Query psy16012
Match_columns 712
No_of_seqs 309 out of 1572
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 18:42:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w98_B Cyclin E, G1/S-specific 100.0 6.8E-50 2.3E-54 416.9 25.7 278 105-492 4-281 (283)
2 1f5q_B Gamma herpesvirus cycli 100.0 1.3E-41 4.5E-46 350.1 19.7 227 185-441 7-242 (252)
3 2f2c_A Cyclin homolog, V-cycli 100.0 4.9E-41 1.7E-45 344.1 19.6 190 238-440 46-247 (254)
4 1g3n_C V-cyclin; cyclin-depend 100.0 7.5E-41 2.6E-45 343.3 20.5 191 238-441 45-248 (257)
5 3g33_B CCND3 protein; Ser/Thr 100.0 4.3E-40 1.5E-44 347.1 20.4 190 238-440 65-266 (306)
6 2cch_B Cyclin A2, cyclin-A; co 100.0 5.6E-39 1.9E-43 329.9 18.9 214 212-441 5-228 (260)
7 2b9r_A Human cyclin B1; cell c 100.0 2.5E-38 8.4E-43 327.2 18.3 214 211-442 4-226 (269)
8 2w96_A G1/S-specific cyclin-D1 100.0 6.2E-38 2.1E-42 324.0 21.2 222 193-440 18-256 (271)
9 2i53_A Cyclin K; cell cycle, t 100.0 3.2E-31 1.1E-35 270.7 13.7 188 238-439 35-249 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 1E-30 3.5E-35 267.4 16.1 182 241-440 28-239 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 2.7E-30 9.3E-35 269.5 19.3 184 242-442 41-243 (285)
12 1zp2_A RNA polymerase II holoe 100.0 7.6E-30 2.6E-34 258.2 17.4 179 244-440 28-219 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 8.2E-30 2.8E-34 274.3 8.1 181 241-439 35-245 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 8.7E-28 3E-32 255.1 18.8 188 242-440 55-260 (323)
15 1c9b_A General transcription f 99.9 5.1E-23 1.7E-27 204.1 21.9 179 242-440 3-188 (207)
16 1ais_B TFB TFIIB, protein (tra 99.8 5.2E-19 1.8E-23 174.2 20.2 177 243-439 8-193 (200)
17 3k7a_M Transcription initiatio 99.6 9.1E-16 3.1E-20 164.2 5.0 177 244-440 126-321 (345)
18 4bbr_M Transcription initiatio 99.0 2.9E-10 9.8E-15 122.0 8.3 176 245-440 127-321 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.0 1.8E-05 6.3E-10 83.1 10.5 108 246-356 76-184 (293)
20 1ais_B TFB TFIIB, protein (tra 94.8 0.086 3E-06 51.2 8.8 90 248-342 109-198 (200)
21 1c9b_A General transcription f 88.0 1.8 6E-05 42.2 9.1 76 347-437 9-91 (207)
22 2b9r_A Human cyclin B1; cell c 83.2 1 3.4E-05 46.1 4.7 194 116-334 4-220 (269)
23 2ivx_A Cyclin-T2; transcriptio 82.0 6.8 0.00023 39.3 10.3 89 248-337 147-238 (257)
24 2i53_A Cyclin K; cell cycle, t 76.2 10 0.00035 37.9 9.5 89 248-338 152-250 (258)
25 4bbr_M Transcription initiatio 76.1 8 0.00027 41.2 9.1 80 345-439 128-214 (345)
26 2cch_B Cyclin A2, cyclin-A; co 74.8 4.6 0.00016 40.8 6.5 189 118-337 6-226 (260)
27 2pk2_A Cyclin-T1, protein TAT; 74.5 5.6 0.00019 42.5 7.4 88 249-337 155-245 (358)
28 3k7a_M Transcription initiatio 72.3 3.1 0.00011 44.2 4.7 79 347-440 130-215 (345)
29 3rgf_B Cyclin-C; protein kinas 71.0 7.3 0.00025 40.1 7.0 81 249-336 159-239 (285)
30 1zp2_A RNA polymerase II holoe 68.0 20 0.00068 35.5 9.3 38 376-413 46-84 (235)
31 2f2c_A Cyclin homolog, V-cycli 51.1 35 0.0012 34.2 7.7 207 105-337 8-246 (254)
32 1g3n_C V-cyclin; cyclin-depend 46.5 37 0.0013 34.0 7.1 206 105-336 7-245 (257)
33 1jkw_A Cyclin H; cell cycle, c 41.9 62 0.0021 33.8 8.1 90 246-337 166-259 (323)
34 3h4c_A Transcription factor TF 40.7 59 0.002 32.8 7.1 89 246-338 14-103 (260)
35 2w96_A G1/S-specific cyclin-D1 40.0 1.4E+02 0.0047 30.1 10.1 60 378-437 77-146 (271)
36 3g33_B CCND3 protein; Ser/Thr 32.5 1.7E+02 0.0058 30.2 9.6 58 378-435 91-158 (306)
37 1w98_B Cyclin E, G1/S-specific 24.5 2.4E+02 0.0082 28.6 8.9 62 376-437 68-140 (283)
38 3h0g_A DNA-directed RNA polyme 21.9 19 0.00065 46.2 0.0 26 243-268 1350-1375(1752)
39 3h0g_A DNA-directed RNA polyme 20.1 22 0.00075 45.7 0.0 6 401-406 1401-1406(1752)
No 1
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.8e-50 Score=416.86 Aligned_cols=278 Identities=44% Similarity=0.859 Sum_probs=246.6
Q ss_pred CCCCCCCCCCccCChhHHHHHHHhcccccccccCccccccCCCCCCCCCCchhhhhhccchhhhhhHhhhhhhccccccc
Q psy16012 105 PPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVFWIITGLSLKMFMMYEYRLYCVNNYFLF 184 (712)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~y~~~~~C~~~~~~~ 184 (712)
|.|++|.|.|.|++.+|+|..|..++. .+..++++++.+|+|.++||.
T Consensus 4 ~~~~~~~p~l~~~y~~~i~~~l~~~E~--~~~~~~~y~~~q~~i~~~~R~------------------------------ 51 (283)
T 1w98_B 4 PSRGSPLPVLSWANREEVWKIMLNKEK--TYLRDQHFLEQHPLLQPKMRA------------------------------ 51 (283)
T ss_dssp ----CCSCCCSSSCHHHHHHHHHHHTT--TSCCCTTGGGGCTTCCHHHHH------------------------------
T ss_pred CCCCCCCcchhhcCHHHHHHHHHHHHH--HhCCCchhhccCCCCCHHHHH------------------------------
Confidence 679999999999999999999999998 677788888887777666666
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhhcCChHHHHHhhhhhccccccchhhccCCcccHHHHHHHHHHHHHHhcCchhH
Q psy16012 185 TIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRET 264 (712)
Q Consensus 185 ~~~~~s~~v~P~l~~nr~l~~Ls~~ee~y~ps~yl~~~q~E~q~~~~~~~~q~eIt~~~R~iLVDWL~EV~~~ykLs~ET 264 (712)
++++||++|+.+|++.++|
T Consensus 52 -------------------------------------------------------------~lv~wl~~v~~~~~l~~~t 70 (283)
T 1w98_B 52 -------------------------------------------------------------ILLDWLMEVCEVYKLHRET 70 (283)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHTTCBHHH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHhCCCccH
Confidence 9999999999999999999
Q ss_pred HHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHHHHHHHHHHHHHHcCccccCC
Q psy16012 265 FYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPV 344 (712)
Q Consensus 265 ~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~EIl~mE~~ILktL~WdL~~p 344 (712)
+++||+|||||++..+ .+.++++||+|+||||||+|+||..+|.+.+|++++++.|++++|++||+.||++|+|+++++
T Consensus 71 l~lAv~~lDRfls~~~-~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~ 149 (283)
T 1w98_B 71 FYLAQDFFDRYMATQE-NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPL 149 (283)
T ss_dssp HHHHHHHHHHHHHHCC-CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCC
Confidence 9999999999999742 267999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHHHHcChhHHHHhhCCC
Q psy16012 345 TAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLR 424 (712)
Q Consensus 345 TP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~f~PSvIAAAAL~lA~~~e~L~~vtGy~ 424 (712)
||++||..|++.++..+. .....+++....+..+.++++++++|+.|++|+||.||||||++|+|.+.+..++|++
T Consensus 150 tp~~fL~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~~~~l~~~tg~~ 225 (283)
T 1w98_B 150 TIVSWLNVYMQVAYLNDL----HEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSSELMQKVSGYQ 225 (283)
T ss_dssp CHHHHHHHHHHHHTCCSS----CCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSCHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHhccCch----hhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHChHHHHHHhCCC
Confidence 999999999998876543 1223455556667778899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcccccccceecccccchhhHHHHHHH
Q psy16012 425 LESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSMELSDLAIAE 492 (712)
Q Consensus 425 ~eeL~eCve~L~~~~~~I~e~~~~~lk~~~~f~~i~~dpdsHNgV~D~s~SiQth~~sl~~l~~a~~~ 492 (712)
+++|.+|+++|.+++..+++.+..+++ .|.++..+ +.|+ ||+|.++++|+++|+.+
T Consensus 226 ~~~i~~c~~~l~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~--------i~~~~~~~~~l~~~~~~ 281 (283)
T 1w98_B 226 WCDIENCVKWMVPFAMVIRETGSSKLK---HFRGVADE-DAHN--------IQTHRDSLDLLDKARAK 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCC---CCTTSCGG-GGGG--------BCCCCCHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHhhc---chhccCHH-hccC--------cccCcchHHHHHhhccc
Confidence 999999999999999999998888887 78888877 8888 99999999999998765
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.3e-41 Score=350.15 Aligned_cols=227 Identities=19% Similarity=0.240 Sum_probs=199.3
Q ss_pred cccCCCcccccccchhHHHHHHHHHhhhcCChHHHHHhhhhhccccccchhhccCCcccHHHHHHHHHHHHHHhcCchhH
Q psy16012 185 TIFTPSNIVLPILTLNKVTRQVSLAVESSVPSTFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRET 264 (712)
Q Consensus 185 ~~~~~s~~v~P~l~~nr~l~~Ls~~ee~y~ps~yl~~~q~E~q~~~~~~~~q~eIt~~~R~iLVDWL~EV~~~ykLs~ET 264 (712)
+.+.+.....|.+..+++.+++...|+.|.| . ..|.+|++.+|.++||||++|+.+|+++++|
T Consensus 7 ~~~~~~~~~dp~l~~d~i~~~l~~~E~~~~p----~-------------~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT 69 (252)
T 1f5q_B 7 QGFLDSSLLNEEDCRQMIYRSEREHDARMVG----V-------------NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNV 69 (252)
T ss_dssp CSSCSCTTCCHHHHHHHHHHHHHHHHHHHSS----S-------------SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTH
