RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16008
(236 letters)
>gnl|CDD|198410 cd10428, LFG_like, Proteins similar to and including lifeguard
(LFG), a putative regulator of apoptosis. Lifeguard
(LFG) inhibits Fas-mediated apoptosis and interacts with
the death receptor FasR/CD95/Apo1. LFG has been shown to
interact with Bax and is supposed to be integral to
cellular membranes such as the ER. A close homolog,
PP1201 or RECS1, appears located in the Golgi
compartment and also interacts with the Fas receptor
CD95/Apo1. PP1201 is expressed in response to shear
stress.
Length = 217
Score = 181 bits (463), Expect = 1e-57
Identities = 101/244 (41%), Positives = 140/244 (57%), Gaps = 59/244 (24%)
Query: 1 MIQIGVSATFIGLFTLHQPTKLYVLQHPGMFWIAFIAMFVTLICITCCESVRRSSPMNVI 60
IQ+ V+ I LFT H P K +V ++P ++++++I F+T I + CCE +RR P N+I
Sbjct: 20 TIQLLVTVAVIALFTFHDPVKKFVRKNPWLYYVSYIVFFITYIALACCEGLRRRFPWNLI 79
Query: 61 FLGIFTLAECTFCNTLACSGSRSSPCLSRSFVSRASVRRSSPMNVIFLGIFTLAESFLLG 120
LGIFTLA S++LG
Sbjct: 80 LLGIFTLAM----------------------------------------------SYMLG 93
Query: 121 VISSRYNAEYVFYAAVITCVICLALTIFAFQTKIDFTMMGGILFVCVIVLMIFGIVMIFF 180
I+S Y+ + V A IT V+CL LT+FAFQTK DFT GG+LFV IVL+IFGIV IFF
Sbjct: 94 TIASFYDTKAVLIAVGITAVVCLGLTLFAFQTKYDFTSCGGVLFVLSIVLLIFGIVAIFF 153
Query: 181 HGKVMTLIYASLGAILFSVYLIYDTQLMIG-------------ASLNLYLDVINIFLSIL 227
+ K + ++YASLGA+LFS+YL DTQL++G A+LN+Y+D++NIFL IL
Sbjct: 154 YVKWLHIVYASLGALLFSLYLAVDTQLLMGGRKYELSPEEYIFAALNIYVDIVNIFLYIL 213
Query: 228 QILG 231
Q++G
Sbjct: 214 QLIG 217
>gnl|CDD|198411 cd10429, GAAP_like, Golgi antiapoptotic protein. GAAP (or
transmembrane BAX inhibitor motif containing 4) is a
regulator of apoptosis that is related to the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. Human GAAP has been linked
to the modulation of intracellular fluxes of Ca(2+), by
suppressing influx from the extracellular medium and
reducing release from intracellular stores. A viral
homolog (vaccinia virus vGAAP) acts similar to its human
counterpart in inhibiting apoptosis.
Length = 233
Score = 130 bits (329), Expect = 2e-37
Identities = 62/147 (42%), Positives = 97/147 (65%), Gaps = 10/147 (6%)
Query: 98 RRSSPMNVIFLGIFTLAESFLLGVISSRYNAEYVFYAAVITCVICLALTIFAFQTKIDFT 157
R S P+N+I L +FTL E++ +G++ S Y+ + V A ++T + + LT + FQTK DF+
Sbjct: 87 RHSHPVNLILLSLFTLCEAYTVGLVVSFYDGKIVLQALILTLGVFVGLTAYTFQTKRDFS 146
Query: 158 MMGGILFVCVIVLMIFGIVMIFF-HGKVMTLIYASLGAILFSVYLIYDTQLM-------- 208
G +LF+ + L++ ++ FF + L+YA LGA+LFS Y++YDTQL+
Sbjct: 147 SFGALLFILLWALILLALIFQFFPYSPTFELVYAGLGALLFSGYIVYDTQLIMKRLSPDE 206
Query: 209 -IGASLNLYLDVINIFLSILQILGAAN 234
I A+++LYLD+IN+FLSIL+IL A N
Sbjct: 207 YILAAISLYLDIINLFLSILRILAAMN 233
>gnl|CDD|198414 cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor
(BI)-1/YccA-like proteins. This family is comprised of
bacterial relatives of the mammalian members of the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. In plants, BI-1 like
proteins play a role in pathogen resistance. A
characterized prokaryotic member, Escherichia coli YccA,
has been shown to interact with ATP-dependent protease
FtsH, which degrades abnormal membrane proteins as part
of a quality control mechanism to keep the integrity of
biological membranes.
