RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16005
(248 letters)
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 107 bits (267), Expect = 2e-28
Identities = 54/116 (46%), Positives = 70/116 (60%)
Query: 2 SYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV 61
+S +F +LPRT RG +VLG P G Y NG SV + + ++IYTEHS
Sbjct: 2 EFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQT 61
Query: 62 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM 117
VAK SPSG+Y ASGD+ G VRIWDT HILK GP+KDI+W +++R+
Sbjct: 62 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117
Score = 38.3 bits (87), Expect = 5e-04
Identities = 7/61 (11%), Positives = 19/61 (31%)
Query: 182 HEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241
+ +A AD + I+ + + + + + LV+ A+ +
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 242 Y 242
Sbjct: 308 V 308
Score = 36.8 bits (83), Expect = 0.002
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 65 KYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG 124
+SP G IAS ++IW+ + + + Q ++SI NG
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-RIEDQQLGIIWTKQALVSISANG 303
Score = 35.6 bits (80), Expect = 0.004
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 175 PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234
+ + S V+ + + + + +H T SPS Y + D
Sbjct: 20 AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGD 77
Query: 235 AHRKV 239
H V
Sbjct: 78 VHGNV 82
Score = 33.3 bits (74), Expect = 0.021
Identities = 5/59 (8%), Positives = 15/59 (25%), Gaps = 3/59 (5%)
Query: 31 NFLYTNG--NSVIIRNIENPA-ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
+ + ++ I N+ I + + S +G + +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 92.3 bits (227), Expect = 1e-22
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 2 SYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTE 56
S S K I P TQR L DP Y G S +R +++ P +
Sbjct: 2 SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 61
Query: 57 HSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHIL------KNEFHPIGGPIKDI 108
S V K+SP Y+ SGD SGKV +W + K+EF + GPI DI
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 109 AWSPDNQRMI 118
+W + +R+
Sbjct: 122 SWDFEGRRLC 131
Score = 33.4 bits (74), Expect = 0.018
Identities = 6/49 (12%), Positives = 13/49 (26%)
Query: 70 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMI 118
A+ +R+WD + + K + + I
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
Score = 30.7 bits (67), Expect = 0.14
Identities = 4/52 (7%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYS---PSGFYIASGDISGKVRIWD 86
++ + ++ +T + + I S + G + ++
Sbjct: 273 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
Score = 26.0 bits (55), Expect = 4.3
Identities = 17/134 (12%), Positives = 34/134 (25%), Gaps = 29/134 (21%)
Query: 103 GPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVEN 162
+++ P + G +D S + + G S ++ V
Sbjct: 18 NFTTHLSYDPTTNAIAYP--CGKSAFVRCLDDGDSKVPPVVQF----TGHGSSVVTTV-- 69
Query: 163 GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-------HL 215
S + G KV ++ S E++
Sbjct: 70 --------------KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 115
Query: 216 GPVTDCSFSPSNEY 229
GP++D S+
Sbjct: 116 GPISDISWDFEGRR 129
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 63.2 bits (152), Expect = 2e-12
Identities = 34/212 (16%), Positives = 68/212 (32%), Gaps = 17/212 (8%)
Query: 34 YTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93
+ ++ + ++ +T H V + + + G IAS VR+W KE
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178
Query: 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGA 153
+ H ++ I+W+P++ G + + G
Sbjct: 179 AELREH--RHVVECISWAPESSYSSISEATG-----------SETKKSGKPGPFLLSGSR 225
Query: 154 DSKISI--VENGAKVSSLPI-DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 210
D I + V G + +L D + + D + +++ NK
Sbjct: 226 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285
Query: 211 ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
H VT F + Y+V + V ++
Sbjct: 286 N-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 44.7 bits (104), Expect = 4e-06
Identities = 21/196 (10%), Positives = 59/196 (30%), Gaps = 13/196 (6%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
H V+ P+G +I S +++W+ + H ++ + + D
Sbjct: 97 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMVRPNQD 154
Query: 114 NQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDY 173
+ S + + E + +H H + + + SS+
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI--------SWAPESSYSSISEAT 206
Query: 174 EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEYLVA 232
+ + G D + ++ + + L H V F +++++
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMW--DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS 264
Query: 233 SDAHRKVVLYRVPDFE 248
+ + ++ +
Sbjct: 265 CADDKTLRVWDYKNKR 280
Score = 44.0 bits (102), Expect = 8e-06
Identities = 32/204 (15%), Positives = 64/204 (31%), Gaps = 17/204 (8%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP---- 112
H V + P + S +++WD + + H ++DI++
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH--TDSVQDISFDHSGKL 73
Query: 113 ---------DNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENG 163
E + + SI + +H + A K+ V+ G
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 164 AKVSSLPIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCS 222
V + E + ++ G L+A D V ++ + K + +H V S
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECIS 192
Query: 223 FSPSNEYLVASDAHRKVVLYRVPD 246
++P + Y S+A
