RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16012
(712 letters)
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 223 bits (569), Expect = 1e-67
Identities = 102/255 (40%), Positives = 148/255 (58%), Gaps = 22/255 (8%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R +LLDWL EVCEVY LHRETFYL D+ DRY++T N V K LQLIG+++L IAAK+E
Sbjct: 50 RAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN-VVKTLLQLIGISSLFIAAKLE 108
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
EIYPPK+ +AYVTDGACS +IL+ E+ I+ L+W ++P+T WLNV++QV Y
Sbjct: 109 EIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLH 168
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGL 423
+ P + + ++ Q LLDLC LD+ CL + Y +LA +A+Y S EL +SG
Sbjct: 169 EV----LLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSSSELMQKVSGY 224
Query: 424 RLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSVSM 483
+ +E+C++WM + +++ E L+H A H++
Sbjct: 225 QWCDIENCVKWMVPFAMVIRET--------------GSSKLKH--FRGVADED-AHNIQT 267
Query: 484 ELSDLAIAESAKLLK 498
L + + A+ K
Sbjct: 268 HRDSLDLLDKARAKK 282
Score = 40.9 bits (96), Expect = 9e-04
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 107 RPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVF-WII 160
R SP P L WAN E++W ++ +++ LRD H L++HP + P+MR + W++
Sbjct: 6 RGSPLPVLSWANREEVWKIM--LNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLM 58
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 192 bits (489), Expect = 3e-56
Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 29/208 (13%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R ++ W+ EVCE E F L ++Y+DR+LS V K +LQL+G + +A+K++
Sbjct: 57 RKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEP--VKKSRLQLLGATCMFVASKMK 114
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
E P TD + +++L E+ ++ L+WN+ +T H ++ FL
Sbjct: 115 ETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFL--------S 166
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLV------------ 411
R + LC D++ ++ S++A ++
Sbjct: 167 KMPEAEENKQIIRKH---AQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNF 223
Query: 412 ----CSKELACMISGLRLESLEDCIEWM 435
+ + L C E +
Sbjct: 224 LSYYRLTRFLSRVIKCDPDCLRACQEQI 251
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
ATP-BIN cell division, disease mutation, kinase; 3.00A
{Homo sapiens}
Length = 306
Score = 189 bits (483), Expect = 4e-55
Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 25/207 (12%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R +L W+ EVCE E F L ++Y+DRYLS K QLQL+G +++A+K+
Sbjct: 71 RKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP--TRKAQLQLLGAVCMLLASKLR 128
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
E P + TD A S + + E+ +L L+W++ V AH +L L + R
Sbjct: 129 ETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDR 188
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLV------------ 411
+ L LC D Y S++AT +I
Sbjct: 189 QA-----------LVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGD 237
Query: 412 CSKELACMISGLRLESLEDCIEWMNIY 438
EL I+G ++ L C E +
Sbjct: 238 ELTELLAGITGTEVDCLRACQEQIEAA 264
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent
kinase. protein/protein complex, transferase; 2.50A
{Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Length = 252
Score = 186 bits (475), Expect = 1e-54
Identities = 38/204 (18%), Positives = 70/204 (34%), Gaps = 22/204 (10%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R VL W+ VC+ F L + +D + + ++ Q AL IA KV
Sbjct: 49 RKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR--IDRENYQSTAAVALHIAGKVR 106
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
P K + AY+ GA ++ +L+ E+ L L W + + L ++
Sbjct: 107 AYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIM------ 160
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSK--------- 414
+Y C + D R ++ ++L ++
Sbjct: 161 -----HAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYDYYENRI 215
Query: 415 ELACMISGLRLESLEDCIEWMNIY 438
+ C + E L C + ++I
Sbjct: 216 DGVCKSLYITKEELHQCCDLVDIA 239
Score = 31.7 bits (72), Expect = 0.60
Identities = 7/57 (12%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 105 PPRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVF-WII 160
F NEED ++ +++ + ++ + R + W+
Sbjct: 3 SQEFQGFLDSSLLNEEDCRQMIYRSEREHDA--RMVGVNVDQHFTSQYRKVLTTWMF 57
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C-TERM domain of kinase, cell
cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 185 bits (471), Expect = 6e-54
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 13/167 (7%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
RT+LL W+ +CE + L + F L++ +DRYL K+ LQ IG A ++I +K+
Sbjct: 52 RTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQ--GTKKTLQKIGAACVLIGSKIR 109
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
+ P VS Y++ ++ ++++ E +IL L+W+ V A +L +
Sbjct: 110 TVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDL 169
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYL 410
LY + + S ++ +
Sbjct: 170 WP-----------QLYEAASTTICKALIQPNIALLSPGLICAGGLLT 205
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
2x1n_B* 1vyw_B* ...
