Query psy16017
Match_columns 85
No_of_seqs 76 out of 78
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 18:48:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kvr_A Ubiquitin carboxyl-term 77.2 3.5 0.00012 27.7 4.3 27 59-85 61-87 (130)
2 1wx7_A Ubiquilin 3; ubiquitin- 73.7 5 0.00017 24.8 4.1 32 54-85 27-58 (106)
3 3v6c_B Ubiquitin; structural g 72.6 6 0.0002 23.5 4.1 28 58-85 32-59 (91)
4 2dzi_A Ubiquitin-like protein 72.4 2.8 9.7E-05 23.8 2.5 28 58-85 22-49 (81)
5 1v86_A DNA segment, CHR 7, way 71.2 11 0.00038 23.0 5.3 43 43-85 16-58 (95)
6 1ndd_A NEDD8, protein (ubiquit 71.0 2.1 7.3E-05 23.8 1.7 26 59-84 16-41 (76)
7 3dbh_I NEDD8; cell cycle, acti 70.6 12 0.0004 21.6 5.0 28 58-85 27-54 (88)
8 3a9j_A Ubiquitin; protein comp 69.6 2.4 8.2E-05 23.6 1.7 26 59-84 16-41 (76)
9 2uyz_B Small ubiquitin-related 68.8 2.1 7.2E-05 24.6 1.4 27 59-85 19-45 (79)
10 3n3k_B Ubiquitin; hydrolase, p 68.8 2.5 8.5E-05 24.3 1.7 26 59-84 19-44 (85)
11 4a3p_A Ubiquitin carboxyl-term 68.1 2.8 9.7E-05 29.6 2.2 29 57-85 143-172 (217)
12 1wh3_A 59 kDa 2'-5'-oligoadeny 68.1 3.4 0.00012 24.1 2.2 27 58-84 22-48 (87)
13 3mtn_B UBA80, ubcep1, ubiquiti 67.1 3.2 0.00011 23.7 2.0 27 59-85 19-45 (85)
14 1sif_A Ubiquitin; hydrophobic 66.3 3.4 0.00011 24.8 2.0 27 59-85 25-51 (88)
15 2bwf_A Ubiquitin-like protein 65.7 3.1 0.00011 23.4 1.7 26 59-84 19-44 (77)
16 1wx8_A Riken cDNA 4931431F19; 64.8 5.3 0.00018 23.9 2.7 28 58-85 31-58 (96)
17 3jyu_A Ubiquitin carboxyl-term 64.3 3.7 0.00013 29.4 2.2 29 57-85 155-184 (231)
18 1wf9_A NPL4 family protein; be 64.2 4.6 0.00016 25.4 2.5 24 62-85 26-49 (107)
19 1v6e_A Cytoskeleton-associated 64.0 5.6 0.00019 24.2 2.8 29 57-85 22-50 (95)
20 2kk8_A Uncharacterized protein 63.9 3.4 0.00012 25.0 1.7 27 58-84 25-51 (84)
21 3k9o_B Ubiquitin, UBB+1; E2-25 63.8 3.4 0.00012 24.5 1.7 26 59-84 17-42 (96)
22 2pjh_A Protein NPL4, nuclear p 61.9 6.1 0.00021 24.1 2.6 24 60-83 20-43 (80)
23 3phx_B Ubiquitin-like protein 61.6 4.1 0.00014 23.4 1.7 26 59-84 20-45 (79)
24 2faz_A Ubiquitin-like containi 60.7 4 0.00014 23.3 1.6 25 60-84 21-45 (78)
25 1v5o_A 1700011N24RIK protein; 60.5 6.1 0.00021 24.4 2.5 27 59-85 27-53 (102)
26 3m63_B Ubiquitin domain-contai 60.2 7.3 0.00025 24.3 2.8 28 58-85 42-69 (101)
27 1yx5_B Ubiquitin; proteasome, 60.0 4.4 0.00015 24.5 1.7 26 59-84 16-41 (98)
28 2hj8_A Interferon-induced 17 k 59.9 5.2 0.00018 23.8 2.0 26 59-84 20-45 (88)
29 1uh6_A Ubiquitin-like 5; beta- 59.8 27 0.00092 22.5 5.6 27 59-85 44-70 (100)
30 2kd0_A LRR repeats and ubiquit 59.7 6.6 0.00022 23.5 2.5 27 59-85 27-53 (85)
31 1wy8_A NP95-like ring finger p 59.4 15 0.00052 21.3 4.0 25 60-84 26-50 (89)
32 1wyw_B Ubiquitin-like protein 59.0 4 0.00014 25.0 1.4 28 58-85 36-63 (97)
33 2l7r_A Ubiquitin-like protein 58.8 5.6 0.00019 24.2 2.0 27 59-85 33-59 (93)
34 1ttn_A DC-UBP, dendritic cell- 58.6 7.7 0.00026 24.1 2.7 43 43-85 22-65 (106)
35 4dwf_A HLA-B-associated transc 57.0 4.7 0.00016 23.7 1.5 26 59-84 21-46 (90)
36 2kan_A Uncharacterized protein 57.0 6.5 0.00022 24.1 2.1 30 55-84 26-55 (94)
37 4fbj_B NEDD8; effector-HOST ta 56.9 6.2 0.00021 23.6 2.0 27 59-85 16-42 (88)
38 3lsg_A Two-component response 56.2 3.4 0.00012 24.7 0.7 25 61-85 78-102 (103)
39 4hcn_B Polyubiquitin, ubiquiti 52.5 7.9 0.00027 23.5 2.0 28 58-85 37-64 (98)
40 4eew_A Large proline-rich prot 51.8 6.5 0.00022 23.0 1.5 27 58-84 32-58 (88)
41 3b1l_X E3 ubiquitin-protein li 56.8 3.1 0.00011 23.5 0.0 27 59-85 16-42 (76)
42 2klc_A Ubiquilin-1; ubiquitin- 50.8 7.5 0.00026 24.1 1.7 27 58-84 39-65 (101)
43 2k9s_A Arabinose operon regula 50.3 3.4 0.00012 25.0 0.0 25 61-85 79-103 (107)
44 2kzr_A Ubiquitin thioesterase 50.0 13 0.00044 22.1 2.6 24 61-84 18-41 (86)
45 1wxv_A BAG-family molecular ch 49.8 9.5 0.00033 22.7 2.0 22 64-85 32-53 (92)
46 2kdi_A Ubiquitin, vacuolar pro 49.7 7.9 0.00027 24.6 1.7 26 59-84 25-50 (114)
47 1fc3_A SPO0A; response regulat 49.2 2.4 8.1E-05 28.7 -0.9 19 66-84 47-65 (120)
48 1wgd_A Homocysteine-responsive 48.7 11 0.00039 22.4 2.3 24 62-85 28-53 (93)
49 1wju_A NEDD8 ultimate buster-1 48.4 9.6 0.00033 24.7 2.0 26 60-85 36-61 (100)
50 1j8c_A Ubiquitin-like protein 48.2 52 0.0018 21.2 6.2 29 57-85 45-73 (125)
51 1yqb_A Ubiquilin 3; structural 48.2 16 0.00053 22.6 2.9 31 54-84 32-62 (100)
52 3oio_A Transcriptional regulat 48.0 3.9 0.00013 24.9 0.0 25 61-85 82-106 (113)
53 3oou_A LIN2118 protein; protei 47.9 3.9 0.00013 24.7 0.0 25 61-85 80-104 (108)
54 3m62_B UV excision repair prot 47.7 9.3 0.00032 23.8 1.8 27 59-85 17-43 (106)
55 1we6_A Splicing factor, putati 46.6 14 0.00048 22.9 2.5 27 59-85 46-73 (111)
56 1wgg_A Ubiquitin carboxyl-term 46.2 17 0.00058 22.3 2.8 27 59-85 23-49 (96)
57 1v5t_A 8430435I17RIK protein; 46.2 14 0.00048 22.2 2.4 26 59-84 23-48 (90)
58 3b08_A Polyubiquitin-C, ubiqui 46.1 9.8 0.00033 23.8 1.7 27 58-84 15-41 (152)
59 1otf_A 4-oxalocrotonate tautom 45.9 11 0.00037 20.3 1.7 18 67-84 21-38 (62)
60 3mn2_A Probable ARAC family tr 45.5 4.5 0.00015 24.4 0.0 25 61-85 79-103 (108)
61 2ojr_A Ubiquitin; lanthide-bin 44.1 14 0.00047 23.1 2.2 27 58-84 50-76 (111)
62 3dml_A Putative uncharacterize 43.9 12 0.00042 24.3 2.0 33 41-76 76-108 (116)
63 3m21_A Probable tautomerase HP 43.2 12 0.00042 21.1 1.7 19 66-84 23-41 (67)
64 1t0y_A Tubulin folding cofacto 42.6 13 0.00045 23.8 2.0 28 57-84 21-48 (122)
65 2x4k_A 4-oxalocrotonate tautom 42.3 14 0.00047 19.7 1.7 19 66-84 23-41 (63)
66 1bl0_A Protein (multiple antib 41.7 5.6 0.00019 24.9 0.0 25 61-85 86-110 (129)
67 1we7_A SF3A1 protein; structur 41.4 16 0.00053 22.9 2.1 26 59-84 51-76 (115)
68 1uel_A HHR23B, UV excision rep 40.7 17 0.0006 21.8 2.2 26 59-84 16-44 (95)
69 3m20_A 4-oxalocrotonate tautom 40.5 16 0.00053 20.5 1.8 17 68-84 21-37 (62)
70 3ry0_A Putative tautomerase; o 40.2 15 0.00051 20.6 1.7 18 67-84 21-38 (65)
71 3mkl_A HTH-type transcriptiona 40.2 6.1 0.00021 24.4 0.0 25 61-85 81-105 (120)
72 2cx6_A Hypothetical protein YH 39.6 19 0.00063 22.5 2.3 21 61-81 9-29 (90)
73 3mb2_A 4-oxalocrotonate tautom 39.4 13 0.00045 21.4 1.4 18 67-84 22-39 (72)
74 2dzm_A FAS-associated factor 1 38.9 33 0.0011 21.8 3.4 41 44-84 9-49 (100)
75 2wyq_A HHR23A, UV excision rep 38.3 16 0.00055 20.9 1.7 27 58-84 20-49 (85)
76 3omt_A Uncharacterized protein 37.8 14 0.00049 20.3 1.4 17 68-84 51-67 (73)
77 3t76_A VANU, transcriptional r 37.8 14 0.00048 22.6 1.5 17 68-84 66-82 (88)
78 3ej9_A Alpha-subunit of trans- 36.4 18 0.00061 21.3 1.7 18 67-84 22-39 (76)
79 2ewt_A BLDD, putative DNA-bind 36.3 16 0.00054 19.7 1.4 17 68-84 53-69 (71)
80 2dzj_A Synaptic glycoprotein S 36.0 23 0.00077 21.6 2.2 27 59-85 29-56 (88)
81 1y7y_A C.AHDI; helix-turn-heli 36.0 16 0.00055 19.7 1.4 17 68-84 56-72 (74)
82 3u30_A Ubiquitin, linear DI-ub 36.0 21 0.00072 23.4 2.2 28 57-84 34-61 (172)
83 1wm3_A Ubiquitin-like protein 35.9 26 0.00091 20.3 2.4 27 59-85 17-43 (72)
84 2opa_A Probable tautomerase YW 35.9 20 0.00067 19.3 1.7 16 69-84 23-38 (61)
85 2za4_B Barstar; protein-protei 34.8 22 0.00075 21.8 2.0 20 61-80 9-28 (90)
86 3vdz_A Ubiquitin-40S ribosomal 34.2 19 0.00066 22.5 1.7 27 58-84 50-76 (111)
87 2ylm_A Ubiquitin carboxyl-term 34.2 15 0.00053 29.3 1.5 27 59-85 41-67 (530)
88 1x1m_A Ubiquitin-like protein 34.0 23 0.00078 21.9 2.0 20 64-83 45-66 (107)
89 3bs3_A Putative DNA-binding pr 34.0 18 0.00062 19.7 1.4 18 67-84 52-69 (76)
90 2es7_A Q8ZP25_salty, putative 33.6 32 0.0011 22.0 2.7 40 41-83 91-130 (142)
91 2kjr_A CG11242; UBL, ubiquitin 33.6 23 0.00079 22.1 2.0 29 56-84 30-58 (95)
92 3kz3_A Repressor protein CI; f 33.4 21 0.00072 20.1 1.6 17 68-84 55-71 (80)
93 4b6w_A Tubulin-specific chaper 33.2 17 0.00057 22.3 1.2 28 58-85 19-46 (86)
94 2lxa_A Ubiquitin-like protein 32.6 22 0.00075 21.9 1.7 24 62-85 22-46 (87)
95 2kj6_A Tubulin folding cofacto 32.0 28 0.00095 21.9 2.2 29 56-84 29-57 (97)
96 3a4r_A Nfatc2-interacting prot 31.7 82 0.0028 18.6 4.4 43 43-85 6-50 (79)
97 3gnj_A Thioredoxin domain prot 31.5 29 0.00098 19.5 2.0 33 42-77 77-109 (111)
98 2k8h_A Small ubiquitin protein 30.7 1.1E+02 0.0037 19.7 6.7 42 44-85 26-68 (110)