Sbjct: 193 WAPESSYSSISEATGSETKKSGKP 216
Score = 42.4 bits (98), Expect = 2e-05
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
++ + + +N H V + + Y+ +G + V++W+
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 32.8 bits (73), Expect = 0.028
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 214 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
H PVT F P +V++ + ++ +
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD 50
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 58.6 bits (140), Expect = 8e-11
Identities = 23/194 (11%), Positives = 50/194 (25%), Gaps = 39/194 (20%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
+T H+ V +P SG ++WD H I I + P+
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPN 237
Query: 114 NQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDY 173
A G D+ + + A + +
Sbjct: 238 GN-------------------------------AFATGSDDATCRLFDLRADQELMTYSH 266
Query: 174 EP-----SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE 228
+ +S+S L+ G D ++++ + H V+ +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGM 325
Query: 229 YLVASDAHRKVVLY 242
+ + ++
Sbjct: 326 AVATGSWDSFLKIW 339
Score = 58.6 bits (140), Expect = 9e-11
Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 11/133 (8%)
Query: 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97
S + ++ +T H +N + P+G A+G R++D + ++
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 98 FHPIGGPIKDIAWSPDNQRMISI----------VENGAKVSSLPIDYEP-SSISLDHEHG 146
I I +++S + +++ + L S + + +
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 147 LVAVGGADSKISI 159
VA G DS + I
Sbjct: 326 AVATGSWDSFLKI 338
Score = 48.6 bits (114), Expect = 2e-07
Identities = 21/203 (10%), Positives = 48/203 (23%), Gaps = 20/203 (9%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116
H + + + S GK+ IWD+ + + + A++P
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNY 111
Query: 117 MISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA------------ 164
+ + E + G + +
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 165 -----KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219
+ + S+SL + L G D+ ++++ H +
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDIN 230
Query: 220 DCSFSPSNEYLVASDAHRKVVLY 242
F P+ L+
Sbjct: 231 AICFFPNGNAFATGSDDATCRLF 253
Score = 44.3 bits (103), Expect = 6e-06
Identities = 7/52 (13%), Positives = 20/52 (38%)
Query: 35 TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
+ + + + + + H V+ + G +A+G ++IW+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 36.6 bits (83), Expect = 0.002
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 4/110 (3%)
Query: 143 HEHGLVAVGGADSKISI--VENGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHI- 198
+ L G D+ + V G + + + ++I A G D+ +
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 199 YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
++ L + + + +T SFS S L+A ++ +
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 31.2 bits (69), Expect = 0.090
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 214 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
HL + + + LV++ K++++
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN 88
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 55.6 bits (132), Expect = 1e-09
Identities = 41/285 (14%), Positives = 92/285 (32%), Gaps = 49/285 (17%)
Query: 12 LPRTQRGQ------PIVLGGDPKGKNFLYT--NGNSVIIRNIENPAISDI----YTEHSC 59
+P QR P +L D + + I+ N P D+ +H+
Sbjct: 4 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTS 63
Query: 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG----------------G 103
V K+S G Y+A+G + +++ + + +
Sbjct: 64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122
Query: 104 PIKDIAWSPDNQRMIS-------------IVENGAKVSSLPIDYEPSSISLDHEHGLVAV 150
I+ + +SPD + + + + + D + +
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 151 GGADSKISIVENGAKVSSLPIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPK 209
G +I + G +L I+ +++++ G +A G D V +++ L +
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 210 AELD------HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
+ + H V F+ + +V+ R V L+ + +
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287
Score = 48.6 bits (114), Expect = 2e-07
Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 30/219 (13%)
Query: 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97
+V I ++ S + VA G YIA+G + VR+WD+ + + +
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244
Query: 98 FHPIG-----GPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGG 152
+ + ++ D Q ++S + S+ L +
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-------------SVKLWNLQNANNKSD 291
Query: 153 ADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL 212
+ + S +V+ + S++ + G D V ++ KS +P L
Sbjct: 292 SKTPNSGTC---EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK--KSGNPLLML 346
Query: 213 D-HLGPVTDC------SFSPSNEYLVASDAHRKVVLYRV 244
H V S P K +++
Sbjct: 347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
Score = 40.6 bits (93), Expect = 1e-04
Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 30/222 (13%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ- 115
+ +SP G ++A+G +RIWD N++ ++ + H D S D
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179
Query: 116 --------RMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISI--VENGAK 165
R+ + ++ D + + +A G D + + E G
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239
Query: 166 VSSLPIDYEP--------SSISLDHEHGLVAVGGADSKVHIYELNNKSLS---------- 207