Length = 260
Score = 184 bits (470), Expect = 1e-53
Identities = 63/201 (31%), Positives = 105/201 (52%), Gaps = 24/201 (11%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R +L+DWL EV E Y L ET +L ++YIDR+LS + V + +LQL+G AA+++A+K E
Sbjct: 39 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLS--SMSVLRGKLQLVGTAAMLLASKFE 96
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
EIYPP+V+++ Y+TD + + +L E +L VL +++ T + +L + + +
Sbjct: 97 EIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK 156
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDI-RCLNYSYSVLATTAIYLV-------CSKE 415
+L + L +L +D L Y SV+A A +L E
Sbjct: 157 VESLAM-F-------------LGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPE 202
Query: 416 LACMISGLRLESLEDCIEWMN 436
+G LESL+ C+ ++
Sbjct: 203 SLIRKTGYTLESLKPCLMDLH 223
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin,
cell cycle, signaling protein; 2.90A {Human herpesvirus
8} SCOP: a.74.1.1 a.74.1.1
Length = 257
Score = 183 bits (466), Expect = 3e-53
Identities = 39/194 (20%), Positives = 69/194 (35%), Gaps = 15/194 (7%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R +L W+ VC+ Y L L ++ +DR L V K+ Q G A L++A+K+
Sbjct: 51 RKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQ--VSKEHFQKTGSACLLVASKLR 108
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
+ P S Y + S Q+++ E +L L W V A + L +
Sbjct: 109 SLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLL----KLVG 164
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMI--S 421
+ T L+ +D + S+++ L+ + S
Sbjct: 165 GSQHLDFWHHEVNT-------LITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHS 217
Query: 422 GLRLESLEDCIEWM 435
G + L +
Sbjct: 218 GGVVPQLASILGCD 231
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 182 bits (464), Expect = 8e-53
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R +L+DWL +V + L +ET Y+T+ IDR++ N VPK+ LQL+GV A+ IA+K E
Sbjct: 38 RAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQ--NNSVPKKMLQLVGVTAMFIASKYE 95
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
E+YPP++ D+A+VTD + I EM IL L + + ++L + +
Sbjct: 96 EMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASK-IGEVDVE 154
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLV-------CSKEL 416
H L Y L++L LD +++ S +A A L
Sbjct: 155 QHTLAK-Y-------------LMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPT 200
Query: 417 ACMISGLRLESLEDCIEWMNIYWVILCEKS 446
ESL ++ + V++ +
Sbjct: 201 LQHYLSYTEESLLPVMQHLAKNVVMVNQGL 230
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.8 bits (173), Expect = 1e-12
Identities = 104/622 (16%), Positives = 172/622 (27%), Gaps = 207/622 (33%)
Query: 132 DSLSLRDPHMLDRHPSI-----VPRMRTPVFWIITGLSLKMFMMYEYRLYCVNNYFLFTI 186
D+ S R P L H S+ VP T F+I + L + F
Sbjct: 2 DAYSTR-PLTL-SHGSLEHVLLVP---TASFFIASQLQ-EQFNK---------------- 39
Query: 187 FTPSNIVLPILTLNKVTRQVSLAVE-SSVP---STFL--VTMQKEGQQKFGLEVEALQ-- 238
L + T + E ++ FL V+ E K G + L
Sbjct: 40 -----------ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE-PSKVGQFDQVLNLC 87
Query: 239 VKYLPRTVLL--DWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAAL 296
+ L D + ++ + T T + I Y+ A I+ K+ +AL
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI--TARIMAKRPFDKKSNSAL 145
Query: 297 MIAAK-------------------VEE------IYPPKVSDYAYVTDGACSSQDILSTEM 331
A EE Y V D++
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV-------------GDLIKFSA 192
Query: 332 NILAVLEWNITPVTAHY--------WLNVFLQVVYHRSSRCHNLGFI-YPAFSRTLYTQC 382
L+ L + WL S + ++ S L
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWL--------ENPSNTPDKDYLLSIPISCPL---- 240
Query: 383 IRLLDLCHLDIRC--LNYS----YSVLATTAIYLVCSKEL--ACMISGLR-----LESLE 429
I ++ L H + L ++ S L S+ L A I+ S+
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGA---TGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 430 DCIEWMNIYWVIL-C-EKSPGTDYC-----DS-DSNELPPGPLRHNNVFDYAYSYHKHSV 481
I + +++ + C E P T DS ++NE P P
Sbjct: 298 KAITVL--FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP------------------ 337
Query: 482 SMELS--DLAIAESAKLLKEEQQPTTPGNRTYSV-----PCDM--TPPPSSSKG------ 526
M LS +L + + + P + + ++ + PP S G
Sbjct: 338 -M-LSISNLTQEQVQDYVNKTNS-HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 527 QTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKASRKSAPPAITTPCSSKSLRS 586
+ S Q+R P S + S LP + +P S L
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKF----SNRFLP----------------VASPFHSHLLVP 434
Query: 587 GSD--SQQLQTITAEY------I-IYHAIIS---RRLQTKISRTAFYMMCAK--D-QDSL 631
SD ++ L + I +Y R L IS + + +
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 632 SLRDPHMLDRHPSIVPRMRTLS 653
+ H+LD P + L+
Sbjct: 495 QFKATHILDFGPGGASGLGVLT 516
Score = 30.4 bits (68), Expect = 2.7
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 56/151 (37%)
Query: 262 RETFYLTIDYIDRYLSTN-----ANIV---PK--------QQLQLI--GVAALMIAA--- 300
++ + + D + +IV P ++ + I +A++
Sbjct: 1643 QDVW----NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 301 ---KVEEIYP---PKVSDYAYVTD-GACSS----Q-DILSTEMNILAVL-EWNITPVTA- 346
