RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16008
         (236 letters)



>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f
           complex {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 212

 Score = 26.1 bits (57), Expect = 3.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 159 MGGILFVCVIVLMIFGIVMIFFHGKVMTLIYASLGAILFSVY 200
           +GGI F C +V +  G  M F++   +   +AS+  I+  V 
Sbjct: 33  IGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVN 74


>d1sgoa_ d.82.3.1 (A:) Hypothetical protein c14orf129, hspc210
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 139

 Score = 24.8 bits (54), Expect = 6.0
 Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 36 IAMFVTLICITCCESVRRSSPMNVIFLGIFTLAECTFCNTLACSG 80
          +   V  + ++  +S+R +   +V ++ + T     +C  L  +G
Sbjct: 44 VLFAVNNMFVS--KSLRCAD--DVAYINVETKERNRYCLELTEAG 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.336    0.145    0.441 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 818,295
Number of extensions: 35005
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 37
Length of query: 236
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 153
Effective length of database: 1,268,006
Effective search space: 194004918
Effective search space used: 194004918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 51 (23.7 bits)