Query psy16008
Match_columns 236
No_of_seqs 183 out of 1315
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 18:36:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2322|consensus 100.0 6.2E-37 1.3E-41 267.8 11.2 172 1-218 56-237 (237)
2 PRK10447 HflBKC-binding inner 100.0 1.5E-34 3.3E-39 253.0 21.9 139 98-236 69-219 (219)
3 cd06181 BI-1-like BAX inhibito 100.0 1.9E-34 4.1E-39 248.8 22.1 185 2-233 15-212 (212)
4 COG0670 Integral membrane prot 100.0 4E-30 8.6E-35 227.1 21.3 182 2-232 33-228 (233)
5 PF01027 Bax1-I: Inhibitor of 100.0 3.2E-29 6.8E-34 213.3 21.3 182 2-230 13-205 (205)
6 KOG1629|consensus 99.8 4.4E-18 9.6E-23 146.1 14.2 135 100-234 75-224 (235)
7 KOG1630|consensus 99.7 2.5E-16 5.4E-21 139.9 13.7 182 5-233 127-332 (336)
8 PF12811 BaxI_1: Bax inhibitor 99.4 4.3E-11 9.2E-16 108.3 21.9 131 106-236 115-274 (274)
9 COG4760 Predicted membrane pro 98.4 5.4E-05 1.2E-09 66.5 18.1 131 105-236 110-276 (276)
10 PF06123 CreD: Inner membrane 86.2 18 0.00039 35.3 13.0 74 131-207 351-425 (430)
11 PRK11715 inner membrane protei 75.6 61 0.0013 31.7 12.5 21 15-35 289-309 (436)
12 PF12273 RCR: Chitin synthesis 65.6 2.8 6E-05 33.7 0.8 26 29-54 2-27 (130)
13 KOG3488|consensus 39.7 1.6E+02 0.0034 22.0 7.2 50 184-233 7-77 (81)
14 PF10777 YlaC: Inner membrane 29.8 2.7E+02 0.0059 23.5 7.0 26 21-46 29-54 (155)
15 COG5006 rhtA Threonine/homoser 28.9 3.7E+02 0.0079 25.0 8.2 102 91-204 57-167 (292)
16 PF05957 DUF883: Bacterial pro 27.6 1.2E+02 0.0025 22.7 4.2 27 17-43 62-89 (94)
17 PRK10132 hypothetical protein; 27.3 1.2E+02 0.0026 23.9 4.4 28 18-45 76-104 (108)
18 COG4657 RnfA Predicted NADH:ub 24.1 4.3E+02 0.0093 22.9 7.3 23 51-73 92-114 (193)
19 PF15147 DUF4578: Domain of un 22.1 45 0.00097 26.9 1.0 13 74-86 3-15 (127)
No 1
>KOG2322|consensus
Probab=100.00 E-value=6.2e-37 Score=267.82 Aligned_cols=172 Identities=47% Similarity=0.951 Sum_probs=164.9
Q ss_pred CchHHHHHHHHHHHhchHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhhhhhhhhhcccccCCC
Q psy16008 1 MIQIGVSATFIGLFTLHQPTKLYVLQHPGMFWIAFIAMFVTLICITCCESVRRSSPMNVIFLGIFTLAECTFCNTLACSG 80 (236)
Q Consensus 1 ~~ql~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~c~~~~~r~~p~n~~~~~~~~~~~~~~~~~~~~~~ 80 (236)
++||++|+++++++++++++++|+++|+|.+|+++++.+++.+.+.||+..|||+|.|
T Consensus 56 ~~QLl~T~~~~~~~~~~~~~~~~v~~~~~~~~~~~~vf~vt~l~l~c~~~~r~k~P~N---------------------- 113 (237)
T KOG2322|consen 56 SIQLLITLAVVAIFTVHEPVQDFVRRNPALYWALIVVFIVTYLSLACCEGLRRKSPVN---------------------- 113 (237)
T ss_pred HHHHHHHHHheeEEEEccHHHHHHHhCcHHHHHHHHHHHHHHHHHHccCcccccCcHH----------------------
Confidence 4799999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCccccchhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Q psy16008 81 SRSSPCLSRSFVSRASVRRSSPMNVIFLGIFTLAESFLLGVISSRYNAEYVFYAAVITCVICLALTIFAFQTKIDFTMMG 160 (236)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p~n~ilL~lfTl~~G~~l~~i~~~~~~~iV~~Al~~Ta~if~~Ltl~a~~tk~Dft~~g 160 (236)
++++.+||+++++++|..+++|++++|++|+.+|+++++++++|++|+|+||+..|
T Consensus 114 ------------------------~ilL~iFT~a~s~~~g~~~a~~~~~~VL~Al~IT~~V~~slt~~t~qtK~DFt~~~ 169 (237)