V L + E S+ + V G D V ++ L N +
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 208 -PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
+ H V + + ++EY+++ R V+ +
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 54.5 bits (129), Expect = 3e-09
Identities = 10/60 (16%), Positives = 28/60 (46%)
Query: 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMIS 119
++ ++ IA + +V I++ + + +E G + + W+PD+ R+++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Score = 52.6 bits (124), Expect = 1e-08
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 176 SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEYLVASD 234
S + + + +A+ + +VHIYE + EL H G VT ++P + +V
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG 70
Query: 235 AHRKVVLY 242
R ++
Sbjct: 71 TDRNAYVW 78
Score = 41.4 bits (95), Expect = 5e-05
Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 3/101 (2%)
Query: 27 PKGKNFLY-TNGNSVIIRNIENPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVR 83
N + V I ++ EH+ V ++P I +
Sbjct: 17 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY 76
Query: 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG 124
+W + I + + W+P+ ++ +
Sbjct: 77 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 117
Score = 31.4 bits (69), Expect = 0.10
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 34 YTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG----FYIASGDISGKVRIWDTVN 89
+ N + A + + + H +V+ G + + G + IWD +
Sbjct: 301 FQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
Query: 90 KEHILKN 96
E LK+
Sbjct: 361 LESALKD 367
Score = 31.4 bits (69), Expect = 0.11
Identities = 3/31 (9%), Positives = 13/31 (41%)
Query: 214 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
+ P++ +++ + + +V +Y
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEK 36
Score = 30.6 bits (67), Expect = 0.16
Identities = 30/228 (13%), Positives = 56/228 (24%), Gaps = 35/228 (15%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE----------------HILKNE 97
V + P+ +A+G K RI+ KE L E
Sbjct: 137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 196
Query: 98 FHPIGGPIKDIAWSPDNQRMISIVENG----------AKVSSLPIDYEPSSISLDHEHGL 147
G + + +S + R+ + + V++L + P
Sbjct: 197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS 256
Query: 148 VAVGGADSKISIV---ENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK 204
+ G D + K+S P S D K +
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE--GSA 314
Query: 205 SLSPKAELDHLGPVTDCSFSP----SNEYLVASDAHRKVVLYRVPDFE 248
+ + H V+ S + + ++ V E
Sbjct: 315 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 52.1 bits (123), Expect = 1e-08
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 3/94 (3%)
Query: 26 DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85
P G+ +S + N H V K++ G + S + W
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Query: 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMIS 119
T I +++ + S D++ +++
Sbjct: 293 RTPYGASIFQSKES---SSVLSCDISVDDKYIVT 323
Score = 47.9 bits (112), Expect = 3e-07
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 56 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN---KEHILKNEFHPIGGPIKDIAWSP 112
H V S ++ +G G V++WD + K + + + I+ P
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 113 DNQRMI 118
D +I
Sbjct: 108 DGCTLI 113
Score = 46.7 bits (109), Expect = 9e-07
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 172 DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231
+ S+ + G D+ ++ + + + V C S ++Y+V
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRT--PYGASIFQSKESSSVLSCDISVDDKYIV 322
Query: 232 ASDAHRKVVLYRV 244
+K +Y V
Sbjct: 323 TGSGDKKATVYEV 335
Score = 38.6 bits (88), Expect = 4e-04
Identities = 16/134 (11%), Positives = 38/134 (28%), Gaps = 12/134 (8%)
Query: 80 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI------- 132
G + + + + H I + + P + + +E+
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261
Query: 133 ---DYEPSSISLDHEHGLVAVGGADSKISI--VENGAKVSSLPIDYEPSSISLDHEHGLV 187
+ S+ + G D+ ++ GA + S + + +
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321
Query: 188 AVGGADSKVHIYEL 201
G D K +YE+
Sbjct: 322 VTGSGDKKATVYEV 335
Score = 37.5 bits (85), Expect = 0.001
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88
++ S +V S YI +G K +++ +
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 36.3 bits (82), Expect = 0.002
Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 159 IVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN----KSLSPKAELDH 214
I + ++++L ++++ + V GG V ++++++ +S L+
Sbjct: 38 IPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR 96
Query: 215 LGPVTDCSFSPSNEYLVASDAHR 237
+ C P L+
Sbjct: 97 DNYIRSCKLLPDGCTLIVGGEAS 119
Score = 28.6 bits (62), Expect = 0.68
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 212 LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246
L+H V + S ++ + V ++ +
Sbjct: 48 LNHGEVVCAVTISNPTRHV-YTGGKGCVKVWDISH 81
Score = 28.2 bits (61), Expect = 0.85
Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 18/240 (7%)
Query: 26 DPKGKNFLYTNGN-SVIIRNIEN-----PAISDIYTEHSCAVNVAKYSPSGFYIASGDIS 79
+ +YT G V + +I + P + K P G + G +
Sbjct: 60 SNPTR-HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118
Query: 80 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-----------AKVS 128
+ IWD +K E +A SPD++ S +G
Sbjct: 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178
Query: 129 SLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVA 188
S I + ++ + GG D+ + + D+ SL +