Length = 211
Score = 93.0 bits (232), Expect = 3e-23
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
Query: 98 RRSSPMNVIFLGIFTLAESFLLGVISSRYNAEYVFYAAVITCVICLALTIFAFQTKIDFT 157
+ S + F L I Y + A T L+++ + TK D +
Sbjct: 62 KMSVATALPLFFAFAALTGLTLSPILLVYTGASIAQAFFTTAATFGGLSLYGYTTKKDLS 121
Query: 158 MMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQ----------- 206
+G LF+ +I L+I +V IF + +++G ++FS + YDTQ
Sbjct: 122 FLGSFLFMGLIGLIIASLVNIFLQSSALQFAISAIGVLIFSGLIAYDTQRIKRMYEAGGG 181
Query: 207 -----LMIGASLNLYLDVINIFLSILQILG 231
I +L+LYLD IN+FL +L++ G
Sbjct: 182 ESGYKDAIMGALSLYLDFINLFLFLLRLFG 211
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 91.1 bits (227), Expect = 1e-22
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 11/152 (7%)
Query: 90 SFVSRASVRRSSPMNVIFLGIFTLAESFLLGVISSRY-NAEYVFYAAVITCVICLALTIF 148
+ ++SS + L +FTL E LG I Y + A + T I L+++
Sbjct: 54 FLLFSRIKKKSSSAALALLFLFTLLEGLTLGPILLVYTAGSIILQAFLGTAAIFGGLSLY 113
Query: 149 AFQTKIDFTMMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLM 208
A TK D + +GG LF +I L++ +V IF ++L +++G ++FS ++YDTQ +
Sbjct: 114 ALTTKRDLSFLGGFLFAGLIGLIVASLVNIFLPSSALSLAISAIGVLIFSGLILYDTQRI 173
Query: 209 ----------IGASLNLYLDVINIFLSILQIL 230
I A+L+LYLD IN+FL +L+IL
Sbjct: 174 KEGGETDDYYILAALSLYLDFINLFLYLLRIL 205
>gnl|CDD|198409 cd06181, BI-1-like, BAX inhibitor (BI)-1/YccA-like protein family.
Mammalian members of the BAX inhibitor (BI)-1 like
family of small transmembrane proteins have been shown
to have an antiapoptotic effect either by stimulating
the antiapoptotic function of Bcl-2, a
well-characterized oncogene, or by inhibiting the
proapoptotic effect of Bax, another member of the Bcl-2
family. Their broad tissue distribution and high degree
of conservation suggests an important regulatory role.
This superfamily also contains the lifeguard(LFG)-like
proteins and other subfamilies which appear to be
related by common descent and also function as
inhibitors of apoptosis. In plants, BI-1 like proteins
play a role in pathogen resistance. A prokaryotic
member, Escherichia coli YccA, has been shown to
interact with ATP-dependent protease FtsH, which
degrades abnormal membrane proteins as part of a quality
control mechanism to keep the integrity of biological
membranes.
Length = 202
Score = 88.6 bits (220), Expect = 1e-21
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 11/148 (7%)
Query: 95 ASVRRSSPMNVIFLGIFTLAESFLLGVISSRYNAEYVFYAAVITCVICLALTIFAFQTKI 154
A +R P+N+I L FT +++G + Y + A T ++ LT++A Q +
Sbjct: 55 AMIRAKMPVNLILLFGFTGLMGYVVGPLLFFYGPTILLRALGGTALVFFGLTVYALQARK 114
Query: 155 DFTMMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIG---- 210
DF +GG L + L++ ++ FF+ + L+ A++G +LF +L+YDTQL+I
Sbjct: 115 DFLFLGGPLMAGLGFLLLSFLLNTFFYSPWLHLVAAAVGLVLFCGFLLYDTQLIIHKAEV 174
Query: 211 -------ASLNLYLDVINIFLSILQILG 231
A ++LYLD+INIF+ +L IL
Sbjct: 175 GPEDYINACISLYLDIINIFIRLLTILA 202
>gnl|CDD|223742 COG0670, COG0670, Integral membrane protein, interacts with FtsH
[General function prediction only].
