Query psy16018
Match_columns 89
No_of_seqs 77 out of 79
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 18:49:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xrx_A SEQA protein; protein f 83.1 0.58 2E-05 28.8 1.8 23 66-88 7-32 (50)
2 3fmt_A Protein SEQA; protein-D 79.6 0.76 2.6E-05 33.6 1.7 23 66-88 7-32 (162)
3 3fym_A Putative uncharacterize 74.0 2.3 8E-05 27.6 2.7 23 66-88 50-72 (130)
4 1fc3_A SPO0A; response regulat 73.6 0.93 3.2E-05 30.9 0.7 24 66-89 47-70 (120)
5 3omt_A Uncharacterized protein 70.0 2.5 8.4E-05 23.8 1.9 20 68-87 51-70 (73)
6 3v6c_B Ubiquitin; structural g 68.2 11 0.00039 22.5 4.7 27 58-84 32-58 (91)
7 3s8q_A R-M controller protein; 68.1 3.5 0.00012 23.6 2.3 20 68-87 54-73 (82)
8 1ndd_A NEDD8, protein (ubiquit 67.5 4.2 0.00014 22.7 2.5 26 59-84 16-41 (76)
9 2ewt_A BLDD, putative DNA-bind 67.3 3.1 0.00011 22.9 1.9 19 68-86 53-71 (71)
10 3f6w_A XRE-family like protein 67.1 3.5 0.00012 23.6 2.1 21 68-88 57-77 (83)
11 2kvr_A Ubiquitin carboxyl-term 66.9 11 0.00037 25.4 4.9 26 59-84 61-86 (130)
12 3t76_A VANU, transcriptional r 66.5 2.6 9E-05 26.2 1.6 19 68-86 66-84 (88)
13 2r1j_L Repressor protein C2; p 66.5 4 0.00014 22.0 2.2 19 68-86 48-66 (68)
14 3qq6_A HTH-type transcriptiona 66.0 3.8 0.00013 23.9 2.2 20 68-87 54-73 (78)
15 3a9j_A Ubiquitin; protein comp 65.8 4.8 0.00016 22.5 2.5 26 59-84 16-41 (76)
16 2ofy_A Putative XRE-family tra 65.8 4.2 0.00014 23.5 2.3 20 68-87 58-77 (86)
17 3bs3_A Putative DNA-binding pr 65.7 3.5 0.00012 22.9 1.9 21 67-87 52-72 (76)
18 3mn2_A Probable ARAC family tr 65.7 5.9 0.0002 24.0 3.1 29 61-89 79-107 (108)
19 2wus_R RODZ, putative uncharac 65.3 3.9 0.00013 26.3 2.3 23 66-88 54-76 (112)
20 1y7y_A C.AHDI; helix-turn-heli 65.3 3.7 0.00013 22.6 1.9 19 68-86 56-74 (74)
21 2k9q_A Uncharacterized protein 64.7 4.5 0.00015 23.0 2.3 20 68-87 45-64 (77)
22 1wx7_A Ubiquilin 3; ubiquitin- 64.3 10 0.00034 23.6 4.0 31 54-84 27-57 (106)
23 3n3k_B Ubiquitin; hydrolase, p 63.4 5.5 0.00019 23.0 2.5 26 59-84 19-44 (85)
24 3b7h_A Prophage LP1 protein 11 63.4 4.4 0.00015 22.6 2.1 20 68-87 51-70 (78)
25 3kz3_A Repressor protein CI; f 62.9 3.7 0.00013 23.6 1.7 21 68-88 55-75 (80)
26 2b5a_A C.BCLI; helix-turn-heli 61.6 5.7 0.00019 22.0 2.3 20 68-87 53-72 (77)
27 2bwf_A Ubiquitin-like protein 61.5 6.3 0.00022 22.3 2.5 26 59-84 19-44 (77)
28 2uyz_B Small ubiquitin-related 61.3 5.4 0.00018 23.0 2.2 26 59-84 19-44 (79)
29 2k9s_A Arabinose operon regula 61.3 8.1 0.00028 23.4 3.1 28 61-88 79-106 (107)
30 2dzi_A Ubiquitin-like protein 60.6 5.5 0.00019 22.7 2.2 27 58-84 22-48 (81)
31 3qwg_A ESX-1 secretion-associa 60.6 4.8 0.00016 26.4 2.1 20 68-87 60-79 (123)
32 2xi8_A Putative transcription 60.3 5 0.00017 21.4 1.8 19 68-86 44-62 (66)
33 3mtn_B UBA80, ubcep1, ubiquiti 59.8 7.1 0.00024 22.4 2.6 26 59-84 19-44 (85)
34 1sif_A Ubiquitin; hydrophobic 59.5 7 0.00024 23.5 2.6 26 59-84 25-50 (88)
