Query psy16008
Match_columns 236
No_of_seqs 183 out of 1315
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 18:36:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hvw_A Omega-ACTX-HV1A, omega- 26.7 22 0.00075 20.4 0.9 13 69-82 7-19 (26)
2 1pfi_A Major coat protein of P 12.1 1.7E+02 0.0058 18.6 2.6 26 152-177 15-40 (46)
3 1g1p_A Conotoxin EVIA; three d 12.0 78 0.0027 18.6 1.0 14 74-87 17-30 (33)
4 1axh_A Atracotoxin-HVI, ACTX-H 11.5 75 0.0026 19.5 0.8 9 74-82 14-22 (37)
5 1wii_A Hypothetical UPF0222 pr 10.5 64 0.0022 23.4 0.3 10 67-76 23-32 (85)
6 2k9p_A Pheromone alpha factor 9.6 5E+02 0.017 18.3 4.9 39 18-57 9-50 (80)
7 2lur_A Kalata; beta hairpin, p 9.1 90 0.0031 17.9 0.5 9 72-80 9-17 (29)
8 3ga3_A Interferon-induced heli 5.5 98 0.0033 24.3 -0.8 16 67-82 12-27 (133)
9 3arc_X Photosystem II PSBX pro 5.5 6.1E+02 0.021 15.7 4.4 12 16-27 2-13 (39)
10 2qfd_A Probable ATP-dependent 5.4 1E+02 0.0034 24.6 -0.8 16 67-82 27-42 (145)
No 1
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=26.67 E-value=22 Score=20.38 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=9.5
Q ss_pred hhhhcccccCCCCC
Q psy16008 69 ECTFCNTLACSGSR 82 (236)
Q Consensus 69 ~~~~~~~~~~~~~~ 82 (236)
-|+. |.-||+||-
T Consensus 7 ~Cp~-~e~CCSGsC 19 (26)
T 1hvw_A 7 PCPY-NENCCSQSC 19 (26)
T ss_dssp BCSS-TTSBSSCCE
T ss_pred cCCC-Ccccccccc
Confidence 3555 788999984
No 2
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=12.07 E-value=1.7e+02 Score=18.63 Aligned_cols=26 Identities=19% Similarity=0.528 Sum_probs=21.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHH
Q psy16008 152 TKIDFTMMGGILFVCVIVLMIFGIVM 177 (236)
Q Consensus 152 tk~Dft~~g~~L~~~l~~liv~~li~ 177 (236)
.|.|.+..++++..++..+.++|++.
T Consensus 15 G~~Dm~si~~~IVGaLvil~VAGLiy 40 (46)
T 1pfi_A 15 GQGDMKAIGGYIVGALVILAVAGLIY 40 (46)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999888888888864
No 3
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=12.02 E-value=78 Score=18.60 Aligned_cols=14 Identities=43% Similarity=0.816 Sum_probs=10.9
Q ss_pred ccccCCCCCCCCcc
Q psy16008 74 NTLACSGSRSSPCL 87 (236)
Q Consensus 74 ~~~~~~~~~~~~~~ 87 (236)
|..||+|.-|.-|.
T Consensus 17 nglccsgacvgvca 30 (33)
T 1g1p_A 17 NGLCCSGACVGVCA 30 (33)
T ss_dssp CCCBTTBCBSSBBC
T ss_pred CCcccCCceeEEee
Confidence 77899998877663
No 4
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=11.46 E-value=75 Score=19.52 Aligned_cols=9 Identities=44% Similarity=0.516 Sum_probs=6.4
Q ss_pred ccccCCCCC
Q psy16008 74 NTLACSGSR 82 (236)
Q Consensus 74 ~~~~~~~~~ 82 (236)
|+-||+||-
T Consensus 14 ne~CCs~sc 22 (37)
T 1axh_A 14 NENCCSQSC 22 (37)
T ss_dssp GGGBSSSCE
T ss_pred ccccccccc
Confidence 467898873
No 5
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=10.50 E-value=64 Score=23.41 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=8.8
Q ss_pred hhhhhhcccc
Q psy16008 67 LAECTFCNTL 76 (236)
Q Consensus 67 ~~~~~~~~~~ 76 (236)
.-.|.||||.