T ss_pred CCCCCcCcCCHHHhHHHHHHHHHHHHHHhCc----C-------------ccCCCCCHHHHHHHHHHHHHHHHHcCCChHH
Confidence 3345667778988888888888877777766 1 1245678899999999999999999999999
Q ss_pred HHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHHHHHHHHHHHHHHcCccccCC
Q psy16012 265 FYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPV 344 (712)
Q Consensus 265 ~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~EIl~mE~~ILktL~WdL~~p 344 (712)
+|+||+||||||+... +.++++||+|+||||||+|+||.++|.+.+|++++++.|+.++|++||+.||++|+|+++.|
T Consensus 70 ~~lAv~~lDRfLs~~~--v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~p 147 (252)
T 1f5q_B 70 FPLAVALLDELFLSTR--IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRC 147 (252)
T ss_dssp HHHHHHHHHHHHHHSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHHHHhcCCC--cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCC
Confidence 9999999999999976 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHHHHc-----C----hh
Q psy16012 345 TAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVC-----S----KE 415 (712)
Q Consensus 345 TP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~f~PSvIAAAAL~lA~-----~----~e 415 (712)
||++||++|+..++.... ....+...|.++++++++|+.|+.|+||+|||||+.++. | .+
T Consensus 148 Tp~~FL~~~l~~~~~~~~-----------~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~~~~~~~~ 216 (252)
T 1f5q_B 148 LSTDLICYILHIMHAPRE-----------DYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYDYYENRID 216 (252)
T ss_dssp CHHHHHHHHHHHTTCCHH-----------HHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcc-----------hHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCCchhhHHH
Confidence 999999999998764322 112356789999999999999999999999999987775 2 35
Q ss_pred HHHHhhCCCHHhHHHHHHHHHHHHHH
Q psy16012 416 LACMISGLRLESLEDCIEWMNIYWVI 441 (712)
Q Consensus 416 ~L~~vtGy~~eeL~eCve~L~~~~~~ 441 (712)
.+.+++|+++++|.+|++.|..++..
T Consensus 217 ~L~~~t~~~~~~l~~C~~~i~~~l~~ 242 (252)
T 1f5q_B 217 GVCKSLYITKEELHQCCDLVDIAIVS 242 (252)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999998753
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=4.9e-41 Score=344.14 Aligned_cols=190 Identities=21% Similarity=0.355 Sum_probs=169.4
Q ss_pred cCCcccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCcccccccc
Q psy16012 238 QVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVT 317 (712)
Q Consensus 238 eIt~~~R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~it 317 (712)
++++.+|.+++|||++|+.+|++.++|+|+||+|||||++... +.+.++||+|+||||||+|+||..+|.+.||++++
T Consensus 46 ~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~ 123 (254)
T 2f2c_A 46 EVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQ--GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLS 123 (254)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSC--CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCC--cCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHh
Confidence 3444556699999999999999999999999999999999865 88999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhccccccc
Q psy16012 318 DGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLN 397 (712)
Q Consensus 318 d~~yT~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~ 397 (712)
++.|++++|++||+.||++|+|+++.|||++||.+|+..++.... ....+...|++++++++.|+.|+.
T Consensus 124 ~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~-----------~~~~~~~~a~~ll~~~l~d~~~~~ 192 (254)
T 2f2c_A 124 CDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPED-----------LWPQLYEAASTTICKALIQPNIAL 192 (254)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGG-----------GHHHHHHHHHHHHHHHTTSGGGTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChh-----------hHHHHHHHHHHHHHHHHcCcchhc
Confidence 999999999999999999999999999999999999998875432 112356779999999999999999
Q ss_pred CcHHHHHHHHHHHHc---------C---hhHHHHhhCCCHHhHHHHHHHHHHHHH
Q psy16012 398 YSYSVLATTAIYLVC---------S---KELACMISGLRLESLEDCIEWMNIYWV 440 (712)
Q Consensus 398 f~PSvIAAAAL~lA~---------~---~e~L~~vtGy~~eeL~eCve~L~~~~~ 440 (712)
|+||.||||||++|+ | ...+..++|+++++|.+|++.|..++.
T Consensus 193 ~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 193 LSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFS 247 (254)
T ss_dssp SCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999997 3 467788999999999999999999875
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=7.5e-41 Score=343.33 Aligned_cols=191 Identities=21% Similarity=0.295 Sum_probs=173.1
Q ss_pred cCCcccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCcccccccc
Q psy16012 238 QVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVT 317 (712)
Q Consensus 238 eIt~~~R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~it 317 (712)
+|++.+|.++||||++|+..|++.++|+|+||+|||||++... +.+.++||+|+||||||+|+||..+|.+.+|++++
T Consensus 45 ~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~ 122 (257)
T 1g3n_C 45 SLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQ--VSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAA 122 (257)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHH
Confidence 4555667799999999999999999999999999999999865 88999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhccccccc
Q psy16012 318 DGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLN 397 (712)
Q Consensus 318 d~~yT~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~ 397 (712)
++.|++++|++||+.||++|+|+++.|||++||..|+..++.... ....+...|++++++++.|+.|++
T Consensus 123 ~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~-----------~~~~~~~~a~~~le~~l~d~~~~~ 191 (257)
T 1g3n_C 123 ADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQ-----------HLDFWHHEVNTLITKALVDPLTGS 191 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSST-----------THHHHHHHHHHHHHHHHTSTTGGG
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChh-----------HHHHHHHHHHHHHHHHHhCcchhC
Confidence 999999999999999999999999999999999999998875432 112356779999999999999999
Q ss_pred CcHHHHHHHHHHHHc-------------ChhHHHHhhCCCHHhHHHHHHHHHHHHHH
Q psy16012 398 YSYSVLATTAIYLVC-------------SKELACMISGLRLESLEDCIEWMNIYWVI 441 (712)
Q Consensus 398 f~PSvIAAAAL~lA~-------------~~e~L~~vtGy~~eeL~eCve~L~~~~~~ 441 (712)
|+||.||||||++|+ |.+.+..++|+++++|.+|++.|..++..
T Consensus 192 ~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~ 248 (257)
T 1g3n_C 192 LPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSD 248 (257)
T ss_dssp SCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999996 34567788999999999999999998753
No 5
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-40 Score=347.06 Aligned_cols=190 Identities=30% Similarity=0.464 Sum_probs=172.3
Q ss_pred cCCcccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCcccccccc
Q psy16012 238 QVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVT 317 (712)
Q Consensus 238 eIt~~~R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~it 317 (712)
+|++.+|.++++||++|+..|+|.++|+|+||+||||||+... +.++++||+|+||||||+|+||..+|.+.+|++++
T Consensus 65 ~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~--v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~ 142 (306)
T 3g33_B 65 EIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP--TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYT 142 (306)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHh
Confidence 3455566699999999999999999999999999999999976 88999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhccccccc
Q psy16012 318 DGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLN 397 (712)
Q Consensus 318 d~~yT~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~ 397 (712)
++.|++++|++||+.||++|+|+|+.+||++||.+|+..+..... ....+...+++|+++++.|+.|+.
T Consensus 143 ~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~-----------~~~~~~~~a~~~l~lsl~d~~~l~ 211 (306)
T 3g33_B 143 DHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRD-----------RQALVKKHAQTFLALCATDYTFAM 211 (306)
T ss_dssp TTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTT-----------THHHHHHHHHHHHHHHHHCGGGTT
T ss_pred ccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChh-----------HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999999999999999999999999998765432 112356778999999999999999
Q ss_pred CcHHHHHHHHHHHHc--------C----hhHHHHhhCCCHHhHHHHHHHHHHHHH
Q psy16012 398 YSYSVLATTAIYLVC--------S----KELACMISGLRLESLEDCIEWMNIYWV 440 (712)
Q Consensus 398 f~PSvIAAAAL~lA~--------~----~e~L~~vtGy~~eeL~eCve~L~~~~~ 440 (712)
|+||+||||||++|+ | .+.+..++|+++++|.+|++.|..++.