35 3k9o_B Ubiquitin, UBB+1; E2-25 59.3 6.9 0.00024 23.4 2.5 26 59-84 17-42 (96)
36 3dbh_I NEDD8; cell cycle, acti 59.1 23 0.0008 20.4 5.1 41 44-84 12-53 (88)
37 1adr_A P22 C2 repressor; trans 58.9 6.9 0.00024 21.5 2.3 20 68-87 48-67 (76)
38 2pjh_A Protein NPL4, nuclear p 58.7 6.2 0.00021 24.2 2.3 23 60-82 20-42 (80)
39 1neq_A DNA-binding protein NER 57.5 7.2 0.00024 23.5 2.4 16 72-87 53-68 (74)
40 3g5g_A Regulatory protein; tra 57.5 6.7 0.00023 24.2 2.3 20 68-87 71-90 (99)
41 3r1f_A ESX-1 secretion-associa 57.3 5.8 0.0002 26.3 2.1 20 68-87 62-81 (135)
42 3oou_A LIN2118 protein; protei 57.0 9.5 0.00033 23.1 2.9 29 61-89 80-108 (108)
43 1yx5_B Ubiquitin; proteasome, 56.2 8.3 0.00028 23.4 2.5 26 59-84 16-41 (98)
44 1wh3_A 59 kDa 2'-5'-oligoadeny 56.0 7 0.00024 22.8 2.1 27 58-84 22-48 (87)
45 3phx_B Ubiquitin-like protein 55.6 11 0.00036 21.7 2.8 26 59-84 20-45 (79)
46 2kk8_A Uncharacterized protein 54.2 14 0.00048 22.3 3.3 26 58-83 25-50 (84)
47 1v86_A DNA segment, CHR 7, way 53.4 26 0.0009 21.4 4.6 41 43-83 16-56 (95)
48 1r69_A Repressor protein CI; g 53.3 7.1 0.00024 21.1 1.7 17 70-86 45-61 (69)
49 2faz_A Ubiquitin-like containi 53.3 11 0.00038 21.5 2.7 25 60-84 21-45 (78)
50 3mkl_A HTH-type transcriptiona 52.9 12 0.00042 23.1 3.0 28 61-88 81-108 (120)
51 1wf9_A NPL4 family protein; be 52.0 7.5 0.00026 24.6 1.9 22 62-83 26-47 (107)
52 2ef8_A C.ECOT38IS, putative tr 51.9 8.1 0.00028 21.7 1.9 24 64-87 53-76 (84)
53 3f52_A CLP gene regulator (CLG 51.5 9.5 0.00033 23.3 2.3 20 68-87 71-90 (117)
54 3oio_A Transcriptional regulat 51.5 14 0.00049 22.5 3.1 28 61-88 82-109 (113)
55 2kpj_A SOS-response transcript 51.3 8.8 0.0003 22.7 2.0 21 67-87 51-71 (94)
56 1zug_A Phage 434 CRO protein; 50.8 8.3 0.00028 20.9 1.7 18 70-87 47-64 (71)
57 2l7r_A Ubiquitin-like protein 50.7 12 0.00039 22.9 2.6 26 59-84 33-58 (93)
58 1lmb_3 Protein (lambda repress 50.5 8.5 0.00029 22.3 1.8 20 68-87 60-79 (92)
59 3vk0_A NHTF, transcriptional r 50.2 9.3 0.00032 23.5 2.1 20 68-87 64-83 (114)
60 1v5o_A 1700011N24RIK protein; 49.8 12 0.00041 23.2 2.6 26 59-84 27-52 (102)
61 3m21_A Probable tautomerase HP 49.7 8.5 0.00029 22.0 1.7 20 66-85 23-42 (67)
62 1otf_A 4-oxalocrotonate tautom 49.5 9.9 0.00034 20.7 1.9 19 67-85 21-39 (62)
63 1wyw_B Ubiquitin-like protein 49.2 11 0.00036 23.2 2.2 27 58-84 36-62 (97)
64 4dwf_A HLA-B-associated transc 48.7 14 0.00046 21.8 2.6 26 59-84 21-46 (90)
65 1uh6_A Ubiquitin-like 5; beta- 48.5 53 0.0018 21.3 6.2 26 59-84 44-69 (100)
66 4fbj_B NEDD8; effector-HOST ta 48.4 13 0.00046 22.2 2.6 26 59-84 16-41 (88)
67 3mb2_A 4-oxalocrotonate tautom 48.4 8.8 0.0003 22.3 1.7 19 67-85 22-40 (72)
68 2x4k_A 4-oxalocrotonate tautom 48.1 9.7 0.00033 20.5 1.7 20 66-85 23-42 (63)
69 3lfp_A CSP231I C protein; tran 48.0 11 0.00037 22.5 2.1 19 68-86 48-66 (98)
70 1wy8_A NP95-like ring finger p 47.0 11 0.00039 22.0 2.0 25 60-84 26-50 (89)
71 1yqb_A Ubiquilin 3; structural 46.8 30 0.001 21.4 4.1 31 54-84 32-62 (100)