K E+I+ + Y + ++ G S+ Q + E L + P A
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 347 ---H----Y-----WLNVF-----LQVVYHR 360
H Y +V ++VV++R
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Score = 28.9 bits (64), Expect = 7.2
Identities = 28/193 (14%), Positives = 51/193 (26%), Gaps = 76/193 (39%)
Query: 555 TILPATPSSSKASR------KSAPPAITT------PCSSKSLRSGSDSQQLQTITAEYII 602
+L T S AS+ K P P + L +++
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL------------VGKFLG 66
Query: 603 YHAIISRRLQTKISRTAFYMMCAK------DQDSLSLRDPH-----MLDRHPSIVPRMRT 651
Y +S ++ S+ + + L D H +L + + + + +
Sbjct: 67 Y---VSSLVEP--SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 652 LSVSY----------------SLFLDHVPRLPSQICHVMGVLTPDIKDPLILVVGV-NNH 694
L +Y S V +Q+ + G G N
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--------------GQGNTD 167
Query: 695 LY-----SLYEDY 702
Y LY+ Y
Sbjct: 168 DYFEELRDLYQTY 180
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 3e-10
Identities = 86/587 (14%), Positives = 161/587 (27%), Gaps = 210/587 (35%)
Query: 219 LVTMQKEGQQKFGLEVEALQVKYLPRTVLLDWL----SEVCEVYTLHRETFYLTIDYIDR 274
L++ Q+E QKF +E E L++ Y +L ++ + I+ DR
Sbjct: 71 LLSKQEEMVQKF-VE-EVLRINY-------KFLMSPIKTEQRQPSMMTRMY---IEQRDR 118
Query: 275 YLSTNANIVPK----------------QQLQ------LIG---------VAALMIAAKVE 303
L + + K +L+ + G + ++ KV+
Sbjct: 119 -LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
K+ ++ C+S + + + +L L + I P + H S+
Sbjct: 178 CKMDFKI---FWLNLKNCNSPETV---LEMLQKLLYQIDPN--------WTSRSDHSSNI 223
Query: 364 CHNLGFIYPAFSRTL----YTQCIRLLD-------LCHLDIRCLNYSYSVLATT---AIY 409
+ I R L Y C+ +L ++ C +L TT +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-----KILLTTRFKQVT 278
Query: 410 LVCSKELACMIS------GLRL-ESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPP- 461
S IS L E +++++ +LP
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-----------------RPQDLPRE 321
Query: 462 ----GPLR----------HNNVFDYAYSYHKHSVSMELSDLAIAESAKLLKEEQQPTTPG 507
P R +D + KH +L+ I S +L+ +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDN---W-KHVNCDKLTT-IIESSLNVLEPAEY----- 371
Query: 508 NRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKAS 567
R + PP S+ P S ++ S
Sbjct: 372 -RKMFDRLSVFPP---------------------SAHIPTILLS----LIWFDVIKSD-- 403
Query: 568 RKSAPPAITTPCSSKSL--RSGSDSQQLQTITAEYIIYHAIISRRLQTKISR-------- 617
+ SL + +S I I L+ K+
Sbjct: 404 ----VMVVVNKLHKYSLVEKQPKEST--------ISIPS--IYLELKVKLENEYALHRSI 449
Query: 618 -TAFYMMCAKDQDSLSLRDP-----------HMLD-RHPSIVPRMRTLSVSYSLFLDHVP 664
+ + D D L H+ + HP + R + + + FL+
Sbjct: 450 VDHYNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQKI 507
Query: 665 RLPSQICHVMGVLTPDIKDPLILVVGVNNHLYSLYEDYIITS-NVYE 710
R S + G + ++ Y+ YI + YE
Sbjct: 508 RHDSTAWNASGSILNTLQQ------------LKFYKPYICDNDPKYE 542
Score = 47.5 bits (112), Expect = 1e-05
Identities = 65/511 (12%), Positives = 131/511 (25%), Gaps = 192/511 (37%)
Query: 101 VTKLP-PRPSPFPTLDWANEEDLWDLLCAKDQDSLSLRDPH-MLD-----------RHPS 147
K R P+ L A LL + ++ + +L
Sbjct: 126 FAKYNVSRLQPYLKLRQA-------LLELRPAKNVLI---DGVLGSGKTWVALDVCLSYK 175
Query: 148 IVPRMRTPVFWIITG------LSLKMFMMYEYRL---YCVNNYFLFTIFTPSNIV----- 193
+ +M +FW+ L+M Y++ + + I + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 194 -----------LPIL-------TLN------KV---TRQVSLAVESSVPSTFLVTMQKEG 226
L +L N K+ TR + S +T +++
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH- 294
Query: 227 QQKFGL---EVEALQVKY-------LPRTVLLDWLSEVCEVYTLHRETF-YLTIDYIDRY 275
L EV++L +KY LPR EV D + +
Sbjct: 295 --SMTLTPDEVKSLLLKYLDCRPQDLPR--------EVLTTNPRRLSIIAESIRDGLATW 344
Query: 276 LSTNANIVPKQQLQLIGVAAL--MIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNI 333
+ + L +I + + + P + + S + +I
Sbjct: 345 ----------DNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FD---RLS---VFPPSAHI 387
Query: 334 -LAVLEWNITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLD 392
+L W +V V ++ H + + + + +L+
Sbjct: 388 PTILLS--------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI----SIPSI-YLE 434
Query: 393 IRCL--------------------------------NYSYSVLA--------------TT 406
++ Y YS +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 407 AIYL--------VCSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDY-CDSDSN 457
++L + A SG L +L+ + Y Y CD+D
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ----LKFY----------KPYICDND-- 538
Query: 458 ELPPGPLRHNNVFDYAYSYHKHSVSMELSDL 488
P N + D+ ++ + + +DL
Sbjct: 539 --PKYERLVNAILDFLPKIEENLICSKYTDL 567
Score = 46.0 bits (108), Expect = 5e-05
Identities = 73/530 (13%), Positives = 158/530 (29%), Gaps = 174/530 (32%)
Query: 227 QQKFGLEVEALQVKY---LPRTVLLDWLSEVCEVYTL-HRE--TFYLTIDYIDRYLSTNA 280
+ F V+ K +P+++L E+ + T L LS
Sbjct: 26 EDAF---VDNFDCKDVQDMPKSILSK--EEIDHIIMSKDAVSGTLRL----FWTLLSKQE 76
Query: 281 NIVPKQQLQLIGVAALMIAAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWN 340
+V Q+ VEE+ +Y ++ + TE
Sbjct: 77 EMV--QKF-------------VEEVLRI---NYKFLMSP-------IKTEQR-------Q 104
Query: 341 ITPVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRT---LYTQCIR--LLDLCHLDIRC 395
