 E-value=3.3 Score=33.70 Aligned_cols=173 Identities=14% Similarity=0.157 Sum_probs=106.2
Q ss_pred CCCEEEEeC--CcEEEEEecCCCceeeeee-cCCcceEEEEEC--cCCcEEEEEcc-------CCeE---------EE--
Q psy16005 28 KGKNFLYTN--GNSVIIRNIENPAISDIYT-EHSCAVNVAKYS--PSGFYIASGDI-------SGKV---------RI-- 84 (248)
Q Consensus 28 ~~~~l~~~~--~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~~~~~-------dg~i---------~i-- 84 (248)
||++|+.-. ...|...+++..+.-+.+. .....+.+++|- |+-.+++.+++ ||.. .+
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 788888875 6688888888887766554 334567888886 67777776653 2221 11
Q ss_pred -EECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc----------------EEEEE------------------
Q psy16005 85 -WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG----------------AKVSS------------------ 129 (248)
Q Consensus 85 -wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----------------~~i~~------------------ 129 (248)
.|..+.+........ +..-.....+++++.++.+.+. +.+++
T Consensus 221 ~iD~~tm~v~~Qv~v~---gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 221 AIDAETMEMAFQVIVD---GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEETTTCSEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEcCCccEEEEEEEcC---CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 122222221111111 2333455567777777765321 12222
Q ss_pred -------cc--------------CCCCCceeEeCCCCCEEEEEc-CCCeEEEEECCce---------------eeeeccc
Q psy16005 130 -------LP--------------IDYEPSSISLDHEHGLVAVGG-ADSKISIVENGAK---------------VSSLPID 172 (248)
Q Consensus 130 -------~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~---------------~~~~~~~ 172 (248)
.+ .+..+..+..+|+|+++++++ -+.++.+++..+. ....+..
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 22 123456778899999887765 5778999883321 2334456
Q ss_pred CCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 173 YEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 173 ~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
..+...+|+++|.-..+---|.+|..|++..
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 6678899999995555556799999999965
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.81 E-value=4.5 Score=31.02 Aligned_cols=67 Identities=10% Similarity=-0.111 Sum_probs=36.4
Q ss_pred CCcEEEEeCC--CCCEEEEeCCc----EEEEEecCCCceeeeee------c--------CCcceEEEEECc-C-CcEEEE
Q psy16005 18 GQPIVLGGDP--KGKNFLYTNGN----SVIIRNIENPAISDIYT------E--------HSCAVNVAKYSP-S-GFYIAS 75 (248)
Q Consensus 18 ~~v~~~~~s~--~~~~l~~~~~~----~v~v~~~~~~~~~~~~~------~--------~~~~v~~~~~s~-~-~~~l~~ 75 (248)
..|.++++.| ++..++.+..+ .|...+ +.++.-..+. . ....|.++++.| + ...|+.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4689999998 55555555444 454432 3333211111 0 112578899987 2 455666
Q ss_pred EccCCeEEEE
Q psy16005 76 GDISGKVRIW 85 (248)
Q Consensus 76 ~~~dg~i~iw 85 (248)
+...+.|...
T Consensus 134 g~~~ggl~~S 143 (394)
T 3b7f_A 134 GTSPQGLFRS 143 (394)
T ss_dssp EEETTEEEEE
T ss_pred EecCCcEEEE
Confidence 6555655444
No 353
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=90.53 E-value=0.73 Score=37.69 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=41.6
Q ss_pred CceEEEcCCCCEEEEEcCC------------CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 175 PSSISLDHEHGLVAVGGAD------------SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~~d------------~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
+-.|+|+|.|.++++-..+ +.+.+.+..+++....+..+....++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999966664322 3466667677766444443456789999999999988776
No 354
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=90.51 E-value=0.85 Score=37.02 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=41.0
Q ss_pred CCceEEEcCCCCEEEEEcC------------CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 174 EPSSISLDHEHGLVAVGGA------------DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 174 ~~~~~~~s~~~~~l~~~~~------------d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
.+..+.|+++|.+.++... .+.|..++..+++............++.++|+||++.|+.+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3567999999987664321 22577777777765433321234568999999999988776
No 355
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=90.46 E-value=2.6 Score=34.31 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=45.2
Q ss_pred cCCcEEEEeCCCCCEEEEeCC-------------cEEEEEecCCCceeeeeecC-CcceEEEEECcCCcEEEEEc
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNG-------------NSVIIRNIENPAISDIYTEH-SCAVNVAKYSPSGFYIASGD 77 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~-------------~~v~v~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~ 77 (248)
...+..|.|.++|.+.++... +.++.++..+++..+.+... ...++.++|+||++.|+++-
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 356778999999988875431 26777777778877666543 35789999999999888763
No 356
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=89.22 E-value=2.5 Score=34.59 Aligned_cols=58 Identities=24% Similarity=0.395 Sum_probs=43.4
Q ss_pred CcEEEEeCCCCCEEEEeCC-------------cEEEEEecCCCceeeeeecC-CcceEEEEECcCCcEEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTNG-------------NSVIIRNIENPAISDIYTEH-SCAVNVAKYSPSGFYIASG 76 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~-------------~~v~v~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 76 (248)
.+--|.|+|+|+++++... +.+.+.+..+++..+.+... ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4567999999997776531 24666677778877777655 4579999999999888765
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.08 E-value=5.2 Score=29.22 Aligned_cols=208 Identities=12% Similarity=0.054 Sum_probs=100.2
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee-ee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI-LK 95 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~ 95 (248)
...|..++....- .++.. ++.++.|-.........-......|..++...+. .++. . ||.|..|-......+ ..
T Consensus 23 ~~~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 23 QSGVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSSCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred cCCCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 3456777765443 23334 8899999654322211111123356777665443 3333 4 899999976543221 10
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEECC--
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVENG-- 163 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 163 (248)
..+ ...|..++...+. .++.. ++.+..|-.... ..+..++..... .++. . ++.++.|-.+
T Consensus 98 ~~~---~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~l-~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 98 AEA---RSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALAV-K-NGGVIAWGDNYF 169 (282)
T ss_dssp GGG---SSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE-E-TTEEEEEECCTT
T ss_pred ccc---CCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEEE-E-CCEEEEecCCCC
Confidence 111 2356666655433 23333 555566654321 122333332222 2222 3 6889988732
Q ss_pred -ceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 164 -AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 164 -~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
+.-........+..++...+. .++. .||.|+.|=........... .....|..++-..+.. ++.. ||.++.|
T Consensus 170 gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~h~-~al~--~g~v~~w 242 (282)
T 3qhy_B 170 GQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPT-EALSGVSAIASGEWYS-LALK--NGKVIAW 242 (282)
T ss_dssp STTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCG-GGGSSCCEEEECSSCE-EEEE--TTEEEEE
T ss_pred CCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCc-ccCCCceEEEcCCCEE-EEEE--CCEEEEe
Confidence 221111123344555544332 2333 58999999765433222111 1223567776554333 3332 8888887
Q ss_pred EC
Q psy16005 243 RV 244 (248)
Q Consensus 243 ~~ 244 (248)
=.