72 4eew_A Large proline-rich prot 46.3 16 0.00054 21.5 2.6 27 58-84 32-58 (88)
73 2hj8_A Interferon-induced 17 k 46.2 11 0.00038 22.5 1.9 26 59-84 20-45 (88)
74 1v6e_A Cytoskeleton-associated 45.8 15 0.0005 22.5 2.5 27 57-83 22-48 (95)
75 2klc_A Ubiquilin-1; ubiquitin- 45.7 14 0.00049 22.9 2.5 27 58-84 39-65 (101)
76 1wx8_A Riken cDNA 4931431F19; 45.5 12 0.0004 22.6 1.9 27 58-84 31-57 (96)
77 3op9_A PLI0006 protein; struct 45.4 13 0.00045 22.5 2.2 19 68-86 52-70 (114)
78 3dml_A Putative uncharacterize 45.2 13 0.00044 24.4 2.2 34 41-77 76-109 (116)
79 2kd0_A LRR repeats and ubiquit 44.7 14 0.00046 22.3 2.2 25 59-83 27-51 (85)
80 2kdi_A Ubiquitin, vacuolar pro 44.4 15 0.00053 23.4 2.5 26 59-84 25-50 (114)
81 2kan_A Uncharacterized protein 44.4 13 0.00044 22.9 2.1 30 55-84 26-55 (94)
82 1bl0_A Protein (multiple antib 44.3 20 0.00068 22.5 3.0 27 61-87 86-112 (129)
83 4hcn_B Polyubiquitin, ubiquiti 44.2 17 0.00058 22.2 2.6 27 58-84 37-63 (98)
84 3lsg_A Two-component response 43.9 18 0.00061 21.6 2.6 24 61-84 78-101 (103)
85 1e0g_A Membrane-bound lytic mu 43.7 13 0.00044 19.4 1.7 17 70-86 13-29 (48)
86 3ry0_A Putative tautomerase; o 43.6 13 0.00046 20.9 1.9 19 67-85 21-39 (65)
87 3abf_A 4-oxalocrotonate tautom 43.6 12 0.00041 20.5 1.7 19 67-85 22-40 (64)
88 1b0n_A Protein (SINR protein); 43.1 15 0.0005 21.8 2.1 19 68-86 45-63 (111)
89 1ttn_A DC-UBP, dendritic cell- 43.0 15 0.00052 22.8 2.3 43 42-84 21-64 (106)
90 2opa_A Probable tautomerase YW 41.3 14 0.00049 20.0 1.7 18 68-85 22-39 (61)
91 3bd1_A CRO protein; transcript 41.2 13 0.00044 21.2 1.6 20 68-87 40-61 (79)
92 3b08_A Polyubiquitin-C, ubiqui 41.1 22 0.00076 22.3 2.8 26 58-83 15-40 (152)
93 3b1l_X E3 ubiquitin-protein li 47.1 5.7 0.00019 22.6 0.0 26 59-84 16-41 (76)
94 4a3p_A Ubiquitin carboxyl-term 40.7 14 0.00047 26.3 2.0 26 57-82 143-168 (217)
95 3ivp_A Putative transposon-rel 39.3 16 0.00056 22.6 2.0 19 68-86 55-73 (126)
96 3m63_B Ubiquitin domain-contai 39.2 16 0.00055 22.8 1.9 27 58-84 42-68 (101)
97 3m62_B UV excision repair prot 38.8 20 0.00067 22.5 2.3 26 59-84 17-42 (106)
98 2cx6_A Hypothetical protein YH 38.8 20 0.00067 22.5 2.3 21 61-81 9-29 (90)
99 3g2b_A Coenzyme PQQ synthesis 38.5 25 0.00084 22.4 2.8 29 59-87 51-79 (95)
100 3ej9_A Alpha-subunit of trans- 38.4 17 0.0006 21.5 1.9 19 67-85 22-40 (76)
101 3ipw_A Hydrolase TATD family p 37.4 28 0.00095 26.4 3.3 36 52-87 276-311 (325)
102 3kxa_A NGO0477 protein, putati 36.1 20 0.00069 23.5 2.1 21 68-88 111-131 (141)
103 1j8c_A Ubiquitin-like protein 36.0 88 0.003 20.2 5.7 27 57-83 45-71 (125)
104 3jyu_A Ubiquitin carboxyl-term 35.7 18 0.00062 25.9 2.0 26 57-82 155-180 (231)
105 1wxv_A BAG-family molecular ch 35.6 18 0.00063 21.6 1.7 20 64-83 32-51 (92)
106 3m20_A 4-oxalocrotonate tautom 34.7 15 0.00052 20.7 1.2 19 67-85 16-38 (62)
107 1gyx_A YDCE, B1461, hypothetic 34.4 22 0.00076 20.8 1.9 19 67-85 22-40 (76)
