RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16012
(712 letters)
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 117 bits (295), Expect = 1e-31
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
RT+LL W+ +CE + L + F L++ +DRYL K+ LQ IG A ++I +K+
Sbjct: 31 RTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKK--QGTKKTLQKIGAACVLIGSKIR 88
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNI 341
+ P VS Y++ ++ ++++ E +IL L+W+
Sbjct: 89 TVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDT 126
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 130
Score = 115 bits (291), Expect = 4e-31
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 20/147 (13%)
Query: 343 PVTAHYWLNVFLQVVYHRSSRCHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSV 402
P+T WLNV++QV Y + P + + ++ Q LLDLC LD+ CL + Y +
Sbjct: 1 PLTIVSWLNVYMQVAYLNDLH----EVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGI 56
Query: 403 LATTAIYLVCSKELACMISGLRLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPG 462
LA +A+Y S EL +SG + +E+C++WM + +++ E
Sbjct: 57 LAASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRET--------------GSS 102
Query: 463 PLRH--NNVFDYAYSYHKHSVSMELSD 487
L+H + A++ H S++L D
Sbjct: 103 KLKHFRGVADEDAHNIQTHRDSLDLLD 129
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68
[TaxId: 33708]}
Length = 141
Score = 111 bits (280), Expect = 1e-29
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R VL W+ VC+ F L + +D + + ++ Q AL IA KV
Sbjct: 44 RKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLST--RIDRENYQSTAAVALHIAGKVR 101
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNI 341
P K + AY+ GA ++ +L+ E+ L L W
Sbjct: 102 AYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVA 139
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 110 bits (277), Expect = 3e-29
Identities = 59/99 (59%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R +LLDWL EVCEVY LHRETFYL D+ DRY++T V K LQLIG+++L IAAK+E
Sbjct: 43 RAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQ-ENVVKTLLQLIGISSLFIAAKLE 101
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNIT 342
EIYPPK+ +AYVTDGACS +IL+ E+ I+ L+W ++
Sbjct: 102 EIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS 140
Score = 43.8 bits (103), Expect = 8e-06
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 109 SPFPTLDWANEEDLWDLLCAKDQDSLSLRDPHMLDRHPSIVPRMRTPVF-WIITGLSLKM 167
SP P L WAN E++W ++ +++ LRD H L++HP + P+MR + W++ ++
Sbjct: 1 SPLPVLSWANREEVWKIM--LNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLME--VCEV 56
Query: 168 FMMYEYRLYCVNNYF 182
+ ++ Y ++F
Sbjct: 57 YKLHRETFYLAQDFF 71
Score = 28.4 bits (63), Expect = 1.4
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 626 KDQDSLSLRDPHMLDRHPSIVPRMRTLSVSYSLFLDHVPRLPSQICHVM 674
+++ LRD H L++HP + P+MR + + + + + V +L + ++
Sbjct: 19 LNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLA 67
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 128
Score = 106 bits (265), Expect = 9e-28
Identities = 43/99 (43%), Positives = 69/99 (69%), Gaps = 2/99 (2%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R +L+DWL EV E Y L ET +L ++YIDR+LS+ V + +LQL+G AA+++A+K E
Sbjct: 31 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSM--SVLRGKLQLVGTAAMLLASKFE 88
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNIT 342
EIYPP+V+++ Y+TD + + +L E +L VL +++
Sbjct: 89 EIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLA 127
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 105 bits (262), Expect = 3e-27
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R +L W+ VC+ Y L L ++ +DR L V K+ Q G A L++A+K+
Sbjct: 36 RKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK--QVSKEHFQKTGSACLLVASKLR 93
Query: 304 EIYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNI 341
+ P S Y + S Q+++ E +L L W
Sbjct: 94 SLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRT 131
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 144
Score = 81.9 bits (202), Expect = 5e-19
Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R ++ +V LH +T I Y R+ ++ + + G L +A KVE
Sbjct: 37 RREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSF--KQFPRYVTGACCLFLAGKVE 94