Length = 233
Score = 82.0 bits (203), Expect = 6e-19
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 14/161 (8%)
Query: 90 SFVSRASVRRSSPMNVIFLGIFTLAESFLLGVISSRY----NAEYVFYAAVITCVICLAL 145
F + +SSP +I ++T L I Y + + A IT ++ AL
Sbjct: 72 VFFLSRKINKSSPTALILFFVYTALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGAL 131
Query: 146 TIFAFQTKIDFTMMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDT 205
+++ + TK D + +G LF+ +I L+I +V IF + L + LG ++FS + YDT
Sbjct: 132 SLYGYTTKRDLSSLGSFLFMALIGLIIASLVNIFLGSSALHLAISVLGVLIFSGLIAYDT 191
Query: 206 Q----------LMIGASLNLYLDVINIFLSILQILGAANSD 236
Q L I +L+LYLD IN+FLS+L+ILG ++
Sbjct: 192 QNIKRMEGGERLAIMGALSLYLDFINLFLSLLRILGILSNR 232
>gnl|CDD|198415 cd10433, YccA_like, YccA-like proteins. A prokaryotic member of
the BAX inhibitor (BI)-1 like family of small
transmembrane proteins, Escherichia coli YccA, has been
shown to interact with ATP-dependent protease FtsH,
which degrades abnormal membrane proteins as part of a
quality control mechanism to keep the integrity of
biological membranes.
Length = 205
Score = 68.8 bits (169), Expect = 3e-14
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Query: 99 RSSPMNVIFLGIFTLAESFLLGVISSRY-----NAEYVFYAAVITCVICLALTIFAFQTK 153
R+S ++ + FT + LG I + Y + + A T I L+ +A TK
Sbjct: 56 RNSAWGIVLVFAFTGFMGYTLGPILNMYLALPNGGQIIMTALGGTAAIFFGLSAYALTTK 115
Query: 154 IDFTMMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIG--- 210
DF+ +GG LFV IVL++ + IF ++L ++ + S +++YDT +I
Sbjct: 116 KDFSFLGGFLFVGAIVLLLAAVANIFLQIPALSLAISAAFVLFSSGFILYDTSRIIHGGE 175
Query: 211 -----ASLNLYLDVINIFLSILQILGAANS 235
A+++LY+ + N+F+S+L +LGA +
Sbjct: 176 TNYIMATVSLYVSIYNLFVSLLNLLGAFSG 205
>gnl|CDD|198412 cd10430, BI-1, BAX inhibitor (BI)-1. Mammalian members of the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins have been shown to have an antiapoptotic effect
either by stimulating the antiapoptotic function of
Bcl-2, a well-characterized oncogene, or by inhibiting
the proapoptotic effect of Bax, another member of the
Bcl-2 family. Their broad tissue distribution and high
degree of conservation suggests an important regulatory
role. In plants, BI-1 like proteins play a role in
pathogen resistance.
Length = 213
Score = 50.3 bits (121), Expect = 1e-07
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 127 NAEYVFYAAVITCVICLALTIFAFQTKI-DFTMMGGILFVCVIVLMIFGIVMIFFHGKVM 185
N + A + T VI ++ A K ++ +GG+L + +L++ + IF K +
Sbjct: 93 NPSIIVTAFLGTAVIFACFSLAALLAKRREYLYLGGLLSSALSILLLVSLANIFGGSKFL 152
Query: 186 TLIYASLGAILFSVYLIYDTQLM-----------IGASLNLYLDVINIFLSILQIL 230
LG ++F ++++DTQ++ I +L+L++D + +F +L IL
Sbjct: 153 FQAELYLGLLVFCGFVLFDTQMIIEKAENGDRDYIWHALDLFVDFVALFRRLLIIL 208
>gnl|CDD|198413 cd10431, GHITM, Growth-hormone inducible transmembrane protein.
GHITM appears to be ubiquitiously expressed in mammalian
cells and expression has also been observed in various
cancer cell lines. A cytoprotective function has been
suggested. It is closely related to the BAX inhibitor
(BI)-1 like family of small transmembrane proteins,
which have been shown to have an antiapoptotic effect.
