RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16017
         (85 letters)



>gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional.
          Length = 448

 Score = 26.6 bits (59), Expect = 1.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 32  KSPAPVTEDSKPKLIFHCQLAHGSPTGLISG-FSNVRELYQKIAECYE 78
           + PAP+ E+ K K+I   ++    P  LI      +RE   + AE  E
Sbjct: 378 RPPAPIAEEIKKKIIGDEEVITCRPADLIEPQLEKLREEIAEYAESEE 425


>gnl|CDD|145067 pfam01718, Orbi_NS1, Orbivirus non-structural protein NS1, or
           hydrophobic tubular protein.  This family consists of
           orbivirus non-structural protein NS1, or hydrophobic
           tubular protein. NS1 has no specific function in virus
           replication, it is however thought to play a role in
           transport of mature virus particles from virus inclusion
           bodies to the cell membrane. Orbivirus are part of the
           larger reoviridae which have a dsRNA genome of at least
           10 segments encoding at least 10 viral proteins;
           orbivirus found in this family include bluetongue virus,
           and African horsesickness virus.
          Length = 546

 Score = 25.8 bits (57), Expect = 3.2
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 3   LFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSK 42
           +F  KP+ D   +D +++G     I  G        ED  
Sbjct: 466 IFGYKPEADGRYIDWDDLGTFLDIILKGE--DLSELEDED 503


>gnl|CDD|153427 cd07998, WGR_DNA_ligase, WGR domain of bacterial DNA ligases.
          The WGR domain is found in a small family of predicted
          bacterial DNA ligases. It has been called WGR after the
          most conserved central motif of the domain. The domain
          typically occurs in together with an ATP-dependent DNA
          ligase domain, and is between 70 and 80 residues in
          length. It has been proposed to function as a nucleic
          acid binding domain.
          Length = 77

 Score = 24.2 bits (53), Expect = 6.3
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 7  KPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFH 48
              DD  + N   G   S +  GTK+ APVT ++  K IF 
Sbjct: 21 FEVSDDGYVVNFRYGRRGSALREGTKTVAPVTLEAAEK-IFD 61


>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor
           (ARF-GEF); Provisional.
          Length = 1780

 Score = 24.4 bits (53), Expect = 9.8
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 3   LFTRKPKKD-DHLLDNNNVGEHKSKI 27
           LF RKPKK  + L++ N VGE   +I
Sbjct: 626 LFNRKPKKGIEFLINANKVGESPEEI 651


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0761    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,196,194
Number of extensions: 315384
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 5
Length of query: 85
Length of database: 10,937,602
Length adjustment: 53
Effective length of query: 32
Effective length of database: 8,586,840
Effective search space: 274778880
Effective search space used: 274778880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)