BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16012
(712 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/253 (42%), Positives = 157/253 (62%), Gaps = 21/253 (8%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R +LLDWL EVCEVY LHRETFYL D+ DRY++T N+V K LQLIG+++L IAAK+E
Sbjct: 50 RAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV-KTLLQLIGISSLFIAAKLE 108
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
EIYPPK+ +AYVTDGACS +IL+ E+ I+ L+W ++P+T WLNV++QV Y +
Sbjct: 109 EIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAY--LND 166
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGL 423
H + + P + + ++ Q LLDLC LD+ CL + Y +LA +A+Y S EL +SG
Sbjct: 167 LHEV--LLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSSELMQKVSGY 224
Query: 424 RLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRH-NNVFDY-AYSYHKHSV 481
+ +E+C++WM + +++ E L+H V D A++ H
Sbjct: 225 QWCDIENCVKWMVPFAMVI--------------RETGSSKLKHFRGVADEDAHNIQTHRD 270
Query: 482 SMELSDLAIAESA 494
S++L D A A+ A
Sbjct: 271 SLDLLDKARAKKA 283
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 105 PPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVF-WIITGL 163
P R SP P L WAN E++W ++ K++ LRD H L++HP + P+MR + W++
Sbjct: 4 PSRGSPLPVLSWANREEVWKIMLNKEKT--YLRDQHFLEQHPLLQPKMRAILLDWLME-- 59
Query: 164 SLKMFMMYEYRLYCVNNYFLFTIFTPSNIVLPILTLNKVT 203
+++ ++ Y ++F + T N+V +L L ++
Sbjct: 60 VCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGIS 99
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 627 DQDSLSLRDPHMLDRHPSIVPRMRTLSVSY 656
+++ LRD H L++HP + P+MR + + +
Sbjct: 27 NKEKTYLRDQHFLEQHPLLQPKMRAILLDW 56
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 17 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 76
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 77 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 134
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 135 LTFDLAAPTVNQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 181
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LESL+ C+
Sbjct: 182 KYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCL 224
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 14 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 73
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 74 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 131
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 132 LTFDLAAPTVNQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 178
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LESL+ C+
Sbjct: 179 KYLPSVIAAAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCL 221
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 12 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 71
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 72 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 129
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 130 LTFDLAAPTVNQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 176
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LESL+ C+
Sbjct: 177 KYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCL 219
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 13 TYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 72
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD S + +L E +L V
Sbjct: 73 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKV 130
Query: 337 LEWNITPVTAHYWLNVFL 354
L +++ T + +L +
Sbjct: 131 LAFDLAAPTVNQFLTQYF 148
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 10 TYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 69
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD S + +L E +L V
Sbjct: 70 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKV 127
Query: 337 LEWNITPVTAHYWLNVFL 354
L +++ T + +L +
Sbjct: 128 LAFDLAAPTVNQFLTQYF 145
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 13 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 72
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 73 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 130
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 131 LTFDLAAPTVNQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 177
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LESL+ C+
Sbjct: 178 KYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCL 220
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 10 TYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 69
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD S + +L E +L V
Sbjct: 70 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKV 127
Query: 337 LEWNITPVTAHYWLNVFL 354
L +++ T + +L +
Sbjct: 128 LAFDLAAPTVNQFLTQYF 145
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 11 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 70
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 71 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 128
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 129 LTFDLAAPTVNQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 175
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LESL+ C+
Sbjct: 176 KYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCL 218
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 12 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 71
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 72 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 129
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 130 LTFDLAAPTVNQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 176
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LESL+ C+
Sbjct: 177 KYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCL 219
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 10 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 69
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 70 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 127