T KOG2322|consen 114 ------------------------LILLGIFTLAEAFMTGLVTAFYDAKVVLLALIITTVVVLSLTLFTLQTKYDFTSLG 169 (237)
T ss_pred ------------------------HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhheeeEEEEEEeeccchhhhh
Confidence 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHHHhHhHHHH---------HHHHHHHH
Q psy16008 161 GILFVCVIVLMIFGIVM-IFFHGKVMTLIYASLGAILFSVYLIYDTQLMIG---------ASLNLYLD 218 (236)
Q Consensus 161 ~~L~~~l~~liv~~li~-iF~~~~~l~~i~s~lgvllFs~yliyDtQ~Ii~---------aAL~LYlD 218 (236)
+.++..+++++++|++. +|..+++++++|+.+|+++|++|++||||+++| +|+++|+|
T Consensus 170 ~~l~~~l~vl~~~g~I~~~f~~~~~~~~vya~lgAllf~~yl~~Dtqllm~~~SPEEYI~aA~~lYlD 237 (237)
T KOG2322|consen 170 GFLFALLIVLLLFGLIFLFFPYGPILVMVYAALGALLFCGYLVYDTQLLMGRISPEEYIFAALNLYLD 237 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHhhhHHHhccCCHHHHHHHHHHhhcC
Confidence 99999999999999554 455689999999999999999999999999997 99999998
No 2
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=253.03 Aligned_cols=139 Identities=25% Similarity=0.442 Sum_probs=133.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHhhc----CchHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q psy16008 98 RRSSPMNVIFLGIFTLAESFLLGVISSRY----NAEYVFYAAVITCVICLALTIFAFQTKIDFTMMGGILFVCVIVLMIF 173 (236)
Q Consensus 98 ~~~~p~n~ilL~lfTl~~G~~l~~i~~~~----~~~iV~~Al~~Ta~if~~Ltl~a~~tk~Dft~~g~~L~~~l~~liv~ 173 (236)
+||+|.|++++..||.++|+++|+++.+| +|++|.+|++.|+++|+++++||++||||++++|+++++++++++++
T Consensus 69 ~~~~~~~~~llf~fT~~~G~~lg~i~~~y~~~~~~~iV~~A~~~Ta~iF~~ls~~a~~tk~Dfs~lg~~L~~~l~~li~~ 148 (219)
T PRK10447 69 TANKPTGILSAFAFTGFLGYILGPILNTYLSAGMGDVIALALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIG 148 (219)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 46677779999999999999999999977 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHhHhHHHH--------HHHHHHHHHHHHHHHHHHHhhcccCC
Q psy16008 174 GIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIG--------ASLNLYLDVINIFLSILQILGAANSD 236 (236)
Q Consensus 174 ~li~iF~~~~~l~~i~s~lgvllFs~yliyDtQ~Ii~--------aAL~LYlDIInLFl~IL~Il~~~~~d 236 (236)
+++++|++++..+.+++++|+++|++|++||||+|++ ||++||+|++|+|+++||+++++|||
T Consensus 149 ~l~~~F~~s~~~~~~~s~~g~llfsgyilyDTq~Ii~~g~~dyi~aAl~LYlDiinlFl~lL~il~~~~~~ 219 (219)
T PRK10447 149 MVANIFLQLPALHLAISAVFILISSGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD 219 (219)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 9999999999999999999999999999999999996 99999999999999999999998887
No 3
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=100.00 E-value=1.9e-34 Score=248.83 Aligned_cols=185 Identities=42% Similarity=0.691 Sum_probs=171.3
Q ss_pred chHHHHHHHHHHHhchHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhhhhhhhhhcccccCCCC
Q psy16008 2 IQIGVSATFIGLFTLHQPTKLYVLQHPGMFWIAFIAMFVTLICITCCESVRRSSPMNVIFLGIFTLAECTFCNTLACSGS 81 (236)
Q Consensus 2 ~ql~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~c~~~~~r~~p~n~~~~~~~~~~~~~~~~~~~~~~~ 81 (236)
.|+++|++.+.....+++.++ +.+|+|..|++..+.++..+.+.|++..