T Consensus 243 G~ 244 (282)
T 3qhy_B 243 GS 244 (282)
T ss_dssp ST
T ss_pred cC
Confidence 43
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.50 E-value=6 Score=34.61 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=32.1
Q ss_pred ceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.+.+++..++..++++-+.|+++|+|++.+++.+....+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 467777888888999999999999999999987654433
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.34 E-value=8.2 Score=30.58 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=34.0
Q ss_pred cceEEEEECcCCc-EEEEEccCCeEEEEECCCCc---eeeee--ecc-----CCCCCeeEEEEecC
Q psy16005 59 CAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKE---HILKN--EFH-----PIGGPIKDIAWSPD 113 (248)
Q Consensus 59 ~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~---~~~~~--~~~-----~~~~~v~~~~~~~~ 113 (248)
.....|+|.|++. .|+++...|.|++++..... .+... .+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3457899999985 45555678999999754321 11100 011 11356788999996
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=85.72 E-value=8.5 Score=28.05 Aligned_cols=187 Identities=13% Similarity=0.061 Sum_probs=91.1
Q ss_pred eCCCCCEEEEeCCcEEEE---EecCCCceeeeeecCCcceEEEEECc--CCcEEEEEccCCeEEEEECCCCc----eeee
Q psy16005 25 GDPKGKNFLYTNGNSVII---RNIENPAISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKE----HILK 95 (248)
Q Consensus 25 ~s~~~~~l~~~~~~~v~v---~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~----~~~~ 95 (248)
.+....+++..+.|.++- +++........+ .....|.++.. + +...++..+.+|.++-..+..-. ....
T Consensus 32 ~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~ 109 (276)
T 3no0_A 32 VPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPI 109 (276)
T ss_dssp EETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEEC
T ss_pred ECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEE
Confidence 344455666777776664 343322211113 23456666644 4 46788999999999988764421 0111
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEEC-----------Cc
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVEN-----------GA 164 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~ 164 (248)
..+.. .+.+..+........++..++.| .+..++. |.
T Consensus 110 i~lke-gD~l~~~~~~~~~~~ill~T~~G-------------------------------~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 110 IKLTE-GDEVVSIASSVDETHILLFTKKG-------------------------------RVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp SCCCT-TCCEEEEEECCSSCEEEEEETTS-------------------------------EEEEEEGGGSCBCCTTCCCE
T ss_pred EecCC-CCEEEEEEEeCCCCEEEEEECCC-------------------------------EEEEEEhhhCCCcCCCCCCE
Confidence 12222 23344443333333444444444 3332220 00
Q ss_pred eeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc-----cccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 165 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA-----ELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 165 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
....+.....+..+...+++..++..+..|.++...+..-....+. .....+.+..+....+...++..+.+|.+
T Consensus 158 ~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ 237 (276)
T 3no0_A 158 QGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKA 237 (276)
T ss_dssp ECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCE
T ss_pred EEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeE
Confidence 0111111222333333344567888888999888887543221110 00223445554443344456666677777
Q ss_pred EE--EECC
Q psy16005 240 VL--YRVP 245 (248)
Q Consensus 240 ~v--w~~~ 245 (248)
.. ++.+
T Consensus 238 ir~~~~~~ 245 (276)
T 3no0_A 238 FYDKINQK 245 (276)
T ss_dssp EEEEEEGG
T ss_pred EEeeeCHH
Confidence 66 6653
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.10 E-value=5.7 Score=34.75 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=28.5
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..+.+++..++..++++.+.|+++|+|++.+++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence 356778888888999999999999999998863
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.94 E-value=5.9 Score=35.41 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=30.0
Q ss_pred eEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 61 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
+.+++..++..++++-+.|+++|+|++.+++.+....+
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 44555667788999999999999999999987654443
No 363
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=81.82 E-value=14 Score=31.08 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=29.0
Q ss_pred ceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.|.++.+ +..++++-+.|+++|+|++++++.+....+
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555544 467999999999999999999987655555
No 364
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=73.83 E-value=27 Score=26.58 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=31.9
Q ss_pred ceeEeCCC-CCEEEEEcCCCeEEEEE-CCceeeeecc--------------cCCCceEEEcCC-CCEEEEEcCCCcEEEE
Q psy16005 137 SSISLDHE-HGLVAVGGADSKISIVE-NGAKVSSLPI--------------DYEPSSISLDHE-HGLVAVGGADSKVHIY 199 (248)
Q Consensus 137 ~~~~~~~~-~~~~~~~~~~~~i~~~~-~~~~~~~~~~--------------~~~~~~~~~s~~-~~~l~~~~~d~~v~i~ 199 (248)
..+.++|. ...+.++..++.|...+ .++.-..+.. ...+.+++++|+ ...|.++...+ |...
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 46777763 34444444444455444 3333222211 123567888885 35666666544 4444
Q ss_pred E
Q psy16005 200 E 200 (248)
Q Consensus 200 d 200 (248)
+
T Consensus 259 ~ 259 (394)
T 3b7f_A 259 D 259 (394)
T ss_dssp E
T ss_pred C
Confidence 3
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.57 E-value=2.8 Score=37.44 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 217 PVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 217 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+.+++..++..++++-+.|+++|+|++.+++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCC
Confidence 44556677888999999999999999998863
No 366
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=67.94 E-value=34 Score=25.33 Aligned_cols=178 Identities=12% Similarity=0.041 Sum_probs=93.5
Q ss_pred cCCcEEEEEccCCeEEEEECCCCc-------eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEE----ccC----
Q psy16005 68 PSGFYIASGDISGKVRIWDTVNKE-------HILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSS----LPI---- 132 (248)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~----~~~---- 132 (248)
|+...+++.+.+|.|+--.+..-+ ......+.. .+.+..+........++..++.|-.++- ++.