Sbjct: 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW 238
Query: 189 VGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
+ ++ L+ H V F+ ++ V++ + +R P
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298
Score = 26.3 bits (56), Expect = 4.3
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 102 GGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHG 146
G + + S + + + + KV + S +S
Sbjct: 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLN 95
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 47.5 bits (111), Expect = 4e-07
Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDT-VNKEHILKNEFHPIGGPIKDIAWSPDNQ 115
++ K PS + G + ++ + +++ + P+ + +
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69
Query: 116 RMI 118
I
Sbjct: 70 LQI 72
Score = 43.7 bits (101), Expect = 8e-06
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 176 SSISLDHEHGLVAVGGADSKVHIYEL--NNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232
S I + L+ + D + +Y+ K++ L + P+ C+F + + +
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Score = 39.1 bits (89), Expect = 3e-04
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 114
T + VN ++SP ++ + G + W+ ++ I + + +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF---NEDSVVKIACSD 304
Query: 115 QRMISIVEN----GAKVSSLPIDYEPSSISL--DHEH 145
+ + I+ SSI + D+E+
Sbjct: 305 NILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYEN 341
Score = 36.4 bits (82), Expect = 0.002
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 173 YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232
Y +SI H + G+D + + L + + + S+ L
Sbjct: 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--KKIKNFAKFNEDSVVKIACSDNILCL 309
Query: 233 SDAHRKVVLYRVPD 246
+ + D
Sbjct: 310 ATSDDTFKTNAAID 323
Score = 29.8 bits (65), Expect = 0.26
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 214 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
++D PS L+ + + +Y+
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKF 40
Score = 25.2 bits (53), Expect = 8.4
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 105 IKDIAWSPDNQRMIS 119
I DI P ++
Sbjct: 14 ISDIKIIPSKSLLLI 28
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 47.5 bits (111), Expect = 6e-07
Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 16/90 (17%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116
+V + Y G + +D ++ + + D+ S D +
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK------VTEVKNNLTDLRLSADRKT 328
Query: 117 MISI----------VENGAKVSSLPIDYEP 136
++ +E ++ D P
Sbjct: 329 VMVRKDDGKIYTFPLEKPEDERTVETDKRP 358
Score = 42.2 bits (97), Expect = 3e-05
Identities = 17/191 (8%), Positives = 44/191 (23%), Gaps = 21/191 (10%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
T + + + D V + P I P
Sbjct: 174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP-----FVIPLIPG 228
Query: 114 NQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDY 173
+ +V + D + + V D ++ I + +
Sbjct: 229 SPNPTKLVPRSMTSEAGEYDLN----DMYKRSSPINVDPGDYRMIIPLESSILI------ 278
Query: 174 EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233
S + Y++ + ++ + +TD S + ++
Sbjct: 279 -YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----EVKNNLTDLRLSADRKTVMVR 332
Query: 234 DAHRKVVLYRV 244
K+ + +
Sbjct: 333 KDDGKIYTFPL 343
Score = 32.9 bits (73), Expect = 0.027
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 66 YSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG 124
+SP G IA G+ I D + E I+ + D +
Sbjct: 10 FSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPE----PLRIRYVRRGGDTKVAFIHGTRE 64
Query: 125 AKV 127
Sbjct: 65 GDF 67
Score = 32.9 bits (73), Expect = 0.033
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91
TE + + S + GK+ + E
Sbjct: 311 TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 46.8 bits (109), Expect = 1e-06
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 115
H +V Y+ +G +R++D++NK+ +L+ H G + + ++
Sbjct: 11 HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGGI 66
Score = 43.0 bits (99), Expect = 2e-05
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 174 EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233
S+I+ + + V G++++ +IY L + L L + +F + A
Sbjct: 283 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAV 341
Query: 234 DAHRKVVLYRVPDF 247
+ + L + DF
Sbjct: 342 EKDGQSFL-EILDF 354
Score = 40.3 bits (92), Expect = 1e-04
Identities = 6/62 (9%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
H+ + + S + SG + I++ + ++ I + +
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN-LRSGKLVHANILKDADQIWSVNFKGK 335
Query: 114 NQ 115
Sbjct: 336 TL 337
Score = 38.0 bits (86), Expect = 8e-04
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 179 SLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEYLVASDAH 236
L E V G D + +Y+ NK +L H G V ++ + S
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKF--LLQLSGHDGGVWALKYAHGGILVSGSTDR 74
Score = 25.6 bits (54), Expect = 6.2
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 214 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
H+ V C + Y++ + + +Y + +
Sbjct: 11 HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKK 44
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 44.8 bits (104), Expect = 4e-06
Identities = 29/212 (13%), Positives = 59/212 (27%), Gaps = 22/212 (10%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
+ V G + SG V++WD + + + H + + D
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN----RVYSLQFD 186