99 1gyx_A YDCE, B1461, hypothetic 30.6 26 0.00087 20.3 1.7 18 67-84 22-39 (76)
100 3abf_A 4-oxalocrotonate tautom 30.4 23 0.0008 19.1 1.4 18 67-84 22-39 (64)
101 3rt3_B Ubiquitin-like protein 30.1 24 0.00083 22.6 1.7 26 59-84 97-122 (159)
102 3rt3_B Ubiquitin-like protein 29.7 25 0.00085 22.6 1.7 26 59-84 18-43 (159)
103 1wz0_A Ubiquitin-like protein 29.4 47 0.0016 21.1 3.0 42 44-85 24-66 (104)
104 2io1_B Small ubiquitin-related 29.4 23 0.00078 22.0 1.4 27 59-85 23-49 (94)
105 1x57_A Endothelial differentia 28.5 33 0.0011 19.6 2.0 17 68-84 56-72 (91)
106 2io0_B Small ubiquitin-related 27.4 32 0.0011 21.3 1.9 27 59-85 21-47 (91)
107 4dbg_A Ranbp-type and C3HC4-ty 27.4 29 0.00099 22.6 1.7 28 57-84 40-67 (105)
108 3mlc_A FG41 malonate semialdeh 27.0 31 0.0011 22.5 1.8 20 66-85 20-39 (136)
109 1mww_A Hypothetical protein HI 26.7 43 0.0015 20.9 2.4 19 66-84 19-37 (128)
110 3plu_A Ubiquitin-like modifier 26.4 28 0.00095 22.5 1.5 27 59-85 37-63 (93)
111 3u30_A Ubiquitin, linear DI-ub 25.8 46 0.0016 21.7 2.5 27 59-85 112-138 (172)
112 4euy_A Uncharacterized protein 25.8 39 0.0013 19.2 1.9 33 42-77 72-104 (105)
113 3u5e_m 60S ribosomal protein L 25.2 15 0.00052 23.5 0.0 27 59-85 16-42 (128)
114 2r1j_L Repressor protein C2; p 24.4 16 0.00055 19.3 0.0 16 68-83 48-63 (68)
115 2daf_A FLJ35834 protein; hypot 24.3 33 0.0011 23.3 1.6 44 42-85 13-58 (118)
116 3l0w_B Monoubiquitinated proli 24.2 44 0.0015 22.6 2.2 27 59-85 16-42 (169)
117 1oey_A P67-PHOX, neutrophil cy 24.0 42 0.0014 21.3 2.0 21 64-84 24-44 (83)
118 1lmb_3 Protein (lambda repress 23.8 36 0.0012 19.3 1.5 17 68-84 60-76 (92)
119 3qwg_A ESX-1 secretion-associa 23.5 32 0.0011 22.2 1.3 16 68-83 60-75 (123)
120 1wjn_A Tubulin-folding protein 23.4 48 0.0016 19.9 2.1 27 58-84 27-53 (97)
121 3s8q_A R-M controller protein; 23.1 17 0.00059 20.4 -0.0 16 68-83 54-69 (82)
122 2xi8_A Putative transcription 23.0 18 0.0006 19.0 0.0 16 68-83 44-59 (66)
123 2ofy_A Putative XRE-family tra 22.8 18 0.0006 20.5 -0.0 16 68-83 58-73 (86)
124 3d22_A TRXH4, thioredoxin H-ty 22.7 71 0.0024 19.0 2.7 36 42-81 100-135 (139)
125 1vd2_A Protein kinase C, IOTA 22.6 52 0.0018 21.0 2.2 19 65-83 27-45 (89)
126 3p2a_A Thioredoxin 2, putative 22.4 69 0.0024 19.4 2.7 37 42-81 110-146 (148)
127 3r1f_A ESX-1 secretion-associa 22.0 35 0.0012 22.2 1.3 16 68-83 62-77 (135)
128 2d07_B Ubiquitin-like protein 22.0 39 0.0013 20.8 1.5 42 44-85 17-59 (93)
129 3lfp_A CSP231I C protein; tran 21.9 38 0.0013 19.8 1.4 17 68-84 48-64 (98)
130 3q3f_A Ribonuclease/ubiquitin 21.6 59 0.002 22.9 2.5 28 58-85 120-147 (189)
131 3qq6_A HTH-type transcriptiona 21.4 19 0.00066 20.6 -0.0 16 68-83 54-69 (78)
132 3u5c_f 40S ribosomal protein S 21.4 20 0.00068 24.4 0.0 27 59-85 16-42 (152)
133 2d9m_A Zinc finger CCCH-type d 21.3 24 0.00082 22.1 0.4 8 48-55 36-43 (69)
134 3die_A Thioredoxin, TRX; elect 21.0 57 0.0019 18.0 1.9 32 42-76 74-105 (106)
135 1oaz_A Thioredoxin 1; immune s 20.9 68 0.0023 19.2 2.4 32 42-76 90-121 (123)
136 3b7h_A Prophage LP1 protein 11 20.9 20 0.00069 19.6 -0.0 17 68-84 51-67 (78)
137 2aal_A Malonate semialdehyde d 20.7 61 0.0021 20.3 2.2 19 66-84 21-39 (131)
138 2eel_A Cell death activator CI 20.2 48 0.0016 21.5 1.7 18 64-81 28-45 (91)
139 3gbg_A TCP pilus virulence reg 20.0 22 0.00076 24.1 0.0 24 61-84 243-266 (276)
No 1
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=77.19 E-value=3.5 Score=27.72 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.0
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
+|-.=+++.+|++.||+.||++++.+|
T Consensus 61 rv~k~~~~~~~~~~va~~lg~~~~~~R 87 (130)
T 2kvr_A 61 KVLKNSSLAEFVQSLSQTMGFPQDQIR 87 (130)
T ss_dssp ECCTTSBHHHHHHHHHHHHCCCGGGCE
T ss_pred EEeccCcHHHHHHHHHHHhCCCcccEE
Confidence 677778999999999999999998775
No 2
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=73.73 E-value=5 Score=24.78 Aligned_cols=32 Identities=6% Similarity=0.146 Sum_probs=25.1
Q ss_pred CCCceeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 54 GSPTGLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 54 GSptg~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
|.-+=.|+.-.+|.+|-++|++.++|++++.|
T Consensus 27 g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qr 58 (106)
T 1wx7_A 27 DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLV 58 (106)
T ss_dssp CEEEEEEETTCCHHHHHHHHHHHHTCCTTTEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHHCcChhhEE
Confidence 33344567778999999999999999987643
No 3
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=72.61 E-value=6 Score=23.55 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=24.1
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
=.|+.-.+|.+|-++|++.+++++++.|
T Consensus 32 l~v~~~~TV~~LK~~I~~~~gip~~~qr 59 (91)
T 3v6c_B 32 LEVEPSDTIENVKAKIQDKEGIPPDQQR 59 (91)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCE
T ss_pred EEECCCCCHHHHHHHHHhhhCCChhhEE
Confidence 3577888999999999999999988653
No 4
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.39 E-value=2.8 Score=23.83 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=23.7
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
=.|+.-.+|.+|-++|++..++++++.|
T Consensus 22 ~~v~~~~tV~~LK~~i~~~~~i~~~~qr 49 (81)
T 2dzi_A 22 LQVPEDELVSTLKQLVSEKLNVPVRQQR 49 (81)
T ss_dssp EEECSSCBHHHHHHHHHHHTCCCTTTCE
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHEE
Confidence 4567778999999999999999988653
No 5
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.16 E-value=11 Score=22.99 Aligned_cols=43 Identities=16% Similarity=0.027 Sum_probs=29.3
Q ss_pred CceeeeeecccCCCceeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 43 PKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 43 p~LvFh~QLAHGSptg~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
..+.+...+.-..-+=.|+.-.+|.+|-++|++..+||+++-|
T Consensus 16 ~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~Qr 58 (95)
T 1v86_A 16 ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQK 58 (95)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCC
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeE
Confidence 3454555432112234567778999999999999999998754
No 6
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=70.98 E-value=2.1 Score=23.83 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.1
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++..++|+++.
T Consensus 16 ~v~~~~tv~~lK~~i~~~~~i~~~~q 41 (76)
T 1ndd_A 16 DIEPTDKVERIKERVEEKEGIPPQQQ 41 (76)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCChHHHHHHHHHHHHCcChHHE
Confidence 45666899999999999999998764
No 7
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=70.60 E-value=12 Score=21.56 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=24.0
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
=.|+.-.+|.+|-++|++.+++|+++.|
T Consensus 27 ~~v~~~~tV~~lK~~i~~~~gip~~~qr 54 (88)
T 3dbh_I 27 IDIEPTDKVERIKERVEEKEGIPPQQQR 54 (88)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCC
T ss_pred EEECCCCCHHHHHHHHHHHHCcCHHHEE
Confidence 3577888999999999999999998754
No 8
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=69.56 E-value=2.4 Score=23.61 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.0
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++.+++++++.
T Consensus 16 ~v~~~~tv~~lK~~i~~~~~i~~~~q 41 (76)
T 3a9j_A 16 EVEPSDTIENVKAKIQDKEGIPPDQQ 41 (76)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCCcHHHHHHHHHHHHCcCHHHe
Confidence 45566899999999999999998764
No 9
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=68.81 E-value=2.1 Score=24.63 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=22.8
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-++|.+|.++|++..++|+++.|
T Consensus 19 ~v~~~~tv~~lk~~i~~~~gi~~~~qr 45 (79)
T 2uyz_B 19 KVKMTTHLKKLKESYCQRQGVPMNSLR 45 (79)
T ss_dssp EEETTSCTHHHHHHHHHHHTCCGGGEE
T ss_pred EECCCChHHHHHHHHHHHHCCCcccEE
Confidence 456678999999999999999988753
No 10
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=68.79 E-value=2.5 Score=24.31 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.7
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++.+++|+++.