+ +T Y + R R +N ++ ++ + Y + +R LL+L
Sbjct: 105 PSMMTRMY--------IEQRD-RLYNDNQVFAKYNVSRLQPYLK-LRQALLEL------- 147
Query: 396 LNYSYSVLATTAIYLV------CSKE-LACMISGLRLESLEDCIEWMNIYWVILCEKSPG 448
A ++ K +A + ++ +++ I+W+ L
Sbjct: 148 ---------RPAKNVLIDGVLGSGKTWVA--LDVCLSYKVQCKMDF-KIFWLNL-----K 190
Query: 449 TDYCDSDSNELPP---------GPLRHNNVFDYAYSYHKHSVSMELSDLAIAESAK---- 495
C+S L + HS+ EL L ++ +
Sbjct: 191 --NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 496 LLKEEQQPTTPGNRTYSVPCD--MTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSS 553
+L Q +++ C +T + K T S A + TP
Sbjct: 249 VLLNVQNAKAW--NAFNLSCKILLT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 554 KTILPATPSSSKASRKSAPPAITTPCSSKSLRSGSDSQQLQTITAEYIIYHAIISRRLQT 613
K++L K C + L ++ T + +II+ ++
Sbjct: 304 KSLL------LKY----------LDCRPQDLPR-----EVLTTNPRRL---SIIAESIRD 339
Query: 614 KISRTAFYMMCAKD------QDSLSLRDPHMLDRHPSIVPRMRTLSVSYSLFLDHVPRLP 667
++ + D + SL++ +P R + S+F +P
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEP----------AEYRKMFDRLSVFPPSAH-IP 388
Query: 668 SQICHVMGVLTPDIK--DPLILVVGVNN-------------HLYSLYEDY 702
+ ++ ++ D+ D +++V ++ + S+Y +
Sbjct: 389 TI---LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive
transcription elongation factor, P-TEFB; 1.50A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 258
Score = 53.4 bits (128), Expect = 7e-08
Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 31/198 (15%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R ++ +V LH +T I Y R+ ++ + + G L +A KVE
Sbjct: 41 RREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHS--FKQFPRYVTGACCLFLAGKVE 98
Query: 304 EIYPPKVSDYAYV-----------TDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNV 352
E P K D G ++++ E +L +++++ + +L
Sbjct: 99 E-TPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLK 157
Query: 353 FLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVC 412
+ + + ++ L ++ L + ++A +Y
Sbjct: 158 YAKQLKGDKNKIQK-----------LVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMY--- 203
Query: 413 SKELACMISGLRLESLED 430
LA + ++
Sbjct: 204 ---LAGRLCKFEIQEWTS 218
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P-
TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1
a.74.1.1 PDB: 2w2h_C
Length = 358
Score = 52.5 bits (125), Expect = 2e-07
Identities = 55/338 (16%), Positives = 91/338 (26%), Gaps = 57/338 (16%)
Query: 249 DWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPP 308
+ L ++ + + + T I Y+ R+ + + + AAL +AAKVEE P
Sbjct: 43 NLLQDMGQRLNVSQLTINTAIVYMHRFYMIQS--FTRFPGNSVAPAALFLAAKVEE-QPK 99
Query: 309 KVSDYAYVTDGACSS----------------QDILSTEMNILAVLEWNITPVTAHYWLNV 352
K+ V QD++ E IL L + +T H +
Sbjct: 100 KLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVK 159
Query: 353 FLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVC 412
Q+V A T + HL L Y+ V+A I+
Sbjct: 160 CTQLV--------------RASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIH--- 202
Query: 413 SKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDY 472
LAC S + D W W + L ++
Sbjct: 203 ---LACKWSNWEIPVSTDGKHW----WEYVDA--------TVTLELL------DELTHEF 241
Query: 473 AYSYHKHSVSMELSDLAIAESAKLLKEEQQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSS 532
K ++ A A + T + S G +S
Sbjct: 242 LQILEKTPNRLKRIWNWRACEAAKKTKADDRGTDEKTSEQGGTGGGSGGGSGGGSGGGTS 301
Query: 533 KARQARTPTSSKAPPTTPSSSKTILPATPSSSKASRKS 570
+ +A P + AS +
Sbjct: 302 GGVPGQNTGGQEARPNYHCQLCFLRSLGIDYLDASLRK 339
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 51.6 bits (123), Expect = 4e-07
Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 24/203 (11%)
Query: 249 DWLSEVCEVYTLH--RETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIY 306
L E C V+ R Y R+ N+ V + ++I + +A KV+E +
Sbjct: 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNS--VMEYHPRIIMLTCAFLACKVDE-F 118
Query: 307 PPKVSDYAYVTDGACSSQ-----DILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRS 361
+ + Q IL E+ ++ L +++ + FL + R
Sbjct: 119 NVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRY 178
Query: 362 SRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMIS 421
N L L+ L L Y+ S +A TAI + +
Sbjct: 179 PILEN--------PEILRKTADDFLNRIALTDAYLLYTPSQIALTAIL------SSASRA 224
Query: 422 GLRLESLEDCIEWMNIYWVILCE 444
G+ +ES + L +
Sbjct: 225 GITMESYLSESLMLKENRTCLSQ 247
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat
domains, transcription-cell cycle complex; 3.00A
{Schizosaccharomyces pombe}
Length = 235
Score = 42.7 bits (100), Expect = 2e-04
Identities = 29/202 (14%), Positives = 61/202 (30%), Gaps = 30/202 (14%)
Query: 250 WLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPPK 309
+ + L + I + RY+ N L+ + + ++ KVEE P
Sbjct: 34 VVQTFGDRLRLRQRVLATAIVLLRRYMLKK-NEEKGFSLEALVATCIYLSCKVEE-CPVH 91
Query: 310 VSDYAYVTDGACS------SQDILSTEMNILAVLEWNITPVTAHYWLNVFLQVVYHRSSR 363
+ + S +I E I++VL+ + + L
Sbjct: 92 IRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFH-------- 143
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSK------ELA 417
++ +++ + CL LA A+ + C +L