T Consensus 212 ~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~ 266 (306)
T 3g33_B 212 YPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALR 266 (306)
T ss_dssp SCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999996 2 356788999999999999999999875
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=5.6e-39 Score=329.94 Aligned_cols=214 Identities=30% Similarity=0.477 Sum_probs=189.2
Q ss_pred hcCChHHHHHhhhh--hccccccchhhccCCcccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchh
Q psy16012 212 SSVPSTFLVTMQKE--GQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQ 289 (712)
Q Consensus 212 ~y~ps~yl~~~q~E--~q~~~~~~~~q~eIt~~~R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQ 289 (712)
+|...+|....+.| ..+..+|...|.+|++.+|.+++|||++|+..|+++++|+++||+|||||++... +.+.++|
T Consensus 5 eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~--v~~~~lq 82 (260)
T 2cch_B 5 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMS--VLRGKLQ 82 (260)
T ss_dssp TTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC--CCHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCC--CCHHHHh
Confidence 44445544433334 3334455556788999999999999999999999999999999999999999976 7899999
Q ss_pred hHHHHHHHHHHHhccCCCCCccccccccCCCCCHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhcccccccccccc
Q psy16012 290 LIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGF 369 (712)
Q Consensus 290 LIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~ 369 (712)
|+|+||||||+|+||..+|.+.||++++++.|++++|++||+.||++|+|+++.+||++||..|+..++...
T Consensus 83 lv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~-------- 154 (260)
T 2cch_B 83 LVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN-------- 154 (260)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC--------
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh--------
Confidence 999999999999999999999999999999999999999999999999999999999999999998776422
Q ss_pred ccccchHHHHHHHHHHHHHHhcccc-cccCcHHHHHHHHHHHHc-------ChhHHHHhhCCCHHhHHHHHHHHHHHHHH
Q psy16012 370 IYPAFSRTLYTQCIRLLDLCHLDIR-CLNYSYSVLATTAIYLVC-------SKELACMISGLRLESLEDCIEWMNIYWVI 441 (712)
Q Consensus 370 l~pq~s~~l~~~A~~LLdL~LlD~~-fl~f~PSvIAAAAL~lA~-------~~e~L~~vtGy~~eeL~eCve~L~~~~~~ 441 (712)
..+...|++++++++.|+. |++|+||.||||||++|+ |.+.+..++|+++++|.+|++.|.+++..
T Consensus 155 ------~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~ 228 (260)
T 2cch_B 155 ------CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLK 228 (260)
T ss_dssp ------HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHHHHHHHHHHHHHh
Confidence 2366789999999999999 999999999999999996 67888999999999999999999998754
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=2.5e-38 Score=327.15 Aligned_cols=214 Identities=29% Similarity=0.402 Sum_probs=187.0
Q ss_pred hhcCChHHHHHhhhhhc--cccccchhhccCCcccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcch
Q psy16012 211 ESSVPSTFLVTMQKEGQ--QKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQL 288 (712)
Q Consensus 211 e~y~ps~yl~~~q~E~q--~~~~~~~~q~eIt~~~R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~L 288 (712)
.+|...+|....+.|.+ +..+|...+ +|+..+|.++++||.+|+..|+++++|+++||+|||||++... +.+.++
T Consensus 4 ~eY~~di~~~l~~~E~~~~~~~~y~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~--v~~~~l 80 (269)
T 2b9r_A 4 SEYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS--VPKKML 80 (269)
T ss_dssp ---CCTTTTTHHHHHHTTCCCTTTTSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC--CCGGGH
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC--CcHHHh
Confidence 45666664444444433 334444445 9999999999999999999999999999999999999999976 889999
Q ss_pred hhHHHHHHHHHHHhccCCCCCccccccccCCCCCHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhccccccccccc
Q psy16012 289 QLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLG 368 (712)
Q Consensus 289 QLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~ 368 (712)
||+|+||||||+|+||..+|.+.||++++++.|++++|++||+.||++|+|+++.|||++||..|+..++.+
T Consensus 81 qlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~-------- 152 (269)
T 2b9r_A 81 QLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD-------- 152 (269)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC--------
T ss_pred hHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999998755421
Q ss_pred cccccchHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHHHHc-------ChhHHHHhhCCCHHhHHHHHHHHHHHHHH
Q psy16012 369 FIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVC-------SKELACMISGLRLESLEDCIEWMNIYWVI 441 (712)
Q Consensus 369 ~l~pq~s~~l~~~A~~LLdL~LlD~~fl~f~PSvIAAAAL~lA~-------~~e~L~~vtGy~~eeL~eCve~L~~~~~~ 441 (712)
..+...|++++++++.|+.|++|+||.||||||++|+ |...+..++|+++++|.+|++.|.+++..
T Consensus 153 -------~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~ 225 (269)
T 2b9r_A 153 -------VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPVMQHLAKNVVM 225 (269)
T ss_dssp -------HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3366789999999999999999999999999999997 67888999999999999999999998764
Q ss_pred H
Q psy16012 442 L 442 (712)
Q Consensus 442 I 442 (712)
.
T Consensus 226 ~ 226 (269)
T 2b9r_A 226 V 226 (269)
T ss_dssp T
T ss_pred h
Confidence 3
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=6.2e-38 Score=323.96 Aligned_cols=222 Identities=23% Similarity=0.426 Sum_probs=189.3
Q ss_pred cccccchhHHHHHHHHHhhhcCCh-HHHHHhhhhhccccccchhhccCCcccHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q psy16012 193 VLPILTLNKVTRQVSLAVESSVPS-TFLVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDY 271 (712)
Q Consensus 193 v~P~l~~nr~l~~Ls~~ee~y~ps-~yl~~~q~E~q~~~~~~~~q~eIt~~~R~iLVDWL~EV~~~ykLs~ET~~LAV~y 271 (712)
-.|.+..+++++.+...|+.|.|. .|+...| .+|++.+|.++++||++|+.+|+++++|+++||+|
T Consensus 18 ~dp~~~~~~i~~~l~~~E~~~~p~~~y~~~~q-------------~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~ 84 (271)
T 2w96_A 18 PDANLLNDRVLRAMLKAEETCAPSVSYFKCVQ-------------KEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNY 84 (271)
T ss_dssp -------CHHHHHHHHHHHHTCCCTTHHHHTC-------------SSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHhCCCchHHHhcC-------------CcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHH
Confidence 356666678888888878888774 4665443 35788899999999999999999999999999999
Q ss_pred HHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHHHHHHHHHHHHHHcCccccCCChhHHHH
Q psy16012 272 IDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLN 351 (712)
Q Consensus 272 fDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~EIl~mE~~ILktL~WdL~~pTP~~FL~ 351 (712)
||||++... +.+.++||+|+||||||+|+||..||.+.+|++++++.|++++|++||+.||++|+|+++++||++||.
T Consensus 85 lDRfls~~~--v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~ 162 (271)
T 2w96_A 85 LDRFLSLEP--VKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIE 162 (271)
T ss_dssp HHHHHTTSC--CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHH
T ss_pred HHHhCCcCC--cCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHH
Confidence 999999976 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHHHHcC----------------hh
Q psy16012 352 VFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCS----------------KE 415 (712)
Q Consensus 352 ~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~f~PSvIAAAAL~lA~~----------------~e 415 (712)
+|+..++.... ....+...|++++++++.|+.|+.|+||.||||||++|+. .+
T Consensus 163 ~~~~~l~~~~~-----------~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~ 231 (271)
T 2w96_A 163 HFLSKMPEAEE-----------NKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTR 231 (271)
T ss_dssp HHHHTSCCCHH-----------HHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHH
T ss_pred HHHHHcCCCch-----------HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHH
Confidence 99988764322 1122346789999999999999999999999999999962 13
Q ss_pred HHHHhhCCCHHhHHHHHHHHHHHHH
Q psy16012 416 LACMISGLRLESLEDCIEWMNIYWV 440 (712)
Q Consensus 416 ~L~~vtGy~~eeL~eCve~L~~~~~ 440 (712)
.+..++|+++++|.+|++.|..++.
T Consensus 232 ~l~~~~~v~~~~l~~c~~~i~~l~~ 256 (271)
T 2w96_A 232 FLSRVIKCDPDCLRACQEQIEALLE 256 (271)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 5777899999999999999999764
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=3.2e-31 Score=270.67 Aligned_cols=188 Identities=16% Similarity=0.204 Sum_probs=161.4
Q ss_pred cCCcccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccc-
Q psy16012 238 QVKYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYV- 316 (712)
Q Consensus 238 eIt~~~R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~i- 316 (712)
++...+|..+++||.+||..|+|+++|+++|++|||||++... +.+.++|++|+||||||+|+|| .++.+.||+.+
T Consensus 35 ~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~--~~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~ 111 (258)
T 2i53_A 35 ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHS--FKQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTA 111 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSC--TTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC--hhhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHH
Confidence 3445689999999999999999999999999999999999876 7899999999999999999999 48889999854
Q ss_pred ----cCCCC------CHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHH
Q psy16012 317 ----TDGAC------SSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLL 386 (712)
Q Consensus 317 ----td~~y------T~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LL 386 (712)
+++.| ++++|++||+.||++|+|+++.+||+.||..|+..++...+ ....+...|++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~-----------~~~~~~~~A~~l~ 180 (258)
T 2i53_A 112 RSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKN-----------KIQKLVQMAWTFV 180 (258)
T ss_dssp HHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHH-----------HHHHHHHHHHHHH
T ss_pred HHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcc-----------hHHHHHHHHHHHH
Confidence 34445 48999999999999999999999999999999987764321 1135788999999
Q ss_pred HHHhcccccccCcHHHHHHHHHHHHcCh-----h----------HHHH-hhCCCHHhHHHHHHHHHHHH
Q psy16012 387 DLCHLDIRCLNYSYSVLATTAIYLVCSK-----E----------LACM-ISGLRLESLEDCIEWMNIYW 439 (712)
Q Consensus 387 dL~LlD~~fl~f~PSvIAAAAL~lA~~~-----e----------~L~~-vtGy~~eeL~eCve~L~~~~ 439 (712)
+.++.++.++.|+||.||||||++|... + .+.. ++|++.++|.+|++.|..++
T Consensus 181 ~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly 249 (258)
T 2i53_A 181 NDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLY 249 (258)
T ss_dssp HHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999731 1 1122 35999999999999988765
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.97 E-value=1e-30 Score=267.39 Aligned_cols=182 Identities=21% Similarity=0.214 Sum_probs=158.7
Q ss_pred cccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCcccccccc---
Q psy16012 241 YLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVT--- 317 (712)
Q Consensus 241 ~~~R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~it--- 317 (712)
..+|..+++||.+||..|+|+++|+++|++|||||++... +.+.++|++|+||||||+|+||. ++++.||+.++
T Consensus 28 ~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~--~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~ 104 (257)
T 2ivx_A 28 LSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHS--FTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHAC 104 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSC--TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCC--hhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999876 78999999999999999999998 88999997543
Q ss_pred -----------CCCCC--HHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHH
Q psy16012 318 -----------DGACS--SQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIR 384 (712)
Q Consensus 318 -----------d~~yT--~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~ 384 (712)
++.|+ +++|++||+.||++|+|+++.+||+.||..|++.++.. .++...|++
T Consensus 105 ~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~---------------~~~~~~A~~ 169 (257)
T 2ivx_A 105 LHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS---------------KDLAQTSYF 169 (257)
T ss_dssp HCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC---------------HHHHHHHHH
T ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC---------------cHHHHHHHH
Confidence 55666 99999999999999999999999999999999887632 346788999
Q ss_pred HHHHHhc-ccccccCcHHHHHHHHHHHHcCh-----------hHHHH--hhCCCHHhHHHHHHHHHHHHH
Q psy16012 385 LLDLCHL-DIRCLNYSYSVLATTAIYLVCSK-----------ELACM--ISGLRLESLEDCIEWMNIYWV 440 (712)
Q Consensus 385 LLdL~Ll-D~~fl~f~PSvIAAAAL~lA~~~-----------e~L~~--vtGy~~eeL~eCve~L~~~~~ 440 (712)
+++.++. +..|+.|+||.||||||++|... ..+.. ..|++.++|.+|++.|..++.