T Consensus 19 ~v~~~~tV~~lK~~i~~~~~ip~~~q 44 (85)
T 3n3k_B 19 EVEPSDTIENVKAKIQDKEGIPPDQQ 44 (85)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCCcHHHHHHHHHHHHCCCHHHE
Confidence 46677899999999999999999864
No 11
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=68.15 E-value=2.8 Score=29.64 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.7
Q ss_pred ceeccCccchHHHHHhhhhhhcCCCC-cCC
Q psy16017 57 TGLISGFSNVRELYQKIAECYEFPAE-ENR 85 (85)
Q Consensus 57 tg~I~gFsnvkELY~kIae~f~i~p~-e~~ 85 (85)
+..++-..++++|++.+.+.|+|+++ ++|
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~R 172 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETR 172 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEE
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceE
Confidence 47789999999999999999999987 565
No 12
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=68.12 E-value=3.4 Score=24.08 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=23.3
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
=.|+.-.+|.+|-++|++..+|++++.
T Consensus 22 ~~v~~~~tV~~lK~~i~~~~gi~~~~q 48 (87)
T 1wh3_A 22 YAINPNSFILGLKQQIEDQQGLPKKQQ 48 (87)
T ss_dssp EEECSSSBHHHHHHHHHHHTCCCTTTE
T ss_pred EEeCCCChHHHHHHHHHHHhCCChHHE
Confidence 456777899999999999999999864
No 13
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=67.14 E-value=3.2 Score=23.71 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.7
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|-++|++.+++|+++.|
T Consensus 19 ~v~~~~tV~~lK~~i~~~~~i~~~~qr 45 (85)
T 3mtn_B 19 EVEPSDTIENVKAKIQDKEGIPPDQQR 45 (85)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGCE
T ss_pred EECCCCCHHHHHHHHHHHHCcChHHEE
Confidence 456678999999999999999988653
No 14
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=66.27 E-value=3.4 Score=24.79 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=22.4
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|-++|++..++|+++.|
T Consensus 25 ~v~~~~TV~~LK~~I~~~~gip~~~qr 51 (88)
T 1sif_A 25 EMEPSDTIENLKAKIQDKEGIPPDQQR 51 (88)
T ss_dssp ECCTTSBHHHHHHHHHHHHCCCGGGCE
T ss_pred EECCCChHHHHHHHHHHHHCcChhhEE
Confidence 355668999999999999999987653
No 15
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=65.66 E-value=3.1 Score=23.42 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.1
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++..++|+++.
T Consensus 19 ~v~~~~tV~~LK~~i~~~~~i~~~~q 44 (77)
T 2bwf_A 19 NVAPESTVLQFKEAINKANGIPVANQ 44 (77)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCCcHHHHHHHHHHHhCCCHHHE
Confidence 45666899999999999999998764
No 16
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=64.75 E-value=5.3 Score=23.93 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.9
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
=.|+.-.+|.+|-++|++..+|++++.|
T Consensus 31 ~~v~~~~TV~~LK~~I~~~~gip~~~qr 58 (96)
T 1wx8_A 31 FFLAENSNVRRFKKQISKYLHCNADRLV 58 (96)
T ss_dssp EEEETTCCHHHHHHHHHHHTCSCTTTBC
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEE
Confidence 4567778999999999999999998754
No 17
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=64.29 E-value=3.7 Score=29.37 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=25.1
Q ss_pred ceeccCccchHHHHHhhhhhhcCCCC-cCC
Q psy16017 57 TGLISGFSNVRELYQKIAECYEFPAE-ENR 85 (85)
Q Consensus 57 tg~I~gFsnvkELY~kIae~f~i~p~-e~~ 85 (85)
+..++...++++|++.+.+.|+|+++ ++|
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~R 184 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAERETR 184 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTTSCEE
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCCCeEE
Confidence 46678889999999999999999997 565
No 18
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=64.21 E-value=4.6 Score=25.37 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.4
Q ss_pred CccchHHHHHhhhhhhcCCCCcCC
Q psy16017 62 GFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 62 gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.=.+|.+|.++|++.++|++++-|
T Consensus 26 ~~~Tv~~LK~kI~~~~gip~~~Qr 49 (107)
T 1wf9_A 26 PHITVSQLKTLIQDQLQIPIHNQT 49 (107)
T ss_dssp TTSBHHHHHHHHHHHSCCCTTTCC
T ss_pred CCCcHHHHHHHHHHHhCcCcccCE
Confidence 446999999999999999987643
No 19
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=64.04 E-value=5.6 Score=24.25 Aligned_cols=29 Identities=17% Similarity=0.005 Sum_probs=24.6
Q ss_pred ceeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 57 TGLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 57 tg~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
+-+|+.-.+|.+|-++|++..+||+++-|
T Consensus 22 ~~~v~~~~TV~~lK~ki~~~~gip~~~qr 50 (95)
T 1v6e_A 22 EKRYSRSLTIAEFKCKLELVVGSPASCME 50 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHTCSCTTTCB
T ss_pred EEEcCccCHHHHHHHHHHHHHCCCHHHeE
Confidence 34677778999999999999999998754
No 20
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=63.90 E-value=3.4 Score=24.96 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=23.0
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
=.|+.-.+|.+|-++|++..+||+++-
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~Q 51 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSKQ 51 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHE
Confidence 356677899999999999999998764
No 21
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=63.83 E-value=3.4 Score=24.55 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.4
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++.++|++++.
T Consensus 17 ~v~~~~TV~~LK~~i~~~~gip~~~q 42 (96)
T 3k9o_B 17 EVEPSDTIENVKAKIQDKEGIPPDQQ 42 (96)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCCCHHHHHHHHHhhhCCChhHE
Confidence 46677899999999999999998764
No 22
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=61.92 E-value=6.1 Score=24.06 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=19.6
Q ss_pred ccCccchHHHHHhhhhhhcCCCCc
Q psy16017 60 ISGFSNVRELYQKIAECYEFPAEE 83 (85)
Q Consensus 60 I~gFsnvkELY~kIae~f~i~p~e 83 (85)
|+.=+++.+|+++|++.++++.+.
T Consensus 20 v~~~~t~~~L~~~I~~~~~i~~~~ 43 (80)
T 2pjh_A 20 ATKRETAATFLKKVAKEFGFQNNG 43 (80)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCTTT
T ss_pred cCCcChHHHHHHHHHHHcCCCCCc
Confidence 345578999999999999988653
No 23
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=61.60 E-value=4.1 Score=23.38 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=22.5
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|=++|++.++||+++.
T Consensus 20 ~v~~~~tV~~lK~~i~~~~gip~~~q 45 (79)
T 3phx_B 20 EVRLTQTVAHLKQQVSGLEGVQDDLF 45 (79)
T ss_dssp EECTTSBHHHHHHHHHHHHTCCGGGE
T ss_pred EECCcChHHHHHHHHHhhcCCCHHHE
Confidence 46677899999999999999998864
No 24
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=60.68 E-value=4 Score=23.26 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.2
Q ss_pred ccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 60 ISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 60 I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
|+.-.+|.+|-++|++..++|+++.
T Consensus 21 v~~~~tv~~lK~~i~~~~gip~~~q 45 (78)
T 2faz_A 21 LSRLTKVEELRRKIQELFHVEPGLQ 45 (78)
T ss_dssp ECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhE
Confidence 6777899999999999999998764
No 25
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=60.50 E-value=6.1 Score=24.39 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=23.3
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|-++|++.++|++++.|
T Consensus 27 ~v~~~~TV~~LK~~I~~~~gip~~~qr 53 (102)
T 1v5o_A 27 QVNPDFELSNFRVLCELESGVPAEEAQ 53 (102)
T ss_dssp EECTTCBHHHHHHHHHHHTCCCGGGBC
T ss_pred EcCCCCCHHHHHHHHHHHHCcChHHeE
Confidence 367778999999999999999998754
No 26
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=60.23 E-value=7.3 Score=24.26 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.1
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
=.|+.-.+|.+|-++|++.+++++++.|
T Consensus 42 l~v~~~~TV~~LK~~I~~~~gip~~~Qr 69 (101)
T 3m63_B 42 VNVAPESTVLQFKEAINKANGIPVANQR 69 (101)
T ss_dssp BCCCTTSBHHHHHHHHHHHHSCCSTTCC
T ss_pred EEeCCCCCHHHHHHHHHHHHCcChHHEE
Confidence 3567788999999999999999998754
No 27
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=60.02 E-value=4.4 Score=24.47 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.1
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++..+|++++.
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gi~~~~q 41 (98)
T 1yx5_B 16 EVEPSDTIENVKAKIQDKEGIPPDQQ 41 (98)
T ss_dssp ECCTTCBHHHHHHHHHHHTCCCGGGE
T ss_pred EECCCCcHHHHHHHHHHHHCcChhhE
Confidence 45666899999999999999998764
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=59.90 E-value=5.2 Score=23.83 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=22.5
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++..+||+++.
T Consensus 20 ~v~~~~TV~~LK~~I~~~~gip~~~q 45 (88)
T 2hj8_A 20 EVRLTQTVAHLKQQVSGLEGVQDDLF 45 (88)
T ss_dssp EEESSSBHHHHHHHHHHHTCSCTTTE
T ss_pred EECCCCcHHHHHHHHHHHhCCChhHE
Confidence 45667899999999999999999864
No 29
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=59.83 E-value=27 Score=22.54 Aligned_cols=27 Identities=11% Similarity=-0.107 Sum_probs=23.5
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.=.+|.+|.++|++.++||+++.|
T Consensus 44 ev~p~dTV~~lK~~Ia~k~Gip~~qQr 70 (100)
T 1uh6_A 44 KCNTDDTIGDLKKLIAAQTGTRWNKIV 70 (100)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGCE
T ss_pred EeCCCCcHHHHHHHHHHHhCCCHHHEE
Confidence 466778999999999999999998864
No 30
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=59.71 E-value=6.6 Score=23.53 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=22.6
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|-++|++..+||+++.|
T Consensus 27 ~v~~~~TV~~LK~~I~~~~gip~~~qr 53 (85)
T 2kd0_A 27 SVSPDCTVKDLKSQLQPITNVLPRGQK 53 (85)
T ss_dssp EECTTSBHHHHHHHHHHHHCCCTTTCE
T ss_pred EECCCCcHHHHHHHHHHHHCcChHHEE
Confidence 455667999999999999999998653
No 31
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=59.37 E-value=15 Score=21.33 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=22.6
Q ss_pred ccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 60 ISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 60 I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
|+.-.+|.+|-++|++..+||+++.
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~q 50 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQ 50 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTE
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhE
Confidence 7778999999999999999998864
No 32
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=58.95 E-value=4 Score=25.01 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=23.9
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
=.|+.-++|.+|.++|++..+|++++.|
T Consensus 36 l~v~~~~tv~~lK~~i~~~~gip~~~qr 63 (97)
T 1wyw_B 36 FKVKMTTHLKKLKESYCQRQGVPMNSLR 63 (97)
T ss_dssp EEEETTSCTHHHHHHHHHHHTCCGGGEE
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhEE
Confidence 4577788999999999999999998754
No 33
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=58.77 E-value=5.6 Score=24.17 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.1
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|-++|++..+||+++.|
T Consensus 33 ~v~~~~TV~~LK~~I~~~~gip~~~qr 59 (93)
T 2l7r_A 33 EVTGQETVAQIKAHVASLEGIAPEDQV 59 (93)
T ss_dssp ECCSSCBHHHHHHHHHHHHTCCGGGCE
T ss_pred EeCCCCcHHHHHHHHHHHhCcChhHEE
Confidence 567778999999999999999988653
No 34
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.61 E-value=7.7 Score=24.07 Aligned_cols=43 Identities=9% Similarity=0.121 Sum_probs=30.0
Q ss_pred CceeeeeecccCC-CceeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 43 PKLIFHCQLAHGS-PTGLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 43 p~LvFh~QLAHGS-ptg~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
..+........|. -+=.|+.-.+|.+|-++|++..+|++++.|
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qr 65 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQR 65 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEE
Confidence 3444444433342 234677788999999999999999988753
No 35
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=57.00 E-value=4.7 Score=23.72 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.8
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++.++|++++.