Sbjct: 144 -------DGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLL 196
Query: 418 CMISGLRLESLEDCI-EWMNIY 438
+I + C+ ++IY
Sbjct: 197 DLIKSTDAFKVILCVQRIISIY 218
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 40.8 bits (95), Expect = 0.002
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 502 QPTTPGNRTYSVPCDMTPPPSSSKGQTTPS-SKARQARTPTSSKAPPTTPSSSKTILPAT 560
T+P YS P S S T+PS S + +PTS PT+PS S T +
Sbjct: 1607 SATSPS---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1663
Query: 561 PSSSKASRKSAPPAITTPCSSKSLRSGSDSQ 591
P+S S S + T+P S + S S +
Sbjct: 1664 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1694
Score = 34.3 bits (78), Expect = 0.16
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 503 PTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPS 562
PT+P YS + P+S T S +PTS PT+PS S T +P+
Sbjct: 1601 PTSPS---YS-ATSPSYSPTSPSYSPTSPS-----YSPTSPSYSPTSPSYSPTSPSYSPT 1651
Query: 563 SSKASRKSAPPAITTPCSSKSLRSGSDSQQLQTITA 598
S S S + T+P S + S S + + T+
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1687
Score = 34.3 bits (78), Expect = 0.17
Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 4/121 (3%)
Query: 463 PLRHNNVFDYAYSYHKHSVSMELSDLAIAESAKLLKEEQQPTTPGNRTYSVPCDMTPPPS 522
PL + + + S +S +PG S + P
Sbjct: 1507 PLVQGGSEGRE-GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGY 1565
Query: 523 SSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKASRKSAPPAITTPCSSK 582
S+ PSS + +PTS PT+PS S T +P+S S S + T+P S
Sbjct: 1566 STSPAYMPSSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSP 1622
Query: 583 S 583
+
Sbjct: 1623 T 1623
Score = 33.1 bits (75), Expect = 0.39
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 505 TPGNRTYSVPCDMTPPPSSSKGQTTPS-SKARQARTPTSSKAPPTTPSSSKTILPATPSS 563
+P + +YS P S S T+PS S + +PTS PT+PS S T +P+S
Sbjct: 1649 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1708
Query: 564 SKASRKSAPPAITTPCSSKSLRSGSDSQQ 592
S S + T+P S + S S +
Sbjct: 1709 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1737
Score = 31.2 bits (70), Expect = 1.4
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 503 PTTPGNRTYSVPCDMTPPPSSSKGQTTPS-SKARQARTPTSSKAPPTTPSSSKTILPATP 561
PT+P YS P S S T+PS S + +PTS PT+PS S T +P
Sbjct: 1671 PTSPS---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1727
Query: 562 SSSKASRKSAPPAITTP 578
+S S S + T+P
Sbjct: 1728 TSPSYSPTSPSYSPTSP 1744
Score = 30.0 bits (67), Expect = 3.4
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 503 PTTPGNRTYSVPCDMTPP---PSSSKGQTTPS--SKARQARTPTSSKAPPTTPSSSKTIL 557
PT+P S T P P+S T S + +PTS PT+PS S T
Sbjct: 1615 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674
Query: 558 ---PATPSSSKASRKSAP--PAITTPCSSKSLRSGSDS 590
P +PS S S +P P+ + S S S S S
Sbjct: 1675 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1712
Score = 29.7 bits (66), Expect = 4.6
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 503 PTTPG-NRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATP 561
PT+P + T +P S + +P+S + +P+ S P+ +S + P +P
Sbjct: 1685 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1744
Query: 562 SSSKAS 567
S S S
Sbjct: 1745 SYSPTS 1750
Score = 29.3 bits (65), Expect = 6.6
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 502 QPTTPGNRTYSVPCDMTPPPSSSKGQTTPS-SKARQARTPTSSKAPPTTPSSSKTILPAT 560
PT+P YS P S S T+PS S + +PTS PT+PS S P +
Sbjct: 1698 SPTSPS---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTS 1750
Query: 561 PS 562
PS
Sbjct: 1751 PS 1752
>2ivx_A Cyclin-T2; transcription regulation, cell division,
phosphorylation, NU protein, cell cycle, transcription;
1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A
3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B*
3lq5_B* 3my1_B* 3tn8_B*
Length = 257
Score = 37.8 bits (87), Expect = 0.009
Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 39/206 (18%)
Query: 249 DWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVEEIYPP 308
+ + E+ + + + T I Y+ R+ ++ K +I AL +AAKVEE
Sbjct: 36 NLIQEMGQRLNVSQLTINTAIVYMHRFYMHHS--FTKFNKNIISSTALFLAAKVEE-QAR 92
Query: 309 KVSDYAYVTDGACS----------------SQDILSTEMNILAVLEWNITPVTAHYWLNV 352
K+ V +++++ E +L L + IT H +
Sbjct: 93 KLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVK 152
Query: 353 FLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVC 412
Q+V T + HL CL Y +V+A I+
Sbjct: 153 CTQLVRASKDLAQ--------------TSYFMATNSLHLTTFCLQYKPTVIACVCIH--- 195
Query: 413 SKELACMISGLRLESLEDCIEWMNIY 438
LAC S + D W
Sbjct: 196 ---LACKWSNWEIPVSTDGKHWWEYV 218
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase,
signaling protein,transfera cycle complex; HET: MES AGS;
2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Length = 293
Score = 36.5 bits (83), Expect = 0.023
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 3/117 (2%)
Query: 240 KYLPRTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANI-VPKQQLQLIGVAALMI 298
K P + ++ + + +L ++ YID + + + + A +
Sbjct: 70 KIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTV 129