Query: 304 E----------IYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNIT 342
E ++D + G ++++ E +L +++++
Sbjct: 95 ETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQ 143
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 151
Score = 75.0 bits (184), Expect = 2e-16
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 10/106 (9%)
Query: 244 RTVLLDWLSEVCEVYTLH--RETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAK 301
L E C V+ R Y R+ N V + ++I + +A K
Sbjct: 47 CKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNN--SVMEYHPRIIMLTCAFLACK 104
Query: 302 VEEIYPPKVSD-----YAYVTDGACSSQDILSTEMNILAVLEWNIT 342
V+E + + + IL E+ ++ L +++
Sbjct: 105 VDE-FNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLI 149
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 143
Score = 74.3 bits (182), Expect = 3e-16
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 244 RTVLLDWLSEVCEVYTLHRETFYLTIDYIDRYLSTNANIVPKQQLQLIGVAALMIAAKVE 303
R + + E+ + + + T I Y+ R+ + K +I AL +AAKVE
Sbjct: 31 RQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMH--HSFTKFNKNIISSTALFLAAKVE 88
Query: 304 E---------------IYPPKVSDYAYVTDGACSSQDILSTEMNILAVLEWNIT 342
E ++P + +++++ E +L L + IT
Sbjct: 89 EQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEIT 142
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 29.4 bits (66), Expect = 0.51
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 385 LLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGLRLESLEDCIEWMNIY 438
+ HL CL Y +V+A I+ LAC S + D W
Sbjct: 28 ATNSLHLTTFCLQYKPTVIACVCIH------LACKWSNWEIPVSTDGKHWWEYV 75
>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 27.5 bits (60), Expect = 4.3
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 1/118 (0%)
Query: 364 CHNLGFIYPAFSRTLYTQCIRLLDLCHLDIRCLNYSYSVLATTAIYLVCSKELACMISGL 423
C +G + A + C ++ + S S + L + + +
Sbjct: 24 CAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWAS 83
Query: 424 RLESLEDCIEWMNIYWVILCEKSPGTDYCDSDSNELPPGPLRHNNVFDYAYSYHKHSV 481
E + E M + + S++ + P Y K S
Sbjct: 84 MGEE-DKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSR 140
>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione
synthetase ATP-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 27.5 bits (61), Expect = 5.8
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 554 KTILPATPSSSKAS-----RKSAPPAITTPCSSKSLRSGSDSQQLQTITAEYIIYHAIIS 608
L S + + K P LR GS ++ +Q I+ E I+ +
Sbjct: 276 VQALKQLKDSEERASYILMEKIEPEPFENCL----LRPGSPARVVQCIS-ELGIFGVYVR 330
Query: 609 RRLQTKISRTAFYMMCAKDQDS 630
+ +++ +++ K +
Sbjct: 331 QEKTLVMNKHVGHLLRTKAIEH 352
>d1y1oa_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related
factor A (PrfA) {Bacillus stearothermophilus [TaxId:
1422]}
Length = 168
Score = 26.6 bits (59), Expect = 6.7
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 238 QVKYLPRTVLLDWLSEVCEVYTLHRETFYLT----IDYIDRYLSTNANIVPKQQLQLIGV 293
Q++++ + V + ++L ET+ L I + ++ + +PKQ+++ G
Sbjct: 88 QIRHMEQVVAHGGICFAILRFSLLNETYLLDASHLIAWWNKQEAGGRKSIPKQEIERHGH 147
Query: 294 AALMIAAKVEEIYPPKVSDYAYVTD 318
+ Y P++ DY V D
Sbjct: 148 -------SIPLGYQPRL-DYISVVD 164
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 27.5 bits (60), Expect = 6.9
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 654 VSYSLFLDHVPRLPSQICHVMGVLTPDIKDPLI 686
V + F+ + ++ +C G L D + L+
Sbjct: 89 VFHVGFIAKIKKVCECVCMHCGKLLLDEHNELM 121
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 26.6 bits (58), Expect = 8.0
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 539 TPTSSKAPPTTPSSSKTILPATPSSSKASRKSAPPAITTPCSSKSLRSGSDSQQLQT 595
T P TTP+ +K ++ ++ P+ ++ S S+ S S+ +T
Sbjct: 97 KVTKIGFPSTTPAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRT 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.395
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,581,230
Number of extensions: 119024
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 20
Length of query: 712
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 620
Effective length of database: 1,144,436
Effective search space: 709550320
Effective search space used: 709550320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)