T Consensus 21 ~v~~~~tV~~lK~~i~~~~gip~~~q 46 (90)
T 4dwf_A 21 IVGAQMNVKEFKEHIAASVSIPSEKQ 46 (90)
T ss_dssp EEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred EECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 56778899999999999999998764
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=56.98 E-value=6.5 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.069 Sum_probs=24.7
Q ss_pred CCceeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 55 SPTGLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 55 Sptg~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.-+=.|+.-.+|.+|-++|++..+||+++.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q 55 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRM 55 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHE
Confidence 334456777899999999999999998864
No 37
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=56.93 E-value=6.2 Score=23.57 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=22.7
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|=++|++.+++|+++.|
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gip~~~qr 42 (88)
T 4fbj_B 16 DIEPTDKVERIKERVEEKEGIPPQQQR 42 (88)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGCE
T ss_pred EECCCCCHHHHHHHHHHHHCcChhHEE
Confidence 456678999999999999999998653
No 38
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=56.24 E-value=3.4 Score=24.71 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=22.4
Q ss_pred cCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 61 SGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 61 ~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
-||+|..-++...-+.||++|.|.|
T Consensus 78 ~Gf~~~s~F~r~Fk~~~G~tP~~yR 102 (103)
T 3lsg_A 78 VGFEDVNYFITKFKKYYQITPKQYR 102 (103)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHHT
T ss_pred hCCCCHHHHHHHHHHHHCcCHHHHh
Confidence 4899999999999999999998865
No 39
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=52.54 E-value=7.9 Score=23.53 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=23.8
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
=.|+.-.+|.+|=++|++.++||+++.|
T Consensus 37 l~v~~~~TV~~LK~~I~~~~gip~~~qr 64 (98)
T 4hcn_B 37 LEVESSDTIDNVKSKIQDKEGIPPDQQR 64 (98)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGCE
T ss_pred EEECCCCcHHHHHHHHHHHhCCChhHEE
Confidence 3577788999999999999999988653
No 40
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=51.82 E-value=6.5 Score=23.01 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.3
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
=.|+.-.+|.+|=++|++.+++|+++-
T Consensus 32 ~~v~~~~tV~~lK~~i~~~~gip~~~q 58 (88)
T 4eew_A 32 FIVGAQMNVKEFKEHIAASVSIPSEKQ 58 (88)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 357778899999999999999998764
No 41
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=56.76 E-value=3.1 Score=23.53 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=21.8
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|-++|++..++|+++.|
T Consensus 16 ~v~~~~tV~~lK~~i~~~~gi~~~~qr 42 (76)
T 3b1l_X 16 EVDSDTSILQLKEVVAKQQGVPADQLR 42 (76)
Confidence 455667899999999999999987653
No 42
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=50.77 E-value=7.5 Score=24.06 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=22.9
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
=.|+.-.+|.+|-++|++..+|++++.
T Consensus 39 l~v~~~~TV~~LK~~I~~~~gip~~~q 65 (101)
T 2klc_A 39 FAVPENSSVQQFKEEISKRFKSHTDQL 65 (101)
T ss_dssp EEECSCCCHHHHHHHHHHHHTCCGGGE
T ss_pred EEECCCCCHHHHHHHHHHHHCcChhhE
Confidence 356667899999999999999998764
No 43
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=50.33 E-value=3.4 Score=24.97 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.0
Q ss_pred cCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 61 SGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 61 ~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
-||+|..-++...-+.||++|.+.|
T Consensus 79 ~Gf~~~s~F~r~Fk~~~G~tP~~yr 103 (107)
T 2k9s_A 79 VGFDDQLYFSRVFKKCTGASPSEFR 103 (107)
T ss_dssp TTCCCHHHHHHHHHHHHSSCHHHHH
T ss_pred hCCCCHHHHHHHHHHHHCcCHHHHH
Confidence 4999999999999999999998753
No 44
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=49.98 E-value=13 Score=22.09 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=19.6
Q ss_pred cCccchHHHHHhhhhhhcCCCCcC
Q psy16017 61 SGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 61 ~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
+.=..|.+|.++|++..+|+++.-
T Consensus 18 ~~~~Tv~~Lk~~I~~~~gi~~~~q 41 (86)
T 2kzr_A 18 SSRTRLRELQGQIAAITGIAPGSQ 41 (86)
T ss_dssp CTTCBHHHHHHHHHHHTCCCTTTC
T ss_pred CCCCCHHHHHHHHHHHhCCCccce
Confidence 334689999999999999987654
No 45
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.78 E-value=9.5 Score=22.67 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.5
Q ss_pred cchHHHHHhhhhhhcCCCCcCC
Q psy16017 64 SNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 64 snvkELY~kIae~f~i~p~e~~ 85 (85)
.+|.+|-++|++..++|+++.|
T Consensus 32 ~TV~~LK~~i~~~~gip~~~qr 53 (92)
T 1wxv_A 32 PVVQDLAQVVEEVIGVPQSFQK 53 (92)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCE
T ss_pred CcHHHHHHHHHHHHCcCHHHEE
Confidence 7899999999999999988643
No 46
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=49.71 E-value=7.9 Score=24.61 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=22.4
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++..+||+++.
T Consensus 25 ~v~~~~TV~~LK~~I~~~~gip~~~q 50 (114)
T 2kdi_A 25 EVESSDTIDNVKSKIQDKEGIPPDQQ 50 (114)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCCcHHHHHHHHHHHHCcChHHE
Confidence 45667899999999999999998864
No 47
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=49.20 E-value=2.4 Score=28.66 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.3
Q ss_pred hHHHHHhhhhhhcCCCCcC
Q psy16017 66 VRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 66 vkELY~kIae~f~i~p~e~ 84 (85)
-|+||..||+.|+.+++.|
T Consensus 47 tK~LYp~IA~k~~TT~s~V 65 (120)
T 1fc3_A 47 TKVLYPDIAKKYNTTASRV 65 (120)
T ss_dssp TTTHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHH
Confidence 3679999999999988765
No 48
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=48.74 E-value=11 Score=22.44 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.2
Q ss_pred CccchHHHHHhhhhhh--cCCCCcCC
Q psy16017 62 GFSNVRELYQKIAECY--EFPAEENR 85 (85)
Q Consensus 62 gFsnvkELY~kIae~f--~i~p~e~~ 85 (85)
.-.+|.+|-++|++.+ ++++++.|
T Consensus 28 ~~~TV~~lK~~I~~~~~~~i~~~~Qr 53 (93)
T 1wgd_A 28 RGWSVGHLKAHLSRVYPERPRPEDQR 53 (93)
T ss_dssp TTSCHHHHHHHHHHHSTTCCCTTTCE
T ss_pred CCCcHHHHHHHHHHHhcCCCChHHeE
Confidence 7789999999999998 99988753
No 49
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=48.39 E-value=9.6 Score=24.73 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.1
Q ss_pred ccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 60 ISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 60 I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
|+-=.+|.+|=++|++.+++|+++.|
T Consensus 36 v~~~~TV~~lK~kI~~k~gip~~qQr 61 (100)
T 1wju_A 36 TRLHITGRELRSKIAETFGLQENYIK 61 (100)
T ss_dssp EESSSBHHHHHHHHHHHTTCCSTTCE
T ss_pred eCCcCHHHHHHHHHHHHHCcCHHHeE
Confidence 44557899999999999999998754
No 50
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=48.23 E-value=52 Score=21.17 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=24.2
Q ss_pred ceeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 57 TGLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 57 tg~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
+=.|+.-.+|.+|-++|++.++|++++.|
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr 73 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQLV 73 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceEE
Confidence 34567778999999999999999988653
No 51
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=48.23 E-value=16 Score=22.60 Aligned_cols=31 Identities=6% Similarity=0.172 Sum_probs=24.7
Q ss_pred CCCceeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 54 GSPTGLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 54 GSptg~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
|.-+=.|+.-.+|.+|-++|++..+|++++.
T Consensus 32 g~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q 62 (100)
T 1yqb_A 32 DKEDFSVTDTCTIQQLKEEISQRFKAHPDQL 62 (100)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHHCcChhhE
Confidence 3334456777899999999999999998764
No 52
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=47.98 E-value=3.9 Score=24.93 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.9
Q ss_pred cCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 61 SGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 61 ~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
-||+|..-++...-+.||++|.+.|
T Consensus 82 ~Gf~~~s~F~r~Fk~~~G~tP~~yR 106 (113)
T 3oio_A 82 CGFSSGPHFSSTYRNHFNITPREER 106 (113)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHHH
T ss_pred HCCCCHHHHHHHHHHHHCcCHHHHH
Confidence 4899999999999999999998753
No 53
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=47.90 E-value=3.9 Score=24.73 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=21.9
Q ss_pred cCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 61 SGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 61 ~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
-||+|..-++...-+.||++|.|.|
T Consensus 80 ~Gf~~~s~F~r~Fk~~~G~tP~~yR 104 (108)
T 3oou_A 80 SGYTDMAYFYRQFKKHTGETPNRYR 104 (108)
T ss_dssp TTCCCHHHHHHHHHHHHSSCHHHHH
T ss_pred cCCCChHHHHHHHHHHhCcCHHHHH
Confidence 5899999999999999999998753
No 54
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=47.69 E-value=9.3 Score=23.82 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=22.8
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|=++|++.++|++++.|
T Consensus 17 ~v~~~~TV~~LK~~I~~~~gip~~~Qr 43 (106)
T 3m62_B 17 DLEPSNTILETKTKLAQSISCEESQIK 43 (106)
T ss_dssp CCCTTSBHHHHHHHHHHTTTSCGGGCE
T ss_pred EECCCCcHHHHHHHHHHHHCCChhhEE
Confidence 356778999999999999999988653
No 55
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=46.57 E-value=14 Score=22.93 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.5
Q ss_pred eccC-ccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISG-FSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~g-FsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+. -.+|.+|-++|++.++||+++.|
T Consensus 46 ~v~~l~~TV~~LK~~I~~~~gip~~~Qr 73 (111)
T 1we6_A 46 TVQSLSENVGSLKEKIAGEIQIPANKQK 73 (111)
T ss_dssp EESCSSSBHHHHHHHHHHHTTCCTTTSE
T ss_pred EecCCCCcHHHHHHHHHHHHCCCHHHeE
Confidence 4555 68899999999999999998753
No 56
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=46.21 E-value=17 Score=22.34 Aligned_cols=27 Identities=0% Similarity=-0.112 Sum_probs=23.0
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|-++|++..+|++++-|
T Consensus 23 ~v~~~~TV~~lK~~I~~~tgip~~~Qk 49 (96)
T 1wgg_A 23 ELNTDEPPMVFKAQLFALTGVQPARQK 49 (96)
T ss_dssp EEESSSCHHHHHHHHHHHTCCCTTTSC
T ss_pred EECCCCcHHHHHHHHHHHHCcCHHHeE
Confidence 456678999999999999999998754
No 57
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=46.20 E-value=14 Score=22.18 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=22.2
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++..+||+++-
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~Q 48 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQ 48 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTC
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHe
Confidence 34666899999999999999999864
No 58
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=46.15 E-value=9.8 Score=23.79 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=22.7
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
=.|+.-.+|.+|-++|++.+++|+++.