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 456778888899998877653221 111112222 2445555555555566666666643222 111
Q ss_pred --------------CCCCceeEeCC---CCCEEEEEcCCCeEEEEECC-------ceeee--ecccCCCceEEEcCCCCE
Q psy16005 133 --------------DYEPSSISLDH---EHGLVAVGGADSKISIVENG-------AKVSS--LPIDYEPSSISLDHEHGL 186 (248)
Q Consensus 133 --------------~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~-------~~~~~--~~~~~~~~~~~~s~~~~~ 186 (248)
+..+..+...+ +...++..+..|.++..... .-... +.-...+..+....+...
T Consensus 85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEK 164 (312)
T ss_dssp ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCE
T ss_pred CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCE
Confidence 01111121111 34567777888888776521 11111 222233334444344557
Q ss_pred EEEEcCCCcEEEEEcCCCCCC-------CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 187 VAVGGADSKVHIYELNNKSLS-------PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++..+.+|.+..+....-... ..........|..+...+++..+++.+..|..+..++..
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 788888999888887542111 111112345566666655667788888888888877653
No 367
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=65.46 E-value=44 Score=25.69 Aligned_cols=217 Identities=10% Similarity=0.042 Sum_probs=114.0
Q ss_pred CCcEEEEe-CCCCCEEEEeC---Cc---EEEEEecCC--------Cceeeeeec-----CCcceEEEEECcCCcEEEE--
Q psy16005 18 GQPIVLGG-DPKGKNFLYTN---GN---SVIIRNIEN--------PAISDIYTE-----HSCAVNVAKYSPSGFYIAS-- 75 (248)
Q Consensus 18 ~~v~~~~~-s~~~~~l~~~~---~~---~v~v~~~~~--------~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~-- 75 (248)
.-+..++. +.+|+.+++-- +| ++-..+... +.+..-+.. +--.|..+...+++++-+.
T Consensus 26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLWVLDt 105 (381)
T 3q6k_A 26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLWVVDI 105 (381)
T ss_dssp CCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEEEEEC
T ss_pred cceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEEEEeC
Confidence 34557888 78888877752 22 444444321 122132321 1235778888877765442
Q ss_pred Ecc-------------CCeEEEEECCCC--ceeeeeeccC----CCCCeeEEEEe---cC----CCEEEEEe--CCcEEE
Q psy16005 76 GDI-------------SGKVRIWDTVNK--EHILKNEFHP----IGGPIKDIAWS---PD----NQRMISIV--ENGAKV 127 (248)
Q Consensus 76 ~~~-------------dg~i~iwd~~~~--~~~~~~~~~~----~~~~v~~~~~~---~~----~~~l~~~~--~~~~~i 127 (248)
|.. --.|.+||+.++ +.+....++. ....+..+++. |+ +.+++.+. ..++.+
T Consensus 106 G~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIV 185 (381)
T 3q6k_A 106 GSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFI 185 (381)
T ss_dssp SSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEE
T ss_pred CCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEE
Confidence 211 125889999999 8776666542 23467788887 22 33434333 345666
Q ss_pred EEccCC----------------------------CCCceeEeCCC----CCEEEEEcCCC-eEEEEE-----CC---cee
Q psy16005 128 SSLPID----------------------------YEPSSISLDHE----HGLVAVGGADS-KISIVE-----NG---AKV 166 (248)
Q Consensus 128 ~~~~~~----------------------------~~~~~~~~~~~----~~~~~~~~~~~-~i~~~~-----~~---~~~ 166 (248)
+++..+ ..+..++++|+ ++.|....-.+ .++-.. .. ..+
T Consensus 186 ydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v 265 (381)
T 3q6k_A 186 YDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNP 265 (381)
T ss_dssp EETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCC
T ss_pred EECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhce
Confidence 665321 12345566665 44444433322 333333 11 111
Q ss_pred eeecccC---CCceEEEc-CCCCEEEEEcCCCcEEEEEcCCCCC----CCccc-ccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 167 SSLPIDY---EPSSISLD-HEHGLVAVGGADSKVHIYELNNKSL----SPKAE-LDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 167 ~~~~~~~---~~~~~~~s-~~~~~l~~~~~d~~v~i~d~~~~~~----~~~~~-~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
+.+.... ....++++ .+|.++++--+.+.|..|+..+... ...+. ...-..+..+.+.++|...+.++
T Consensus 266 ~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 266 ELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 1111111 11235665 5777777777888999999876111 11111 11223577888888887666553
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=65.07 E-value=8.6 Score=32.33 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 217 PVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 217 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.|.++.+ +..++++-+.|.++|+|++++++
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCc
Confidence 4555554 46799999999999999999863
No 369
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=64.10 E-value=28 Score=27.84 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=36.5
Q ss_pred EEEEEcCCCcEEEEEcCCC-C-------CCCcccc-cCCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 186 LVAVGGADSKVHIYELNNK-S-------LSPKAEL-DHLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 186 ~l~~~~~d~~v~i~d~~~~-~-------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
.+..|+.+|.|.-.-+... . .+..+.. ....+|..|.++++.++|+.++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 5777888887654443221 1 1111121 24578999999999999999998876664
No 370
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=60.78 E-value=48 Score=24.49 Aligned_cols=102 Identities=13% Similarity=0.009 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCeEEEEECC-------ceeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC-------
Q psy16005 144 EHGLVAVGGADSKISIVENG-------AKVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS------- 207 (248)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~-------~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~------- 207 (248)
++..++..+..|.++-.... .-+..+. -...+..+....+...++..+.+|.+..++...-...
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv 187 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV 187 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe
Confidence 44567777888888776511 1111111 1223333333334456777778888888876432111
Q ss_pred CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 208 PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 208 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
..........|.++...+++..+++.+..|..+-.++.