T Consensus 15 ~~l~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~------------------------------ 63 (212)
T cd06181 15 LQLLVTALVAYLGMFSPPLRN-VLSNTPLGWLLLLAFLGLVILLFCCRIK------------------------------ 63 (212)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHh------------------------------
Confidence 699999999999999999888 6788899999888888888888875444
Q ss_pred CCCCccccchhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Q psy16008 82 RSSPCLSRSFVSRASVRRSSPMNVIFLGIFTLAESFLLGVISSRYNAEYVFYAAVITCVICLALTIFAFQTKIDFTMMGG 161 (236)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~p~n~ilL~lfTl~~G~~l~~i~~~~~~~iV~~Al~~Ta~if~~Ltl~a~~tk~Dft~~g~ 161 (236)
+||+|.|+.++..||+.+|+++++++..++++.+.+|+..|+++++++++++++||+|++++|+
T Consensus 64 ----------------~~~~~~~~~ll~~ft~~~g~~l~~~~~~~~~~~i~~A~~~T~~if~~l~l~a~~tk~d~~~~g~ 127 (212)
T cd06181 64 ----------------RRSSPANLILLFLFTALMGVTLGPILSVYTAASVLQAFGITAAVFGGLSLYALTTKRDFSFLGG 127 (212)
T ss_pred ----------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHhHHH
Confidence 4455666999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhHhHHHH-------------HHHHHHHHHHHHHHHHHH
Q psy16008 162 ILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIG-------------ASLNLYLDVINIFLSILQ 228 (236)
Q Consensus 162 ~L~~~l~~liv~~li~iF~~~~~l~~i~s~lgvllFs~yliyDtQ~Ii~-------------aAL~LYlDIInLFl~IL~ 228 (236)
++++++.++++.++.++|++++..+.+++++|+++|++|++||||++++ +|++||+|++|+|+++||
T Consensus 128 ~l~~~~~~l~~~~l~~~f~~~~~~~~~~~~~g~~lf~~~l~~Dtq~i~~~~~~~~~~~d~i~~al~LylDiinlF~~iL~ 207 (212)
T cd06181 128 FLFMGLIVLIVASLVNIFLQSPALQLAISALGVLLFSGYILYDTQLIIGGYRLYLSPDDYILAALSLYLDIINLFLSLLR 207 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999985 899999999999999999
Q ss_pred Hhhcc
Q psy16008 229 ILGAA 233 (236)
Q Consensus 229 Il~~~ 233 (236)
++|++
T Consensus 208 il~~~ 212 (212)
T cd06181 208 ILGSR 212 (212)
T ss_pred HhCCC
Confidence 99864
No 4
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=99.97 E-value=4e-30 Score=227.07 Aligned_cols=182 Identities=30% Similarity=0.431 Sum_probs=156.2
Q ss_pred chHHHHHHHHHHHhchHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhhhhhhhhhcccccCCCC
Q psy16008 2 IQIGVSATFIGLFTLHQPTKLYVLQHPGMFWIAFIAMFVTLICITCCESVRRSSPMNVIFLGIFTLAECTFCNTLACSGS 81 (236)
Q Consensus 2 ~ql~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~c~~~~~r~~p~n~~~~~~~~~~~~~~~~~~~~~~~ 81 (236)
.+++.|++..+...+.++..... ++++..++..++.+..++.+.
T Consensus 33 ~~L~~t~~~a~~~~~~~~~~~~~-~~~~~~~vl~~a~l~~~~~~~----------------------------------- 76 (233)
T COG0670 33 LGLLVTAVGAALAAYLLFNLGLL-SLSPPGFVLIIAGLAGVFFLS----------------------------------- 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHH-----------------------------------
Confidence 46677776666655544433312 667777777777777666554
Q ss_pred CCCCccccchhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcCchH----HHHHHHHHHHHHHHHHHHHHhccccch
Q psy16008 82 RSSPCLSRSFVSRASVRRSSPMNVIFLGIFTLAESFLLGVISSRYNAEY----VFYAAVITCVICLALTIFAFQTKIDFT 157 (236)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~p~n~ilL~lfTl~~G~~l~~i~~~~~~~i----V~~Al~~Ta~if~~Ltl~a~~tk~Dft 157 (236)
...+|++|.+...+..||..+|++++++...|.+.. +.+|++.|+++|.++++|+++||||++
T Consensus 77 -------------~~~~~s~~~~~~~~~~~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~g~~tk~Dls 143 (233)
T COG0670 77 -------------RKINKSSPTALILFFVYTALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGYTTKRDLS 143 (233)
T ss_pred -------------HHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 123346777899999999999999999999986555 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhHhHHHH----------HHHHHHHHHHHHHHHHH
Q psy16008 158 MMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIG----------ASLNLYLDVINIFLSIL 227 (236)
Q Consensus 158 ~~g~~L~~~l~~liv~~li~iF~~~~~l~~i~s~lgvllFs~yliyDtQ~Ii~----------aAL~LYlDIInLFl~IL 227 (236)
++|+.++++++++++++++|+|.+++.++.++|++|+++|+++++||||+|++ +|++||+|++|+|+++|
T Consensus 144 ~l~~~l~~aligLiiasvvn~Fl~s~~l~~~IS~lgvlifsgli~yDtq~I~~~~~~~~~~i~~AlsLYldfiNlF~~LL 223 (233)
T COG0670 144 SLGSFLFMALIGLIIASLVNIFLGSSALHLAISVLGVLIFSGLIAYDTQNIKRMEGGERLAIMGALSLYLDFINLFLSLL 223 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 99999999999999999
Q ss_pred HHhhc
Q psy16008 228 QILGA 232 (236)
Q Consensus 228 ~Il~~ 232 (236)
|+++.