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q 41 (152)
T 3b08_A 15 LEVEPSDTIENVKAKIQDKEGIPPDQQ 41 (152)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEECCCCCHHHHHHHHHHHHCcChHHe
Confidence 356677899999999999999998764
No 59
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=45.94 E-value=11 Score=20.34 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=12.2
Q ss_pred HHHHHhhhhhhcCCCCcC
Q psy16017 67 RELYQKIAECYEFPAEEN 84 (85)
Q Consensus 67 kELY~kIae~f~i~p~e~ 84 (85)
+++++.+.+.++++++++
T Consensus 21 ~~i~~~l~~~lg~p~~~v 38 (62)
T 1otf_A 21 RQVSEAMANSLDAPLERV 38 (62)
T ss_dssp HHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHhCcCcccE
Confidence 344455558889998775
No 60
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=45.50 E-value=4.5 Score=24.37 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.0
Q ss_pred cCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 61 SGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 61 ~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
-||+|..-++...-+.||++|.|.|
T Consensus 79 ~Gf~~~s~F~r~Fk~~~G~tP~~yr 103 (108)
T 3mn2_A 79 CGFSNLGHFARDYRDMFGEKPSETL 103 (108)
T ss_dssp TTCCCHHHHHHHHHHHHSSCHHHHH
T ss_pred hCCCCHHHHHHHHHHHHCcChHHHH
Confidence 4999999999999999999998753
No 61
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=44.06 E-value=14 Score=23.05 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=23.1
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
=.|+.-.+|.+|-++|++..++++++.
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~q 76 (111)
T 2ojr_A 50 LEVEPSDTIENVKAKIQDKEGIPPDQQ 76 (111)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCTTTE
T ss_pred EEeCCCCCHHHHHHHHHHHHCcCcccE
Confidence 356677899999999999999998864
No 62
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=43.87 E-value=12 Score=24.32 Aligned_cols=33 Identities=12% Similarity=0.333 Sum_probs=28.2
Q ss_pred CCCceeeeeecccCCCceeccCccchHHHHHhhhhh
Q psy16017 41 SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAEC 76 (85)
Q Consensus 41 ~~p~LvFh~QLAHGSptg~I~gFsnvkELY~kIae~ 76 (85)
..|.|||-.+ |-..+||.||-+-.++.+.+...
T Consensus 76 g~PT~i~f~~---G~ev~Ri~G~~~~~~f~~~L~~~ 108 (116)
T 3dml_A 76 FTPTFVLMAG---DVESGRLEGYPGEDFFWPMLARL 108 (116)
T ss_dssp SSSEEEEEET---TEEEEEEECCCCHHHHHHHHHHH
T ss_pred CCCEEEEEEC---CEEEeeecCCCCHHHHHHHHHHH
Confidence 4578999886 99999999999999998887654
No 63
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=43.19 E-value=12 Score=21.09 Aligned_cols=19 Identities=0% Similarity=-0.017 Sum_probs=13.1
Q ss_pred hHHHHHhhhhhhcCCCCcC
Q psy16017 66 VRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 66 vkELY~kIae~f~i~p~e~ 84 (85)
++++++.++++++++++++
T Consensus 23 ~~~lt~~l~~~lg~p~~~v 41 (67)
T 3m21_A 23 IEGVSDLMVKVLNKNKASI 41 (67)
T ss_dssp HHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHCcCcccE
Confidence 3445555568889998876
No 64
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=42.63 E-value=13 Score=23.81 Aligned_cols=28 Identities=7% Similarity=-0.005 Sum_probs=23.6
Q ss_pred ceeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 57 TGLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 57 tg~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
+-+|+--.+|.+|-++|.+.++||+++-
T Consensus 21 e~~v~~~~TV~~lK~ki~~~~Gip~~~q 48 (122)
T 1t0y_A 21 EKKYPAGMSLNDLKKKLELVVGTTVDSM 48 (122)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCTTTE
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHe
Confidence 3456666899999999999999999864
No 65
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=42.29 E-value=14 Score=19.69 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=14.2
Q ss_pred hHHHHHhhhhhhcCCCCcC
Q psy16017 66 VRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 66 vkELY~kIae~f~i~p~e~ 84 (85)
.+++++.+++++++|++.+
T Consensus 23 ~~~l~~~l~~~lg~p~~~v 41 (63)
T 2x4k_A 23 VSEVTDAVEKTTGANRQAI 41 (63)
T ss_dssp HHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHhCcCcccE
Confidence 4567777778999998765
No 66
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=41.68 E-value=5.6 Score=24.93 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=21.9
Q ss_pred cCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 61 SGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 61 ~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
-||+|..-++...-+.||++|+|.|
T Consensus 86 ~Gf~~~s~F~r~Fk~~~G~tP~~yR 110 (129)
T 1bl0_A 86 YGFESQQTLTRTFKNYFDVPPHKYR 110 (129)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHHH
T ss_pred HCCCCHHHHHHHHHHHHCcCHHHHH
Confidence 5999999999999999999998753
No 67
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=41.39 E-value=16 Score=22.94 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=21.9
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++..+|++++.
T Consensus 51 ~v~~~~TV~~LK~~I~~~~gip~~~Q 76 (115)
T 1we7_A 51 TLPLTDQVSVIKVKIHEATGMPAGKQ 76 (115)
T ss_dssp EECSCSBTHHHHHHHHHHSSCCTTTE
T ss_pred EECCCCCHHHHHHHHHHHHCCChHHE
Confidence 35556899999999999999998864
No 68
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.68 E-value=17 Score=21.82 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=21.1
Q ss_pred eccCccchHHHHHhhhhh---hcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAEC---YEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~---f~i~p~e~ 84 (85)
.|+.-.+|.+|-++|++. .+|++++.
T Consensus 16 ~v~~~~TV~~LK~~I~~~~~~~gip~~~q 44 (95)
T 1uel_A 16 DIDPEETVKALKEKIESEKGKDAFPVAGQ 44 (95)
T ss_dssp ECCTTSBHHHHHHHHHHHHCTTTCCTTTE
T ss_pred EECCCCHHHHHHHHHHhhcccCCCChhhE
Confidence 456668999999999998 57988764
No 69
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=40.53 E-value=16 Score=20.49 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=11.4
Q ss_pred HHHHhhhhhhcCCCCcC
Q psy16017 68 ELYQKIAECYEFPAEEN 84 (85)
Q Consensus 68 ELY~kIae~f~i~p~e~ 84 (85)
++.+.+++++++++++|
T Consensus 21 ~it~~~~~~lg~~~~~v 37 (62)
T 3m20_A 21 RLTSVAAEIYGMDRSAI 37 (62)
T ss_dssp HHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHhCcCcceE
Confidence 34444447888999876
No 70
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=40.24 E-value=15 Score=20.56 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=12.4
Q ss_pred HHHHHhhhhhhcCCCCcC
Q psy16017 67 RELYQKIAECYEFPAEEN 84 (85)
Q Consensus 67 kELY~kIae~f~i~p~e~ 84 (85)
+++++.+.+++++|++++
T Consensus 21 ~~it~~~~~~lg~p~~~v 38 (65)
T 3ry0_A 21 EALTAAAHETLGTPVEAV 38 (65)
T ss_dssp HHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHhCcCcccE
Confidence 344555558899998775
No 71
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=40.16 E-value=6.1 Score=24.37 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=21.7
Q ss_pred cCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 61 SGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 61 ~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
-||++..-++...-+.||++|.|.|
T Consensus 81 ~Gf~~~s~F~r~Fk~~~G~tP~~yr 105 (120)
T 3mkl_A 81 CGYHSVSYFIYVFRNYYGMTPTEYQ 105 (120)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHHH
T ss_pred HCCCCHHHHHHHHHHHHCcCHHHHH
Confidence 4899999999999999999998753
No 72
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=39.64 E-value=19 Score=22.47 Aligned_cols=21 Identities=5% Similarity=0.393 Sum_probs=18.5
Q ss_pred cCccchHHHHHhhhhhhcCCC
Q psy16017 61 SGFSNVRELYQKIAECYEFPA 81 (85)
Q Consensus 61 ~gFsnvkELY~kIae~f~i~p 81 (85)
..+++..++|..++++|++|.
T Consensus 9 ~~i~~~~~f~~~~~~~~~~p~ 29 (90)
T 2cx6_A 9 DEIESQEDFYRDFSQTFGLAK 29 (90)
T ss_dssp TSCCSHHHHHHHHHHHTTCCT
T ss_pred CCCCCHHHHHHHHHHHhCCch
Confidence 467889999999999999984
No 73
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=39.41 E-value=13 Score=21.35 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=12.1
Q ss_pred HHHHHhhhhhhcCCCCcC
Q psy16017 67 RELYQKIAECYEFPAEEN 84 (85)
Q Consensus 67 kELY~kIae~f~i~p~e~ 84 (85)
+++++.++++++++++++
T Consensus 22 ~~it~~l~~~lg~p~~~v 39 (72)
T 3mb2_A 22 RALSAAAAAAFDVPLAEV 39 (72)
T ss_dssp HHHHHHHHHHHTCCGGGE
T ss_pred HHHHHHHHHHhCCCcccE
Confidence 344455558889998765
No 74
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.95 E-value=33 Score=21.78 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=32.7
Q ss_pred ceeeeeecccCCCceeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 44 KLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 44 ~LvFh~QLAHGSptg~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
-+.|.+.+.-..-+=.|+.=++|.+|=++|.+..+|||++-
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~Q 49 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKM 49 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHe
Confidence 47799988544444556777899999999999999999864
No 75
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=38.27 E-value=16 Score=20.86 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=21.5
Q ss_pred eeccCccchHHHHHhhhhh---hcCCCCcC
Q psy16017 58 GLISGFSNVRELYQKIAEC---YEFPAEEN 84 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~---f~i~p~e~ 84 (85)
=.|+.-.+|.+|-++|++. .++++++.