108 3trb_A Virulence-associated pr 34.3 25 0.00084 22.0 2.2 19 68-86 57-75 (104)
109 3pvv_A Chromosomal replication 34.0 31 0.001 22.3 2.7 22 65-86 6-27 (101)
110 3cec_A Putative antidote prote 33.6 27 0.00092 20.8 2.2 19 68-86 61-79 (104)
111 2es7_A Q8ZP25_salty, putative 33.5 33 0.0011 22.2 2.8 42 41-85 91-132 (142)
112 2za4_B Barstar; protein-protei 33.5 23 0.00079 21.8 2.0 20 61-80 9-28 (90)
113 3sj5_A Methyl-accepting chemot 33.3 25 0.00087 24.4 2.4 23 66-88 48-70 (188)
114 1v5t_A 8430435I17RIK protein; 33.2 28 0.00096 21.0 2.3 25 59-83 23-47 (90)
115 3gnj_A Thioredoxin domain prot 33.1 26 0.0009 19.8 2.0 33 42-77 77-109 (111)
116 3mlf_A Transcriptional regulat 32.9 18 0.00062 22.5 1.4 19 68-86 66-84 (111)
117 3u30_A Ubiquitin, linear DI-ub 32.8 43 0.0015 22.1 3.3 27 57-83 34-60 (172)
118 1x57_A Endothelial differentia 32.6 15 0.00053 21.3 1.0 18 68-85 56-73 (91)
119 2wyq_A HHR23A, UV excision rep 32.5 34 0.0012 19.6 2.5 27 58-84 20-49 (85)
120 1we6_A Splicing factor, putati 32.4 28 0.00095 21.7 2.2 26 59-84 46-72 (111)
121 2kii_A Putative uncharacterize 32.3 27 0.00094 23.9 2.4 24 65-88 46-69 (181)
122 2kzr_A Ubiquitin thioesterase 32.1 27 0.00092 20.8 2.0 23 61-83 18-40 (86)
123 1wgd_A Homocysteine-responsive 32.1 25 0.00087 21.0 1.9 22 62-83 28-51 (93)
124 1oey_A P67-PHOX, neutrophil cy 32.0 25 0.00086 22.6 2.0 22 64-85 24-45 (83)
125 2ojr_A Ubiquitin; lanthide-bin 32.0 27 0.00091 21.9 2.1 27 58-84 50-76 (111)
126 1wju_A NEDD8 ultimate buster-1 31.9 20 0.0007 23.3 1.6 25 60-84 36-60 (100)
127 1tc3_C Protein (TC3 transposas 31.9 29 0.001 16.9 1.9 17 70-86 24-40 (51)
128 2djp_A Hypothetical protein SB 31.8 26 0.00088 20.4 1.9 18 69-86 25-42 (77)
129 1we7_A SF3A1 protein; structur 29.4 30 0.001 21.8 2.0 25 59-83 51-75 (115)
130 1x1m_A Ubiquitin-like protein 29.3 22 0.00074 22.2 1.3 20 64-83 45-66 (107)
131 2dzm_A FAS-associated factor 1 29.2 45 0.0016 21.3 2.9 40 44-83 9-48 (100)
132 1t0y_A Tubulin folding cofacto 29.1 33 0.0011 22.1 2.2 27 57-83 21-47 (122)
133 3kq0_A Alpha-1-acid glycoprote 28.6 21 0.00071 23.8 1.2 21 65-85 136-156 (192)
134 3rt3_B Ubiquitin-like protein 28.0 47 0.0016 21.4 2.8 25 59-83 18-42 (159)
135 1wgg_A Ubiquitin carboxyl-term 28.0 36 0.0012 21.0 2.2 25 59-83 23-47 (96)
136 2gpe_A Bifunctional protein PU 27.9 44 0.0015 18.2 2.3 23 65-87 13-35 (52)
137 3tfg_A ALR2278 protein; heme-b 27.6 37 0.0013 23.4 2.4 22 67-88 49-70 (189)
138 1y9q_A Transcriptional regulat 27.5 33 0.0011 22.5 2.0 20 68-87 54-73 (192)
139 3mf7_A CIS-3-chloroacrylic aci 27.4 43 0.0015 22.7 2.7 37 43-85 61-101 (149)
140 1uel_A HHR23B, UV excision rep 27.3 37 0.0013 20.4 2.1 25 59-83 16-43 (95)
141 3vdz_A Ubiquitin-40S ribosomal 27.2 43 0.0015 21.0 2.5 27 58-84 50-76 (111)
142 4b6w_A Tubulin-specific chaper 27.2 40 0.0014 20.7 2.3 26 58-83 19-44 (86)
143 2k9i_A Plasmid PRN1, complete 27.2 42 0.0014 18.0 2.2 22 67-88 18-42 (55)