T Consensus 170 ~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~ 239 (257)
T 2ivx_A 170 MATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILE 239 (257)
T ss_dssp HHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999985 55589999999999999999731 11333 347999999999999998875
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=269.49 Aligned_cols=184 Identities=14% Similarity=0.154 Sum_probs=165.9
Q ss_pred ccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCcccccccc----
Q psy16012 242 LPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVT---- 317 (712)
Q Consensus 242 ~~R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~it---- 317 (712)
.+|..+++||.+||..++|..+|+++|++|||||++... +.+.++|+||+||||||+|+||..+|.+.|++.++
T Consensus 41 ~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s--~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~ 118 (285)
T 3rgf_B 41 KLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYS--LKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVL 118 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSC--TTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCC--chhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999876 88999999999999999999999888888887654
Q ss_pred ----------CCCCCHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHH
Q psy16012 318 ----------DGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLD 387 (712)
Q Consensus 318 ----------d~~yT~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLd 387 (712)
+..++.++|++||+.||++|+|+++.+||+.||..|+..++.. ..+...|+++++
T Consensus 119 k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~---------------~~~~~~A~~~l~ 183 (285)
T 3rgf_B 119 KTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE---------------DMLLPLAWRIVN 183 (285)
T ss_dssp HHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH---------------HHHHHHHHHHHH
T ss_pred cccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC---------------HHHHHHHHHHHH
Confidence 2247899999999999999999999999999999999988742 346789999999
Q ss_pred HHhcccccccCcHHHHHHHHHHHHcC-----hhHHHHhhCCCHHhHHHHHHHHHHHHHHH
Q psy16012 388 LCHLDIRCLNYSYSVLATTAIYLVCS-----KELACMISGLRLESLEDCIEWMNIYWVIL 442 (712)
Q Consensus 388 L~LlD~~fl~f~PSvIAAAAL~lA~~-----~e~L~~vtGy~~eeL~eCve~L~~~~~~I 442 (712)
.++.+..|+.|+||.||||||++|.. ...+....|+++++|.+|++.|..++..-
T Consensus 184 ~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~~~W~~~~~~~~~~l~~~~~~il~ly~~~ 243 (285)
T 3rgf_B 184 DTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQW 243 (285)
T ss_dssp HHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCCHHHHHTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHccChhhccCHHHHHHHHHHHHHHHcCCChhhHHHHHCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999972 24567778999999999999999998643
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.97 E-value=7.6e-30 Score=258.25 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCC-cchhhHHHHHHHHHHHhccCCCCCccccccccCC---
Q psy16012 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPK-QQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDG--- 319 (712)
Q Consensus 244 R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k-~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~--- 319 (712)
|..+++||.+||..++|+.+|+++|++|||||++... +.+ .++|+||+||||||+|+||. ++.+.||+.++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~--~~~~~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKN--EEKGFSLEALVATCIYLSCKVEEC-PVHIRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC--SCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc--cccccCHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999865 778 89999999999999999994 7789999988865
Q ss_pred ---CCCHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccccc
Q psy16012 320 ---ACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCL 396 (712)
Q Consensus 320 ---~yT~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl 396 (712)
.+++++|++||+.||++|+|++.++||+.||..|+..++. ..++...|+++++.++.+..++
T Consensus 105 ~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~---------------~~~~~~~A~~~l~~s~~~~~~l 169 (235)
T 1zp2_A 105 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGII---------------NQKQLEFAWSIVNDSYASSLCL 169 (235)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSS---------------CHHHHHHHHHHHHHHTTTTGGG
T ss_pred chhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCC---------------CHHHHHHHHHHHHHHHcCCchh
Confidence 6899999999999999999999999999999999985432 1346788999999999999999
Q ss_pred cCcHHHHHHHHHHHHcCh------hHHHHhhCCCHHhHHHHHHHHHHHHH
Q psy16012 397 NYSYSVLATTAIYLVCSK------ELACMISGLRLESLEDCIEWMNIYWV 440 (712)
Q Consensus 397 ~f~PSvIAAAAL~lA~~~------e~L~~vtGy~~eeL~eCve~L~~~~~ 440 (712)
.|+||.||||||++|... .....+.|++.++|.+|++.|..++.
T Consensus 170 ~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ly~ 219 (235)
T 1zp2_A 170 MAHPHQLAYAALLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYY 219 (235)
T ss_dssp TSCHHHHHHHHHHHHHTSCTTHHHHHHHHCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHhcCCCCCCCcchhhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999841 11223348999999999999999874
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.96 E-value=8.2e-30 Score=274.31 Aligned_cols=181 Identities=22% Similarity=0.212 Sum_probs=156.5
Q ss_pred cccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCcccccccc---
Q psy16012 241 YLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVT--- 317 (712)
Q Consensus 241 ~~~R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~it--- 317 (712)
..+|.++++||.+|+..|+|+.+|+++||+|||||++... +.+.++|+||+||||||+|+||. ++.+.||+.++
T Consensus 35 ~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~s--v~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~ 111 (358)
T 2pk2_A 35 LSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQS--FTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTC 111 (358)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSC--TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999876 78999999999999999999999 88899998654
Q ss_pred -----------CCCCC--HHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHH
Q psy16012 318 -----------DGACS--SQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIR 384 (712)
Q Consensus 318 -----------d~~yT--~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~ 384 (712)
++.|+ +++|++||+.||++|+|+|.++||+.||..|++.+... .++...|++
T Consensus 112 ~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~---------------~~l~~~A~~ 176 (358)
T 2pk2_A 112 LHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS---------------KDLAQTSYF 176 (358)
T ss_dssp HCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC---------------HHHHHHHHH
T ss_pred hccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC---------------HHHHHHHHH
Confidence 44565 89999999999999999999999999999999887532 346788999
Q ss_pred HHHHHhc-ccccccCcHHHHHHHHHHHHcCh-----------hHHHHh--hCCCHHhHHHHHHHHHHHH
Q psy16012 385 LLDLCHL-DIRCLNYSYSVLATTAIYLVCSK-----------ELACMI--SGLRLESLEDCIEWMNIYW 439 (712)
Q Consensus 385 LLdL~Ll-D~~fl~f~PSvIAAAAL~lA~~~-----------e~L~~v--tGy~~eeL~eCve~L~~~~ 439 (712)
+++.++. +..++.|+||.||||||++|... ..+... .+++.++|.+|++.|..++
T Consensus 177 ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 177 MATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQIL 245 (358)
T ss_dssp HHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHH
Confidence 9999986 44589999999999999999721 112222 4789999999999998876
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.95 E-value=8.7e-28 Score=255.07 Aligned_cols=188 Identities=20% Similarity=0.175 Sum_probs=159.3
Q ss_pred ccHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCC
Q psy16012 242 LPRTVLLDWLSEVCEVYT--LHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDG 319 (712)
Q Consensus 242 ~~R~iLVDWL~EV~~~yk--Ls~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~ 319 (712)
.+|...++||.+||..|+ |+.+|+++|++|||||++... +.+.++|+||+||||||+|+||. ++.+.+|++.+.+
T Consensus 55 ~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s--~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~ 131 (323)
T 1jkw_A 55 TLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNS--VMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRE 131 (323)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSC--TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCC--hhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhcc
Confidence 468899999999999999 999999999999999999876 77999999999999999999998 5789999887654
Q ss_pred -----CCCHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccc
Q psy16012 320 -----ACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIR 394 (712)
Q Consensus 320 -----~yT~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~ 394 (712)
.|+.++|++||+.||++|+|++.++||+.||..|+..+....... . ....+...|+++++.++.+..