T Consensus 224 ~i~g~ 228 (233)
T COG0670 224 RILGI 228 (233)
T ss_pred HHHhh
Confidence 99985
No 5
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=99.97 E-value=3.2e-29 Score=213.32 Aligned_cols=182 Identities=44% Similarity=0.695 Sum_probs=158.6
Q ss_pred chHHHHHHHHHHHhchHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhhhhhhhhhcccccCCCC
Q psy16008 2 IQIGVSATFIGLFTLHQPTKLYVLQHPGMFWIAFIAMFVTLICITCCESVRRSSPMNVIFLGIFTLAECTFCNTLACSGS 81 (236)
Q Consensus 2 ~ql~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~c~~~~~r~~p~n~~~~~~~~~~~~~~~~~~~~~~~ 81 (236)
.|+.+|++........| .+.++++|..|.+.++.++..+...|.++.+|+.|.
T Consensus 13 ~~l~it~~~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~------------------------ 65 (205)
T PF01027_consen 13 LQLAITALGAFLVLASP---LFLSQHFPLSWVSLIVSLVLLIFLYILFNRRRRFPS------------------------ 65 (205)
T ss_pred HHHHHHHHHHHHHHHhH---HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------------------------
Confidence 58889944444444444 777889999999998888887666654433333222
Q ss_pred CCCCccccchhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Q psy16008 82 RSSPCLSRSFVSRASVRRSSPMNVIFLGIFTLAESFLLGVISSRYNAEYVFYAAVITCVICLALTIFAFQTKIDFTMMGG 161 (236)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~p~n~ilL~lfTl~~G~~l~~i~~~~~~~iV~~Al~~Ta~if~~Ltl~a~~tk~Dft~~g~ 161 (236)
+.++..+..||..+|..++++..+++++.+.+|+..|++++++++++++++|+|++++++
T Consensus 66 --------------------~~~~~~~~~~t~~~g~~~~~i~~~~~~~~v~~a~~~T~~if~~l~~~a~~~~~d~~~~~~ 125 (205)
T PF01027_consen 66 --------------------NVALILLFIFTLLEGLLLGPISSFYDPSIVLQAFLLTAAIFIALTLYAFFTKRDFTRWGG 125 (205)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccch
Confidence 234999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhHhHHHH-----------HHHHHHHHHHHHHHHHHHHh
Q psy16008 162 ILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIG-----------ASLNLYLDVINIFLSILQIL 230 (236)
Q Consensus 162 ~L~~~l~~liv~~li~iF~~~~~l~~i~s~lgvllFs~yliyDtQ~Ii~-----------aAL~LYlDIInLFl~IL~Il 230 (236)
.+..++.++++++++++|++++..+.+++++|+++|++|++||||++++ +|++||+|++|+|+++||++
T Consensus 126 ~l~~~l~~l~i~~l~~~f~~~~~~~~~is~~~~~lf~~~l~~Dt~~i~~~~~~~~~~~i~~Al~Ly~d~i~lF~~iL~ll 205 (205)
T PF01027_consen 126 ILFIGLIGLIIFGLVSIFLPSSPLYLLISYIGILLFSLYLVYDTQRIIRRYFSPDDYAIIAALSLYLDIINLFLRILRLL 205 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999973 89999999999999999985
No 6
>KOG1629|consensus
Probab=99.78 E-value=4.4e-18 Score=146.06 Aligned_cols=135 Identities=22% Similarity=0.352 Sum_probs=124.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhh---cCchHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHHHH
Q psy16008 100 SSPMNVIFLGIFTLAESFLLGVISSR---YNAEYVFYAAVITCVICLALTIFAFQTK-IDFTMMGGILFVCVIVLMIFGI 175 (236)
Q Consensus 100 ~~p~n~ilL~lfTl~~G~~l~~i~~~---~~~~iV~~Al~~Ta~if~~Ltl~a~~tk-~Dft~~g~~L~~~l~~liv~~l 175 (236)
+|..++-++.+|+++.|..+||...+ .||.++..|+..|+++|.++++.|...+ |++.++|+.|..++..+...++
T Consensus 75 ~hk~rl~lL~~fa~l~GasvGP~i~~~ididpsIliTAf~GTav~F~cfSasAmlArrreYLylGg~L~s~~s~l~wl~l 154 (235)
T KOG1629|consen 75 EHKTRLGLLFLFAFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSASAMLARRREYLYLGGLLSSGLSLLLWLSL 154 (235)
T ss_pred ccchhHHHHHHHHHHcCCcccchhhheeccChHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34447899999999999999998876 4899999999999999999999998765 7999999999999999999999