Query: 299 AAKVEEIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNITPVTAHYWLNVFLQ 355
A K + YA V G ++ E + L + + I P + L Q
Sbjct: 130 ATKGLCDSFSTNAHYAKV--GGVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQ 184
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 35.8 bits (82), Expect = 0.052
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 502 QPTTPGNRTYSVPCDMTPPPSSSKGQTTPS-SKARQARTPTSSKAPPTTPSSSKTILPAT 560
PT+P YS P S S T+PS S + +PTS PT+PS S T +
Sbjct: 1620 SPTSPS---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYS 1676
Query: 561 PSSSKASRKSAPPAITTP 578
P+S S S + T+P
Sbjct: 1677 PTSPSYSPTSPSYSPTSP 1694
Score = 33.5 bits (76), Expect = 0.30
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 501 QQPTTPGNRTYSVPCDMTPPPSSSKGQTTPS--------SKARQARTPTSSKAPPTTPSS 552
+ PT+PG + V P S + T+P+ S + +PTS PT+PS
Sbjct: 1528 EAPTSPG---FGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1584
Query: 553 SKTILPATPSSSKASRKSAPPAITTPCSS 581
S T +P+S S S + T+P S
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1613
Score = 33.1 bits (75), Expect = 0.37
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 501 QQPTTPGNRTYSVPCDMTPPPSSSKGQTTPS-SKARQARTPTSSKAPPTTPSSSKTILPA 559
+P + +YS P S S T+PS S + +PTS PT+PS S T
Sbjct: 1588 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1647
Query: 560 TPSSSKASRKSAPPAITTP 578
+P+S S S + T+P
Sbjct: 1648 SPTSPSYSPTSPAYSPTSP 1666
Score = 33.1 bits (75), Expect = 0.42
Identities = 17/96 (17%), Positives = 33/96 (34%)
Query: 503 PTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPS 562
++ ++S + +S PT+P+ S T +P+
Sbjct: 1500 SNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPT 1559
Query: 563 SSKASRKSAPPAITTPCSSKSLRSGSDSQQLQTITA 598
S S S + T+P S + S S + + T+
Sbjct: 1560 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1595
Score = 33.1 bits (75), Expect = 0.43
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 503 PTTPGNRTYSVPCDMTPPPSSSK----GQTTPS-SKARQARTPTSSKAPPTTPSSSKTIL 557
PT+P S T P S T+PS S + +PTS PT+PS S T
Sbjct: 1579 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1638
Query: 558 PATPSSSKASRKSAPPAITTP 578
+P+S S S + T+P
Sbjct: 1639 SYSPTSPSYSPTSPSYSPTSP 1659
Score = 32.8 bits (74), Expect = 0.47
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 501 QQPTTPGNRTYSVPCDMTPPPSSSKGQT-TPSSKARQARTPTSSKAPPTTPSSSKTILPA 559
PT+P S T P S + +P+S A +PTS PT+PS S P
Sbjct: 1626 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS---PAYSPTSPSYSPTSPSYS----PT 1678
Query: 560 TPSSSKASRKSAPPA 574
+PS S S +P +
Sbjct: 1679 SPSYSPTSPSYSPTS 1693
Score = 32.8 bits (74), Expect = 0.52
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 503 PTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPS 562
PT+P YS P + P+S T + +PTS PT+PS S T +P+
Sbjct: 1614 PTSPS---YS-PTSPSYSPTSPSYSPTS-----PSYSPTSPSYSPTSPSYSPTSPAYSPT 1664
Query: 563 SSKASRKSAPPAITTPCSSKSLRSGSDS 590
S S S + T+P S + S S +
Sbjct: 1665 SPSYSPTSPSYSPTSPSYSPTSPSYSPT 1692
Score = 32.8 bits (74), Expect = 0.58
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 503 PTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQ----ARTPTSSKAPPTTPSSSKTILP 558
PT+P S P S + +P+S + + +PTS PT+PS S T
Sbjct: 1565 PTSPSYSPTS------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1618
Query: 559 ATPSSSKASRKSAPPAITTPCSSKSLRSGSDSQQLQTIT 597
+P+S S S + T+P S + S S + + T
Sbjct: 1619 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1657
Score = 32.4 bits (73), Expect = 0.70
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 503 PTTPGNRTYSVPCDMTPPPSSSKGQTTPS-SKARQARTPTSSKAPPTTPSSSKTILPATP 561
PT+P YS P S S T+PS S + +PTS PT+PS S T +P
Sbjct: 1572 PTSPS---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1628
Query: 562 SSSKASRKSAPPAITTPCSSKSLRSGSDSQQLQTITAE 599
+S S S + T+P S + S S + + T+
Sbjct: 1629 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1666
Score = 30.8 bits (69), Expect = 2.2
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 501 QQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPAT 560
PT+P S +P S + S + +PTS PT+PS S T +
Sbjct: 1654 YSPTSPAYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYS 1711
Query: 561 PSSSKASRKSAPPAITTPCSSK 582
P S S K +S+
Sbjct: 1712 PGSPAYSPKQDEQKHNENENSR 1733
Score = 28.9 bits (64), Expect = 8.8
Identities = 14/86 (16%), Positives = 26/86 (30%)
Query: 503 PTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPS 562
P + + + D+ S + S+ A A +S P+
Sbjct: 1472 PYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPT 1531
Query: 563 SSKASRKSAPPAITTPCSSKSLRSGS 588
S S + T+P S + + S
Sbjct: 1532 SPGFGVSSPGFSPTSPTYSPTSPAYS 1557
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 34.9 bits (80), Expect = 0.092
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 12/90 (13%)
Query: 503 PTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPS 562
PT+PG ++ P++ A P AP P K P P+
Sbjct: 5 PTSPGT--------PGVAAATQAANGGPATPA----PPALGAAPTGDPKPKKNKKPKNPT 52
Query: 563 SSKASRKSAPPAITTPCSSKSLRSGSDSQQ 592
+ + +A A + LR
Sbjct: 53 PPRPAGDNATVAAGHATLREHLRDIKAENT 82