T Consensus 188 ~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 188 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 11111234567777655566678888888888876653
No 371
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=59.48 E-value=84 Score=26.88 Aligned_cols=60 Identities=7% Similarity=-0.057 Sum_probs=34.8
Q ss_pred ccCCcEEEEeCCCC-CEEEEe-CCcEEEEEecCCCceeeeeecC-------CcceEEEEECcC-CcEEEEE
Q psy16005 16 QRGQPIVLGGDPKG-KNFLYT-NGNSVIIRNIENPAISDIYTEH-------SCAVNVAKYSPS-GFYIASG 76 (248)
Q Consensus 16 ~~~~v~~~~~s~~~-~~l~~~-~~~~v~v~~~~~~~~~~~~~~~-------~~~v~~~~~s~~-~~~l~~~ 76 (248)
..+.|.+++++|.. ..++++ ..+.|+..+ +.++.=..+..+ ...+.+++++|. .+.++.+
T Consensus 13 ~~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~ 82 (789)
T 1sqj_A 13 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLA 82 (789)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEE
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEE
Confidence 34789999999963 344444 456665554 344432222221 246999999984 3444444
No 372
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=56.54 E-value=18 Score=29.30 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=37.0
Q ss_pred CEEEEEcCCCcEEEEEcCCCCC----CCcccc-cCCcCeE-EEEEcCCCcEEEEEcCCCeEEE
Q psy16005 185 GLVAVGGADSKVHIYELNNKSL----SPKAEL-DHLGPVT-DCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 185 ~~l~~~~~d~~v~i~d~~~~~~----~~~~~~-~~~~~v~-~~~~s~~~~~l~~~~~d~~i~v 241 (248)
..+..|+.+|.|.-..+..... ...+.. ....+|. .+.+++++.+|+.++.++.++|
T Consensus 414 tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 414 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3677888899876655543221 111111 2246785 8999999999999988766554
No 373
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=55.12 E-value=36 Score=27.51 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=37.2
Q ss_pred EEEEEcCCCcEEEEEcC-CCC--CCCcccccCCcCe-EEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 186 LVAVGGADSKVHIYELN-NKS--LSPKAELDHLGPV-TDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 186 ~l~~~~~d~~v~i~d~~-~~~--~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
.+..|+.+|.|.-.-+. ... ....+......+| ..+.++++..+|+.++..+.++|
T Consensus 402 V~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 402 IAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 56678889987755443 221 1222222345677 48999999999999988877765
No 374
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=54.70 E-value=69 Score=24.47 Aligned_cols=179 Identities=7% Similarity=0.016 Sum_probs=91.0
Q ss_pred CcCCcEEEEEccCCeEEEEECCC-------CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEE----EccC---
Q psy16005 67 SPSGFYIASGDISGKVRIWDTVN-------KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVS----SLPI--- 132 (248)
Q Consensus 67 s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~----~~~~--- 132 (248)
-|+...+++.+.+|.|+--.+.. +.......+.. .+.+..+........++..++.|..+| +++.
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46677888888888888654321 11112223332 345555555555555665555554322 2221
Q ss_pred ---------------CCCCceeE-eC--CCCCEEEEEcCCCeEEEEECC-------ceeeeecc--cCCCceEEEcCCCC
Q psy16005 133 ---------------DYEPSSIS-LD--HEHGLVAVGGADSKISIVENG-------AKVSSLPI--DYEPSSISLDHEHG 185 (248)
Q Consensus 133 ---------------~~~~~~~~-~~--~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~--~~~~~~~~~s~~~~ 185 (248)
+..+..+. .. .++.+++..+..|.++-.... .-+..+.. ...+..+.......
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDR 162 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCc
Confidence 11122221 22 234577788888888776511 11112222 22233333333445
Q ss_pred EEEEEcCCCcEEEEEcCCCCCCC-------cccccCCcCeEEEEEcC---------------------------------
Q psy16005 186 LVAVGGADSKVHIYELNNKSLSP-------KAELDHLGPVTDCSFSP--------------------------------- 225 (248)
Q Consensus 186 ~l~~~~~d~~v~i~d~~~~~~~~-------~~~~~~~~~v~~~~~s~--------------------------------- 225 (248)
.++..+.+|.+.-++...-.... .........|.++...+
T Consensus 163 ~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~ 242 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD 242 (370)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------------
T ss_pred eEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccccc
Confidence 67777788888777764322111 11112344566555444
Q ss_pred --CCcEEEEEcCCCeEEEEECCC
Q psy16005 226 --SNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 226 --~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++..+++.+..|..+...+..
T Consensus 243 ~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 243 NGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ----CEEEEEETTSEEEEEEGGG
T ss_pred ccCCceEEEeeCCCCEEEEEHHH
Confidence 446788888888888766543
No 375
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=54.17 E-value=1e+02 Score=26.12 Aligned_cols=103 Identities=8% Similarity=-0.091 Sum_probs=52.6
Q ss_pred CCcEEEEeCCCC-CEEEEeC-CcEEEEEecCCCceeeeeecC-------CcceEEEEECc-CCcEEEEEccC-------C
Q psy16005 18 GQPIVLGGDPKG-KNFLYTN-GNSVIIRNIENPAISDIYTEH-------SCAVNVAKYSP-SGFYIASGDIS-------G 80 (248)
Q Consensus 18 ~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------~~~v~~~~~s~-~~~~l~~~~~d-------g 80 (248)
+.|..++++|.. ..++++. .+.|+..+ +.++.-..+..+ ...|.+++++| +.+.++.+... +
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 389999999974 3444444 56666554 334332222221 24589999998 33444433221 1
Q ss_pred eEEEEECCCCceeeee-eccCC-------CCCeeEEEEecC-CCEEEEEe
Q psy16005 81 KVRIWDTVNKEHILKN-EFHPI-------GGPIKDIAWSPD-NQRMISIV 121 (248)
Q Consensus 81 ~i~iwd~~~~~~~~~~-~~~~~-------~~~v~~~~~~~~-~~~l~~~~ 121 (248)
...||.-..+...... ..... ...+..++++|. ...++++.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 2456655443322111 11110 112467889885 35555555
No 376
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=52.29 E-value=72 Score=25.55 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=31.5
Q ss_pred EEEEEccCCeEEEEECC-CCc-----e--eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE
Q psy16005 72 YIASGDISGKVRIWDTV-NKE-----H--ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA 125 (248)
Q Consensus 72 ~l~~~~~dg~i~iwd~~-~~~-----~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 125 (248)
.++.|+.+|.|.-.-+. .+. . +....+.....+|..+.++++.++|+++++.++
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 46677888876544332 211 1 111222223467888888888888888877765
No 377
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=51.39 E-value=39 Score=20.54 Aligned_cols=26 Identities=8% Similarity=-0.239 Sum_probs=15.8
Q ss_pred eEEEEecCCCEEEEEeCCcEEEEEccC
Q psy16005 106 KDIAWSPDNQRMISIVENGAKVSSLPI 132 (248)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~i~~~~~ 132 (248)
..+.+..+|++++... ++..+|.-..