Length = 264
Score = 43.1 bits (102), Expect = 5e-05
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 156 FTMMGGILFVCVIVLMIFGIVMIFFH-----GKVMTLIYASLGAILFSVYLIYDTQLM-- 208
F MGG L + + V+ + +F G + + G +LF +L+YDTQ +
Sbjct: 161 FLYMGGPLAIGLGVVFASSLGSMFLPPTTALGAGLYSVSLYGGLVLFGGFLLYDTQKIIK 220
Query: 209 ---------------IGASLNLYLDVINIFLSILQILGAANS 235
I AS+++Y+D INIF+ ++ IL +
Sbjct: 221 RAETHPLYGVRKYDPINASMSIYMDTINIFIRLVTILAGGGN 262
>gnl|CDD|182469 PRK10447, PRK10447, HflBKC-binding inner membrane protein;
Provisional.
Length = 219
Score = 36.7 bits (85), Expect = 0.005
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 138 TCVICLALTIFAFQTKIDFTMMGGILFVCVIVLMIFGIVMIFFHGKVMTL------IYAS 191
T ++ + + T+ D + +GG+L ++V++I + IF + L I S
Sbjct: 113 TALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILIS 172
Query: 192 LGAILFSVYLIYD--TQLMIGASLNLYLDVINIFLSILQILGAANSD 236
GAILF I I A+++LY+ + NIF+S+L ILG A+ D
Sbjct: 173 SGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD 219
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 33.9 bits (78), Expect = 0.069
Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 10/139 (7%)
Query: 99 RSSPMNV-IFLGIFTLAESFLLGVISSRYNAEYV--FYAAVITCVICLALTIFAFQTKID 155
S+ + + + +G+ L+ LLG I+ + + ++ +I L L + K
Sbjct: 455 FSNILILSLLIGVLHLSLGLLLGFINRVRSGDIKGAILPQLLWLLIILGLLLLILGYKWS 514
Query: 156 FTMMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGASLNL 215
+L + + FGI+ + G + + L AI + L + + +
Sbjct: 515 VP---ELLGMVGAMFGAFGILGLLVVGLI---LVPGLVAIGQGILGFEGV-LSLLSDVLS 567
Query: 216 YLDVINIFLSILQILGAAN 234
YL ++ + L+ I N
Sbjct: 568 YLRLLALGLAGASIASVVN 586
Score = 28.5 bits (64), Expect = 3.5
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 156 FTMMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIY 203
+M G+L V +I GI+++ F G ++ + + LGA + + L Y
Sbjct: 585 VNLMTGLLIGSVPFGIILGIIILIF-GHLLNIALSILGAGVHGLRLHY 631
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 32.2 bits (74), Expect = 0.22
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 106 IFLGIFTLAESFLLGVISSRYNAEYV--FYAAVITCVICLALTIFAFQTKIDFTMMGGIL 163
+ +G+ L LLG I++ +Y F A + +I L + + + G L
Sbjct: 450 LLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVL-GGFGLVVGLGPL 508
Query: 164 FVCVIVLMIFGIVMIFF----HGKVMTLIYASLGAILFSVYL 201
+ L+I G+V+I GK + LG + YL
Sbjct: 509 GLIGKYLIIGGVVLIILGEGIDGKSLGGALGGLGLYEITGYL 550
>gnl|CDD|226404 COG3887, COG3887, Predicted signaling protein consisting of a
modified GGDEF domain and a DHH domain [Signal
transduction mechanisms].
Length = 655
Score = 31.9 bits (73), Expect = 0.33
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 161 GILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQL 207
+F+ +I I I++ F ++ I L + L+ T
Sbjct: 11 SYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLF 57
>gnl|CDD|147531 pfam05393, Hum_adeno_E3A, Human adenovirus early E3A
glycoprotein. This family consists of several early
glycoproteins from human adenoviruses.
Length = 94
Score = 27.3 bits (60), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 29 GMFWIAFIAMFVTLIC--ITCCESVRRSSP 56
GM+W + MFV LI + CC +R+ P
Sbjct: 34 GMWWFSIALMFVCLIIMWLICCLKRKRARP 63
>gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed.
Length = 467
Score = 28.5 bits (64), Expect = 3.5
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 163 LFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGASL 213
L C+ + +I + ++ H + ASL A+ F L++ QL+IG +
Sbjct: 327 LVACIALALIIFTLGVYQHATSEYMYLASLFALGF---LVFGPQLLIGVAA 374
>gnl|CDD|177009 CHL00070, petB, cytochrome b6.