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHhHhHHHH-----------HHHHHHHHHHHHHHHHHHHhhccc
Q psy16008 176 VMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIG-----------ASLNLYLDVINIFLSILQILGAAN 234 (236)
Q Consensus 176 i~iF~~~~~l~~i~s~lgvllFs~yliyDtQ~Ii~-----------aAL~LYlDIInLFl~IL~Il~~~~ 234 (236)
.+.|++|.+..-.-.++|+++|++|+++|||.|++ +|+.+|.|++.+|.++|.|+..++
T Consensus 155 ~n~~fgS~~v~~~qLY~Gllvfvg~ivvdTQ~IiEKah~GdmDyv~Hsl~lf~dfvsvF~riLiIl~~~~ 224 (235)
T KOG1629|consen 155 ANSFFGSIWVFKFQLYVGLLVFVGFIVVDTQEIIEKAHHGDMDYVQHSLDLFTDFVSVFRRILIILAMNE 224 (235)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhheeEEeeHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999998888899999999999999999999987 999999999999999999997543
No 7
>KOG1630|consensus
Probab=99.70 E-value=2.5e-16 Score=139.86 Aligned_cols=182 Identities=21% Similarity=0.240 Sum_probs=146.4
Q ss_pred HHHHHHHHHHhchHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhhhhhhhhhcccccCCCCCCC
Q psy16008 5 GVSATFIGLFTLHQPTKLYVLQHPGMFWIAFIAMFVTLICITCCESVRRSSPMNVIFLGIFTLAECTFCNTLACSGSRSS 84 (236)
Q Consensus 5 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~c~~~~~r~~p~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (236)
.+|+.-...+.-++.+.+++.+..|+-. ++.+..++ -+....|+-|
T Consensus 127 ~lTA~savA~~rs~~lm~l~~rgg~va~---~~tla~mi---~sG~larsi~---------------------------- 172 (336)
T KOG1630|consen 127 GLTAASAVAISRSPALMNLMMRGGWVAI---GVTLAAMI---GSGMLARSIE---------------------------- 172 (336)
T ss_pred HHHHHHHHHHhccHHHHHHHhcCchHHH---HHHHHHHH---hcchhhhccc----------------------------
Confidence 3454444444555667788888775543 44444443 2345555543
Q ss_pred CccccchhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccc-cchhhHHHH
Q psy16008 85 PCLSRSFVSRASVRRSSPMNVIFLGIFTLAESFLLGVISSRYNAEYVFYAAVITCVICLALTIFAFQTKI-DFTMMGGIL 163 (236)
Q Consensus 85 ~~~~~~~~~~~~~~~~~p~n~ilL~lfTl~~G~~l~~i~~~~~~~iV~~Al~~Ta~if~~Ltl~a~~tk~-Dft~~g~~L 163 (236)
+.+.+..+...|.+.....|-.++++|.. ...+...|...|++++.+++-.|...+. .|..+|+.|
T Consensus 173 ------------Yq~g~gaKhLAW~lHc~vlGAV~APlc~l-gGPiLtrAa~YTaGIVGgLStvA~cAPSeKFL~MggPL 239 (336)
T KOG1630|consen 173 ------------YQPGPGAKHLAWLLHCGVLGAVVAPLCFL-GGPILTRAAWYTAGIVGGLSTVAACAPSEKFLNMGGPL 239 (336)
T ss_pred ------------CCCCccHHHHHHHHHHHHHHHHHhhHHhc-ccHHHHHHHHHHccccchhhhhhhcCcHHHHhhcCCCc
Confidence 45667788999999999999999999987 4557788999999999999988888874 599999999
Q ss_pred HHHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHhHhHHHH------------------HHHHHHHHHH
Q psy16008 164 FVCVIVLMIFGIVMIFFHG-----KVMTLIYASLGAILFSVYLIYDTQLMIG------------------ASLNLYLDVI 220 (236)
Q Consensus 164 ~~~l~~liv~~li~iF~~~-----~~l~~i~s~lgvllFs~yliyDtQ~Ii~------------------aAL~LYlDII 220 (236)
.+++-++++.++.++|.|. ..+..+-.+.|.++||+|+.||||++.+ +++++|+|+.
T Consensus 240 aiGlGvVFvssl~sm~LPPtta~GA~LaSmslYGGLiLFS~FLLYDTQr~vk~ae~ypq~s~~~~~dPin~~msiymdvl 319 (336)
T KOG1630|consen 240 AIGLGVVFVSSLGSMFLPPTTALGAGLASMSLYGGLILFSGFLLYDTQRVVKSAEKYPQYSEFPNYDPINACMSIYMDVL 319 (336)
T ss_pred eeeeeeEehhhhhhhhcCCchhhhhhhHHHHHhccHHHHHHHHHHhHHHHHHHHHhCcchhccCCCCchHHHHHHHHHHH
Confidence 9999999999999999874 3566778889999999999999999985 9999999999
Q ss_pred HHHHHHHHHhhcc
Q psy16008 221 NIFLSILQILGAA 233 (236)
Q Consensus 221 nLFl~IL~Il~~~ 233 (236)
|+|+||..|++..