T Consensus 20 ~~v~~~~TV~~lK~~i~~~~~~~gip~~~q 49 (85)
T 2wyq_A 20 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQ 49 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCTTTCCGGGE
T ss_pred EEECCCCCHHHHHHHHHhhccccCCCHHHe
Confidence 3466778999999999997 57887764
No 76
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=37.80 E-value=14 Score=20.34 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=13.8
Q ss_pred HHHHhhhhhhcCCCCcC
Q psy16017 68 ELYQKIAECYEFPAEEN 84 (85)
Q Consensus 68 ELY~kIae~f~i~p~e~ 84 (85)
+...+||++|+++++++
T Consensus 51 ~~l~~ia~~l~v~~~~l 67 (73)
T 3omt_A 51 ETLFDIAEALNVDVREL 67 (73)
T ss_dssp HHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHCcCHHHH
Confidence 45678999999998874
No 77
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=37.79 E-value=14 Score=22.55 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=13.3
Q ss_pred HHHHhhhhhhcCCCCcC
Q psy16017 68 ELYQKIAECYEFPAEEN 84 (85)
Q Consensus 68 ELY~kIae~f~i~p~e~ 84 (85)
+...+||++|+++++|+
T Consensus 66 ~~l~kIa~~L~v~~~~L 82 (88)
T 3t76_A 66 TVLLAICEYLNCDFGDI 82 (88)
T ss_dssp HHHHHHHHHHTCCGGGT
T ss_pred HHHHHHHHHHCcCHHHH
Confidence 45578899999988875
No 78
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=36.37 E-value=18 Score=21.31 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=12.2
Q ss_pred HHHHHhhhhhhcCCCCcC
Q psy16017 67 RELYQKIAECYEFPAEEN 84 (85)
Q Consensus 67 kELY~kIae~f~i~p~e~ 84 (85)
+++++.+.+++++|++++
T Consensus 22 ~~it~~l~~~lg~p~~~v 39 (76)
T 3ej9_A 22 AGLLRVISEATGEPRENI 39 (76)
T ss_dssp HHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHCcCcccE
Confidence 344444558889998876
No 79
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=36.35 E-value=16 Score=19.74 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=13.8
Q ss_pred HHHHhhhhhhcCCCCcC
Q psy16017 68 ELYQKIAECYEFPAEEN 84 (85)
Q Consensus 68 ELY~kIae~f~i~p~e~ 84 (85)
+...+||++|+++++++
T Consensus 53 ~~l~~la~~l~v~~~~l 69 (71)
T 2ewt_A 53 QRLAELADFYGVPVQEL 69 (71)
T ss_dssp HHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHCcCHHHH
Confidence 45678999999998874
No 80
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.04 E-value=23 Score=21.61 Aligned_cols=27 Identities=4% Similarity=0.114 Sum_probs=22.0
Q ss_pred eccCccchHHHHHhhhhh-hcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAEC-YEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~-f~i~p~e~~ 85 (85)
.|+.=.+|.+|.++|++. .+++|++-|
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~~~Qr 56 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYPARQS 56 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCTTTCC
T ss_pred EcCCCCcHHHHHHHHHHHhcCCChHHeE
Confidence 456668999999999995 789988754
No 81
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=36.04 E-value=16 Score=19.69 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=13.8
Q ss_pred HHHHhhhhhhcCCCCcC
Q psy16017 68 ELYQKIAECYEFPAEEN 84 (85)
Q Consensus 68 ELY~kIae~f~i~p~e~ 84 (85)
+...+||++|+++++++
T Consensus 56 ~~l~~l~~~l~~~~~~l 72 (74)
T 1y7y_A 56 VNILKLATALDIEPREL 72 (74)
T ss_dssp HHHHHHHHHTTSCGGGG
T ss_pred HHHHHHHHHhCcCHHHH
Confidence 45678999999998875
No 82
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=35.97 E-value=21 Score=23.42 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=24.5
Q ss_pred ceeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 57 TGLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 57 tg~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
+=.|+...+|.+|=++|++.++|++++-
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~Q 61 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQ 61 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHE
Confidence 4568889999999999999999998764
No 83
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=35.89 E-value=26 Score=20.26 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=21.8
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
+|.--+.++.|.+++++..+++++++|
T Consensus 17 ~v~~~t~l~kl~~~y~~~~gi~~~~~r 43 (72)
T 1wm3_A 17 KIKRHTPLSKLMKAYCERQGLSMRQIR 43 (72)
T ss_dssp EECTTSCTHHHHHHHHHHHTCCTTTCE
T ss_pred EECCCChHHHHHHHHHHHhCCCcceEE
Confidence 355567788899999999999998765
No 84
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=35.88 E-value=20 Score=19.28 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=10.5
Q ss_pred HHHhhhhhhcCCCCcC
Q psy16017 69 LYQKIAECYEFPAEEN 84 (85)
Q Consensus 69 LY~kIae~f~i~p~e~ 84 (85)
+.+.+.+.++++++++
T Consensus 23 i~~~l~~~lg~~~~~v 38 (61)
T 2opa_A 23 VTEAVKETTGASEEKI 38 (61)
T ss_dssp HHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHhCcCcCeE
Confidence 3444447788988765
No 85
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=34.78 E-value=22 Score=21.76 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=17.8
Q ss_pred cCccchHHHHHhhhhhhcCC
Q psy16017 61 SGFSNVRELYQKIAECYEFP 80 (85)
Q Consensus 61 ~gFsnvkELY~kIae~f~i~ 80 (85)
...++..++|..++++|++|
T Consensus 9 ~~i~~~~~~~~~l~~~l~~P 28 (90)
T 2za4_B 9 EQIRSISDLHQTLKKELALP 28 (90)
T ss_dssp GGCCSHHHHHHHHHHHTTCC
T ss_pred CCcCCHHHHHHHHHHHhCCC
Confidence 45788999999999999997
No 86
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=34.20 E-value=19 Score=22.50 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=23.3
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
=.|+.-.+|.+|=++|++.+++|+++.
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~Q 76 (111)
T 3vdz_A 50 LEVEPSDTIENVKAKIQDKEGIPPDQQ 76 (111)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEeCCCCCHHHHHHHHHHHhCCChHHE
Confidence 357778899999999999999998764
No 87
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=34.16 E-value=15 Score=29.31 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=23.7
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
+|..=+++.|||+.||+.|+++++++|
T Consensus 41 rv~k~~~~~~l~~~va~~lg~~~~~~R 67 (530)
T 2ylm_A 41 KVLKNSSLAEFVQSLSQTMGFPQDQIR 67 (530)
T ss_dssp EEETTSBHHHHHHHHHHHHTSCGGGEE
T ss_pred EEcCcCCHHHHHHHHHHHhCcCcccEE
Confidence 666778999999999999999988765
No 88
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.98 E-value=23 Score=21.93 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=18.8
Q ss_pred cchHHHHHhhhhhh--cCCCCc
Q psy16017 64 SNVRELYQKIAECY--EFPAEE 83 (85)
Q Consensus 64 snvkELY~kIae~f--~i~p~e 83 (85)
.+|.+|-++|++.. ++++++
T Consensus 45 ~TV~~LK~~i~~~~~~gip~~~ 66 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESVPDPE 66 (107)
T ss_dssp CBHHHHHHHHHHHCTTTCCCSS
T ss_pred CCHHHHHHHHHHHhccCCChhh
Confidence 78999999999999 999887
No 89
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=33.96 E-value=18 Score=19.67 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=14.1
Q ss_pred HHHHHhhhhhhcCCCCcC
Q psy16017 67 RELYQKIAECYEFPAEEN 84 (85)
Q Consensus 67 kELY~kIae~f~i~p~e~ 84 (85)
.+...+||++|+++++++
T Consensus 52 ~~~l~~ia~~l~~~~~~l 69 (76)
T 3bs3_A 52 LDMLVKVAELLNVDPRQL 69 (76)
T ss_dssp HHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHCcCHHHH
Confidence 345678999999998764
No 90
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=33.61 E-value=32 Score=22.03 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCCceeeeeecccCCCceeccCccchHHHHHhhhhhhcCCCCc
Q psy16017 41 SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEE 83 (85)
Q Consensus 41 ~~p~LvFh~QLAHGSptg~I~gFsnvkELY~kIae~f~i~p~e 83 (85)
.-|.++|--. |-..+++.|+.+..+|-+.|.+....++.+
T Consensus 91 ~iPT~~~fk~---G~~v~~~~G~~~~~~l~~~i~~~l~~~~~~ 130 (142)
T 2es7_A 91 RFPATLVFTD---GKLRGALSGIHPWAELLTLMRSIVDTPAAQ 130 (142)
T ss_dssp SSSEEEEESC---C----CEESCCCHHHHHHHHHHHHC-----
T ss_pred cCCeEEEEeC---CEEEEEEeCCCCHHHHHHHHHHHhcccccC
Confidence 3467777644 999999999999999999998877666554
No 91
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=33.57 E-value=23 Score=22.06 Aligned_cols=29 Identities=14% Similarity=-0.182 Sum_probs=24.5
Q ss_pred CceeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 56 PTGLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 56 ptg~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
-+-+|+--.+|.+|=++|.+.++||+++-
T Consensus 30 ~~~~v~~~~TV~~LK~kI~~~~GiP~~~Q 58 (95)
T 2kjr_A 30 FEVKLAKDLTVAQLKTKLEILTGGCAGTM 58 (95)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCSCTTTE
T ss_pred EEEEeCccCHHHHHHHHHHHHHCcCHHHe
Confidence 34467777899999999999999999874
No 92
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=33.37 E-value=21 Score=20.13 Aligned_cols=17 Identities=18% Similarity=0.022 Sum_probs=14.5
Q ss_pred HHHHhhhhhhcCCCCcC
Q psy16017 68 ELYQKIAECYEFPAEEN 84 (85)
Q Consensus 68 ELY~kIae~f~i~p~e~ 84 (85)
+...+||++|+++++++
T Consensus 55 ~~~~~ia~~l~v~~~~l 71 (80)
T 3kz3_A 55 YNAALLAKILKVSVEEF 71 (80)
T ss_dssp HHHHHHHHHHTSCGGGT
T ss_pred HHHHHHHHHhCCCHHHH
Confidence 56788999999999875
No 93
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=33.21 E-value=17 Score=22.27 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=23.8
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
-+++--.+|.+|=++|.+.+||||++-|
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~Qr 46 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQ 46 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEE
Confidence 4567778999999999999999998743
No 94
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=32.62 E-value=22 Score=21.87 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=21.2
Q ss_pred CccchHHHHHhh-hhhhcCCCCcCC
Q psy16017 62 GFSNVRELYQKI-AECYEFPAEENR 85 (85)
Q Consensus 62 gFsnvkELY~kI-ae~f~i~p~e~~ 85 (85)
.-.+|.+|=++| ++..++|+++.|
T Consensus 22 ~~~TV~~lK~~I~~~~~gip~~~Qr 46 (87)
T 2lxa_A 22 PSDTILQIKQHLISEEKASHISEIK 46 (87)
T ss_dssp TTCBHHHHHHHHHHTTSCSSSTTEE
T ss_pred CCCcHHHHHHHHHHHhcCCChHHEE
Confidence 778999999999 999999998754
No 95
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=31.96 E-value=28 Score=21.86 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=25.0
Q ss_pred CceeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 56 PTGLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 56 ptg~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
-+-+|+--.+|.+|=++|.+.++|||++-
T Consensus 29 ~e~~v~~~~TV~~LK~kIe~~~Gip~~~Q 57 (97)
T 2kj6_A 29 ADARFSPQMSVEAVKEKLWKKCGTSVNSM 57 (97)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCTTSE
T ss_pred EEEEeCCCChHHHHHHHHHHHHCcCHHHe
Confidence 44577788999999999999999999874
No 96
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=31.68 E-value=82 Score=18.57 Aligned_cols=43 Identities=14% Similarity=0.035 Sum_probs=31.1
Q ss_pred CceeeeeecccCC-C-ceeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 43 PKLIFHCQLAHGS-P-TGLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 43 p~LvFh~QLAHGS-p-tg~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
..+....|-.-|+ . .=.|.--+.++.|..++++..+++++++|
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~r 50 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLS 50 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEE
Confidence 3455555544454 2 45677778999999999999999998875
No 97
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=31.50 E-value=29 Score=19.52 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=26.1
Q ss_pred CCceeeeeecccCCCceeccCccchHHHHHhhhhhh
Q psy16017 42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECY 77 (85)
Q Consensus 42 ~p~LvFh~QLAHGSptg~I~gFsnvkELY~kIae~f 77 (85)
-|.++|.. .|....++.|+.+..+|.+.|.+..