Query: 114 NQRMISIVENG---------AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA 164
++S + ++ + ++ + ++ G ADS + I +
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT 246
Query: 165 KVSSLPIDYEPSSISLDHEH----GLVAVGGADSKVHIYELNN----KSLSPKAELDHLG 216
+ S V D V +++L ++L G
Sbjct: 247 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 306
Query: 217 PVTDCSFSPSNEYL-VASDAHRKVVLYRVPDF 247
V S + V S + V DF
Sbjct: 307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
Score = 42.9 bits (99), Expect = 1e-05
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 3/65 (4%)
Query: 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP 112
+ H V G I SG +++W V + + H G +
Sbjct: 11 VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGVWSSQMRD 67
Query: 113 DNQRM 117
+
Sbjct: 68 NIIIS 72
Score = 40.6 bits (93), Expect = 9e-05
Identities = 20/159 (12%), Positives = 46/159 (28%), Gaps = 15/159 (9%)
Query: 11 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG 70
T T +G + + + IR + + I+T +
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227
Query: 71 FYIASGDISGKVRIWDTVNKEHILKNE-------FHPIGGPIKDIAWSPDNQRMISI--V 121
+ SG+ V+IWD + + + K+ + + + + +
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287
Query: 122 ENGAKVSSLPIDYEP------SSISLDHEHGLVAVGGAD 154
+ G + +L I + + AVG +
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326
Score = 27.5 bits (59), Expect = 1.4
Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 202 NNKSLSPKAELD-HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
L L H V C +V+ + ++ +
Sbjct: 2 RRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGK 48
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 42.7 bits (98), Expect = 2e-05
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK-NEFHPIGGPIKDIAWSPDNQ 115
H+ A+ S G + S D G + WD + H I I +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH--ATMITGIKTTSKGD 68
Query: 116 RM 117
Sbjct: 69 LF 70
Score = 36.5 bits (82), Expect = 0.002
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 182 HEHGLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVASDAHRKVV 240
++ +A G D+ V ++ +N S P H + + +V++ +
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293
Query: 241 LYRVP 245
+ VP
Sbjct: 294 FWNVP 298
Score = 33.0 bits (73), Expect = 0.026
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 38 NSVIIRNIENPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
NSVI+ N+ P+ I H+ + + + I S ++ W+
Sbjct: 246 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 32.6 bits (72), Expect = 0.031
Identities = 10/66 (15%), Positives = 22/66 (33%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
+T H+ V +SP +A+G + V +W+ + +
Sbjct: 220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN 279
Query: 114 NQRMIS 119
++S
Sbjct: 280 ETTIVS 285
Score = 32.6 bits (72), Expect = 0.035
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 214 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
H +T S S + L ++DA + + +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDI 41
Score = 26.5 bits (56), Expect = 3.1
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 103 GPIKDIAWSPDNQRMIS 119
I ++ S D + + S
Sbjct: 13 KAITALSSSADGKTLFS 29
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 40.9 bits (94), Expect = 7e-05
Identities = 19/175 (10%), Positives = 49/175 (28%), Gaps = 9/175 (5%)
Query: 67 SPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAK 126
Y+ + + + D + + K+ P +PDN+ + +
Sbjct: 5 KAGHEYMIVTNYPNNLHVVDVASDT-VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 127 VSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGL 186
+ + +D ++ + VG + +I +G +V + + + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 187 VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241
+ V + P V + VA K+ +
Sbjct: 124 LEV--------FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDV 170
Score = 33.6 bits (75), Expect = 0.016
Identities = 6/72 (8%), Positives = 20/72 (27%), Gaps = 4/72 (5%)
Query: 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP 112
+ + + SP G ++ +D ++ I + + +A+
Sbjct: 246 EFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLI---KAANLDHTYYCVAFDK 301
Query: 113 DNQRMISIVENG 124
++
Sbjct: 302 KGDKLYLGGTFN 313
Score = 32.4 bits (72), Expect = 0.043
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 27 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
PK N +Y N + +++ + VA + G + G + +++
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVA-FDKKGDKLYLGGTFNDLAVFN 319
Query: 87 TVNKEHI 93
E +
Sbjct: 320 PDTLEKV 326
Score = 32.0 bits (71), Expect = 0.056
Identities = 7/63 (11%), Positives = 21/63 (33%)
Query: 178 ISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR 237
+L H + V + +H+ ++ + ++ + +P N + H
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 238 KVV 240
+
Sbjct: 62 GDI 64
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 40.6 bits (93), Expect = 1e-04
Identities = 25/116 (21%), Positives = 33/116 (28%), Gaps = 6/116 (5%)
Query: 46 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH--PIGG 103
+ S HS V ++ SG + S GK+R WD KE I H I
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336
Query: 104 PIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISI 159
+A + K S + D L V D I
Sbjct: 337 EEDILAVDEHGDSLAEPGVFDVKFLKKGWR---SGMGADLNESLCCV-CLDRSIRW 388
Score = 35.2 bits (79), Expect = 0.006
Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 26/153 (16%)
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI--------GGPIKDIAWSP 112