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 128 LTFDLAAPTVNQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 174
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LESL+ C+
Sbjct: 175 KYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCL 217
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 10 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 69
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 70 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 127
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 128 LTFDLAAPTVNQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 174
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LESL+ C+
Sbjct: 175 KYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCL 217
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 8 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 67
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 68 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 125
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 126 LTFDLAAPTVNQFLTQYF--LHQQPANC-------KVESLAMFLGELSLIDAD----PYL 172
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LESL+ C+
Sbjct: 173 KYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCL 215
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 91/148 (61%), Gaps = 4/148 (2%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 14 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 73
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 74 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 131
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRC 364
L +++ T + +L + ++ + + C
Sbjct: 132 LTFDLAAPTVNQFLTQYF--LHQQPANC 157
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 91/148 (61%), Gaps = 4/148 (2%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 14 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 73
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 74 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 131
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRC 364
L +++ T + +L + ++ + + C
Sbjct: 132 LTFDLAAPTVNQFLTQYF--LHQQPANC 157
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 14 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 73
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 74 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 131
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 132 LAFDLAAPTINQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 178
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LE+L+ C+
Sbjct: 179 KYLPSVIAAAAFHLALYTVTGQSWPESLVQKTGYTLETLKPCL 221
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 14 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 73
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 74 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 131
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 132 LAFDLAAPTINQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 178
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LE+L+ C+
Sbjct: 179 KYLPSVIAAAAFHLALYTVTGQSWPESLVQKTGYTLETLKPCL 221
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 14 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 73
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 74 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 131
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 132 LAFDLAAPTINQFLTQYF--LHQQPANC-------KVESLAMFLGELSLIDAD----PYL 178
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LE+L+ C+
Sbjct: 179 KYLPSVIAAAAFHLALYTVTGQSWPESLVQKTGYTLETLKPCL 221
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 14 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 73
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 74 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 131
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 132 LAFDLAAPTINQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 178
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LE+L+ C+
Sbjct: 179 KYLPSVIAAAAFHLALYTVTGQSWPESLVQKTGYTLETLKPCL 221
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 14 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 73
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 74 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 131
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 132 LAFDLAAPTINQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 178
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LE+L+ C+
Sbjct: 179 KYLPSVIAAAAFHLALYTVTGQSWPESLVQKTGYTLETLKPCL 221
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 217 TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYL 276
T+L M+ + + K G + + R +L+DWL EV E Y L ET +L ++YIDR+L
Sbjct: 14 TYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFL 73
Query: 277 STNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAV 336
S+ + V + +LQL+G AA+++A+K EEIYPP+V+++ Y+TD + + +L E +L V
Sbjct: 74 SSMS--VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV 131
Query: 337 LEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396
L +++ T + +L + ++ + + C S ++ + L+D L
Sbjct: 132 LAFDLAAPTINQFLTQYF--LHQQPANCK-------VESLAMFLGELSLIDAD----PYL 178
Query: 397 NYSYSVLATTAIYLVCSK-------ELACMISGLRLESLEDCI 432
Y SV+A A +L E +G LE+L+ C+
Sbjct: 179 KYLPSVIAAAAFHLALYTVTGQSWPESLVQKTGYTLETLKPCL 221
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R +L+DWL +V + L +ET Y+T+ IDR++ N+ VPK+ LQL+GV A+ IA+K E
Sbjct: 38 RAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS--VPKKMLQLVGVTAMFIASKYE 95
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNIT-PVTAHY 348
E+YPP++ D+A+VTD + I EM IL L + + P+ H+
Sbjct: 96 EMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHF 141
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 76/125 (60%), Gaps = 11/125 (8%)
Query: 233 EVEALQVKYL--------PRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVP 284
E +A++ KYL R +L+DWL +V + L +ET Y+T+ IDR++ N VP
Sbjct: 17 EEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNC--VP 74