T Consensus 77 ~Pt~~~~~---~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 77 VPQILYFK---DGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp SCEEEEEE---TTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred CCEEEEEE---CCEEEEEEeccCCHHHHHHHHHHHh
Confidence 46777763 4888889999999999998887654
No 98
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=30.66 E-value=1.1e+02 Score=19.71 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=30.0
Q ss_pred ceeeeeecccCCC-ceeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 44 KLIFHCQLAHGSP-TGLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 44 ~LvFh~QLAHGSp-tg~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.+....|-.-|+. .=+|.--+.++.|.+++++..+|+++++|
T Consensus 26 ~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~r 68 (110)
T 2k8h_A 26 LVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVR 68 (110)
T ss_dssp CEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEE
Confidence 4444444334553 24577778899999999999999998875
No 99
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=30.56 E-value=26 Score=20.34 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=12.4
Q ss_pred HHHHHhhhhhhcCCCCcC
Q psy16017 67 RELYQKIAECYEFPAEEN 84 (85)
Q Consensus 67 kELY~kIae~f~i~p~e~ 84 (85)
+++.+.+.++++++++++
T Consensus 22 ~~l~~~l~~~lgip~~~v 39 (76)
T 1gyx_A 22 ADITDVIIRHLNSKDSSI 39 (76)
T ss_dssp HHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHhCcCCceE
Confidence 344555558899998875
No 100
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=30.37 E-value=23 Score=19.14 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=11.5
Q ss_pred HHHHHhhhhhhcCCCCcC
Q psy16017 67 RELYQKIAECYEFPAEEN 84 (85)
Q Consensus 67 kELY~kIae~f~i~p~e~ 84 (85)
++|.+.+++..+++++.|
T Consensus 22 ~~lt~~l~~~lg~~~~~v 39 (64)
T 3abf_A 22 RRLTEMASRLLGEPYEEV 39 (64)
T ss_dssp HHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHhCCCcccE
Confidence 344555557788887764
No 101
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=30.07 E-value=24 Score=22.60 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=23.1
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+.-.+|.+|=++|++..++|+++-
T Consensus 97 ~v~~~~tV~~lK~~i~~~~gip~~~q 122 (159)
T 3rt3_B 97 EVRLTQTVAHLKQQVSGLEGVQDDLF 122 (159)
T ss_dssp EECTTSBHHHHHHHHHHHHTCCGGGE
T ss_pred EeCCCCCHHHHHHHHHHHHCCCHHHE
Confidence 57788899999999999999998864
No 102
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=29.68 E-value=25 Score=22.55 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=23.0
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
.|+...+|.+|=++|++.++||+++-
T Consensus 18 ~v~~~~tV~~lK~~I~~~~gip~~~Q 43 (159)
T 3rt3_B 18 SLSSSMSVSELKAQITQKIGVHAFQQ 43 (159)
T ss_dssp ECCTTCCHHHHHHHHHHHHCCCGGGE
T ss_pred EeCCCCcHHHHHHHHHHHhCCCHHHE
Confidence 57788999999999999999998753
No 103
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.39 E-value=47 Score=21.14 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=30.0
Q ss_pred ceeeeeecccCCC-ceeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 44 KLIFHCQLAHGSP-TGLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 44 ~LvFh~QLAHGSp-tg~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.+....|-.-|+. .=+|.--+.++.|..++++..+|++.++|
T Consensus 24 ~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~r 66 (104)
T 1wz0_A 24 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIR 66 (104)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSC
T ss_pred eEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEE
Confidence 4444444323542 24577778899999999999999998876
No 104
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=29.38 E-value=23 Score=22.03 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=22.8
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
+|+--+.++.|.+++++..+|+++++|
T Consensus 23 ~v~~~t~l~kl~~~y~~~~gi~~~~~r 49 (94)
T 2io1_B 23 KIKRHTPLSKLMKAYCERQGLSMRQIR 49 (94)
T ss_dssp EEETTSCTHHHHHHHHHHHTCCGGGEE
T ss_pred EECCCCHHHHHHHHHHHHhCCCcccEE
Confidence 566668889999999999999998765
No 105
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=28.49 E-value=33 Score=19.65 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=14.0
Q ss_pred HHHHhhhhhhcCCCCcC
Q psy16017 68 ELYQKIAECYEFPAEEN 84 (85)
Q Consensus 68 ELY~kIae~f~i~p~e~ 84 (85)
+...+||++|+++++++
T Consensus 56 ~~l~~la~~l~v~~~~l 72 (91)
T 1x57_A 56 QVLGKIERAIGLKLRGK 72 (91)
T ss_dssp HHHHHHHHHHTBCCSST
T ss_pred HHHHHHHHHHCcCHHHH
Confidence 45678999999999874
No 106
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=27.44 E-value=32 Score=21.31 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=22.0
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
+|.--+.++.|.+++++..+++++++|
T Consensus 21 ~vk~~t~l~kl~~~y~~~~gi~~~~~r 47 (91)
T 2io0_B 21 KIKRHTPLSKLMKAYCERQGLSMRQIR 47 (91)
T ss_dssp EEETTSCTHHHHHHHHHHTTCCSTTEE
T ss_pred EECCCChHHHHHHHHHHHhCCCcccEE
Confidence 455667888899999999999998764
No 107
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=27.37 E-value=29 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=23.7
Q ss_pred ceeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 57 TGLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 57 tg~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
+=.|+.-..|.+|=++|++.++|||++-
T Consensus 40 ~l~V~ps~TV~~LK~~I~~k~Gipp~~Q 67 (105)
T 4dbg_A 40 WLTVRPDMTVASLKDMVFLDYGFPPVLQ 67 (105)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEEECCcChHHHHHHHHHHHhCCCHHHE
Confidence 3467788899999999999999999764
No 108
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=27.04 E-value=31 Score=22.50 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.7
Q ss_pred hHHHHHhhhhhhcCCCCcCC
Q psy16017 66 VRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 66 vkELY~kIae~f~i~p~e~~ 85 (85)
++++++.+.++|++|+++++
T Consensus 20 ~~~it~al~e~~~vP~~dv~ 39 (136)
T 3mlc_A 20 ADAVHDALVEVLAIPARDRF 39 (136)
T ss_dssp HHHHHHHHHHHHCCCTTCCE
T ss_pred HHHHHHHHHHHhCcChhHEE
Confidence 46788888899999999863
No 109
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=26.67 E-value=43 Score=20.89 Aligned_cols=19 Identities=11% Similarity=0.347 Sum_probs=16.4
Q ss_pred hHHHHHhhhhhhcCCCCcC
Q psy16017 66 VRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 66 vkELY~kIae~f~i~p~e~ 84 (85)
++++++.++++++.|++++
T Consensus 19 ~~~i~~al~~~lg~p~~~~ 37 (128)
T 1mww_A 19 AEVIYNSLHLGLDIPKGKH 37 (128)
T ss_dssp HHHHHHHHHHHHCCCTTSS
T ss_pred HHHHHHHHHHHHCcChHHE
Confidence 4678999999999999865
No 110
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=26.45 E-value=28 Score=22.51 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=22.5
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+-=.+|.+|=++|++..+||+++.|
T Consensus 37 ~v~p~DTI~~LK~~I~~k~Gip~~qQr 63 (93)
T 3plu_A 37 KCLGEDSVGDFKKVLSLQIGTQPNKIV 63 (93)
T ss_dssp EEETTSBHHHHHHHHHHHHTCCGGGEE
T ss_pred EECCcCHHHHHHHHHHHHhCCCHHHEE
Confidence 355668899999999999999998753
No 111
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=25.80 E-value=46 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=23.3
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|=++|++..+||+++-|
T Consensus 112 ~v~~~~tV~~lK~~I~~~~gip~~~q~ 138 (172)
T 3u30_A 112 EVEPSDTIENVKAKIQDKEGIPPDQQR 138 (172)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGCC
T ss_pred EecCCCCHHHHHHHHHHHhCCCceeEE
Confidence 467788999999999999999998654
No 112
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=25.78 E-value=39 Score=19.20 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=25.9
Q ss_pred CCceeeeeecccCCCceeccCccchHHHHHhhhhhh
Q psy16017 42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECY 77 (85)
Q Consensus 42 ~p~LvFh~QLAHGSptg~I~gFsnvkELY~kIae~f 77 (85)
-|.++|-- .|-...++.|+.+..+|-+.|.+.+
T Consensus 72 ~Pt~~~~~---~G~~~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 72 GPTVLLFY---NGKEILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp CCEEEEEE---TTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred CCEEEEEe---CCeEEEEEeCCcCHHHHHHHHHHhh
Confidence 46777663 4888889999999999998887654
No 113
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=25.18 E-value=15 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=0.0
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|=++|++.++||+++.|
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gip~~~Qr 42 (128)
T 3u5e_m 16 EVESSDTIDNVKSKIQDKEGIPPDQQR 42 (128)
T ss_dssp ---------------------------
T ss_pred EeCCCCCHHHHHHHHHHHhCcChHHEE
Confidence 355667899999999999999988643
No 114
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=24.35 E-value=16 Score=19.30 Aligned_cols=16 Identities=6% Similarity=0.123 Sum_probs=12.6
Q ss_pred HHHHhhhhhhcCCCCc
Q psy16017 68 ELYQKIAECYEFPAEE 83 (85)
Q Consensus 68 ELY~kIae~f~i~p~e 83 (85)
+...+||++|++++++
T Consensus 48 ~~l~~i~~~l~~~~~~ 63 (68)
T 2r1j_L 48 ENLLALSKALQCSPDY 63 (68)
T ss_dssp HHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHhCCCHHH
Confidence 4567899999998765
No 115
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.29 E-value=33 Score=23.27 Aligned_cols=44 Identities=7% Similarity=-0.071 Sum_probs=31.1
Q ss_pred CCceeeeeecccCCCc--eeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 42 KPKLIFHCQLAHGSPT--GLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 42 ~p~LvFh~QLAHGSpt--g~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.+.+.|..+++.++-. =.|+.=..|+||=+.+|+.|++|++..|
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qr 58 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQ 58 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEE
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEE
Confidence 3456777776554421 2244456899999999999999998753
No 116
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=24.16 E-value=44 Score=22.58 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=23.0
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|=++|++..++|+++.|
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gip~~~Qr 42 (169)
T 3l0w_B 16 EVESSDTIDNVKSKIQDKEGIPPDQQR 42 (169)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCTTTEE
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHEE
Confidence 466778999999999999999998743
No 117
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=24.03 E-value=42 Score=21.31 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=17.7
Q ss_pred cchHHHHHhhhhhhcCCCCcC
Q psy16017 64 SNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 64 snvkELY~kIae~f~i~p~e~ 84 (85)
.+..+|+.+|++.+.++++++
T Consensus 24 ~~y~~L~~~l~~kL~l~~~~~ 44 (83)
T 1oey_A 24 LPYSQVRDMVSKKLELRLEHT 44 (83)
T ss_dssp CCHHHHHHHHHHHTTCCGGGC
T ss_pred CCHHHHHHHHHHHhCCCccee
Confidence 467899999999999987654
No 118
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=23.76 E-value=36 Score=19.32 Aligned_cols=17 Identities=18% Similarity=0.022 Sum_probs=13.6
Q ss_pred HHHHhhhhhhcCCCCcC
Q psy16017 68 ELYQKIAECYEFPAEEN 84 (85)
Q Consensus 68 ELY~kIae~f~i~p~e~ 84 (85)
+...+||++|+++++++
T Consensus 60 ~~l~~ia~~l~v~~~~l 76 (92)
T 1lmb_3 60 YNAALLAKILKVSVEEF 76 (92)
T ss_dssp HHHHHHHHHHTSCGGGT
T ss_pred HHHHHHHHHHCCCHHHH
Confidence 45678999999998765
No 119
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=23.50 E-value=32 Score=22.23 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=13.7
Q ss_pred HHHHhhhhhhcCCCCc
Q psy16017 68 ELYQKIAECYEFPAEE 83 (85)
Q Consensus 68 ELY~kIae~f~i~p~e 83 (85)
+.-++||++|+++++.
T Consensus 60 ~~l~~iA~~f~V~~~y 75 (123)
T 3qwg_A 60 ATMAALANFFRIKAAY 75 (123)
T ss_dssp HHHHHHHHHTTSCTHH
T ss_pred HHHHHHHHHhCCCHHH
Confidence 5778999999999864
No 120
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.37 E-value=48 Score=19.94 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=22.7
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
-++.-=.+|.+|=.+|++.|++|+...