+ + + +A+ SG + + ++ K F + + W
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 113 D-----NQRMISIVENG-AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKV 166
+ R+++ G + + S+ + + + G + S +
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG--TVESPMTPSQFA 187
Query: 167 SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIY 199
+S+ I E GL+A G + V I
Sbjct: 188 TSVDI----------SERGLIATGFNNGTVQIS 210
Score = 31.0 bits (68), Expect = 0.12
Identities = 18/135 (13%), Positives = 34/135 (25%), Gaps = 24/135 (17%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116
H + S SGD G +++WD ++ +
Sbjct: 13 HDADIFSVSACNSFTVSCSGD--GYLKVWDNKLLDNENPKDK------------------ 52
Query: 117 MISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISI--VENGAKVSSLPIDYE 174
S K +D + E LVA + + + + +
Sbjct: 53 --SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL 110
Query: 175 PSSISLDHEHGLVAV 189
S +H A+
Sbjct: 111 DLLDSDMKKHSFWAL 125
Score = 29.8 bits (65), Expect = 0.34
Identities = 21/184 (11%), Positives = 44/184 (23%), Gaps = 16/184 (8%)
Query: 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 114
S S G IA+G +G V+I + + E + S
Sbjct: 181 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239
Query: 115 QRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYE 174
S++ + + + ++ SS +
Sbjct: 240 SPQGSLLAIA---HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296
Query: 175 PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDC----SFSPSNEY 229
+ G D K+ +++ K L+ H + + +
Sbjct: 297 FNDSGETL-----CSAGWDGKLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDS 349
Query: 230 LVAS 233
L
Sbjct: 350 LAEP 353
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 39.6 bits (91), Expect = 2e-04
Identities = 20/195 (10%), Positives = 44/195 (22%), Gaps = 15/195 (7%)
Query: 12 LPRTQRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAIS--DIYTEHSCAVNVAKY 66
++ + P G + G ++ + N + + +
Sbjct: 109 KMLSEIDTAACVLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPAF 168
Query: 67 SPSGFY---IASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123
+ Y G VR D + + + + W P + ++
Sbjct: 169 VNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRPGGMQQTAVQAK 228
Query: 124 GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISI--VENGAKVSSLPIDYEPSSISLD 181
+ L S D + + KV L +S D
Sbjct: 229 QNRYYVLMHKGTDGS-HKDPGTQVWVYDLKSKQRVARWDLAQQKVEPLV----SIQVSED 283
Query: 182 HEHGLVAVGGADSKV 196
+ + V
Sbjct: 284 DKPLFYGLTATSDLV 298
Score = 39.2 bits (90), Expect = 2e-04
Identities = 16/208 (7%), Positives = 46/208 (22%), Gaps = 24/208 (11%)
Query: 63 VAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG---GPIKDIA---------- 109
+ + G + V I D +H + P
Sbjct: 31 SVVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHAQHVPSPYNTAFSADGKRLY 90
Query: 110 -WSPDNQRMISIVENGAKVSSLPIDY-EPSSISLDHEHGLVAVGGADSKISIVENGAKVS 167
+ +++++ +K ID + A+ + +++ +
Sbjct: 91 VANITPAASVTVIDAVSKKMLSEIDTAACVLAYPAGDDRFTALCESGKALTVTLDANGKE 150
Query: 168 SLPIDYE--------PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPV 218
+ + P+ ++ G V + + +
Sbjct: 151 AKRTMSDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAE 210
Query: 219 TDCSFSPSNEYLVASDAHRKVVLYRVPD 246
+ P A A + +
Sbjct: 211 RAEGWRPGGMQQTAVQAKQNRYYVLMHK 238
Score = 28.0 bits (61), Expect = 1.0
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 17/133 (12%)
Query: 102 GGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE 161
GG A +PD + + ++ S + ++ D IV
Sbjct: 16 GGFGPGFAIAPDRKASVVATTYFSRG---------SHGTRTDVVEIIDNTTLDHAGEIVI 66
Query: 162 NGAKVSSLPIDYEPSSISLDHEHGL-VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTD 220
+P + G + V + ++ S +E+D
Sbjct: 67 PAKHAQHVPS----PYNTAFSADGKRLYVANITPAASVTVIDAVSKKMLSEIDT---AAC 119
Query: 221 CSFSPSNEYLVAS 233
P+ + +
Sbjct: 120 VLAYPAGDDRFTA 132
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 37.2 bits (84), Expect = 0.001
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 175 PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234
+ + E LVA G D+ + IY + KA H V + + + LV+S
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSG 276
Query: 235 AHRKVVLYRV 244
A + + V
Sbjct: 277 ADACIKRWNV 286
Score = 36.5 bits (82), Expect = 0.002
Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
+ + +A+G + + I+ I+K + + ++ W
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK-ALNAHKDGVNNLLWETP 269
Query: 114 NQ 115
+
Sbjct: 270 ST 271
Score = 35.3 bits (79), Expect = 0.004
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 38 NSVIIRNIENPA-ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88
++ I +++ P I H VN + + S ++ W+ V
Sbjct: 237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNVV 287
Score = 34.5 bits (77), Expect = 0.008
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 11/59 (18%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 115
H+ + +P + SG G++ W + I + S +
Sbjct: 12 HNKGITALTVNP----LISGSYDGRIMEWS-------SSSMHQDHSNLIVSLDNSKAQE 59
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 37.1 bits (84), Expect = 0.001
Identities = 8/57 (14%), Positives = 15/57 (26%)
Query: 72 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVS 128
YI + K+ + DT G +P + + V +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLV 59
Score = 32.5 bits (72), Expect = 0.037
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 30 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89
K + N + ++E A +V S G + G G + +D
Sbjct: 252 KTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVN-VSTDGSTVWLGGALGDLAAYDAET 310