Query: 285 KQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNIT-P 343
K+ LQL+GV A+ IA+K EE+YPP++ D+A+VTD + I EM IL L + + P
Sbjct: 75 KKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRP 134
Query: 344 VTAHY 348
+ H+
Sbjct: 135 LPLHF 139
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 17/210 (8%)
Query: 238 QVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVP--KQQLQLIGVAA 295
++K R +L W+ EVCE E F L ++Y+DRYLS VP K QLQL+G
Sbjct: 65 EIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLS----CVPTRKAQLQLLGAVC 120
Query: 296 LMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQ 355
+++A+K+ E P + TD A S + + E+ +L L+W++ V AH FL
Sbjct: 121 MLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHD----FLA 176
Query: 356 VVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKE 415
+ HR S + + ++T L LC D Y S++AT +I
Sbjct: 177 FILHRLSLPRDRQALVKKHAQT-------FLALCATDYTFAMYPPSMIATGSIGAAVQGL 229
Query: 416 LACMISGLRLESLEDCIEWMNIYWVILCEK 445
AC +SG L L I + + C++
Sbjct: 230 GACSMSGDELTELLAGITGTEVDCLRACQE 259
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
RT+LL W+ +CE + L + F L++ +DRYL K+ LQ IG A ++I +K+
Sbjct: 52 RTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQG--TKKTLQKIGAACVLIGSKIR 109
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWL 350
+ P VS Y++ ++ ++++ E +IL L+W+ V A +L
Sbjct: 110 TVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFL 156
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
RT+LL W+ +CE + L + F L++ +DRYL K+ LQ IG A ++I +K+
Sbjct: 31 RTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQG--TKKTLQKIGAACVLIGSKIR 88
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWL 350
+ P VS Y++ ++ ++++ E +IL L+W+ V A +L
Sbjct: 89 TVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFL 135
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 235 EALQVKYLP--RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIG 292
+ +Q + LP R ++ W+ EVCE E F L ++Y+DR+LS V K +LQL+G
Sbjct: 46 KCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEP--VKKSRLQLLG 103
Query: 293 VAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNV 352
+ +A+K++E P TD + +++L E+ ++ L+WN+ +T H ++
Sbjct: 104 ATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEH 163
Query: 353 FL 354
FL
Sbjct: 164 FL 165
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 235 EALQVKYLP--RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIG 292
+ +Q + LP R ++ W+ EVCE E F L ++Y+DR+LS V K +LQL+G
Sbjct: 32 KCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEP--VKKSRLQLLG 89
Query: 293 VAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNV 352
+ +A+K++E P TD + +++L E+ ++ L+WN+ +T H ++
Sbjct: 90 ATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEH 149
Query: 353 FL 354
FL
Sbjct: 150 FL 151
>pdb|1F5Q|B Chain B, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|D Chain D, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
Length = 252
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDR-YLSTNANIVPKQQLQLIGVAALMIAAKV 302
R VL W+ VC+ F L + +D +LST + ++ Q AL IA KV
Sbjct: 49 RKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR---IDRENYQSTAAVALHIAGKV 105
Query: 303 EEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEW 339
P K + AY+ GA ++ +L+ E+ L L W
Sbjct: 106 RAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSW 142
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R +L W+ VC+ Y L E + + V K+ Q G A L++A+K+
Sbjct: 51 RKLLGTWMFSVCQEYNL--EPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLR 108
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTA 346
+ P S Y + S Q+++ E +L L W V A
Sbjct: 109 SLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLA 151
>pdb|1C3D|A Chain A, X-ray Crystal Structure Of C3d: A C3 Fragment And Ligand
For Complement Receptor 2
pdb|2XQW|A Chain A, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
pdb|2XQW|B Chain B, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 294
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 419 MISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHK 478
MI GLR + +D M + +L D C+ N LP + + + Y +
Sbjct: 136 MIGGLRNNNEKD----MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ 191
Query: 479 HSVSMELSDLAIAESAKL-----------LKEEQQPTTPGNRTYSVPC 515
S ++ ++ A+A+ +L K++ + PG + Y+V
Sbjct: 192 RSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEA 239
>pdb|1GHQ|A Chain A, Cr2-C3d Complex Structure
Length = 308
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 419 MISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHK 478
MI GLR + +D M + +L D C+ N LP + + + Y +
Sbjct: 136 MIGGLRNNNEKD----MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ 191
Query: 479 HSVSMELSDLAIAESAKL-----------LKEEQQPTTPGNRTYSVPC 515
S ++ ++ A+A+ +L K++ + PG + Y+V
Sbjct: 192 RSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEA 239
>pdb|1W2S|A Chain A, Solution Structure Of Cr2 Scr 1-2 In Its Complex With C3d
By X-Ray Scattering
Length = 307
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 419 MISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHK 478
MI GLR + +D M + +L D C+ N LP + + + Y +
Sbjct: 136 MIGGLRNNNEKD----MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ 191
Query: 479 HSVSMELSDLAIAESAKL-----------LKEEQQPTTPGNRTYSVPC 515
S ++ ++ A+A+ +L K++ + PG + Y+V
Sbjct: 192 RSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEA 239
>pdb|2WY7|A Chain A, Staphylococcus Aureus Complement Subversion Protein Sbi-Iv
In Complex With Complement Fragment C3d Revealing An
Alternative Binding Mode
pdb|2WY8|A Chain A, Staphylococcus Aureus Complement Subversion Protein Sbi-Iv
In Complex With Complement Fragment C3d
pdb|3OED|A Chain A, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
pdb|3OED|B Chain B, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
Length = 310
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 419 MISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHK 478