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNTVFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCEEEECSC
T ss_pred EEEEEeCCCcEEEECC-CCCEEEECCC
Confidence 3567777887776543 3345776544
No 378
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=49.69 E-value=69 Score=26.01 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=30.3
Q ss_pred eEEEEECc--CCcEEEEEccCCeEEEEECCCCc----eeeeeeccCCCCCee-EEEEecCCCEEEEEeCCcE
Q psy16005 61 VNVAKYSP--SGFYIASGDISGKVRIWDTVNKE----HILKNEFHPIGGPIK-DIAWSPDNQRMISIVENGA 125 (248)
Q Consensus 61 v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~ 125 (248)
.++++... +-..++.|+.+|.|.-..+.... ......+.....+|. .+.+++++.+|+++++.++
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V 473 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQV 473 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccc
Confidence 44444433 22345566677766544333221 111112222234553 6666666666666665543
No 379
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=48.76 E-value=55 Score=26.93 Aligned_cols=56 Identities=7% Similarity=0.058 Sum_probs=36.4
Q ss_pred EEEEEcCCCcEEEEEcCCCC----CC--Cccc-ccCCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 186 LVAVGGADSKVHIYELNNKS----LS--PKAE-LDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 186 ~l~~~~~d~~v~i~d~~~~~----~~--~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
.+..|+.+|.|.-.-..... .. .... .....+|..+.++++..+|+.++.++.++|
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 66778888887644333221 10 0111 124568999999999999999988876665
No 380
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=44.03 E-value=51 Score=19.84 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=22.0
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEccCCCC--CceeEeCCCCCEEE
Q psy16005 107 DIAWSPDNQRMISIVENGAKVSSLPIDYE--PSSISLDHEHGLVA 149 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~ 149 (248)
.+.+..+|+.++... ++..+|.-..... ...+.+.++|++++
T Consensus 54 ~l~l~~dGNLVl~~~-~~~~~W~S~t~~~~g~~~l~l~~dGnlvl 97 (110)
T 3a0c_A 54 RLTLHNNGNLVIYDQ-SNRVIWQTKTNGKEDHYVLVLQQDRNVVI 97 (110)
T ss_dssp EEEECTTSCEEEECT-TCCEEEECCCCCSSSCCEEEECTTSCEEE
T ss_pred EEEEeCCCCEEEECC-CCcEEEecCCCCCCCCEEEEEeCCccEEE
Confidence 466777787666533 4456776443221 22444555555443
No 381
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=43.89 E-value=76 Score=26.61 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=35.6
Q ss_pred EEEEEcCCCcEE-EEEcCCCCC-------CCcc-cccCCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 186 LVAVGGADSKVH-IYELNNKSL-------SPKA-ELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 186 ~l~~~~~d~~v~-i~d~~~~~~-------~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
.+..|+.+|.|. +........ +... ......+|..|.++++.++|+.++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 567788888765 332222211 1111 1135678999999999999999998877665
No 382
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=43.22 E-value=53 Score=19.83 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=15.5
Q ss_pred eEEEEecCCCEEEEEeCCcEEEEEcc
Q psy16005 106 KDIAWSPDNQRMISIVENGAKVSSLP 131 (248)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~i~~~~ 131 (248)
..+.+..+|++++....+...+|.-.
T Consensus 52 ~~l~l~~dGNLVl~~~~~~~~vW~S~ 77 (111)
T 3mez_A 52 CTLRLNNRGQLEIHSANSNTPVWVYP 77 (111)
T ss_dssp CEEEECTTSCEEEECSSCSSCSEEES
T ss_pred EEEEEcCCCcEEEEeCCCCEEEEEec
Confidence 35667778887776443333466543
No 383
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=42.63 E-value=57 Score=20.01 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=22.5
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEccCCCC--CceeEeCCCCCEEE
Q psy16005 107 DIAWSPDNQRMISIVENGAKVSSLPIDYE--PSSISLDHEHGLVA 149 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~ 149 (248)
.+.+..+|+.++.. .++..+|.-..... ...+.+.++|++++
T Consensus 64 ~l~l~~dGNLVl~d-~~~~~lW~S~~~~~~g~~~l~l~~~Gnlvl 107 (119)
T 1b2p_A 64 RAVLQPDGVLVVIT-NENVTVWQSPVAGKAGHYVLVLQPDRNVVI 107 (119)
T ss_dssp EEEECTTSCEEEEC-TTCCEEEECSCCCCSSCEEEEECTTSCEEE
T ss_pred EEEEccCCEEEEEe-CCCcEEEcCCCCCCCCCEEEEEECCCcEEE
Confidence 46677788776663 34456777543221 23344555555433
No 384
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=41.02 E-value=1.5e+02 Score=24.42 Aligned_cols=56 Identities=4% Similarity=0.037 Sum_probs=35.8
Q ss_pred cEEEEEccCCeEEEEECCCCc----ee--eeeeccCCCCCeeEEEEecCCCEEEEEeCCcEE
Q psy16005 71 FYIASGDISGKVRIWDTVNKE----HI--LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAK 126 (248)
Q Consensus 71 ~~l~~~~~dg~i~iwd~~~~~----~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 126 (248)
..+..|+.+|.|.-.-..... .. ..........+|..+.++++...|++++..++.
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~ 442 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVS 442 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEE
Confidence 356678888987644333221 11 112222345688999999999999999888763
No 385
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=40.07 E-value=61 Score=19.61 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=18.0
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEccCCC--CCceeEeCCCCCEEEE
Q psy16005 107 DIAWSPDNQRMISIVENGAKVSSLPIDY--EPSSISLDHEHGLVAV 150 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~ 150 (248)
.+.+..||+.++.....+..+|.-.... ....+.+..+|++++.
