RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16008
         (236 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.083
 Identities = 45/268 (16%), Positives = 75/268 (27%), Gaps = 99/268 (36%)

Query: 1   MIQIGVSATFIGLFTLHQPTKLYVL------QHPGMFWIAFIAMFVTLICITCCESVRRS 54
           ++ I +S   IG+  L      YV+        PG        +   L   T        
Sbjct: 231 LLSIPISCPLIGVIQLAH----YVVTAKLLGFTPG-------ELRSYLKGATGHSQ---- 275

Query: 55  SPMNVIFLGIFT---LAECT-----FCNTLAC------SGSRSSPCLSRSFVSRASVRRS 100
                   G+ T   +AE       F +           G R       + +  + +  S
Sbjct: 276 --------GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327

Query: 101 --------SPMNVIFLGIFTLAESFLLGVIS--------------SRYNAEYVFYAAVIT 138
                   SPM    L I  L +  +   ++              S  N        V++
Sbjct: 328 LENNEGVPSPM----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL---VVS 380

Query: 139 ------CVICLAL-TIFA----FQTKIDFTMMGGILFVCVIVLMIFGIVMIFFHGKVMT- 186
                   + L L    A     Q++I F+         +     F  V   FH  ++  
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK------LKFSNRFLPVASPFHSHLLVP 434

Query: 187 ---LIYASL--GAILFSV-YL---IYDT 205
              LI   L    + F+   +   +YDT
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDT 462


>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
           blood coagulation, oxidoreduc blood
           coagulation,oxidoreductase; HET: U10; 3.60A
           {Synechococcus SP}
          Length = 291

 Score = 31.2 bits (69), Expect = 0.29
 Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 3/120 (2%)

Query: 93  SRASVRRSSPMNVIFLGIFTLAESFLLGVISSRYNAEYVFYAAVITCVICLALTIFAFQT 152
               ++R S + +  L       +  L   +        F        + L+ + +A   
Sbjct: 11  EETWLQRHSRLILAILAGLGSLLTAYL-TYTKLTEQPAAFCTGDGGSDLVLS-SRWAEFL 68

Query: 153 KIDFTMMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYA-SLGAILFSVYLIYDTQLMIGA 211
            I    +G + F+ V+ L +    +          ++        F +Y++Y    ++  
Sbjct: 69  GIPTAAVGLLGFLGVLALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQ 128


>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
           transport protein; HET: ANP; 2.90A {Thermotoga maritima}
          Length = 587

 Score = 27.9 bits (63), Expect = 3.6
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 156 FTMMGGILFVCVIVLMIFGIVMIFFHGKVMTLIYA-SLGAILFSVYLI 202
             MM   + V   +L + GIVM       ++ +    +  I+     +
Sbjct: 136 LVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWL 183


>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair,
           exonuclease, hydrolase, nuclease, nucleus,
           phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A
           {Homo sapiens} PDB: 3g65_B 3ggr_C
          Length = 263

 Score = 27.6 bits (61), Expect = 3.8
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 174 GIVMIFFHGKVMTLIYASLGAILFSVYLIYDTQLMIGASLNLYLDVINIF 223
           GI +   + K +    A + A +F  + + +  +    +L + LD ++IF
Sbjct: 36  GIKVTVENAKCV-QANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 84


>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
           transport, SGLT, ION TRAN membrane, sodium transport,
           symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
          Length = 530

 Score = 27.0 bits (60), Expect = 5.8
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 117 FLLGVISSRYNAEYVFYAAVITCVICLALTIFAFQTKIDFTMMGGILFV-CVIVLMIFGI 175
           FLLG+   +  ++      V +    L L        + F        +  ++V+    +
Sbjct: 413 FLLGLFWKKTTSKGAIIGVVASIPFALFLKFMPLS--MPFMDQMLYTLLFTMVVIAFTSL 470

Query: 176 V 176
            
Sbjct: 471 S 471


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 26.2 bits (57), Expect = 9.0
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 9/36 (25%)

Query: 40 VTLICITCCESVRRSSPMNVIFLGIFTLAE--CTFC 73
          + L C  C     +  P  ++    F+  +  C  C
Sbjct: 20 IVLTCPEC-----KVYPPKIVER--FSEGDVVCALC 48


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.336    0.145    0.441 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,421,153
Number of extensions: 195492
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 34
Length of query: 236
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,160,982
Effective search space: 603342390
Effective search space used: 603342390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (25.6 bits)