T Consensus 132 ~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~---~-----~~~~l~~~A~~~l~~sl~t~~ 203 (323)
T 1jkw_A 132 SPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPIL---E-----NPEILRKTADDFLNRIALTDA 203 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTC---C-----CHHHHHHHHHHHHHHHTTSTH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccC---C-----CHHHHHHHHHHHHHHHHhccH
Confidence 367899999999999999999999999999999997763210000 0 113467889999999999999
Q ss_pred cccCcHHHHHHHHHHHHcC---------hhHHHHh--hCCCHHhHHHHHHHHHHHHH
Q psy16012 395 CLNYSYSVLATTAIYLVCS---------KELACMI--SGLRLESLEDCIEWMNIYWV 440 (712)
Q Consensus 395 fl~f~PSvIAAAAL~lA~~---------~e~L~~v--tGy~~eeL~eCve~L~~~~~ 440 (712)
++.|+||+||||||++|.. ...+..+ ++++.++|.+|++.|..++.
T Consensus 204 ~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 204 YLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVK 260 (323)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999972 2222222 67799999999999988775
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.91 E-value=5.1e-23 Score=204.10 Aligned_cols=179 Identities=15% Similarity=0.115 Sum_probs=162.8
Q ss_pred ccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCC
Q psy16012 242 LPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGAC 321 (712)
Q Consensus 242 ~~R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~y 321 (712)
+......+||.++|..++|+.+|..+|+.||+||+.... +...+.+++|+||||||+|+||. |..+.|++.+++ +
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~--~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~ 77 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKS--LKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--I 77 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTC--STTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--S
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--C
Confidence 345688999999999999999999999999999999865 77899999999999999999997 789999998887 8
Q ss_pred CHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccccccCcHH
Q psy16012 322 SSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYS 401 (712)
Q Consensus 322 T~~EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~f~PS 401 (712)
+..+|.++|+.||+.|+|++..++|+.|+..|...++.. .++...|+++++.++.+..+++|+|+
T Consensus 78 ~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~---------------~~~~~~A~~i~~~~~~~~l~~g~~P~ 142 (207)
T 1c9b_A 78 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLP---------------KQVQMAATHIARKAVELDLVPGRSPI 142 (207)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCC---------------HHHHHHHHHHHHHHHHTTCSTTCCHH
T ss_pred CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHHHcCccCCCChH
Confidence 999999999999999999999999999999999988753 23677899999999998889999999
Q ss_pred HHHHHHHHHHc-------ChhHHHHhhCCCHHhHHHHHHHHHHHHH
Q psy16012 402 VLATTAIYLVC-------SKELACMISGLRLESLEDCIEWMNIYWV 440 (712)
Q Consensus 402 vIAAAAL~lA~-------~~e~L~~vtGy~~eeL~eCve~L~~~~~ 440 (712)
.|||||||+|+ +...+..++|++...|.+|++.|.+...
T Consensus 143 ~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 143 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99999999997 3567889999999999999999988654
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.82 E-value=5.2e-19 Score=174.22 Aligned_cols=177 Identities=12% Similarity=0.100 Sum_probs=160.9
Q ss_pred cHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCC
Q psy16012 243 PRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACS 322 (712)
Q Consensus 243 ~R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT 322 (712)
......++|.++|..++|+..+...|+.||+||+... .+.....+.++++|||+|+|.|+ .|..+.|++.+++ ++
T Consensus 8 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~--~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~ 82 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKG--LIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VD 82 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTT--TTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--CcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CC
Confidence 4568899999999999999999999999999999874 47778999999999999999998 5789999988876 89
Q ss_pred HHHHHHHHHHHHHHcCccccC--CChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccccccCcH
Q psy16012 323 SQDILSTEMNILAVLEWNITP--VTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSY 400 (712)
Q Consensus 323 ~~EIl~mE~~ILktL~WdL~~--pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~f~P 400 (712)
..+|.++|+.|++.|+|++.+ ++|..|+..|...++... ++...|+++++.+..+..+.+++|
T Consensus 83 ~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~---------------~v~~~A~~i~~~~~~~~~~~gr~P 147 (200)
T 1ais_B 83 KKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE---------------KVRRRAIEILDEAYKRGLTSGKSP 147 (200)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH---------------HHHHHHHHHHHHHHHTTCCTTSCH
T ss_pred HHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH---------------HHHHHHHHHHHHHHHcCcccCCCH
Confidence 999999999999999999999 999999999999987543 367889999999999988999999
Q ss_pred HHHHHHHHHHHc-------ChhHHHHhhCCCHHhHHHHHHHHHHHH
Q psy16012 401 SVLATTAIYLVC-------SKELACMISGLRLESLEDCIEWMNIYW 439 (712)
Q Consensus 401 SvIAAAAL~lA~-------~~e~L~~vtGy~~eeL~eCve~L~~~~ 439 (712)
+.|||||||+|+ +...+..++|++...|..|++.|.+..
T Consensus 148 ~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 148 AGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 999999999997 457889999999999999999988754
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.57 E-value=9.1e-16 Score=164.25 Aligned_cols=177 Identities=10% Similarity=0.056 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCH
Q psy16012 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSS 323 (712)
Q Consensus 244 R~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~ 323 (712)
-......|.++|..++|+..+.-.|..||.||+.... +.....+.++++|||||+|.|+. |..+.|++.+++ ++.
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~--~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~ 200 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKT--LKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKT 200 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCS--SCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--ccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCH
Confidence 4577899999999999999999999999999998854 77889999999999999999887 788999988886 889
Q ss_pred HHHHHHHHHHHHHcC------------ccccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhc
Q psy16012 324 QDILSTEMNILAVLE------------WNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHL 391 (712)
Q Consensus 324 ~EIl~mE~~ILktL~------------WdL~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~Ll 391 (712)
.+|.++++.|++.|+ +.+.+++|..|+..|+..++... ++...|+++++.+..
T Consensus 201 keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~---------------~v~~~A~~i~~~~~~ 265 (345)
T 3k7a_M 201 KEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM---------------QVTTSAEYTAKKCKE 265 (345)
T ss_dssp HHHHHHHHHHHHHHTCC---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH---------------HHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999887643 255779999999999
Q ss_pred ccccccCcHHHHHHHHHHHHc-------ChhHHHHhhCCCHHhHHHHHHHHHHHHH
Q psy16012 392 DIRCLNYSYSVLATTAIYLVC-------SKELACMISGLRLESLEDCIEWMNIYWV 440 (712)
Q Consensus 392 D~~fl~f~PSvIAAAAL~lA~-------~~e~L~~vtGy~~eeL~eCve~L~~~~~ 440 (712)
+.-+..++|+.|||||||+|. +...+..+.|++...|..+++.|.++..
T Consensus 266 ~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 266 IKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp --------------------------------------------------------
T ss_pred hchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 888899999999999999997 3466778889999999999988888764
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.03 E-value=2.9e-10 Score=122.02 Aligned_cols=176 Identities=9% Similarity=0.048 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHH
Q psy16012 245 TVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQ 324 (712)
Q Consensus 245 ~iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~ 324 (712)
......|.++|..++|+..+.-.|..+|.+++... .+.......++++|||+|+|.++. |..+.|++.++. .+..
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~--~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~~~--v~~k 201 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEK--TLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTK 201 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--TTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT--CCTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhC--CCHH
Confidence 47788999999999999999999999999999864 476778999999999999999874 678888887775 6899
Q ss_pred HHHHHHHHHHHHcCcc------------ccCCChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcc
Q psy16012 325 DILSTEMNILAVLEWN------------ITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLD 392 (712)
Q Consensus 325 EIl~mE~~ILktL~Wd------------L~~pTP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD 392 (712)
+|-+..+.|++.|+.. +.+.+|.+|+..|...++.... +...|..+++.+..+
T Consensus 202 eigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~---------------v~~~A~~i~~~~~~~ 266 (345)
T 4bbr_M 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ---------------VTTSAEYTAKKCKEI 266 (345)
T ss_dssp HHHHHHHHHHHCC-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH---------------HHHHHHHHHHHHHhc
Confidence 9999999999999974 7788999999999988876432 456678888888777
Q ss_pred cccccCcHHHHHHHHHHHHcC-------hhHHHHhhCCCHHhHHHHHHHHHHHHH
Q psy16012 393 IRCLNYSYSVLATTAIYLVCS-------KELACMISGLRLESLEDCIEWMNIYWV 440 (712)
Q Consensus 393 ~~fl~f~PSvIAAAAL~lA~~-------~e~L~~vtGy~~eeL~eCve~L~~~~~ 440 (712)
.-....+|+.|||||||+|.. ...+..+.|++..-|...++.|.+...
T Consensus 267 ~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~ 321 (345)
T 4bbr_M 267 KEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp -------------------------------------------------------
T ss_pred ccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 667899999999999999973 244566667776666666666655544
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.01 E-value=1.8e-05 Score=83.09 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCc-cccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHH
Q psy16012 246 VLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNA-NIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQ 324 (712)
Q Consensus 246 iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~-~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~ 324 (712)
-+-+|+..+...-+++.+++-.|+.|+||+..... ..+......-+-++||.+|+|+-+.....-..++.+ +.++.+
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV--gGisl~ 153 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV--GGVRCH 153 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH--HTSCHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc--cCcCHH
Confidence 46789999999999999999999999999987533 224567888899999999999977666666667766 457999
Q ss_pred HHHHHHHHHHHHcCccccCCChhHHHHHHHHH
Q psy16012 325 DILSTEMNILAVLEWNITPVTAHYWLNVFLQV 356 (712)
Q Consensus 325 EIl~mE~~ILktL~WdL~~pTP~~FL~~fL~~ 356 (712)
||-.||+..|..|+|+|.+. .-.|..+|+..
T Consensus 154 ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 99999999999999999765 44566666544
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=94.80 E-value=0.086 Score=51.24 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHHHHH
Q psy16012 248 LDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDIL 327 (712)
Q Consensus 248 VDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~EIl 327 (712)
.++|...+..++++.++...|..++.+..... +.......-++++||++|+++... +....+++.+++ ++..+|.
