RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16017
         (85 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.039
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 6/44 (13%)

Query: 35  APVTEDSKPKLIFHCQLAHGSPTGLISGFS--NVRELYQKIAEC 76
            P+   S P LI   QLAH   T  + GF+   +R   +     
Sbjct: 234 IPI---SCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.8 bits (63), Expect = 0.14
 Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 9/30 (30%)

Query: 22 EHKSKIYNGTKSPAPVTEDSKPKLIFHCQL 51
          +   K+Y      A    DS P L     +
Sbjct: 26 QASLKLY------AD---DSAPALAIKATM 46


>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
           center for structural genomics, JCSG; 2.60A {Deinococcus
           geothermalis dsm 11300}
          Length = 423

 Score = 25.4 bits (56), Expect = 2.2
 Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 1/44 (2%)

Query: 37  VTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFP 80
              D   K I      + +P G        R L    A   +F 
Sbjct: 167 AGTDPSVKGI-LFVPTYSNPGGETISLEKARRLAGLQAAAPDFT 209


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.8 bits (53), Expect = 4.5
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 64  SNVRELYQKIAECYEFP 80
            N   L++ I + Y  P
Sbjct: 440 ENEYALHRSIVDHYNIP 456


>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
           kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
           2ou7_A* 3fc2_A* 3thb_A*
          Length = 335

 Score = 24.6 bits (54), Expect = 4.5
 Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)

Query: 64  SNVRELYQKIAEC-YEFP 80
           S ++E Y +I +  Y  P
Sbjct: 244 SCLKETYLRIKKNEYSIP 261


>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1,
           selectivity residues, POLO-like K structure based drug
           design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo
           sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A*
           3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A*
           3db6_A* 3dbe_A* 3dbf_A*
          Length = 294

 Score = 24.5 bits (54), Expect = 4.6
 Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)

Query: 64  SNVRELYQKIAEC-YEFP 80
           S ++E Y +I +  Y  P
Sbjct: 218 SCLKETYLRIKKNEYSIP 235


>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A
           {Streptomyces} PDB: 3gjb_A*
          Length = 319

 Score = 24.3 bits (52), Expect = 6.2
 Identities = 4/11 (36%), Positives = 5/11 (45%)

Query: 45  LIFHCQLAHGS 55
           +IF     H S
Sbjct: 232 VIFWSNTMHAS 242


>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A
           {Virgibacillus salexigens}
          Length = 310

 Score = 24.0 bits (52), Expect = 7.6
 Identities = 4/11 (36%), Positives = 5/11 (45%)

Query: 45  LIFHCQLAHGS 55
            +F     HGS
Sbjct: 240 TLFESNTMHGS 250


>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK,
           STK18, PSI, structural genomics, protein structure
           initiative; HET: ANP; 2.25A {Homo sapiens}
          Length = 278

 Score = 24.0 bits (53), Expect = 7.7
 Identities = 5/18 (27%), Positives = 7/18 (38%), Gaps = 1/18 (5%)

Query: 64  SNVRELYQKIAEC-YEFP 80
             V+    K+    YE P
Sbjct: 215 DTVKNTLNKVVLADYEMP 232


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,230,001
Number of extensions: 57909
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 14
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)