Length = 215
Score = 27.4 bits (61), Expect = 6.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 156 FTMMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSV 199
F +GGI C +V + G M F++ +T +AS+ I+ V
Sbjct: 33 FYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEV 76
>gnl|CDD|225832 COG3295, COG3295, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 213
Score = 27.1 bits (60), Expect = 7.8
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 162 ILFVCVIVLMIFGIVMIFFHGK--VMTLIYASLGAIL 196
+L V ++VL + G+ ++ H K + LG++L
Sbjct: 168 LLAVALLVLALTGLALLVLHTKRRRVGWPLVGLGSVL 204
>gnl|CDD|221781 pfam12805, FUSC-like, FUSC-like inner membrane protein yccS. This
family has similarities to the fusaric acid resistance
protein family. The proteins are lodged in the inner
membrane.
Length = 284
Score = 27.2 bits (61), Expect = 7.9
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 18/104 (17%)
Query: 135 AVITCVICLALTIFAFQTKIDFTMMGGILFVCVIVLMIFGIVM----------IFFHGKV 184
++ +IC A++ + Q LF + L F +M I F +
Sbjct: 1 NLLLTLICFAISSLSVQ----LLFPYPWLFALGLALSTFLFIMLGALGQRYATIAF-ATL 55
Query: 185 MTLIYASLGAILFSVYLIYDTQLMIGASLNLYLDVINIFLSILQ 228
+ IY LGA F + L++GA Y ++++ +L
Sbjct: 56 LVAIYTMLGAGPFPEWWQQPLLLLLGAL--WYG-LLSLLWHLLF 96
>gnl|CDD|225836 COG3299, XkdT, Uncharacterized homolog of phage Mu protein gp47
[Function unknown].
Length = 353
Score = 27.0 bits (60), Expect = 8.2
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 187 LIYASLGAILFSVYLIYDTQLMIG--ASLNLYLDVINIF 223
+I + + A + SV + D L I +L + L I I
Sbjct: 305 VILSQIYAAISSVPGVIDFSLTIPLANALAISLADIEIP 343
>gnl|CDD|223205 COG0127, COG0127, Xanthosine triphosphate pyrophosphatase
[Nucleotide transport and metabolism].
Length = 194
Score = 26.8 bits (60), Expect = 8.8
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 158 MMGGIL-----FVCVIVLMIFGIVMIFFHGKV 184
++ G+ FVCVIVL G I F G+V
Sbjct: 105 LLEGVPDRSAYFVCVIVLARDGGEPIVFEGEV 136
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 27.1 bits (61), Expect = 8.8
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 172 IFGIVMIFFHGKVMTLI----YASLGAILFSVYLIYDTQLMIGASLNLYLD 218
+ IVMI L A+ A + L+ QL +G L + LD
Sbjct: 116 LLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGGILIILLD 166
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 27.1 bits (61), Expect = 9.1
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 106 IFLGIFT--LAESFLLGVISSRYNAEYVFYAAVITCVICLALTIF--AFQTKIDFTMMGG 161
G+F LA FLLG+ + R N +++ ++ +++ A T I F + G
Sbjct: 402 KLTGLFGGGLAGLFLLGIFTKRANNRGALAGIIVSVLVTFWISLSTGALYTPIHFYLYG- 460
Query: 162 ILFVCVIVLMIFGIVMIFF 180
+ ++V + G ++
Sbjct: 461 --VIGILVCFVVGYLVSLL 477
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 27.3 bits (61), Expect = 9.5
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 130 YVFYAAVITCVICLALTIFAFQTKIDF-TMMGGILFVCVIVLMIFGIVMIFFHGKVMTLI 188
VF A V+ + +AL I + I T+ G IL + V++ I K +
Sbjct: 958 IVFTALVVIVNLKIALEINRW-NWISLITIWGSILVWLIFVIVYSSIFPSPAFYKAAPRV 1016
Query: 189 YASLG--AILFSVYLI 202
+ G +L + LI
Sbjct: 1017 MGTFGFWLVLLVIVLI 1032
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.336 0.145 0.441
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,820,817
Number of extensions: 1146035
Number of successful extensions: 4084
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3802
Number of HSP's successfully gapped: 581
Length of query: 236
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 142
Effective length of database: 6,768,326
Effective search space: 961102292
Effective search space used: 961102292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 57 (25.7 bits)