Query: 90 KEHI 93
E
Sbjct: 311 LEKK 314
Score = 26.7 bits (57), Expect = 2.8
Identities = 8/99 (8%), Positives = 19/99 (19%), Gaps = 5/99 (5%)
Query: 26 DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85
D + + + +P+ + +
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYN--VLESF 265
Query: 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG 124
D I + P+ + S D + G
Sbjct: 266 DLEKNASI---KRVPLPHSYYSVNVSTDGSTVWLGGALG 301
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 37.1 bits (84), Expect = 0.001
Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 72 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLP 131
YIAS + S ++ +W+ ++ + + + G ++ + SPD + + V +V +
Sbjct: 7 YIASPE-SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
Query: 132 IDYEPSSISLDHEHGLVA 149
I + +++ E L
Sbjct: 66 IAPDDGALTFAAESALPG 83
Score = 31.0 bits (68), Expect = 0.13
Identities = 14/112 (12%), Positives = 35/112 (31%), Gaps = 4/112 (3%)
Query: 50 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH-PIGGPIKDI 108
+ + +++ A ++ A + + ++ +L E P +
Sbjct: 222 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGF 281
Query: 109 AWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIV 160
+ +I+ + +S I E + E G AVG + +
Sbjct: 282 NVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH---EKGRYAVGQGPMWVVVN 330
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 37.1 bits (85), Expect = 0.002
Identities = 25/192 (13%), Positives = 56/192 (29%), Gaps = 20/192 (10%)
Query: 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGP---IKDIAWSPDNQR 116
AV++++ S SG Y+ GKV + D KE E +++
Sbjct: 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 117 MISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPS 176
I+ + +D E + + + +
Sbjct: 123 AIAGAYWPPQYVI--MDGETLEPKKIQSTRGMTYDEQE--------------YHPEPRVA 166
Query: 177 SISLDHEHGLVAVGGADS-KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA 235
+I H V ++ K+ + + + + E+ + D S+ Y + +
Sbjct: 167 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN 226
Query: 236 HRKVVLYRVPDF 247
R ++
Sbjct: 227 ARNKLVVIDTKE 238
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 36.7 bits (83), Expect = 0.002
Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 14/121 (11%)
Query: 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD----- 107
+ T + +A + SG +R+WD + E H
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR 230
Query: 108 -IAWSPDNQRMISIVENGAKVSSLPIDYEPSSI--------SLDHEHGLVAVGGADSKIS 158
++ + D + + + + ++ L + + D I
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTIL 290
Query: 159 I 159
I
Sbjct: 291 I 291
Score = 34.1 bits (76), Expect = 0.011
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 99
+E S V I SG ++IWD E H
Sbjct: 12 SETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH 54
Score = 33.7 bits (75), Expect = 0.015
Identities = 24/181 (13%), Positives = 54/181 (29%), Gaps = 21/181 (11%)
Query: 80 GKVRIWDTVNKEHILKNEFHPIG---------GPIKDIAWSPDNQRMISIVENGAKVSSL 130
+ +WD + I ++ S D + V +L
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174
Query: 131 PIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAV 189
++ L + LV G +D+ I + + + +E + ++ +
Sbjct: 175 N-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS 233
Query: 190 GGADSKVHIYELNNKSLSPKAELD--------HLGPVTDCSFSPSNEYLVASDAHRKVVL 241
G D K+ +++L H G V F +V+S +++
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILI 291
Query: 242 Y 242
+
Sbjct: 292 W 292
Score = 32.9 bits (73), Expect = 0.028
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI 78
++ G GK ++ ++ R EHS V + F I S
Sbjct: 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF--RLQFDEFQIVSSSH 285
Query: 79 SGKVRIWD 86
+ IWD
Sbjct: 286 DDTILIWD 293
Score = 31.0 bits (68), Expect = 0.12
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 9/112 (8%)
Query: 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA 74
T G + + + + IR + + + V I
Sbjct: 173 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV 232
Query: 75 SGDISGKVRIWDTVNKEHILKNEFHPI-------GGPIKDIAWSPDNQRMIS 119
SG GK+++WD V G + + + D +++S
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVS 282
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 33.3 bits (74), Expect = 0.019
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 72 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVS 128
YIA+ + S + + D + + P+G SPD ++ + VS
Sbjct: 5 YIANSE-SDNISVIDVTSNKVTAT---IPVGSNPMGAVISPDGTKVYVANAHSNDVS 57
Score = 26.8 bits (57), Expect = 2.8
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 57 HSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHI 93
+A +P G + + V + DT
Sbjct: 243 GPDPAGIA-VTPDGKKVYVALSFCNTVSVIDTATNTIT 279
Score = 26.0 bits (55), Expect = 4.4
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 100 PIGGPIKDIAWSPDNQRM---------ISI--VENGAKVSSLPIDYEPSSI 139
P+G IA +PD +++ +S+ +++ + P +
Sbjct: 241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYAS 291
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 32.2 bits (72), Expect = 0.046
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 7/115 (6%)
Query: 20 PIVLGGDPKGKNFLY---TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG 76
P D N + + + + ++ I + AV++++ S SG Y+
Sbjct: 21 PKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVI 79
Query: 77 DISGKVRIWDTVNKEHILKNEFHPIGGP---IKDIAWSPDNQRMISIVENGAKVS 128
++ + D KE E +++ I+ + +
Sbjct: 80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFA 134