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~--~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~ 183 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRG--LTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVR 183 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTT--CCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--cccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHH
Confidence 57888899999999999999999999998753 355788899999999999998664 446677777665 6889999
Q ss_pred HHHHHHHHHcCcccc
Q psy16012 328 STEMNILAVLEWNIT 342 (712)
Q Consensus 328 ~mE~~ILktL~WdL~ 342 (712)
+.=+.+.+.|+..+.
T Consensus 184 ~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 184 NRYKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999986653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=88.02 E-value=1.8 Score=42.20 Aligned_cols=76 Identities=11% Similarity=0.222 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHHHHcC-------hhHHHH
Q psy16012 347 HYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCS-------KELACM 419 (712)
Q Consensus 347 ~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~f~PSvIAAAAL~lA~~-------~e~L~~ 419 (712)
..+++.+...++.. +.+...|..+.+..+....+-.+++-.||+||||+|+. ...+..
T Consensus 9 ~~~I~~~~~~L~L~---------------~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~ 73 (207)
T 1c9b_A 9 FKEITTMADRINLP---------------RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICA 73 (207)
T ss_dssp HHHHHHHHHHTTCC---------------HHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHcCCC---------------HHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 45666666555543 34677788888888887778899999999999999984 245667
Q ss_pred hhCCCHHhHHHHHHHHHH
Q psy16012 420 ISGLRLESLEDCIEWMNI 437 (712)
Q Consensus 420 vtGy~~eeL~eCve~L~~ 437 (712)
+++++..++..+.+.|.+
T Consensus 74 ~~~~~~~~i~~~~~~ll~ 91 (207)
T 1c9b_A 74 VSRISKKEIGRCFKLILK 91 (207)
T ss_dssp TSSSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888898888877665554
No 22
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=83.15 E-value=1 Score=46.09 Aligned_cols=194 Identities=12% Similarity=0.087 Sum_probs=98.0
Q ss_pred cCChhHHHHHHHhcccccccccCccccccCCCCCCCCCCchh-hhh-----hccchhhh---hhHhhhhhhccccccccc
Q psy16012 116 WANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVF-WII-----TGLSLKMF---MMYEYRLYCVNNYFLFTI 186 (712)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-----~g~~~~~~---~~y~~~~~C~~~~~~~~~ 186 (712)
+.-.+|+|+.|..++. .+..++++++.+ ++.++||.-+. |.+ ||+...+. ..|=+++++..+..-
T Consensus 4 ~eY~~di~~~l~~~E~--~~~~~~~y~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~--- 77 (269)
T 2b9r_A 4 SEYVKDIYAYLRQLEA--AQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPK--- 77 (269)
T ss_dssp ---CCTTTTTHHHHHH--TTCCCTTTTSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCG---
T ss_pred HHHHHHHHHHHHHHHH--hhCCCcccccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcH---
Confidence 3456789999999988 677889999998 99999998432 222 22222221 122333333332110
Q ss_pred cCCCcccccccchhHHHHHHHHHhhhcCChH-HHHH-------------hhhhhccccccchhhccCCcccHHHHHHHHH
Q psy16012 187 FTPSNIVLPILTLNKVTRQVSLAVESSVPST-FLVT-------------MQKEGQQKFGLEVEALQVKYLPRTVLLDWLS 252 (712)
Q Consensus 187 ~~~s~~v~P~l~~nr~l~~Ls~~ee~y~ps~-yl~~-------------~q~E~q~~~~~~~~q~eIt~~~R~iLVDWL~ 252 (712)
-...+..=-++.-=...+|.+.|.. .+.. ++..-...+++.+. .. .-.+||.
T Consensus 78 ------~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~--~~------tp~~fl~ 143 (269)
T 2b9r_A 78 ------KMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLG--RP------LPLHFLR 143 (269)
T ss_dssp ------GGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCC--CC------CHHHHHH
T ss_pred ------HHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccC--CC------CHHHHHH
Confidence 0000000001111112233333321 1111 11111111111110 01 1246677
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHHHHHHHHHH
Q psy16012 253 EVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMN 332 (712)
Q Consensus 253 EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~EIl~mE~~ 332 (712)
..+...+++.++..+|..+++.-+.... +-......||++|+++|.++-+.. +-..++..++ .++.++|...=..
T Consensus 144 ~~~~~~~~~~~~~~~a~~l~e~sl~~~~--~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~t--g~~~~~l~~~~~~ 218 (269)
T 2b9r_A 144 RASKIGEVDVEQHTLAKYLMELTMLDYD--MVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYL--SYTEESLLPVMQH 218 (269)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHGGGCGG--GSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHS--CCCSSTTTTHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhh--hhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHH--CCCHHHHHHHHHH
Confidence 7777777888888888888887765433 336677889999999999986543 2223333333 2455555444333
Q ss_pred HH
Q psy16012 333 IL 334 (712)
Q Consensus 333 IL 334 (712)
|+
T Consensus 219 l~ 220 (269)
T 2b9r_A 219 LA 220 (269)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 23
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=82.00 E-value=6.8 Score=39.29 Aligned_cols=89 Identities=9% Similarity=0.039 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCc---cccccccCCCCCHH
Q psy16012 248 LDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKV---SDYAYVTDGACSSQ 324 (712)
Q Consensus 248 VDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i---~dL~~itd~~yT~~ 324 (712)
.++|...+..++.+.++..+|..++..-+.... ..-......||++|+++|+++-....|.. ......-+..++.+
T Consensus 147 ~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~-~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~ 225 (257)
T 2ivx_A 147 HTDVVKCTQLVRASKDLAQTSYFMATNSLHLTT-FCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLE 225 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC-GGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccc-HHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHH
Confidence 346666677778888888888888754432111 12256778999999999999866543321 12222223457999
Q ss_pred HHHHHHHHHHHHc
Q psy16012 325 DILSTEMNILAVL 337 (712)
Q Consensus 325 EIl~mE~~ILktL 337 (712)
+|...-..|++.+
T Consensus 226 ~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 226 LLDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888764
No 24
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=76.22 E-value=10 Score=37.87 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCch----hHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCcc------cccccc
Q psy16012 248 LDWLSEVCEVYTLHR----ETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVS------DYAYVT 317 (712)
Q Consensus 248 VDWL~EV~~~ykLs~----ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~------dL~~it 317 (712)
.++|...+..++... +...+|..+++.-+.... .-......||++|+++|+++.....+... .....-
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~--~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTL--SLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTG--GGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCc--hhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 356666667777665 577888888888765532 33677789999999999998654332211 111111
Q ss_pred CCCCCHHHHHHHHHHHHHHcC
Q psy16012 318 DGACSSQDILSTEMNILAVLE 338 (712)
Q Consensus 318 d~~yT~~EIl~mE~~ILktL~ 338 (712)
...++.++|...-..|++...
T Consensus 230 ~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 VQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SSSCCHHHHHHHHHHHHTTTS
T ss_pred ccCCCHHHHHHHHHHHHHHHh
Confidence 235899999998888887654
No 25
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=76.14 E-value=8 Score=41.22 Aligned_cols=80 Identities=10% Similarity=0.116 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHHHHcC-------hhHH
Q psy16012 345 TAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCS-------KELA 417 (712)
Q Consensus 345 TP~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~f~PSvIAAAAL~lA~~-------~e~L 417 (712)
..+..+..+...++.. +.+...|..+...+...-.+-..+...|||||||+|+. ...+
T Consensus 128 ~a~~~I~~~~~~L~Lp---------------~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI 192 (345)
T 4bbr_M 128 AAFAKITMLCDAAELP---------------KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEI 192 (345)
T ss_dssp HHHHHHHHHHHHTTCC---------------HHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHH
T ss_pred HHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHH
Confidence 3455666666666543 34677888888888776666788899999999999994 2457
Q ss_pred HHhhCCCHHhHHHHHHHHHHHH
Q psy16012 418 CMISGLRLESLEDCIEWMNIYW 439 (712)
Q Consensus 418 ~~vtGy~~eeL~eCve~L~~~~ 439 (712)
..+++++..+|..+++.|.+.+
T Consensus 193 ~~~~~v~~keigr~~k~l~~~L 214 (345)
T 4bbr_M 193 QSLIHVKTKEFGKTLNIMKNIL 214 (345)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHh
Confidence 7788999999999998887754
No 26
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=74.83 E-value=4.6 Score=40.81 Aligned_cols=189 Identities=13% Similarity=0.079 Sum_probs=98.0
Q ss_pred ChhHHHHHHHhcccccccccCccccccCCCCCCCCCCch-hhhh-----hccchhhh---hhHhhhhhhccccccccccC
Q psy16012 118 NEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPV-FWII-----TGLSLKMF---MMYEYRLYCVNNYFLFTIFT 188 (712)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~-----~g~~~~~~---~~y~~~~~C~~~~~~~~~~~ 188 (712)
-.+|+++.|...+. .+..++++++++|+|.++||.-+ =|.+ ||+...+. ..|=+++.+..+..
T Consensus 6 Y~~di~~~l~~~E~--~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~------ 77 (260)
T 2cch_B 6 YHEDIHTYLREMEV--KCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVL------ 77 (260)
T ss_dssp THHHHHHHHHHHHH--HTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCC------
T ss_pred HHHHHHHHHHHHHh--hcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCC------
Confidence 36799999999888 66677899999999999999843 2322 23222222 22334444443211
Q ss_pred CCcccccccchhHHHHHHH--------HHhhhcCChH-HHHHh-------------hhhhccccccchhhccCCcccHHH
Q psy16012 189 PSNIVLPILTLNKVTRQVS--------LAVESSVPST-FLVTM-------------QKEGQQKFGLEVEALQVKYLPRTV 246 (712)
Q Consensus 189 ~s~~v~P~l~~nr~l~~Ls--------~~ee~y~ps~-yl~~~-------------q~E~q~~~~~~~~q~eIt~~~R~i 246 (712)
. +.++.+. ..+|.+.|.. .+..+ +..-...+++.+ .. ..