144 2wiu_B HTH-type transcriptiona 26.2 13 0.00045 21.1 -0.1 19 68-86 55-73 (88)
145 2eby_A Putative HTH-type trans 26.0 43 0.0015 20.1 2.2 19 68-86 54-72 (113)
146 4euy_A Uncharacterized protein 25.9 37 0.0013 19.4 1.9 33 42-77 72-104 (105)
147 3plu_A Ubiquitin-like modifier 25.9 42 0.0014 21.8 2.3 26 59-84 37-62 (93)
148 3umc_A Haloacid dehalogenase; 25.6 31 0.0011 22.1 1.6 21 65-85 174-194 (254)
149 2o8x_A Probable RNA polymerase 25.1 40 0.0014 18.3 1.8 17 69-85 33-49 (70)
150 4dbg_A Ranbp-type and C3HC4-ty 24.9 57 0.0019 21.4 2.8 28 57-84 40-67 (105)
151 3ddh_A Putative haloacid dehal 24.7 34 0.0012 21.1 1.6 20 66-85 159-178 (234)
152 3gbg_A TCP pilus virulence reg 24.7 62 0.0021 22.0 3.1 28 61-88 243-270 (276)
153 3kbb_A Phosphorylated carbohyd 24.3 32 0.0011 21.8 1.4 20 66-85 142-161 (216)
154 2om6_A Probable phosphoserine 24.3 35 0.0012 21.3 1.6 20 66-85 160-179 (235)
155 1mww_A Hypothetical protein HI 24.1 32 0.0011 21.7 1.4 19 66-84 19-37 (128)
156 3u26_A PF00702 domain protein; 23.9 36 0.0012 21.4 1.6 20 66-85 157-176 (234)
157 2bnm_A Epoxidase; oxidoreducta 23.8 38 0.0013 22.1 1.7 19 69-87 55-73 (198)
158 3n4h_A Putative tautomerase; C 23.7 37 0.0013 22.0 1.7 20 66-85 21-40 (148)
159 3qnm_A Haloacid dehalogenase-l 23.5 37 0.0013 21.2 1.6 20 66-85 164-183 (240)
160 2v4i_A Glutamate N-acetyltrans 23.5 18 0.00063 26.1 0.2 25 61-85 76-100 (173)
161 1uiz_A MIF, macrophage migrati 23.4 40 0.0014 20.8 1.7 20 66-85 20-39 (115)
162 2pib_A Phosphorylated carbohyd 23.1 35 0.0012 20.8 1.4 20 66-85 142-161 (216)
163 2kjr_A CG11242; UBL, ubiquitin 23.1 51 0.0017 20.6 2.2 28 56-83 30-57 (95)
164 3vay_A HAD-superfamily hydrola 23.1 38 0.0013 21.3 1.6 20 66-85 157-176 (230)
165 1zzm_A Putative deoxyribonucle 23.0 1.2E+02 0.004 20.4 4.2 30 58-87 218-247 (259)
166 2x48_A CAG38821; archeal virus 22.9 51 0.0017 17.4 1.9 17 70-86 34-50 (55)
167 3gg7_A Uncharacterized metallo 22.6 64 0.0022 23.3 2.9 31 57-87 203-233 (254)
168 2xcz_A Possible ATLS1-like lig 22.4 42 0.0015 20.6 1.7 20 66-85 20-39 (115)
169 2cpg_A REPA protein, transcrip 22.1 67 0.0023 16.6 2.3 20 68-87 15-34 (45)
170 3umg_A Haloacid dehalogenase; 21.8 42 0.0014 21.2 1.6 20 66-85 171-190 (254)
171 1jko_C HIN recombinase, DNA-in 21.8 60 0.0021 16.1 2.0 17 70-86 24-40 (52)
172 3um9_A Haloacid dehalogenase, 21.6 42 0.0014 21.0 1.6 20 66-85 154-173 (230)
173 3u3w_A Transcriptional activat 21.4 53 0.0018 21.9 2.2 20 68-87 47-66 (293)
174 1oaz_A Thioredoxin 1; immune s 21.4 61 0.0021 19.6 2.3 32 42-76 90-121 (123)
175 2kj6_A Tubulin folding cofacto 21.4 59 0.002 20.5 2.3 28 56-83 29-56 (97)
176 2ah5_A COG0546: predicted phos 21.3 43 0.0015 21.5 1.6 22 64-85 137-158 (210)
177 3die_A Thioredoxin, TRX; elect 21.3 55 0.0019 18.2 1.9 32 42-76 74-105 (106)
178 2ay0_A Bifunctional PUTA prote 21.3 73 0.0025 18.4 2.5 23 65-87 13-35 (58)
179 3s6j_A Hydrolase, haloacid deh 21.3 40 0.0014 21.0 1.4 20 66-85 149-168 (233)