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 31.5 bits (70), Expect = 0.086
Identities = 9/80 (11%), Positives = 18/80 (22%), Gaps = 15/80 (18%)
Query: 74 ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI------------V 121
+ + + G I + D
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPI---SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344
Query: 122 ENGAKVSSLPIDYEPSSISL 141
+ SS+ +D P S+S+
Sbjct: 345 ASDQDQSSVELDKGPESLSV 364
Score = 30.7 bits (68), Expect = 0.13
Identities = 23/202 (11%), Positives = 56/202 (27%), Gaps = 24/202 (11%)
Query: 63 VAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD-----IAWSPDNQRM 117
A S S A G + V ++D V I E I + +
Sbjct: 79 FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL 138
Query: 118 ISIVENGAKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVENGAKVS 167
+ + + + L + I + ++ + A +
Sbjct: 139 LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSC-PASLAASDLAAAPA 197
Query: 168 SLPIDYEPSSISLDHE-------HGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVT 219
+ I + + + + + V S + ++ + KA +D +
Sbjct: 198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRK 257
Query: 220 DCSFSPSNEYLVASDAHRKVVL 241
+F + +VA + ++
Sbjct: 258 ADNFRSAGFQMVAKLKNTDGIM 279
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 29.8 bits (65), Expect = 0.33
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 3/66 (4%)
Query: 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP 112
H + S V + D E + +G I I S
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL---AKFEMGHEIDSINVSQ 309
Query: 113 DNQRMI 118
D + ++
Sbjct: 310 DEKPLL 315
Score = 29.0 bits (63), Expect = 0.54
Identities = 5/78 (6%), Positives = 18/78 (23%), Gaps = 9/78 (11%)
Query: 61 VNVAKYSPSGFYI-----ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 115
+ +P + A + + D I + + + D
Sbjct: 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN----PVVADDGS 59
Query: 116 RMISIVENGAKVSSLPID 133
+ ++++
Sbjct: 60 FIAHASTVFSRIARGERT 77
Score = 26.7 bits (57), Expect = 2.7
Identities = 12/101 (11%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG--FY 72
+ I L D + + T V++ + + + ++ S
Sbjct: 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSIN-VSQDEKPLL 315
Query: 73 IASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
A + I D + E + + +G + I +
Sbjct: 316 YALSTGDKTLYIHDAESGEEL--RSVNQLGHGPQVITTADM 354
Score = 25.9 bits (55), Expect = 5.8
Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 5/103 (4%)
Query: 63 VAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH-----PIGGPIKDIAWSPDNQRM 117
+A S IA G+ + V ++D V E +G + +PD + +
Sbjct: 61 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL 120
Query: 118 ISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIV 160
+ + A + + + + +
Sbjct: 121 LFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM 163
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 27.3 bits (60), Expect = 1.2
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 139 ISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPS--SISLDHEHGLVAVGGADSKV 196
I L EHG + VG + K+ ++ L + + I LD +A
Sbjct: 92 IELSSEHGFLTVGCREGKVFAASTV-PMTPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGC 150
Query: 197 HIY 199
HIY
Sbjct: 151 HIY 153
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 26.1 bits (56), Expect = 4.4
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 182 HEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241
+ L+A + + I+ + + +S D + ++AS +R + +
Sbjct: 210 NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYR-LYI 268
Query: 242 YR 243
YR
Sbjct: 269 YR 270
>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central
domain {Maize (Zea mays) [TaxId: 4577]}
Length = 135
Score = 25.4 bits (55), Expect = 4.5
Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 9/123 (7%)
Query: 69 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV-ENGAKV 127
+G + G G+V + + + + + I+ E G
Sbjct: 15 TGLPASPGAAVGQVVFTAEDAEAWHSQGKAAILVRAETSPEDVGGMHAAVGILTERGGMT 74
Query: 128 SSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLV 187
S + + G V G + E +SL+ G V
Sbjct: 75 SHAAV--------VARGWGKCCVSGCSGIRVNDAEKLVTIGGHVLREGEWLSLNGSTGEV 126
Query: 188 AVG 190
+G
Sbjct: 127 ILG 129
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 470
Score = 26.2 bits (56), Expect = 4.7
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 64 AKYSPSGFYIASGDISGKVRIWD--TVNKEHILKNE-FHPIGGPIKDIAWSPDNQRMI 118
++ Y+ + + +++ N L+N F G I D + SPD Q ++
Sbjct: 22 LRWISDHEYLYKQE--NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFIL 77
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 91
Score = 24.8 bits (54), Expect = 5.1
Identities = 8/46 (17%), Positives = 12/46 (26%)
Query: 63 VAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDI 108
V S GF + G + V P +D+
Sbjct: 11 VVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDV 56
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 271
Score = 25.0 bits (54), Expect = 9.9
Identities = 7/50 (14%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 160 VENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK 209
+ S+ +S+SL + L+ + + V +++L+++++
Sbjct: 16 ENLDSLKESII-----TSLSLLPPNALIGLITYGNVVQLHDLSSETIDRC 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.393
Gapped
Lambda K H
0.267 0.0558 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 926,531
Number of extensions: 42445
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 121
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.2 bits)