T Consensus 320 nifiriv~il~gg 332 (336)
T KOG1630|consen 320 NIFIRIVMILGGG 332 (336)
T ss_pred HHHHHHHhhhcCC
Confidence 9999999999863
No 8
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=99.43 E-value=4.3e-11 Score=108.26 Aligned_cols=131 Identities=18% Similarity=0.299 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-------chHHHHHHHHHHHHHHHHHH-HHHhccccchhhHHHHHHHHHHHHHHHHHH
Q psy16008 106 IFLGIFTLAESFLLGVISSRYN-------AEYVFYAAVITCVICLALTI-FAFQTKIDFTMMGGILFVCVIVLMIFGIVM 177 (236)
Q Consensus 106 ilL~lfTl~~G~~l~~i~~~~~-------~~iV~~Al~~Ta~if~~Ltl-~a~~tk~Dft~~g~~L~~~l~~liv~~li~ 177 (236)
.+-..|++.||+.+|.+...++ |+++.+|+..|.+++++|.. |....-|--.++.++...+..+..++.+++
T Consensus 115 ~l~~~YA~~EG~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~lYk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~ 194 (274)
T PF12811_consen 115 ALAPIYAVLEGVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLALYKTGIIRVTPKFRRIVMIATFGIALFYLVN 194 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHhCCeeechHHHHHHHHHHHHHHHHHHHH
Confidence 3345799999999999987654 88999999999999999864 333333666688888888888888877777
Q ss_pred Hhcc--------chHHHHHHHHHHHHHHHHHHHHhHhHHHH-------------HHHHHHHHHHHHHHHHHHHhhcccCC
Q psy16008 178 IFFH--------GKVMTLIYASLGAILFSVYLIYDTQLMIG-------------ASLNLYLDVINIFLSILQILGAANSD 236 (236)
Q Consensus 178 iF~~--------~~~l~~i~s~lgvllFs~yliyDtQ~Ii~-------------aAL~LYlDIInLFl~IL~Il~~~~~d 236 (236)
+... +.++.+.+|.+++.+-+..++.|.+.|.+ +|++|-..+||||+++||+++..++|
T Consensus 195 ~vl~lf~~~l~~~gplgI~~slv~v~iAa~sLllDFd~Ie~~v~~gaPk~~eW~~AfGL~vTLVWLYlEILRLL~~l~~~ 274 (274)
T PF12811_consen 195 LVLSLFVGSLRDGGPLGIGFSLVVVGIAALSLLLDFDFIEQGVRQGAPKKMEWYAAFGLLVTLVWLYLEILRLLSKLQND 274 (274)
T ss_pred HHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5321 36788999999999999999999999975 99999999999999999999987766
No 9
>COG4760 Predicted membrane protein [Function unknown]
Probab=98.38 E-value=5.4e-05 Score=66.49 Aligned_cols=131 Identities=24% Similarity=0.365 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh------cC---chHHHHHHHHHHHHHHHHHHHHHhcc--c---cchhhHHHHHHHHHHH
Q psy16008 105 VIFLGIFTLAESFLLGVISSR------YN---AEYVFYAAVITCVICLALTIFAFQTK--I---DFTMMGGILFVCVIVL 170 (236)
Q Consensus 105 ~ilL~lfTl~~G~~l~~i~~~------~~---~~iV~~Al~~Ta~if~~Ltl~a~~tk--~---Dft~~g~~L~~~l~~l 170 (236)
.+.-..|++.||+.+|.+... ++ ...+.+|...|.++|.+|.. .++|. | +|+++---...+..++
T Consensus 110 pai~l~YAv~EGlFlGaiS~lla~ftV~~anaGgligqAvLgT~Gvf~gML~-vYktGaIkvTpkF~r~v~a~~~Gvl~L 188 (276)
T COG4760 110 PAIVLSYAVLEGLFLGAISFLLANFTVYEANAGGLIGQAVLGTFGVFFGMLV-VYKTGAIKVTPKFTRMVVAATFGVLVL 188 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccceEEeccccceeHHHHHHHHHHHHHHHH-HHhcCceeecchhHHHHHHHHHHHHHH
Confidence 344567999999999998843 22 46788999999999999864 55553 3 3444333333333333
Q ss_pred HHHHHHH-Hhcc--ch------HHHHHHHHH--HHHHHHHHHHHhH-hHHHH----------HHHHHHHHHHHHHHHHHH
Q psy16008 171 MIFGIVM-IFFH--GK------VMTLIYASL--GAILFSVYLIYDT-QLMIG----------ASLNLYLDVINIFLSILQ 228 (236)
Q Consensus 171 iv~~li~-iF~~--~~------~l~~i~s~l--gvllFs~yliyDt-Q~Ii~----------aAL~LYlDIInLFl~IL~ 228 (236)
++-.++. +|.+ ++ .+.+++|.. |+.-|++.+=+|. +++++ .|+.|-...+|+|+++||
T Consensus 189 ~Lgn~vla~F~Gg~~pllr~gG~~~IiFSLfcigiAAf~fllDFDaad~~vr~GAP~kmaWgvAlGL~VTLVWLY~EiLR 268 (276)
T COG4760 189 MLGNFVLAMFVGGGIPLLRSGGPFGIIFSLFCIGIAAFSFLLDFDAADQMVRAGAPEKMAWGVALGLTVTLVWLYLEILR 268 (276)