T Consensus 27 ~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~ 72 (113)
T 3mez_B 27 SLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDIT 72 (113)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEE
T ss_pred EEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEE
Confidence 3444445554443222234455433221 1123444455554443
No 386
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=39.54 E-value=1.7e+02 Score=24.69 Aligned_cols=183 Identities=10% Similarity=0.043 Sum_probs=88.0
Q ss_pred eEEEE-ECcCCcEEEEE-ccC----CeEEEEECCCCceeeeeecc-CCCC------CeeEEEEecCCCEEEEEe------
Q psy16005 61 VNVAK-YSPSGFYIASG-DIS----GKVRIWDTVNKEHILKNEFH-PIGG------PIKDIAWSPDNQRMISIV------ 121 (248)
Q Consensus 61 v~~~~-~s~~~~~l~~~-~~d----g~i~iwd~~~~~~~~~~~~~-~~~~------~v~~~~~~~~~~~l~~~~------ 121 (248)
...+. ++|++++++.+ |.. ..++++|+.+++.+.. .+. .-+. ....++|..++..+++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-CcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 44555 89998877654 333 3699999999875421 111 1111 113458874444444321
Q ss_pred -C----CcEEEEEccCCCCC-------------ceeEeCCCCC-----EEEEEc---CCCeEEEEECC---ceeeeeccc
Q psy16005 122 -E----NGAKVSSLPIDYEP-------------SSISLDHEHG-----LVAVGG---ADSKISIVENG---AKVSSLPID 172 (248)
Q Consensus 122 -~----~~~~i~~~~~~~~~-------------~~~~~~~~~~-----~~~~~~---~~~~i~~~~~~---~~~~~~~~~ 172 (248)
+ ..++.|.+..+..- .....+++++ .+++.+ ....+.+.+.. .....+..+
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP 289 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC
Confidence 1 11344444322111 1122334443 233322 12344555522 222333322
Q ss_pred CCCceEEEcCCCCEEEEE----------cCCCcEEEEEcCCCC------CC-Cc-ccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 173 YEPSSISLDHEHGLVAVG----------GADSKVHIYELNNKS------LS-PK-AELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 173 ~~~~~~~~s~~~~~l~~~----------~~d~~v~i~d~~~~~------~~-~~-~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
... .+..++++.+++.. ...+.|...|+.+.. .. .. +.......+..+.|..+ ..+++..
T Consensus 290 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 290 SDA-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp TTC-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred Ccc-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 222 23344555554432 136779999987642 11 11 22234456788899876 4566665
Q ss_pred CCC--eEEEEECCC
Q psy16005 235 AHR--KVVLYRVPD 246 (248)
Q Consensus 235 ~d~--~i~vw~~~~ 246 (248)
.++ .+.++++.+
T Consensus 368 ~~~~~~l~~~~~~~ 381 (711)
T 4hvt_A 368 DNVVAKVVTFTLEN 381 (711)
T ss_dssp ETTEEEEEEECEET
T ss_pred ECCEEEEEEEECCC
Confidence 565 466666544
No 387
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=37.08 E-value=67 Score=19.16 Aligned_cols=43 Identities=7% Similarity=0.056 Sum_probs=22.6
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEccCCC--CCceeEeCCCCCEEEE
Q psy16005 107 DIAWSPDNQRMISIVENGAKVSSLPIDY--EPSSISLDHEHGLVAV 150 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~ 150 (248)
.+.+..||+.++.. .++..+|.-.... ....+.+..+|++++.
T Consensus 54 ~L~l~~dGnLvL~d-~~~~~vWss~t~~~~~~~~l~L~ddGNlVly 98 (105)
T 4h3o_A 54 SAVLQSDGNFVVYD-SSGRSLWASHSTRGSGNYILILQDDGNVIIY 98 (105)
T ss_dssp EEEECTTSCEEEEC-TTCCEEEECCCCCCSSCEEEEECTTSCEEEE
T ss_pred EEEEeCCccEEEEC-CCcEEEEEecCCCCCCCEEEEEeCCCeEEEE
Confidence 57788888876653 3445677654322 1223334444444443
No 388
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=35.34 E-value=1.1e+02 Score=25.56 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=36.1
Q ss_pred EEEEEcCCCcEEEE-EcCCCCCC-Cc-ccccCCcCeEEEEEcCCC--cEEEEEcCCCeEEE
Q psy16005 186 LVAVGGADSKVHIY-ELNNKSLS-PK-AELDHLGPVTDCSFSPSN--EYLVASDAHRKVVL 241 (248)
Q Consensus 186 ~l~~~~~d~~v~i~-d~~~~~~~-~~-~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~v 241 (248)
.+..|+.+|.|.-. ........ .. .......+|..|.++++. .+|+.++..+.++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 67788888876543 33322111 11 111345788999999988 89999988776654
No 389
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=34.58 E-value=1.7e+02 Score=24.61 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=36.1
Q ss_pred cEEEEEccCCeEE-EEECCCCc-------eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEE
Q psy16005 71 FYIASGDISGKVR-IWDTVNKE-------HILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKV 127 (248)
Q Consensus 71 ~~l~~~~~dg~i~-iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i 127 (248)
..++.|+.+|.|. +.....+. .+..........+|..|.++++.++|+++++.++.-
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~k 494 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQ 494 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEE
Confidence 3466788899875 33222211 111122233467899999999999999999988643
No 390
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=29.27 E-value=1.6e+02 Score=21.22 Aligned_cols=190 Identities=12% Similarity=0.037 Sum_probs=87.9
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.|..++...+-..++ .++.|+.|-.........-..-...|..++...+.. +.-. +|.|..|=......+. ...
T Consensus 64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~gqlg-~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDGQTT-VPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEE--EEEE-TTEEEEEECCTTSTTS-CCG
T ss_pred CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEE--EEEe-CCeEEEecCCCCCcCC-CCc
Confidence 455555544332232 377888886443211111111134677777654433 2234 8999999765432211 111
Q ss_pred cCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEECC---ce
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVENG---AK 165 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~ 165 (248)
. ....|..++...+. .++ ..++.+..|-... ...+..++..... .++. .++.++.|-.+ +.
T Consensus 138 ~-~~~~i~~i~~G~~~-~~~-l~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gql 211 (282)
T 3qhy_B 138 E-AQSGVTALDGGVYT-ALA-VKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQT 211 (282)
T ss_dssp G-GGSSEEEEEECSSE-EEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTT
T ss_pred c-CCCCeEEEEcccCE-EEE-EECCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCC
Confidence 1 12345555443322 222 2244445554321 1223333333322 2333 58999999732 22
Q ss_pred eeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc
Q psy16005 166 VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 166 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 228 (248)
-...+....+..++..... .++.. ||.|+.|=........ -...|.+++-...-.