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 34.3 bits (78), Expect = 0.12
Identities = 9/72 (12%), Positives = 18/72 (25%)
Query: 516 DMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKASRKSAPPAI 575
S + + + T +S PA P + + P +
Sbjct: 6 HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTV 65
Query: 576 TTPCSSKSLRSG 587
T + + G
Sbjct: 66 TGDSVLQRILRG 77
Score = 29.3 bits (65), Expect = 4.7
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 1/73 (1%)
Query: 501 QQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPAT 560
+ +VP PPP + P + + PT P ++
Sbjct: 33 SDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV-LQRILRGPTGPGTTSLAPAVR 91
Query: 561 PSSSKASRKSAPP 573
A
Sbjct: 92 YGRQPGPEAPASA 104
Score = 29.0 bits (64), Expect = 5.5
Identities = 9/65 (13%), Positives = 16/65 (24%)
Query: 514 PCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKASRKSAPP 573
P S +S A ++ PP T P P++
Sbjct: 9 HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68
Query: 574 AITTP 578
++
Sbjct: 69 SVLQR 73
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 34.4 bits (78), Expect = 0.13
Identities = 12/84 (14%), Positives = 24/84 (28%)
Query: 511 YSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKASRKS 570
P P +S ++ + + + + A P PS + SS + K
Sbjct: 28 RPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAVKQ 87
Query: 571 APPAITTPCSSKSLRSGSDSQQLQ 594
A S + + +
Sbjct: 88 TTAAAAATFSEQVGGGSGGAGRGG 111
Score = 32.5 bits (73), Expect = 0.47
Identities = 15/110 (13%), Positives = 28/110 (25%)
Query: 493 SAKLLKEEQQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSS 552
+ + + P S + ++ A +A T +P
Sbjct: 11 DSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPG 70
Query: 553 SKTILPATPSSSKASRKSAPPAITTPCSSKSLRSGSDSQQLQTITAEYII 602
S S S A +++ A T SG + +I
Sbjct: 71 SSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVI 120
>2h6o_A Major outer envelope glycoprotein GP350; viral protein; HET: NAG
MAN BMA NDG GAL FUC; 3.50A {Human herpesvirus 4}
Length = 470
Score = 34.1 bits (77), Expect = 0.14
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 478 KHSVSMELSDLAIAESAKLLKEEQQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQA 537
SV E+ I + E PG+ +++ C S G T +S
Sbjct: 195 NFSVKTEMLGNEIDIECIMEDGEISQVLPGDNKFNITCSGYESHVPSGGILTSTS----- 249
Query: 538 RTPTSSKAPPTTPSSSKTILP 558
P ++ P T + S + P
Sbjct: 250 --PVATPIPGTGYAYSLRLTP 268
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 33.7 bits (76), Expect = 0.18
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 494 AKLLKEEQQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSS 553
L + Q NR SV +P + T ++ P S+ T S +
Sbjct: 236 FYLDERSYQRAVITNRPGSVSPIKSPTSNF-----TTNTTQSVGSVPFSAPTERTRRSET 290
Query: 554 KTILPATPSSSKASRKSAPPAITTPCSSKS 583
+++ P + +S P SS S
Sbjct: 291 ESVNPVSTPASVEYHAGMKSLNKAPYSSNS 320
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 33.4 bits (75), Expect = 0.29
Identities = 13/106 (12%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 473 AYSYHKHSVSMELSDLAIAESAKLLKEEQQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSS 532
A+ +H H +L +L + E T + + ++ +
Sbjct: 2 AHHHHHHGHHHQLENLYFQGEETAVPENSGANTE------LVSGESEHSTNEADKQNEGE 55
Query: 533 KARQART----PTSSKAPPTTPSSSKTILPATPSSSKASRKSAPPA 574
AR+ + ++ + +P+S++ T ++ A++ +
Sbjct: 56 HARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKAS 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.34
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 43 ERKPLSELITRVSLSSPGSTSSEGHDPSTTVQ 74
E++ L +L + L + S P+ ++
Sbjct: 18 EKQALKKLQASLKLYADDSA------PALAIK 43
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 32.8 bits (74), Expect = 0.48
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 453 DSDSNELPPGPLRHNNVFDYAY-SYHKHSVSMELSDLAIAESAKLLKEEQQPTTPGNRTY 511
D + E+P + V +Y S+ L+ ++ + ++ ++ P R
Sbjct: 401 DKSAEEMPYLKCPLHTVLKLTPVAYGCRVESIYLNVESVCTHRERSEDAKKGPNPLMRRN 460
Query: 512 SVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKT 555
SV +P P+ + S PP P+
Sbjct: 461 SVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQLPG 504
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 32.0 bits (71), Expect = 0.49
Identities = 23/141 (16%), Positives = 37/141 (26%), Gaps = 9/141 (6%)
Query: 503 PTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKT------- 555
T S PP + TPS + +Q + + + S T
Sbjct: 22 ATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEA 81
Query: 556 ILPATPSSSKASRKSAPPAITTPCSSKSLRSGSDSQQLQTITAEYIIYHAIISRRLQTKI 615
A + A + + +S SL + T+ L
Sbjct: 82 SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGF 141
Query: 616 SRT--AFYMMCAKDQDSLSLR 634
A + A D D L L+
Sbjct: 142 MFKVQAQHDYTATDTDELQLK 162
Score = 28.9 bits (63), Expect = 4.4
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 3/73 (4%)
Query: 502 QPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATP 561
P N TP + K +PS + P K P+ + IL
Sbjct: 7 TPEIRVNHEPEPAGGATPGATLPK---SPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFE 63
Query: 562 SSSKASRKSAPPA 574
+ P+
Sbjct: 64 DTFVPEISVTTPS 76