T Consensus 78 ----------~-~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l-----~~---~t 138 (260)
T 2cch_B 78 ----------R-GKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDL-----AA---PT 138 (260)
T ss_dssp ----------H-HHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCC-----CC---CC
T ss_pred ----------H-HHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCcc-----CC---CC
Confidence 0 1111111 2233333322 11111 111111111110 00 12
Q ss_pred HHHHHHHHHHHhcCch-hHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHHH
Q psy16012 247 LLDWLSEVCEVYTLHR-ETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQD 325 (712)
Q Consensus 247 LVDWL~EV~~~ykLs~-ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~E 325 (712)
-.+||...+..++++. .+..+|..+++.-+... ..+-......||++|+++|++.-+. +.-...+..++ .++.++
T Consensus 139 p~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~-~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~--g~~~~~ 214 (260)
T 2cch_B 139 VNQFLTQYFLHQQPANCKVESLAMFLGELSLIDA-DPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKT--GYTLES 214 (260)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCH-HHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHH--CCCHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhH-HHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHh--CcCHHH
Confidence 2456666666666554 55666666666533221 1022455678999999999997554 22233344444 368888
Q ss_pred HHHHHHHHHHHc
Q psy16012 326 ILSTEMNILAVL 337 (712)
Q Consensus 326 Il~mE~~ILktL 337 (712)
|...=..|++.+
T Consensus 215 i~~~~~~l~~~~ 226 (260)
T 2cch_B 215 LKPCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887766666543
No 27
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=74.50 E-value=5.6 Score=42.53 Aligned_cols=88 Identities=8% Similarity=0.057 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCc---cccccccCCCCCHHH
Q psy16012 249 DWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKV---SDYAYVTDGACSSQD 325 (712)
Q Consensus 249 DWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i---~dL~~itd~~yT~~E 325 (712)
++|......++...++..+|..++..-+... ...-...-..||++||++|+++-....|.- ......-+..++.++
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t-~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~ 233 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLT-TFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLEL 233 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTS-CGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHH
Confidence 4566666777788888888988885544211 112256778999999999999866543321 122222234578999
Q ss_pred HHHHHHHHHHHc
Q psy16012 326 ILSTEMNILAVL 337 (712)
Q Consensus 326 Il~mE~~ILktL 337 (712)
|...-..|++.+
T Consensus 234 l~~i~~~il~~y 245 (358)
T 2pk2_A 234 LDELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999888888765
No 28
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=72.32 E-value=3.1 Score=44.21 Aligned_cols=79 Identities=9% Similarity=0.122 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHhcccccccCcHHHHHHHHHHHHcCh-------hHHHH
Q psy16012 347 HYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSK-------ELACM 419 (712)
Q Consensus 347 ~~FL~~fL~~l~~~~~~~~~~~~l~pq~s~~l~~~A~~LLdL~LlD~~fl~f~PSvIAAAAL~lA~~~-------e~L~~ 419 (712)
+.+++.+...++.. +.+...|..+...+.....+-..+...|||||||+|+.. ..+..
T Consensus 130 ~~~I~~~~~~L~Lp---------------~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~ 194 (345)
T 3k7a_M 130 FAKITMLCDAAELP---------------KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQS 194 (345)
T ss_dssp HHHHHHHHHHTTCC---------------HHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHH
T ss_pred HHHHHHHHHHcCCC---------------HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 45666666666543 336677888888887766677889999999999999952 45777
Q ss_pred hhCCCHHhHHHHHHHHHHHHH
Q psy16012 420 ISGLRLESLEDCIEWMNIYWV 440 (712)
Q Consensus 420 vtGy~~eeL~eCve~L~~~~~ 440 (712)
+++++..+|..+.+.|.+.+.
T Consensus 195 ~~~v~~keIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 195 LIHVKTKEFGKTLNIMKNILR 215 (345)
T ss_dssp SSSCCSHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHh
Confidence 889999999999988887653
No 29
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=71.00 E-value=7.3 Score=40.07 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHHHHHH
Q psy16012 249 DWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILS 328 (712)
Q Consensus 249 DWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~EIl~ 328 (712)
++|...+..+++..++..+|..++..-+... ..-...-..||++|+++|+++..... .... ..-.++.++|..
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~--~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~--~~~~~~~~~l~~ 231 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTD--LCLLYPPFMIALACLHVACVVQQKDA---RQWF--AELSVDMEKILE 231 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--HHHHSCHHHHHHHHHHHHHHHTTCCC---HHHH--HTSCSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccC--hhhccCHHHHHHHHHHHHHHHcCCCh---hhHH--HHHCCCHHHHHH
Confidence 4666667777788888899999888766542 23356778899999999999865432 1221 122478888888
Q ss_pred HHHHHHHH
Q psy16012 329 TEMNILAV 336 (712)
Q Consensus 329 mE~~ILkt 336 (712)
+-..|+..
T Consensus 232 ~~~~il~l 239 (285)
T 3rgf_B 232 IIRVILKL 239 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777765
No 30
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=68.05 E-value=20 Score=35.48 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhccccccc-CcHHHHHHHHHHHHcC
Q psy16012 376 RTLYTQCIRLLDLCHLDIRCLN-YSYSVLATTAIYLVCS 413 (712)
Q Consensus 376 ~~l~~~A~~LLdL~LlD~~fl~-f~PSvIAAAAL~lA~~ 413 (712)
+.+...|..+++..+....+.. +.+-.||+|||++|++
T Consensus 46 ~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K 84 (235)
T 1zp2_A 46 QRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCK 84 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhc
Confidence 4467778888888888888888 9999999999999984
No 31
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=51.06 E-value=35 Score=34.15 Aligned_cols=207 Identities=13% Similarity=0.084 Sum_probs=107.3
Q ss_pred CCCCCCCCCCccCChhHHHHHHHhcccccccccCccccc-cCCCCCCCCCCch-hhhhh-----ccchhhh---hhHhhh
Q psy16012 105 PPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLD-RHPSIVPRMRTPV-FWIIT-----GLSLKMF---MMYEYR 174 (712)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~-~~~~~-----g~~~~~~---~~y~~~ 174 (712)
+.+..+-|.+-|. +|+|. |..++. .+..++++++ .+|++.++||.-+ =|.+. |+...+. ..|=++
T Consensus 8 ~~~~~~dp~l~~~--~~i~~-l~~~E~--~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DR 82 (254)
T 2f2c_A 8 LNRAKIDSTTMKD--PRVLN-NLKLRE--LLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDR 82 (254)
T ss_dssp CCBCCCCHHHHTC--HHHHH-HHHHHH--TTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCCCCCCcccccH--HHHHH-HHHHHH--hhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4456677878776 99999 999998 7778889986 7899999999842 23332 3322222 123334
Q ss_pred hhhccccccccccCCCcccccccchhHHHHHHHHHhhhcCChH-HH-------------HHhhhhhccccccchhhccCC
Q psy16012 175 LYCVNNYFLFTIFTPSNIVLPILTLNKVTRQVSLAVESSVPST-FL-------------VTMQKEGQQKFGLEVEALQVK 240 (712)
Q Consensus 175 ~~C~~~~~~~~~~~~s~~v~P~l~~nr~l~~Ls~~ee~y~ps~-yl-------------~~~q~E~q~~~~~~~~q~eIt 240 (712)
+.+.....- . ...+..=-++.-=...+|.+.|.. .+ ..|+..-...+++.+. ..
T Consensus 83 fls~~~v~~------~---~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~--~~- 150 (254)
T 2f2c_A 83 YLCKKQGTK------K---TLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTE--AV- 150 (254)
T ss_dssp HTTTSCCCT------T---THHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCC--CC-
T ss_pred HHccCCcCH------H---HccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCC--CC-
Confidence 433322110 0 000000011111112233333321 11 1111111111111111 11
Q ss_pred cccHHHHHHHHHHHHHHhcCchhHH----HHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCC----ccc
Q psy16012 241 YLPRTVLLDWLSEVCEVYTLHRETF----YLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPK----VSD 312 (712)
Q Consensus 241 ~~~R~iLVDWL~EV~~~ykLs~ET~----~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~----i~d 312 (712)
...+|+......++++.++. .+|..+++.-+.... +-......||++|+++|.+.....+.. ...