T Consensus 212 g~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~~gq~~-----v~~~v~~iaaG~~h~ 266 (282)
T 3qhy_B 212 TVPTEALSGVSAIASGEWY-SLALK--NGKVIAWGSSRTAPSS-----VQSGVSSIEAGPNAA 266 (282)
T ss_dssp CCCGGGGSSCCEEEECSSC-EEEEE--TTEEEEESTTCCCCGG-----GSSCEEEEEECSSCE
T ss_pred CCCcccCCCceEEEcCCCE-EEEEE--CCEEEEecCCCCcccc-----CCCCcEEEEECcCeE
Confidence 1111222345566655443 33333 8889998655443321 123577777655433
No 391
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=28.70 E-value=1e+02 Score=20.46 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 218 VTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+.=+.|.|++.+.+.+...|...=.|+..+
T Consensus 112 lEp~eF~p~~~w~a~~~esG~f~dvDLse~ 141 (164)
T 1zso_A 112 IELIDFFPSNNFIVEDTKGKLYYDVNLSDQ 141 (164)
T ss_dssp EEEEEECCCSCEEEEETTSCEEEEECCTTS
T ss_pred eeeEEEecCCcEEEEECCCCcEEeeecCCC
Confidence 344689999999998866664444555544
No 392
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=28.63 E-value=2.2e+02 Score=22.53 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=0.0
Q ss_pred EEEEcCCCeEEEEE-----CCceeeeecccC-CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC----
Q psy16005 148 VAVGGADSKISIVE-----NGAKVSSLPIDY-EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP---- 217 (248)
Q Consensus 148 ~~~~~~~~~i~~~~-----~~~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---- 217 (248)
++....+|.|+.|+ ..-....+.... +........+..-++.+...|++....++ ++.......-....
T Consensus 111 lliVsptG~VryWesIs~~~~~~ei~~~L~~~E~vt~l~n~epaGfIlaTStgrl~~lsir-Gkp~l~~~~l~~~~G~l~ 189 (450)
T 1xks_A 111 VMVATREGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIPE-SSGKIHQHILPQGQGMLS 189 (450)
T ss_dssp EEEECTTCEEEEESCTTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEEEEEC-TTSCEEEEECTTCCCC--
T ss_pred EEEEcCCccEEEccccCCCCceEEEEecCCCCceEEEEeecCCceEEEEeccceEEEEEec-CCceEEEEEecCCCcccc
Q ss_pred --------------------eEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 218 --------------------VTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 218 --------------------v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
..++.+...++.+++.+..+ +..|++.++
T Consensus 190 gi~~~~sSl~G~~s~~~~ia~v~~~~~~g~r~v~ilT~~~-lq~W~l~~~ 238 (450)
T 1xks_A 190 GIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSN-ISKWELDDS 238 (450)
T ss_dssp ----------------CCCCEEEEEEETTTTEEEEEESSE-EEEEEECSS
T ss_pred cccccccccccccCCCcceEEEEeccCCCcEEEEEEcCCc-eEEEEecCC
No 393
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=27.71 E-value=1e+02 Score=25.92 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=36.5
Q ss_pred CEEEEEcCCCcEEEEEcCCCCC----CCcc-cccCCcCe-EEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 185 GLVAVGGADSKVHIYELNNKSL----SPKA-ELDHLGPV-TDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 185 ~~l~~~~~d~~v~i~d~~~~~~----~~~~-~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
..+..|+.+|.|.-.-+..... ...+ ......+| ..+.++++..+|+.++..+.++|
T Consensus 413 tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 413 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp EEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 3677888999877654443211 1111 11234566 68999999899999888766665
No 394
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=27.15 E-value=95 Score=18.43 Aligned_cols=28 Identities=21% Similarity=-0.072 Sum_probs=19.5
Q ss_pred CeEEEEECCCCceeeeeeccCCCCCeeE
Q psy16005 80 GKVRIWDTVNKEHILKNEFHPIGGPIKD 107 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 107 (248)
-.|.|||+.+|+....+.+.+..+.+-+
T Consensus 17 E~V~IvNvnNG~RfeTYvI~GerSG~I~ 44 (97)
T 1uhe_A 17 MKVEIVDVNNGERFSTYVILGKKRGEIC 44 (97)
T ss_dssp CEEEEEETTTCCEEEEECEEECSTTCEE
T ss_pred CEEEEEECCCCceEEEEEEeeccCCeEE
Confidence 4689999999988776666654433333
No 395
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=25.53 E-value=1.2e+02 Score=18.52 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=30.3
Q ss_pred ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 176 SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 176 ~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..+.+..+|.+++... ++. .+|...+.. ......+.+.++|.+++.. . .+|.-.+
T Consensus 63 ~~l~l~~dGNLVl~d~-~~~-~lW~S~~~~---------~~g~~~l~l~~~Gnlvl~~---~--~~W~Sg~ 117 (119)
T 1b2p_A 63 CRAVLQPDGVLVVITN-ENV-TVWQSPVAG---------KAGHYVLVLQPDRNVVIYG---D--ALWATQT 117 (119)
T ss_dssp CEEEECTTSCEEEECT-TCC-EEEECSCCC---------CSSCEEEEECTTSCEEEEE---S--EEEECCC
T ss_pred eEEEEccCCEEEEEeC-CCc-EEEcCCCCC---------CCCCEEEEEECCCcEEEEC---c--cEeCCCC
Confidence 3466777777666532 333 467654211 1123567778888755543 1 5776654
No 396
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=23.35 E-value=2.3e+02 Score=21.08 Aligned_cols=103 Identities=5% Similarity=-0.012 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCCeEEEEECCc-------eeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcC--CCCCCC----
Q psy16005 144 EHGLVAVGGADSKISIVENGA-------KVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELN--NKSLSP---- 208 (248)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~~-------~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~--~~~~~~---- 208 (248)
+...++..+.+|.++-..... -...+. -...+..+........++..+..|.+..+... .-....
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 467888889999888866211 111122 22233344444445577778889988888776 211110
Q ss_pred ---cccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 209 ---KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 209 ---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.........|.++...+++.+++..+..|.++.-.+..