T ss_pred HHHHHHHHHHhcCCcccccCCCceEeeHHHHHHHHHHHHHHhhhhHHHHHHHcCChhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 3333332 3422 22 344566654 4555555555555 23332 899999999999999999
Q ss_pred HhhcccCC
Q psy16008 229 ILGAANSD 236 (236)
Q Consensus 229 Il~~~~~d 236 (236)
+++.-++|
T Consensus 269 LLSy~Qnr 276 (276)
T COG4760 269 LLSYLQNR 276 (276)
T ss_pred HHHHhhcC
Confidence 99975443
No 10
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=86.24 E-value=18 Score=35.26 Aligned_cols=74 Identities=15% Similarity=0.328 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhccccchhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhHhH
Q psy16008 131 VFYAAVITCVICLAL-TIFAFQTKIDFTMMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQL 207 (236)
Q Consensus 131 V~~Al~~Ta~if~~L-tl~a~~tk~Dft~~g~~L~~~l~~liv~~li~iF~~~~~l~~i~s~lgvllFs~yliyDtQ~ 207 (236)
-..|..+.++.+.++ +.|+... +..+...+.++.....+.+++....+++=..++.+.+++++--.-+.|=|++
T Consensus 351 F~~AYliAa~a~i~Li~~Y~~~v---l~~~k~~~~~~~~L~~LY~~Ly~lLq~EdyALL~GSl~LF~iLa~vM~~TRk 425 (430)
T PF06123_consen 351 FNLAYLIAALACIGLISLYLSSV---LKSWKRGLIFAGLLAALYGFLYVLLQSEDYALLMGSLLLFIILALVMYLTRK 425 (430)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHheeec
Confidence 345555555555444 4554432 2223333344444445555555555555445556656655555555554443
No 11
>PRK11715 inner membrane protein; Provisional
Probab=75.58 E-value=61 Score=31.70 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=14.3
Q ss_pred hchHHHHHHHhhchHHHHHHH
Q psy16008 15 TLHQPTKLYVLQHPGMFWIAF 35 (236)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ 35 (236)
-+.+|+..|.+.+...-+..+
T Consensus 289 ~~~~PVd~Y~~~~RA~KYgiL 309 (436)
T PRK11715 289 SLIDPVDQYQKTERAVKYAIL 309 (436)
T ss_pred EEeccccHHHHHHHHHhHHHH
Confidence 356888888887766655433
No 12
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=65.64 E-value=2.8 Score=33.67 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccC
Q psy16008 29 GMFWIAFIAMFVTLICITCCESVRRS 54 (236)
Q Consensus 29 ~~~~~~~~~~~~~~i~l~c~~~~~r~ 54 (236)
|.+|+.+++.+++++++.|+.+.||+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRR 27 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777766666655554443
No 13
>KOG3488|consensus
Probab=39.72 E-value=1.6e+02 Score=21.96 Aligned_cols=50 Identities=24% Similarity=0.424 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------hHhHHHH--------------HHHHHHHHHHHHHHHHHHHhhcc
Q psy16008 184 VMTLIYASLGAILFSVYLIY-------DTQLMIG--------------ASLNLYLDVINIFLSILQILGAA 233 (236)
Q Consensus 184 ~l~~i~s~lgvllFs~yliy-------DtQ~Ii~--------------aAL~LYlDIInLFl~IL~Il~~~ 233 (236)
...+...+++..+|..|.+| |.|.+++ +|...-+-.|..|+..+.+=+++
T Consensus 7 ~vgl~lv~iSl~iFtYYT~WViilPFvDs~hiihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vMlKskk 77 (81)
T KOG3488|consen 7 VVGLMLVYISLAIFTYYTIWVIILPFVDSMHIIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVMLKSKK 77 (81)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34455666777788777764 8888875 77777788999999998876653
No 14
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=29.76 E-value=2.7e+02 Score=23.52 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=16.2
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHH
Q psy16008 21 KLYVLQHPGMFWIAFIAMFVTLICIT 46 (236)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~i~l~ 46 (236)
.+|+++|||++..-.+..+.+.+.+.