T Consensus 151 -----tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~--~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~ 223 (254)
T 2f2c_A 151 -----LATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPN--IALLSPGLICAGGLLTTIETDNTNCRPWTCYLED 223 (254)
T ss_dssp -----CGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGG--GTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHH
T ss_pred -----CHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcc--hhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Confidence 11345555666667766653 346666765443322 336677899999999999985222211 334
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHc
Q psy16012 313 YAYVTDGACSSQDILSTEMNILAVL 337 (712)
Q Consensus 313 L~~itd~~yT~~EIl~mE~~ILktL 337 (712)
+..++ .++.++|...=..|.+.+
T Consensus 224 l~~~t--g~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 224 LSSIL--NFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp HHHHH--TCCHHHHHHHHHHHHHHH
T ss_pred HHHHH--CcCHHHHHHHHHHHHHHH
Confidence 44444 368888888766666543
No 32
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=46.48 E-value=37 Score=33.97 Aligned_cols=206 Identities=16% Similarity=0.069 Sum_probs=100.4
Q ss_pred CCCCCCCCCCccCChhHHHHHHHhcccccccccCccccc-cCCCCCCCCCCch-hhhh-----hccchhhh---hhHhhh
Q psy16012 105 PPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLD-RHPSIVPRMRTPV-FWII-----TGLSLKMF---MMYEYR 174 (712)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~-~~~~-----~g~~~~~~---~~y~~~ 174 (712)
+.+..+-|.+.|. +|+| .|..++. .+..++++++ .++++.++||.-+ -|.+ ||+...+. ..|=++
T Consensus 7 ~~~~~~dp~~~~~--~~i~-~l~~~E~--~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DR 81 (257)
T 1g3n_C 7 PPSGLLDPTLCED--RIFY-NILEIEP--RFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDR 81 (257)
T ss_dssp ---------CHHH--HHHH-HHHHHGG--GGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CccCCCCCccccH--HHHH-HHHHHHH--HhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4566778889885 9999 9999998 6777888874 7899999999843 2333 33332222 123334
Q ss_pred hhhccccccccccCCCcccccccchhHHHHHHHHHhhhcCChH-HHHH-------------hhhhhccccccchhhccCC
Q psy16012 175 LYCVNNYFLFTIFTPSNIVLPILTLNKVTRQVSLAVESSVPST-FLVT-------------MQKEGQQKFGLEVEALQVK 240 (712)
Q Consensus 175 ~~C~~~~~~~~~~~~s~~v~P~l~~nr~l~~Ls~~ee~y~ps~-yl~~-------------~q~E~q~~~~~~~~q~eIt 240 (712)
+.+.....-. ...+..=-++.-=...+|.+.|.. .+.. |+..-...+++.+ .
T Consensus 82 fls~~~v~~~---------~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l-----~ 147 (257)
T 1g3n_C 82 LLLIKQVSKE---------HFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRT-----E 147 (257)
T ss_dssp HTTTCCCCHH---------HHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCC-----C
T ss_pred HHccCCCCHH---------HHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcC-----C
Confidence 4433211100 000000001110112234344422 1111 1111111111111 1
Q ss_pred cccHHHHHHHHHHHHHHhcCchhH----HHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCC----C-Ccc
Q psy16012 241 YLPRTVLLDWLSEVCEVYTLHRET----FYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYP----P-KVS 311 (712)
Q Consensus 241 ~~~R~iLVDWL~EV~~~ykLs~ET----~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~p----P-~i~ 311 (712)
. ..-.+|+...+..++++.++ ..+|..+++.-+.... +-......||++|+++|.+.....+ + -..
T Consensus 148 ~---~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~--~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~ 222 (257)
T 1g3n_C 148 A---VLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPL--TGSLPASIISAAGCALLVPANVIPQDTHSGGVVP 222 (257)
T ss_dssp C---CCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTT--GGGSCHHHHHHHHHHHHCCGGGSCC-----CHHH
T ss_pred C---CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcc--hhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHH
Confidence 0 12355666666667776655 2446667765554332 3356778899999999998865421 1 122
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHH
Q psy16012 312 DYAYVTDGACSSQDILSTEMNILAV 336 (712)
Q Consensus 312 dL~~itd~~yT~~EIl~mE~~ILkt 336 (712)
.+..++ .++.++|...=..|.+.
T Consensus 223 ~l~~~t--~~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 223 QLASIL--GCDVSVLQAAVEQILTS 245 (257)
T ss_dssp HHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHH--CcCHHHHHHHHHHHHHH
Confidence 333333 46788887766666554
No 33
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=41.85 E-value=62 Score=33.79 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHh---cCchhHHHHHHHHHHHhhccCccccCCcchhhHHHHHHHHHHHhccCCCCC-ccccccccCCCC
Q psy16012 246 VLLDWLSEVCEVY---TLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPK-VSDYAYVTDGAC 321 (712)
Q Consensus 246 iLVDWL~EV~~~y---kLs~ET~~LAV~yfDRFLS~~~~iv~k~~LQLIGiTCLfIASKvEEi~pP~-i~dL~~itd~~y 321 (712)
-+..++..+...+ +...+...+|..++..-+.... .-......||++|+++|++......+. ..++....+..+
T Consensus 166 ~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~--~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~ 243 (323)
T 1jkw_A 166 PFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDA--YLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRT 243 (323)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTH--HHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccH--HHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccc
Confidence 3444554544332 2234455677777776554321 225667889999999999987654333 222333334456
Q ss_pred CHHHHHHHHHHHHHHc
Q psy16012 322 SSQDILSTEMNILAVL 337 (712)
Q Consensus 322 T~~EIl~mE~~ILktL 337 (712)
+.++|+..=+.|+..+
T Consensus 244 ~~~~l~~~~~~i~~l~ 259 (323)
T 1jkw_A 244 CLSQLLDIMKSMRNLV 259 (323)
T ss_dssp CTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 7788877666665544
No 34
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=40.70 E-value=59 Score=32.78 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhhccCc-cccCCcchhhHHHHHHHHHHHhccCCCCCccccccccCCCCCHH
Q psy16012 246 VLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNA-NIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQ 324 (712)
Q Consensus 246 iLVDWL~EV~~~ykLs~ET~~LAV~yfDRFLS~~~-~iv~k~~LQLIGiTCLfIASKvEEi~pP~i~dL~~itd~~yT~~ 324 (712)
.+.+-|..+.+.-+++..++--||.+--.|.-... .-..-.+-|=++++||+|||--- ..|..+.++- .-|+....-
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~-~~PiplaE~r-~lD~sL~Dv 91 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEA-QQPLPLAEVR-CLDSSLGDV 91 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHT-TCCCCHHHHH-HHCTTCCCH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHc-CCCccHHHHH-HHhhhhhHH
Confidence 67888899999999999999999999988875422 01224677889999999999632 2244565653 445555544
Q ss_pred HHHHHHHHHHHHcC
Q psy16012 325 DILSTEMNILAVLE 338 (712)
Q Consensus 325 EIl~mE~~ILktL~ 338 (712)
++.+.| |++.|+
T Consensus 92 elrr~E--iv~~l~ 103 (260)
T 3h4c_A 92 ELRRAD--IVRELH 103 (260)
T ss_dssp HHHHHH--HHHHTT
T ss_pred HHHHHH--HHHHcc
Confidence 555544 445554
No 35
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=40.04 E-value=1.4e+02 Score=30.06 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcccccccCcHHHHHHHHHHHHcCh--------hHHHHhh--CCCHHhHHHHHHHHHH
Q psy16012 378 LYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSK--------ELACMIS--GLRLESLEDCIEWMNI 437 (712)
Q Consensus 378 l~~~A~~LLdL~LlD~~fl~f~PSvIAAAAL~lA~~~--------e~L~~vt--Gy~~eeL~eCve~L~~ 437 (712)
.+..|..++|-.+.-........-.||+||+++|++. ..+..++ .|+.++|..+-..|.+
T Consensus 77 tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~ 146 (271)
T 2w96_A 77 VFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVN 146 (271)
T ss_dssp HHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4566777777777766777888999999999999842 2334444 3777777665544443
No 36
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=32.46 E-value=1.7e+02 Score=30.21 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcccccccCcHHHHHHHHHHHHcCh--------hHHHHhhC--CCHHhHHHHHHHH
Q psy16012 378 LYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSK--------ELACMISG--LRLESLEDCIEWM 435 (712)
Q Consensus 378 l~~~A~~LLdL~LlD~~fl~f~PSvIAAAAL~lA~~~--------e~L~~vtG--y~~eeL~eCve~L 435 (712)
.+..|..++|--+.-........-.||+||+++|.+- ..+..+++ |+.++|..+=..|
T Consensus 91 t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~I 158 (306)
T 3g33_B 91 VFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLV 158 (306)
T ss_dssp HHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHH
Confidence 4556666777777666677888899999999999842 23444444 6777765544333
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=24.52 E-value=2.4e+02 Score=28.61 Aligned_cols=62 Identities=3% Similarity=0.051 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhcc-cccccCcHHHHHHHHHHHHcCh--------hHHHHhh--CCCHHhHHHHHHHHHH
Q psy16012 376 RTLYTQCIRLLDLCHLD-IRCLNYSYSVLATTAIYLVCSK--------ELACMIS--GLRLESLEDCIEWMNI 437 (712)
Q Consensus 376 ~~l~~~A~~LLdL~LlD-~~fl~f~PSvIAAAAL~lA~~~--------e~L~~vt--Gy~~eeL~eCve~L~~ 437 (712)
.+.+..|..++|-.+.- ........-.+|+||+++|++. ..+..++ .|+.++|..+-..|.+
T Consensus 68 ~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~ 140 (283)
T 1w98_B 68 RETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMK 140 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44566677777776664 3456788899999999999842 2344444 3777777766554444
No 38
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.88 E-value=19 Score=46.20 Aligned_cols=26 Identities=27% Similarity=0.121 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHHHhcCchhHHHHH
Q psy16012 243 PRTVLLDWLSEVCEVYTLHRETFYLT 268 (712)
Q Consensus 243 ~R~iLVDWL~EV~~~ykLs~ET~~LA 268 (712)
.|..+++=|..|-..+++.-+--|++
T Consensus 1350 AR~~Ii~Ei~~v~~~~G~~Vd~RHl~ 1375 (1752)
T 3h0g_A 1350 TRSALLKELRNVIEFDGSYVNYRHLA 1375 (1752)
T ss_dssp HHHHHHHHHHTTSCSSSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 37777777777666666665555554
No 39
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.07 E-value=22 Score=45.66 Aligned_cols=6 Identities=17% Similarity=0.174 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy16012 401 SVLATT 406 (712)
Q Consensus 401 SvIAAA 406 (712)
|.|+.|
T Consensus 1401 s~l~~a 1406 (1752)
T 3h0g_A 1401 GALMRC 1406 (1752)
T ss_dssp HHHHHH
T ss_pred CHHHHh
Confidence 444333
Done!