BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16018
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z254|GIPC1_RAT PDZ domain-containing protein GIPC1 OS=Rattus norvegicus GN=Gipc1
PE=1 SV=2
Length = 333
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 13/97 (13%)
Query: 1 MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSP-------------APVTEDSKPKLIF 47
MPL + KK L++N +S + G P P +P+L+F
Sbjct: 1 MPLGLGRRKKAPPLVENEEAEPSRSGLGVGEPGPLGGSGAGESQMGLPPPPASLRPRLVF 60
Query: 48 HCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
H QLAHGSPTG I GF+NV+ELY KIAE + PA EV
Sbjct: 61 HTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPAAEV 97
>sp|Q9Z0G0|GIPC1_MOUSE PDZ domain-containing protein GIPC1 OS=Mus musculus GN=Gipc1 PE=1
SV=1
Length = 333
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 1 MPLFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKL-------------IF 47
MPL + KK L++N +S + G P + + ++ +F
Sbjct: 1 MPLGLGRRKKAPPLVENEEAEPSRSGLGVGEPGPLGGSAAGESQMGLPPPPAALRPRLVF 60
Query: 48 HCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
H QLAHGSPTG I GF+NV+ELY KIAE + PA EV
Sbjct: 61 HTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPAAEV 97
>sp|Q8R5M0|GIPC3_MOUSE PDZ domain-containing protein GIPC3 OS=Mus musculus GN=Gipc3 PE=1
SV=1
Length = 297
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 30 GTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
T+ PA ++P+L+F QLAHGSPTG I GF+NVRELY KIAE + E+
Sbjct: 11 ATEPPA----RARPRLVFRTQLAHGSPTGRIEGFTNVRELYAKIAEAFGIAPTEI 61
>sp|O14908|GIPC1_HUMAN PDZ domain-containing protein GIPC1 OS=Homo sapiens GN=GIPC1 PE=1
SV=2
Length = 333
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/39 (66%), Positives = 30/39 (76%)
Query: 46 IFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
+FH QLAHGSPTG I GF+NV+ELY KIAE + P EV
Sbjct: 59 VFHTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEV 97
>sp|Q1JQD4|GIPC2_BOVIN PDZ domain-containing protein GIPC2 OS=Bos taurus GN=GIPC2 PE=2
SV=1
Length = 313
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 1 MPLFTRKPKKDDHLLDNNNV-GEHKSKIYNGTKSP-APVTEDSKPKLIFHCQLAHGSPTG 58
MPL R+ KK + + V GEH SP AP +L+FH QLAHGS TG
Sbjct: 1 MPLGLRRKKKFNTKETSRLVEGEHTDAAVRSLPSPPAPAR-----RLVFHTQLAHGSATG 55
Query: 59 LISGFSNVRELYQKIAECYEFPAEEV 84
+ FS+++ELY KIA +E P E+
Sbjct: 56 RVENFSSIQELYAKIAGVFEIPPSEI 81
>sp|Q8TF64|GIPC3_HUMAN PDZ domain-containing protein GIPC3 OS=Homo sapiens GN=GIPC3 PE=1
SV=1
Length = 312
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/40 (62%), Positives = 29/40 (72%)
Query: 45 LIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
L+F QLAHGSPTG I GF+NVRELY KIAE + E+
Sbjct: 37 LVFRTQLAHGSPTGKIEGFTNVRELYAKIAEAFGIAPTEI 76
>sp|Q8TF65|GIPC2_HUMAN PDZ domain-containing protein GIPC2 OS=Homo sapiens GN=GIPC2 PE=1
SV=1
Length = 315
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 44 KLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEV 84
+L+FH QLAHGS TG + GFS+++ELY +IA +E E+
Sbjct: 41 RLVFHAQLAHGSATGRVEGFSSIQELYAQIAGAFEISPSEI 81
>sp|Q9Z2H7|GIPC2_MOUSE PDZ domain-containing protein GIPC2 OS=Mus musculus GN=Gipc2 PE=1
SV=1
Length = 314
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 21 GEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFP 80
GE S PAP KL+FH QLAHGS TG + FS++ ELY KIA +E
Sbjct: 23 GERSSGSQGVPGPPAPAR-----KLVFHAQLAHGSATGRVEDFSSISELYAKIAGVFEIA 77
Query: 81 AEEV 84
E+
Sbjct: 78 PSEI 81
>sp|Q498D9|GIPC2_RAT PDZ domain-containing protein GIPC2 OS=Rattus norvegicus GN=Gipc2
PE=2 SV=1
Length = 314
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 1 MPLFTRKPKKDDHLLDNNNV--GEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTG 58
MPL R KK + + GE PAP +L+FH QLAHGS TG
Sbjct: 1 MPLGLRGKKKAAKSKETARLVEGERSGGSQGVPGPPAPAR-----RLVFHAQLAHGSATG 55
Query: 59 LISGFSNVRELYQKIAECYEFPAEEV 84
+ FS++ ELY KIA +E E+
Sbjct: 56 RVEDFSSISELYAKIAGVFEIAPSEI 81
>sp|C5PBM5|MTNA_COCP7 Methylthioribose-1-phosphate isomerase OS=Coccidioides posadasii
(strain C735) GN=MRI1 PE=3 SV=1
Length = 390
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 16 DNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAE 75
DN ++GEH + + +P+ V EDSK ++ HC + G + +R L++K
Sbjct: 145 DNRSIGEHGAN-WIVANTPSGV-EDSKLCILTHCNTGSLATAGYGTALGIIRHLHEKSQL 202
Query: 76 CYEFPAE 82
C+ + E
Sbjct: 203 CHAYCTE 209
>sp|O28255|HIS82_ARCFU Histidinol-phosphate aminotransferase 2 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=hisC2 PE=3 SV=1
Length = 342
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 27 IYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEF 79
++ G + V + +PKL+F C + +PT G S RE+ QK+AE E+
Sbjct: 127 VFEGYRVDPDVIAEERPKLVFLC--SPNNPT----GNSLSREIVQKVAESAEY 173
>sp|Q8YGG7|GLYA_BRUME Serine hydroxymethyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glyA PE=3 SV=2
Length = 438
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 18/68 (26%)
Query: 9 KKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFHCQLAHGSPTGLISGFSNVRE 68
+KDDHLLD + V A + ++KPKLI LA G+ I + RE
Sbjct: 160 RKDDHLLDMDEV--------------ARLARENKPKLI----LAGGTAYSRIWDWKRFRE 201
Query: 69 LYQKIAEC 76
+ ++ C
Sbjct: 202 IADEVGAC 209
>sp|B3P3W1|SPNE_DROER Probable ATP-dependent RNA helicase spindle-E OS=Drosophila erecta
GN=spn-E PE=3 SV=1
Length = 1432
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 43 PKLIFHCQLAHGSPTGLISGFSN----VRELYQKIAEC 76
P +F C+LAH P+ ++SG + +L + +A+C
Sbjct: 1004 PPRVFECRLAHVQPSSVVSGNNRWPTAANDLLKSVAKC 1041
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,268,521
Number of Sequences: 539616
Number of extensions: 1463316
Number of successful extensions: 2345
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2336
Number of HSP's gapped (non-prelim): 14
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)