T Consensus 29 ~~Fi~~HP~L~~~M~~~y~~~~~lm~ 54 (155)
T PF10777_consen 29 SSFIRNHPYLCLAMYAAYLAVAALMY 54 (155)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 36889999998544444444444443
No 15
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=28.91 E-value=3.7e+02 Score=24.96 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=61.9
Q ss_pred hhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHhhc-CchHH--HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Q psy16008 91 FVSRASVRRSSPMNVIFLGIFTLAESFLLGVISSRY-NAEYV--FYAAVITCVICLALTIFAFQTKIDFTMMGGILFVCV 167 (236)
Q Consensus 91 ~~~~~~~~~~~p~n~ilL~lfTl~~G~~l~~i~~~~-~~~iV--~~Al~~Ta~if~~Ltl~a~~tk~Dft~~g~~L~~~l 167 (236)
.+-||+++|-++.....+..|..+.|-+= +.+| .-+.+ -.|..+-+.-=..+.....++++||--
T Consensus 57 ~l~RPwr~r~~~~~~~~~~~yGvsLg~MN---l~FY~si~riPlGiAVAiEF~GPL~vA~~~sRr~~d~vw--------- 124 (292)
T COG5006 57 ALFRPWRRRLSKPQRLALLAYGVSLGGMN---LLFYLSIERIPLGIAVAIEFTGPLAVALLSSRRLRDFVW--------- 124 (292)
T ss_pred HHhhHHHhccChhhhHHHHHHHHHHHHHH---HHHHHHHHhccchhhhhhhhccHHHHHHHhccchhhHHH---------
Confidence 35689999999999998988888777542 2223 22222 234444444444555666677788631
Q ss_pred HHHHHHHHHHHh------ccchHHHHHHHHHHHHHHHHHHHHh
Q psy16008 168 IVLMIFGIVMIF------FHGKVMTLIYASLGAILFSVYLIYD 204 (236)
Q Consensus 168 ~~liv~~li~iF------~~~~~l~~i~s~lgvllFs~yliyD 204 (236)
.++.+.|+..+. .+.+.....+....-..+..|++.-
T Consensus 125 vaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G 167 (292)
T COG5006 125 VALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLG 167 (292)
T ss_pred HHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence 223333433221 1235677788888888899998764
No 16
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=27.59 E-value=1.2e+02 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.041 Sum_probs=18.1
Q ss_pred hHHHHHHHhhchHHHHH-HHHHHHHHHH
Q psy16008 17 HQPTKLYVLQHPGMFWI-AFIAMFVTLI 43 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~i 43 (236)
.+.+.+|+++|||-... +.++.+++-.
T Consensus 62 ~~~~~~~V~e~P~~svgiAagvG~llG~ 89 (94)
T PF05957_consen 62 AEQTEDYVRENPWQSVGIAAGVGFLLGL 89 (94)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 35688999999998653 5554444433
No 17
>PRK10132 hypothetical protein; Provisional
Probab=27.33 E-value=1.2e+02 Score=23.93 Aligned_cols=28 Identities=11% Similarity=-0.121 Sum_probs=17.7
Q ss_pred HHHHHHHhhchHHHHH-HHHHHHHHHHHH
Q psy16008 18 QPTKLYVLQHPGMFWI-AFIAMFVTLICI 45 (236)
Q Consensus 18 ~~~~~~~~~~~~~~~~-~~~~~~~~~i~l 45 (236)
...++|+.+|||-..+ +.++.+++-..+
T Consensus 76 ~~~~~~V~~~Pw~svgiaagvG~llG~Ll 104 (108)
T PRK10132 76 GCADTFVRERPWCSVGTAAAVGIFIGALL 104 (108)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 3467799999998664 444444444433
No 18
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=24.09 E-value=4.3e+02 Score=22.88 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=17.4
Q ss_pred cccCCCchhhhhhhhhhhhhhhc
Q psy16008 51 VRRSSPMNVIFLGIFTLAECTFC 73 (236)
Q Consensus 51 ~~r~~p~n~~~~~~~~~~~~~~~ 73 (236)
.||.+|.-|=.+|+|.-+-=|.|
T Consensus 92 v~KtsP~LYr~LGIfLPLITTNC 114 (193)
T COG4657 92 VRKTSPTLYRLLGIFLPLITTNC 114 (193)
T ss_pred HHccCHHHHHHHHHhhhhHhhch
Confidence 58888988888888877765544
No 19
>PF15147 DUF4578: Domain of unknown function (DUF4578)
Probab=22.06 E-value=45 Score=26.95 Aligned_cols=13 Identities=54% Similarity=0.953 Sum_probs=11.4
Q ss_pred ccccCCCCCCCCc
Q psy16008 74 NTLACSGSRSSPC 86 (236)
Q Consensus 74 ~~~~~~~~~~~~~ 86 (236)
|+.||-||.+-|-
T Consensus 3 NrlCCggSWScPs 15 (127)
T PF15147_consen 3 NRLCCGGSWSCPS 15 (127)
T ss_pred CccccCCCcCCch
Confidence 8999999998775
Done!