180 2ylm_A Ubiquitin carboxyl-term 21.2 50 0.0017 26.6 2.3 26 59-84 41-66 (530)
181 2os5_A Acemif; macrophage migr 21.2 46 0.0016 20.7 1.7 20 66-85 20-39 (119)
182 4dcc_A Putative haloacid dehal 20.9 44 0.0015 21.5 1.6 19 67-85 176-194 (229)
183 3m9j_A Thioredoxin; oxidoreduc 20.4 65 0.0022 17.9 2.1 30 42-75 74-103 (105)
184 1vra_A Arginine biosynthesis b 20.4 23 0.00079 26.4 0.2 25 61-85 107-131 (208)
185 1hfo_A Migration inhibitory fa 20.4 49 0.0017 20.2 1.7 19 67-85 73-95 (113)
186 4ex6_A ALNB; modified rossman 20.3 43 0.0015 21.2 1.4 20 66-85 162-181 (237)
187 3e58_A Putative beta-phosphogl 20.3 44 0.0015 20.3 1.4 19 67-85 148-166 (214)
188 1l1o_C Replication protein A 7 20.1 83 0.0028 21.6 3.0 42 39-86 73-114 (181)
189 3b64_A Macrophage migration in 20.1 49 0.0017 20.3 1.7 19 67-85 74-96 (112)
190 3mc1_A Predicted phosphatase, 20.1 47 0.0016 20.8 1.6 21 65-85 143-163 (226)
No 1
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=83.15 E-value=0.58 Score=28.75 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.5
Q ss_pred hHHHHHHhh---hhhcCChhhHhhhc
Q psy16018 66 VRELYQKIA---ECYEFPAEEVSEDF 88 (89)
Q Consensus 66 vkELY~kIa---e~f~i~~~eIl~~~ 88 (89)
..|||+-|| ..++=+++||||.+
T Consensus 7 DdelY~YIas~t~~igEsaSdiLRRl 32 (50)
T 1xrx_A 7 DDELYSYIASHTKHIGESASDILRRM 32 (50)
T ss_dssp CHHHHHHHHTTCSSTTCCHHHHHHHH
T ss_pred cHHHHHHHHHhchhhccCHHHHHHHH
Confidence 479999999 67778999999964
No 2
>3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA replication; HET: 6MA; 2.98A {Escherichia coli}
Probab=79.61 E-value=0.76 Score=33.60 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.8
Q ss_pred hHHHHHHhh---hhhcCChhhHhhhc
Q psy16018 66 VRELYQKIA---ECYEFPAEEVSEDF 88 (89)
Q Consensus 66 vkELY~kIa---e~f~i~~~eIl~~~ 88 (89)
..|||+-|| +.+|=+++||||.+
T Consensus 7 DeeLYryIAs~Tq~IGESASdILRRL 32 (162)
T 3fmt_A 7 DDELYSYIASHTKHIGESRSDILRRM 32 (162)
T ss_dssp CHHHHHHHHTTCSSTTCCHHHHHHHH
T ss_pred cHHHHHHHHHhCcccCCCHHHHHHHH
Confidence 479999999 67777999999964
No 3
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=74.01 E-value=2.3 Score=27.63 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=19.9
Q ss_pred hHHHHHHhhhhhcCChhhHhhhc
Q psy16018 66 VRELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl~~~ 88 (89)
+++...+||++++++++++++++
T Consensus 50 ~~~~l~~ia~~L~v~~~~l~~~~ 72 (130)
T 3fym_A 50 SEGFIRKYASVVNIEPNQLIQAH 72 (130)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 34678999999999999999875
No 4
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=73.64 E-value=0.93 Score=30.94 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=20.7
Q ss_pred hHHHHHHhhhhhcCChhhHhhhcC
Q psy16018 66 VRELYQKIAECYEFPAEEVSEDFR 89 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl~~~~ 89 (89)
-|+||..||+.|+.+++.|=|+.|
T Consensus 47 tK~LYp~IA~k~~TT~s~VEraIR 70 (120)
T 1fc3_A 47 TKVLYPDIAKKYNTTASRVERAIR 70 (120)