T Consensus 23 ~F~CPfCnh~ 32 (85)
T 1wii_A 23 QFTCPFCNHE 32 (85)
T ss_dssp CCCCTTTCCS
T ss_pred eEcCCCCCCC
Confidence 4789999998
No 6
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=9.63 E-value=5e+02 Score=18.32 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=17.9
Q ss_pred HHHHHHHhhc--hHHHH-HHHHHHHHHHHHHHhccccccCCCc
Q psy16008 18 QPTKLYVLQH--PGMFW-IAFIAMFVTLICITCCESVRRSSPM 57 (236)
Q Consensus 18 ~~~~~~~~~~--~~~~~-~~~~~~~~~~i~l~c~~~~~r~~p~ 57 (236)
+++++|++++ ..+.+ ...+++.++.+.+.-..+ +||+|.
T Consensus 9 ~~ld~~~~~~~~~~I~~G~~iGAs~llliil~lltk-krrspi 50 (80)
T 2k9p_A 9 DELQGLVNSTVTQAILFGVRSGAAALTLIVVWITSR-SRKTPI 50 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccChh
Confidence 4566666554 22222 234444444444332233 566674
No 7
>2lur_A Kalata; beta hairpin, plant protein; NMR {Synthetic}
Probab=9.11 E-value=90 Score=17.92 Aligned_cols=9 Identities=44% Similarity=0.918 Sum_probs=6.9
Q ss_pred hcccccCCC
Q psy16008 72 FCNTLACSG 80 (236)
Q Consensus 72 ~~~~~~~~~ 80 (236)
.||||-|.-
T Consensus 9 ~cntpgc~c 17 (29)
T 2lur_A 9 TCNTPGCTC 17 (29)
T ss_dssp CCCBTTBEE
T ss_pred ccCCCCcEe
Confidence 599998843
No 8
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=5.51 E-value=98 Score=24.33 Aligned_cols=16 Identities=44% Similarity=0.856 Sum_probs=13.7
Q ss_pred hhhhhhcccccCCCCC
Q psy16008 67 LAECTFCNTLACSGSR 82 (236)
Q Consensus 67 ~~~~~~~~~~~~~~~~ 82 (236)
-+.|..|+..+|.||=
T Consensus 12 kllCrkC~~~~C~g~D 27 (133)
T 3ga3_A 12 TFLCKNCSVLACSGED 27 (133)
T ss_dssp EEEETTTCCEEEEGGG
T ss_pred EEEccCCCeeEEeccc
Confidence 4679999999998874
No 9
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=5.51 E-value=6.1e+02 Score=15.66 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=8.7
Q ss_pred chHHHHHHHhhc
Q psy16008 16 LHQPTKLYVLQH 27 (236)
Q Consensus 16 ~~~~~~~~~~~~ 27 (236)
..|.+++|+..-
T Consensus 2 mTpSL~nFl~Sl 13 (39)
T 3arc_X 2 ITPSLKGFFIGL 13 (39)
T ss_dssp CCHHHHHHHHHH
T ss_pred cChhHHHHHHHH
Confidence 467889998653
No 10
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=5.43 E-value=1e+02 Score=24.62 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=13.6
Q ss_pred hhhhhhcccccCCCCC
Q psy16008 67 LAECTFCNTLACSGSR 82 (236)
Q Consensus 67 ~~~~~~~~~~~~~~~~ 82 (236)
-+.|..|+..+|.|+=
T Consensus 27 ~llCrkC~~~~C~g~D 42 (145)
T 2qfd_A 27 KLLCRKCKALACYTAD 42 (145)
T ss_dssp EEEETTTCCEEEEGGG
T ss_pred EEEccCCCeeEEcccc
Confidence 3679999999998873
Done!