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q 53 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSEL 53 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHe
Confidence 355666799999999999999999764
No 121
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=23.09 E-value=17 Score=20.37 Aligned_cols=16 Identities=13% Similarity=0.028 Sum_probs=12.5
Q ss_pred HHHHhhhhhhcCCCCc
Q psy16017 68 ELYQKIAECYEFPAEE 83 (85)
Q Consensus 68 ELY~kIae~f~i~p~e 83 (85)
+...+||++|++++++
T Consensus 54 ~~l~~ia~~l~v~~~~ 69 (82)
T 3s8q_A 54 KSLELIMKGLEVSDVV 69 (82)
T ss_dssp HHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHCcCHHH
Confidence 4567899999998765
No 122
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.99 E-value=18 Score=19.01 Aligned_cols=16 Identities=38% Similarity=0.412 Sum_probs=12.5
Q ss_pred HHHHhhhhhhcCCCCc
Q psy16017 68 ELYQKIAECYEFPAEE 83 (85)
Q Consensus 68 ELY~kIae~f~i~p~e 83 (85)
+...+||++|++++++
T Consensus 44 ~~l~~i~~~l~~~~~~ 59 (66)
T 2xi8_A 44 QLALKIAYYLNTPLED 59 (66)
T ss_dssp HHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHCcCHHH
Confidence 4567899999998765
No 123
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=22.82 E-value=18 Score=20.51 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=12.5
Q ss_pred HHHHhhhhhhcCCCCc
Q psy16017 68 ELYQKIAECYEFPAEE 83 (85)
Q Consensus 68 ELY~kIae~f~i~p~e 83 (85)
+...+||++|++++++
T Consensus 58 ~~l~~ia~~l~v~~~~ 73 (86)
T 2ofy_A 58 FTIAAVARVLDLSLDD 73 (86)
T ss_dssp HHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHhCCCHHH
Confidence 4567899999998765
No 124
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=22.75 E-value=71 Score=18.95 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=26.2
Q ss_pred CCceeeeeecccCCCceeccCccchHHHHHhhhhhhcCCC
Q psy16017 42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPA 81 (85)
Q Consensus 42 ~p~LvFh~QLAHGSptg~I~gFsnvkELY~kIae~f~i~p 81 (85)
-|.++|-- .|-...++.|+ +..+|-+.|.+..+-.+
T Consensus 100 ~Pt~~~~~---~G~~~~~~~G~-~~~~l~~~l~~~~~~~~ 135 (139)
T 3d22_A 100 TPTFFFLR---DGQQVDKLVGA-NKPELHKKITAILDSLP 135 (139)
T ss_dssp ESEEEEEE---TTEEEEEEESC-CHHHHHHHHHHHHHTSC
T ss_pred ccEEEEEc---CCeEEEEEeCC-CHHHHHHHHHHHhccCC
Confidence 35666653 48888889999 78888888887765333
No 125
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=22.64 E-value=52 Score=21.00 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=16.7
Q ss_pred chHHHHHhhhhhhcCCCCc
Q psy16017 65 NVRELYQKIAECYEFPAEE 83 (85)
Q Consensus 65 nvkELY~kIae~f~i~p~e 83 (85)
+..+|+++|.+.|.++..+
T Consensus 27 ~~~~L~~kv~~~~~~~~~~ 45 (89)
T 1vd2_A 27 SFEGLCNEVRDMCSFDNEQ 45 (89)
T ss_dssp CHHHHHHHHHHHTTCCSSC
T ss_pred CHHHHHHHHHHHhCCCCCC
Confidence 7899999999999987654
No 126
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=22.37 E-value=69 Score=19.36 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=29.2
Q ss_pred CCceeeeeecccCCCceeccCccchHHHHHhhhhhhcCCC
Q psy16017 42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPA 81 (85)
Q Consensus 42 ~p~LvFh~QLAHGSptg~I~gFsnvkELY~kIae~f~i~p 81 (85)
-|.++|-- .|....++.|..+..+|.+.|.+...-++
T Consensus 110 ~Pt~~~~~---~G~~~~~~~G~~~~~~l~~~l~~~l~~~~ 146 (148)
T 3p2a_A 110 IPTIMLYR---NGKMIDMLNGAVPKAPFDNWLDEQLSRDP 146 (148)
T ss_dssp SSEEEEEE---TTEEEEEESSCCCHHHHHHHHHHHHHSCC
T ss_pred cCEEEEEE---CCeEEEEEeCCCCHHHHHHHHHHHhcccC
Confidence 35676664 48888999999999999999988776554
No 127
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=22.00 E-value=35 Score=22.24 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=13.6
Q ss_pred HHHHhhhhhhcCCCCc
Q psy16017 68 ELYQKIAECYEFPAEE 83 (85)
Q Consensus 68 ELY~kIae~f~i~p~e 83 (85)
+.-++||++|+++++.
T Consensus 62 ~~l~~iA~~f~V~~~y 77 (135)
T 3r1f_A 62 ATMAALANFFRIKAAY 77 (135)
T ss_dssp HHHHHHHHHHTSCTHH
T ss_pred HHHHHHHHHhCCCHHH
Confidence 5678999999999864
No 128
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=21.99 E-value=39 Score=20.79 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=28.8
Q ss_pred ceeeeeecccCCCc-eeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 44 KLIFHCQLAHGSPT-GLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 44 ~LvFh~QLAHGSpt-g~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.+....|-.-|+.. =+|.--+.++.|..++++..+++++++|
T Consensus 17 ~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~r 59 (93)
T 2d07_B 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIR 59 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEE
T ss_pred eEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceE
Confidence 45555553234422 2566668899999999999999988764
No 129
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=21.92 E-value=38 Score=19.80 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=13.3
Q ss_pred HHHHhhhhhhcCCCCcC
Q psy16017 68 ELYQKIAECYEFPAEEN 84 (85)
Q Consensus 68 ELY~kIae~f~i~p~e~ 84 (85)
+...+||++|+++++++
T Consensus 48 ~~l~~la~~l~v~~~~l 64 (98)
T 3lfp_A 48 EMANRLAKVLKIPVSYL 64 (98)
T ss_dssp HHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHCcCHHHH
Confidence 34568999999998764
No 130
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=21.60 E-value=59 Score=22.90 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=24.1
Q ss_pred eeccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 58 GLISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 58 g~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
=.|+.-.+|.+|=++|++..+||+++.|
T Consensus 120 l~V~~s~TV~~LK~kI~~~~gIp~~~Qr 147 (189)
T 3q3f_A 120 LEVEPSDTIENVKAKIQDKEGIPPDQQR 147 (189)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCC
T ss_pred EEeCCCCcHHHHHHHHHhccCCCHHHEE
Confidence 3577888999999999999999998754
No 131
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=21.45 E-value=19 Score=20.55 Aligned_cols=16 Identities=6% Similarity=0.343 Sum_probs=12.3
Q ss_pred HHHHhhhhhhcCCCCc
Q psy16017 68 ELYQKIAECYEFPAEE 83 (85)
Q Consensus 68 ELY~kIae~f~i~p~e 83 (85)
+...+||++|++++++
T Consensus 54 ~~l~~ia~~l~v~~~~ 69 (78)
T 3qq6_A 54 QFLEKVSAVLDVSVHT 69 (78)
T ss_dssp HHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHCcCHHH
Confidence 4667889999988754
No 132
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=21.42 E-value=20 Score=24.36 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=0.0
Q ss_pred eccCccchHHHHHhhhhhhcCCCCcCC
Q psy16017 59 LISGFSNVRELYQKIAECYEFPAEENR 85 (85)
Q Consensus 59 ~I~gFsnvkELY~kIae~f~i~p~e~~ 85 (85)
.|+.-.+|.+|=++|++.++||+++.|
T Consensus 16 ~V~~~~TV~~LK~~I~~~~gip~~~Qr 42 (152)
T 3u5c_f 16 EVESSDTIDNVKSKIQDKEGIPPDQQR 42 (152)
T ss_dssp ---------------------------
T ss_pred EECCCCCHHHHHHHHHHHhCCCHHHEE
Confidence 355667899999999999999998754
No 133
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.32 E-value=24 Score=22.10 Aligned_cols=8 Identities=50% Similarity=1.277 Sum_probs=6.8
Q ss_pred eeecccCC
Q psy16017 48 HCQLAHGS 55 (85)
Q Consensus 48 h~QLAHGS 55 (85)
.||.|||-
T Consensus 36 ~C~FAHG~ 43 (69)
T 2d9m_A 36 SCKFAHGN 43 (69)
T ss_dssp SCSSBSSH
T ss_pred ccCCcCCH
Confidence 69999994
No 134
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=21.01 E-value=57 Score=17.97 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=24.8
Q ss_pred CCceeeeeecccCCCceeccCccchHHHHHhhhhh
Q psy16017 42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAEC 76 (85)
Q Consensus 42 ~p~LvFh~QLAHGSptg~I~gFsnvkELY~kIae~ 76 (85)
-|.++|-- .|....++.|+.+..+|-+.|.+.
T Consensus 74 ~Pt~~~~~---~G~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 74 IPTLIVFK---DGQPVDKVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp BSEEEEEE---TTEEEEEEESCCCHHHHHHHHHTT
T ss_pred cCEEEEEe---CCeEEEEEeCCCCHHHHHHHHHHh
Confidence 45676664 488888999999999998887653
No 135
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=20.88 E-value=68 Score=19.24 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=25.6
Q ss_pred CCceeeeeecccCCCceeccCccchHHHHHhhhhh
Q psy16017 42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAEC 76 (85)
Q Consensus 42 ~p~LvFh~QLAHGSptg~I~gFsnvkELY~kIae~ 76 (85)
-|.++|- ..|....++.|+.+..+|-+.|.+.
T Consensus 90 ~Pt~~~~---~~G~~~~~~~G~~~~~~l~~~l~~~ 121 (123)
T 1oaz_A 90 IPTLLLF---KNGEVAATKVGALSKGQLKEFLDAN 121 (123)
T ss_dssp SSEEEEE---ESSSEEEEEESCCCHHHHHHHHTTT
T ss_pred cCEEEEE---ECCEEEEEEeCCCCHHHHHHHHHHH
Confidence 5678776 3599999999999998888877654
No 136
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=20.85 E-value=20 Score=19.55 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=12.6
Q ss_pred HHHHhhhhhhcCCCCcC
Q psy16017 68 ELYQKIAECYEFPAEEN 84 (85)
Q Consensus 68 ELY~kIae~f~i~p~e~ 84 (85)
+...+||++|+++++++
T Consensus 51 ~~l~~ia~~l~~~~~~l 67 (78)
T 3b7h_A 51 TTIRKVCGTLGISVHDF 67 (78)
T ss_dssp HHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 34568999999887653
No 137
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=20.66 E-value=61 Score=20.33 Aligned_cols=19 Identities=11% Similarity=0.366 Sum_probs=16.1
Q ss_pred hHHHHHhhhhhhcCCCCcC
Q psy16017 66 VRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 66 vkELY~kIae~f~i~p~e~ 84 (85)
++++++.++++++.|++++
T Consensus 21 ~~~i~~al~~~~g~p~~~~ 39 (131)
T 2aal_A 21 LDAAHGAMVDAFGVPANDR 39 (131)
T ss_dssp HHHHHHHHHHHHCCCTTCC
T ss_pred HHHHHHHHHHHhCcChhHE
Confidence 5678889999999999865
No 138
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.21 E-value=48 Score=21.54 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=16.0
Q ss_pred cchHHHHHhhhhhhcCCC
Q psy16017 64 SNVRELYQKIAECYEFPA 81 (85)
Q Consensus 64 snvkELY~kIae~f~i~p 81 (85)
+|.+||.+|..+.|.|+.
T Consensus 28 ~sL~EL~~K~~~~l~l~~ 45 (91)
T 2eel_A 28 SSLQELISKTLDALVIAT 45 (91)
T ss_dssp SSHHHHHHHHHHHTTCSS
T ss_pred CCHHHHHHHHHHHhcCCC
Confidence 589999999999999964
No 139
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=20.03 E-value=22 Score=24.09 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=16.7
Q ss_pred cCccchHHHHHhhhhhhcCCCCcC
Q psy16017 61 SGFSNVRELYQKIAECYEFPAEEN 84 (85)
Q Consensus 61 ~gFsnvkELY~kIae~f~i~p~e~ 84 (85)
-||+|..-.+..--+.+|++|.+.
T Consensus 243 ~Gf~~~s~F~r~Fkk~~G~tP~~y 266 (276)
T 3gbg_A 243 SGFASVSYFSTVFKSTMNVAPSEY 266 (276)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHH
T ss_pred hCCCCHHHHHHHHHHHHCcCHHHH
Confidence 367777777777777777777654
Done!