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Chromobacterium violaceum}
Length = 407
Score = 32.0 bits (71), Expect = 0.70
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 500 EQQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPS--SSKTIL 557
+ + P R ++ P S + P + A Q R A P + + L
Sbjct: 5 QTSASLPLTRPQALETQAAAPQSDA-----PDASAGQTRAAPQGSAAPALAAARAKADEL 59
Query: 558 PATPSSSKASRKSAPPAITTPCSSKSLRSGSDSQQLQ 594
+AS + T + +S + S + Q
Sbjct: 60 GQAAREVRASVERQTAYETRLAAQRSAAAFSGGEPPQ 96
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 29.6 bits (66), Expect = 1.6
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 5/83 (6%)
Query: 505 TPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSS 564
+ G+ S PS K T A ++ P + S +TPSS
Sbjct: 2 SSGSSGMS-----MLKPSGLKAPTKILKPGSTALKTPTAVVAPVEKTISSEKASSTPSSE 56
Query: 565 KASRKSAPPAITTPCSSKSLRSG 587
+ + G
Sbjct: 57 TQEEFVDDFRVGERVWVNGNKPG 79
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell
cycle; 2.00A {Saccharomyces cerevisiae}
Length = 236
Score = 30.2 bits (67), Expect = 1.9
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 517 MTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKASRKSAPPAIT 576
M+P ++ K P + + TPS K L ++ + + +
Sbjct: 1 MSPVLTTPKRHAPPPEQLQN------VTDFNYTPSHQKPFLQPQAGTTVTTHQDIKQIVE 54
Query: 577 TPCSSK 582
S+
Sbjct: 55 MTLGSE 60
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 29.7 bits (66), Expect = 1.9
Identities = 9/67 (13%), Positives = 25/67 (37%)
Query: 497 LKEEQQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTI 556
+ + P+T + + +S+ + +PS+ + + + +S +
Sbjct: 105 VTKIGFPSTTPAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLT 164
Query: 557 LPATPSS 563
+ PSS
Sbjct: 165 ETSGPSS 171
>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A
{Rattus norvegicus} PDB: 3uel_A*
Length = 588
Score = 30.6 bits (68), Expect = 2.0
Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 15/143 (10%)
Query: 484 ELSDLAIAESAKLLKEEQQPTTPGNRTYSVPCDMTPPPSSS--KGQTTPSSKARQARTPT 541
+++D + K ++Q R PP K TP + R + P
Sbjct: 21 KITDHFVRIPKSEDKRKEQCEVRHQRAERKIPKYVPPNLPPDKKWLGTPIEEMR--KMPR 78
Query: 542 SSKA-PPTTPSSSKTIL----------PATPSSSKASRKSAPPAITTPCSSKSLRSGSDS 590
P PS+S T+ P + + PCS ++L D
Sbjct: 79 CGVRLPLLRPSASHTVTVRVDLLRAGEVPKPFPTHYKDLWDNKHVKMPCSEQNLYPVEDE 138
Query: 591 QQLQTITAEYIIYHAIISRRLQT 613
+T + + + + +
Sbjct: 139 NGERTAGSRWELIQTALLNKFTR 161
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein,
protein binding; 2.80A {Homo sapiens}
Length = 306
Score = 30.2 bits (68), Expect = 2.4
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 12 KRKRSTSNENTENDINLKDKRLRQDEEALAAERKPLSELITRVSLSSPGSTSSEGHDPST 71
S + N + R R DE L +E +I ++S T S PS
Sbjct: 21 DTYERRSGTRSRGIPNERPTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSI 80
Query: 72 TVQ---------EEFGL 79
+ + E+ GL
Sbjct: 81 SYELHKKLLSVAEKHGL 97
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme,
structural genomics, protein structure initiative; HET:
SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Length = 220
Score = 29.3 bits (65), Expect = 3.4
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 88 DSCDSLSSHSSSWVTKLPPRPSPFPTLDWANEEDLW 123
DS D+ SWV + E+ W
Sbjct: 105 DSVDAWRKFFGSWVALHLTELPTI-FALFYGAENFW 139
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 29.1 bits (64), Expect = 3.6
Identities = 9/84 (10%), Positives = 24/84 (28%)
Query: 500 EQQPTTPGNRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPA 559
+ QP+ ++ + PP Q +S + + S + P
Sbjct: 3 QAQPSMASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQ 62
Query: 560 TPSSSKASRKSAPPAITTPCSSKS 583
+ + ++ P + +
Sbjct: 63 QGPNHSEPLSAELASVICPSLAYA 86
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 28.4 bits (63), Expect = 8.7
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 508 NRTYSVPCDMTPPPSSSKGQTTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKAS 567
+ + + P S + TPS A A + K + + L
Sbjct: 5 HHHHHHSSGLVPRGSHM-PKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVKSDM 63
Query: 568 RKSAP 572
K
Sbjct: 64 LKEKL 68
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase;
cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A
{Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A*
3qhm_A* 3qhn_A*
Length = 458
Score = 28.3 bits (62), Expect = 9.7
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 528 TTPSSKARQARTPTSSKAPPTTPSSSKTILPATPSSSKASRKSAPPAITT 577
TT ++ S+ I TP+ S S+K PAI
Sbjct: 395 TTIWEDKYNNLKRLMDSCSKSSSSTQSVIRSTTPTKSNTSKKICGPAILI 444
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.395
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,519,143
Number of extensions: 612189
Number of successful extensions: 1352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1266
Number of HSP's successfully gapped: 83
Length of query: 712
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 612
Effective length of database: 3,909,693
Effective search space: 2392732116
Effective search space used: 2392732116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.8 bits)