MI GLR + +D M + +L D C+ N LP + + + Y +
Sbjct: 136 MIGGLRNNNEKD----MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ 191
Query: 479 HSVSMELSDLAIAESAKL-----------LKEEQQPTTPGNRTYSVPC 515
S ++ ++ A+A+ +L K++ + PG + Y+V
Sbjct: 192 RSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEA 239
>pdb|2GOX|A Chain A, Crystal Structure Of Efb-c / C3d Complex
pdb|2GOX|C Chain C, Crystal Structure Of Efb-c / C3d Complex
pdb|2NOJ|A Chain A, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|C Chain C, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|E Chain E, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|G Chain G, Crystal Structure Of Ehp C3D COMPLEX
pdb|3D5R|A Chain A, Crystal Structure Of Efb-C (N138a) C3D COMPLEX
pdb|3D5R|B Chain B, Crystal Structure Of Efb-C (N138a) C3D COMPLEX
pdb|3D5S|A Chain A, Crystal Structure Of Efb-C (R131a) C3D COMPLEX
pdb|3D5S|B Chain B, Crystal Structure Of Efb-C (R131a) C3D COMPLEX
Length = 297
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 419 MISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHK 478
MI GLR + +D M + +L D C+ N LP + + + Y +
Sbjct: 139 MIGGLRNNNEKD----MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ 194
Query: 479 HSVSMELSDLAIAESAKL-----------LKEEQQPTTPGNRTYSVPC 515
S ++ ++ A+A+ +L K++ + PG + Y+V
Sbjct: 195 RSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEA 242
>pdb|3OXU|A Chain A, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|B Chain B, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|C Chain C, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3RJ3|A Chain A, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|B Chain B, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|C Chain C, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
Length = 317
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 419 MISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHK 478
MI GLR + +D M + +L D C+ N LP + + + Y +
Sbjct: 143 MIGGLRNNNEKD----MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ 198
Query: 479 HSVSMELSDLAIAESAKL-----------LKEEQQPTTPGNRTYSVPC 515
S ++ ++ A+A+ +L K++ + PG + Y+V
Sbjct: 199 RSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEA 246
>pdb|2A73|B Chain B, Human Complement Component C3
Length = 991
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 419 MISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHK 478
MI GLR + +D M + +L D C+ N LP + + + Y +
Sbjct: 457 MIGGLRNNNEKD----MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ 512
Query: 479 HSVSMELSDLAIAESAKL-----------LKEEQQPTTPGNRTYSV 513
S ++ ++ A+A+ +L K++ + PG + Y+V
Sbjct: 513 RSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNV 558
>pdb|2I07|B Chain B, Human Complement Component C3b
pdb|2XWJ|B Chain B, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|D Chain D, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|F Chain F, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|H Chain H, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 915
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 419 MISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHK 478
MI GLR + +D M + +L D C+ N LP + + + Y +
Sbjct: 381 MIGGLRNNNEKD----MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ 436
Query: 479 HSVSMELSDLAIAESAKL-----------LKEEQQPTTPGNRTYSV 513
S ++ ++ A+A+ +L K++ + PG + Y+V
Sbjct: 437 RSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNV 482
>pdb|2HR0|B Chain B, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2ICF|B Chain B, Crig Bound To C3b
pdb|3G6J|B Chain B, C3b In Complex With A C3b Specific Fab
pdb|3G6J|D Chain D, C3b In Complex With A C3b Specific Fab
pdb|2WII|B Chain B, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|B Chain B, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|D Chain D, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|F Chain F, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|H Chain H, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L5N|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
Length = 915
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 419 MISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHK 478
MI GLR + +D M + +L D C+ N LP + + + Y +
Sbjct: 381 MIGGLRNNNEKD----MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ 436
Query: 479 HSVSMELSDLAIAESAKL-----------LKEEQQPTTPGNRTYSV 513
S ++ ++ A+A+ +L K++ + PG + Y+V
Sbjct: 437 RSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNV 482
>pdb|2XWB|B Chain B, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|D Chain D, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 912
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 419 MISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHK 478
MI GLR + +D M + +L D C+ N LP + + + Y +
Sbjct: 378 MIGGLRNNNEKD----MALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ 433
Query: 479 HSVSMELSDLAIAESAKL-----------LKEEQQPTTPGNRTYSV 513
S ++ ++ A+A+ +L K++ + PG + Y+V
Sbjct: 434 RSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNV 479
>pdb|1SY7|A Chain A, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution.
pdb|1SY7|B Chain B, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution
Length = 715
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 457 NELPPGPLRHNNVFDYAYSYHK--HSVSMELSDLAIAESAKLLK 498
NE+P HNN +D+ +++ + H + +SD AI S ++++
Sbjct: 170 NEVPQAQSAHNNFWDFQFNHTEATHMFTWAMSDRAIPRSLRMMQ 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,839,712
Number of Sequences: 62578
Number of extensions: 715224
Number of successful extensions: 1302
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 44
length of query: 712
length of database: 14,973,337
effective HSP length: 106
effective length of query: 606
effective length of database: 8,340,069
effective search space: 5054081814
effective search space used: 5054081814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)