T ss_dssp TTTHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 367999999999999999877654
No 5
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=70.03 E-value=2.5 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.9
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++.+
T Consensus 51 ~~l~~ia~~l~v~~~~l~~~ 70 (73)
T 3omt_A 51 ETLFDIAEALNVDVRELIVS 70 (73)
T ss_dssp HHHHHHHHHHTSCGGGGBCC
T ss_pred HHHHHHHHHHCcCHHHHhcC
Confidence 45679999999999999864
No 6
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=68.20 E-value=11 Score=22.47 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=23.5
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
=.|+.-.+|.+|-++|++.+++++++.
T Consensus 32 l~v~~~~TV~~LK~~I~~~~gip~~~q 58 (91)
T 3v6c_B 32 LEVEPSDTIENVKAKIQDKEGIPPDQQ 58 (91)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred EEECCCCCHHHHHHHHHhhhCCChhhE
Confidence 357788999999999999999998763
No 7
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=68.07 E-value=3.5 Score=23.57 Aligned_cols=20 Identities=15% Similarity=-0.012 Sum_probs=16.8
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++.+
T Consensus 54 ~~l~~ia~~l~v~~~~l~~~ 73 (82)
T 3s8q_A 54 KSLELIMKGLEVSDVVFFEM 73 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhcC
Confidence 45678999999999999863
No 8
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=67.53 E-value=4.2 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.1
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++..++|++++
T Consensus 16 ~v~~~~tv~~lK~~i~~~~~i~~~~q 41 (76)
T 1ndd_A 16 DIEPTDKVERIKERVEEKEGIPPQQQ 41 (76)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCChHHHHHHHHHHHHCcChHHE
Confidence 45666899999999999999998763
No 9
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=67.25 E-value=3.1 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=15.8
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|+++++++++
T Consensus 53 ~~l~~la~~l~v~~~~l~~ 71 (71)
T 2ewt_A 53 QRLAELADFYGVPVQELLP 71 (71)
T ss_dssp HHHHHHHHHHTSCGGGGCC
T ss_pred HHHHHHHHHHCcCHHHHcC
Confidence 4567899999999999864
No 10
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=67.08 E-value=3.5 Score=23.56 Aligned_cols=21 Identities=0% Similarity=-0.083 Sum_probs=17.7
Q ss_pred HHHHHhhhhhcCChhhHhhhc
Q psy16018 68 ELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~~ 88 (89)
+...+||++|++++++++..+
T Consensus 57 ~~l~~l~~~l~~~~~~l~~~~ 77 (83)
T 3f6w_A 57 IEFMDFCRGIGTDPYALLSKL 77 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 466789999999999998753
No 11
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=66.91 E-value=11 Score=25.44 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=22.9
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
+|-.=+++.+|++.||+.||+|+..+
T Consensus 61 rv~k~~~~~~~~~~va~~lg~~~~~~ 86 (130)
T 2kvr_A 61 KVLKNSSLAEFVQSLSQTMGFPQDQI 86 (130)
T ss_dssp ECCTTSBHHHHHHHHHHHHCCCGGGC
T ss_pred EEeccCcHHHHHHHHHHHhCCCcccE