T Consensus 188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 01112345677777666677888888999888776543
No 397
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A*
Probab=22.45 E-value=3e+02 Score=22.07 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=28.3
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCC-ceeeeeecCCcceEEEEECcCCcEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIA 74 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~ 74 (248)
.+..+. ++.|++|.+-.+|.|.-=.-..+ ...-.+..|.+.-.++.--+.+++|-
T Consensus 58 ~~~~lk-s~~G~yL~~d~~G~v~~~~~~~~~~~~f~~~~~~dG~w~lq~~~~g~yl~ 113 (493)
T 3llp_A 58 AAVCLR-SHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFG 113 (493)
T ss_dssp CCBCEE-CTTSCEEEECTTSCEEEEESSCCGGGCEEEEECTTSEEEEEETTTCCEEE
T ss_pred cEEEEe-cCCCcEeecCCCCcEEeCcccCCCCceEEEEECCCCeEEEEEcccCceec
Confidence 344455 67888888777887765322221 11222334444445555545555443
No 398
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=22.17 E-value=2.4e+02 Score=20.77 Aligned_cols=175 Identities=9% Similarity=-0.010 Sum_probs=85.9
Q ss_pred CCCCEEEEe-CCcEEEEEecCCCcee---------eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC---CC---
Q psy16005 27 PKGKNFLYT-NGNSVIIRNIENPAIS---------DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV---NK--- 90 (248)
Q Consensus 27 ~~~~~l~~~-~~~~v~v~~~~~~~~~---------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---~~--- 90 (248)
|+..+++.. .+|.|+--.+..-+.. ..+... +.+..+........++..+..|.++-.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 345555554 4888887765432211 112222 334444444444566666778887666542 21
Q ss_pred ---cee-eeeeccCCCCCeeEEEEec---CCCEEEEEeCCcE-EEEEc----------------cCCCCCceeEeCCCCC
Q psy16005 91 ---EHI-LKNEFHPIGGPIKDIAWSP---DNQRMISIVENGA-KVSSL----------------PIDYEPSSISLDHEHG 146 (248)
Q Consensus 91 ---~~~-~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~-~i~~~----------------~~~~~~~~~~~~~~~~ 146 (248)
..+ ....+.. ...|.++...+ ++.+++..+..|. +...+ ..+..+..+....++.
T Consensus 85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 100 0112222 34455554332 4566777776664 33222 1122222333333345
Q ss_pred EEEEEcCCCeEEEEECCc---------eeeeecc--cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 147 LVAVGGADSKISIVENGA---------KVSSLPI--DYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~---------~~~~~~~--~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
.++..+.+|....+...+ -+..+.. ...+..+..-.++..+++.+..|.....++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 566677777777766221 1122222 22344444444556778888899988888754
No 399
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=21.80 E-value=1.3e+02 Score=18.00 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=18.7
Q ss_pred CeEEEEECCCCceeeeeeccCCCCCe
Q psy16005 80 GKVRIWDTVNKEHILKNEFHPIGGPI 105 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~v 105 (248)
-.|.|||+.+|+....+.+.+..+.+
T Consensus 18 E~V~I~NvnNG~Rf~TYvI~GeGSG~ 43 (102)
T 3plx_B 18 EKVQVVNVNNGARFETYTIATQEEGV 43 (102)
T ss_dssp CEEEEEETTTCCEEEEECEEESSTTC
T ss_pred CEEEEEECCCCcEEEEEEEEcCCCCE
Confidence 46899999999887666666543334
No 400
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=21.61 E-value=3.1e+02 Score=23.16 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=35.3
Q ss_pred cEEEEEccCCeEEEEECCCCc--e-e-eeeeccCCCCCe-eEEEEecCCCEEEEEeCCcE
Q psy16005 71 FYIASGDISGKVRIWDTVNKE--H-I-LKNEFHPIGGPI-KDIAWSPDNQRMISIVENGA 125 (248)
Q Consensus 71 ~~l~~~~~dg~i~iwd~~~~~--~-~-~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~~~~ 125 (248)
..++.|+.+|.|.-.-+.... . + ....+.....+| ..+.++++...|+++++.++
T Consensus 413 tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V 472 (681)
T 3oky_A 413 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQV 472 (681)
T ss_dssp EEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEE
T ss_pred EEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEE
Confidence 456778899988755444321 1 1 112222234566 68999999899999888876
No 401
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=21.61 E-value=3.3e+02 Score=22.12 Aligned_cols=65 Identities=9% Similarity=0.170 Sum_probs=34.8
Q ss_pred ceEEEEECc-CC-cEEEEEccCCeEEEEECC-CCc--eeeeeeccCCCCCe-eEEEEecCCCEEEEEeCCcE
Q psy16005 60 AVNVAKYSP-SG-FYIASGDISGKVRIWDTV-NKE--HILKNEFHPIGGPI-KDIAWSPDNQRMISIVENGA 125 (248)
Q Consensus 60 ~v~~~~~s~-~~-~~l~~~~~dg~i~iwd~~-~~~--~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~~~~ 125 (248)
..+.++... ++ ..+..|+.+|.|.-.-+. .+. ......+ ....+| ..+.++++...|++++..++
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V 458 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSI-QQGSAVSRDLTFDGTFEHLYVMTQSTL 458 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEES-STTSCCCSCCEECTTSSEEEEECSSCE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeecc-CCCCcceeeEEEecCCCEEEEEeCCEE
Confidence 355555543 23 345567788887644443 211 1112223 234456 36777777777777666654
No 402
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=21.22 E-value=3.3e+02 Score=22.82 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=32.9
Q ss_pred EEEEEcCCCeEEEE-ECCc---eee---eecccCCCceEEEcCCC--CEEEEEcCCCcEEE
Q psy16005 147 LVAVGGADSKISIV-ENGA---KVS---SLPIDYEPSSISLDHEH--GLVAVGGADSKVHI 198 (248)
Q Consensus 147 ~~~~~~~~~~i~~~-~~~~---~~~---~~~~~~~~~~~~~s~~~--~~l~~~~~d~~v~i 198 (248)
.+..|+.+|.|.-. .... .+. .++...++..+.++++. .+|++++..+.+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 56678888876432 2211 111 22334567889999988 89999887765444
No 403
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=20.27 E-value=2.1e+02 Score=23.42 Aligned_cols=27 Identities=4% Similarity=-0.041 Sum_probs=22.9
Q ss_pred CcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 215 LGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
..+|..+.++++...|+.++.++.++|
T Consensus 469 ~~pI~~L~ls~~~~~LYV~s~~~V~qV 495 (565)
T 3oky_B 469 DKRIMGMQLDRASGSLYVAFSTCVIKV 495 (565)
T ss_dssp CCCCCEEEEEGGGTEEEEECSSCEEEE
T ss_pred CCceEEEEEcCCCCEEEEEecCeEEEe
Confidence 457889999999999999988877765
Done!