Confidence 67777899999999999999998764
No 12
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=66.54 E-value=2.6 Score=26.15 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=16.1
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|+++++|+++
T Consensus 66 ~~l~kIa~~L~v~~~~L~~ 84 (88)
T 3t76_A 66 TVLLAICEYLNCDFGDIIE 84 (88)
T ss_dssp HHHHHHHHHHTCCGGGTCE
T ss_pred HHHHHHHHHHCcCHHHHhc
Confidence 4567899999999999875
No 13
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=66.48 E-value=4 Score=21.96 Aligned_cols=19 Identities=5% Similarity=0.120 Sum_probs=16.3
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|++++++++.
T Consensus 48 ~~l~~i~~~l~~~~~~l~~ 66 (68)
T 2r1j_L 48 ENLLALSKALQCSPDYLLK 66 (68)
T ss_dssp HHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHhc
Confidence 4568899999999999875
No 14
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=66.04 E-value=3.8 Score=23.85 Aligned_cols=20 Identities=5% Similarity=0.360 Sum_probs=17.2
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++..
T Consensus 54 ~~l~~ia~~l~v~~~~l~~~ 73 (78)
T 3qq6_A 54 QFLEKVSAVLDVSVHTLLDE 73 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHS
T ss_pred HHHHHHHHHHCcCHHHHhCC
Confidence 56789999999999999864
No 15
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=65.84 E-value=4.8 Score=22.49 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=21.9
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++.+++|++++
T Consensus 16 ~v~~~~tv~~lK~~i~~~~~i~~~~q 41 (76)
T 3a9j_A 16 EVEPSDTIENVKAKIQDKEGIPPDQQ 41 (76)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCCcHHHHHHHHHHHHCcCHHHe
Confidence 45666899999999999999998763
No 16
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=65.84 E-value=4.2 Score=23.46 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=17.1
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++.+
T Consensus 58 ~~l~~ia~~l~v~~~~l~~~ 77 (86)
T 2ofy_A 58 FTIAAVARVLDLSLDDVAAV 77 (86)
T ss_dssp HHHHHHHHHTTCCHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHhcc
Confidence 45678999999999999864
No 17
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=65.73 E-value=3.5 Score=22.88 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=16.8
Q ss_pred HHHHHHhhhhhcCChhhHhhh
Q psy16018 67 RELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 67 kELY~kIae~f~i~~~eIl~~ 87 (89)
.+...+||++|++++++++.+
T Consensus 52 ~~~l~~ia~~l~~~~~~l~~~ 72 (76)
T 3bs3_A 52 LDMLVKVAELLNVDPRQLING 72 (76)
T ss_dssp HHHHHHHHHHHTSCGGGGBC-
T ss_pred HHHHHHHHHHHCcCHHHHhcC
Confidence 345688999999999998753
No 18
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=65.71 E-value=5.9 Score=23.98 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=25.7
Q ss_pred cCccchHHHHHHhhhhhcCChhhHhhhcC
Q psy16018 61 SGFSNVRELYQKIAECYEFPAEEVSEDFR 89 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~~eIl~~~~ 89 (89)
-||+|..-++...-+.||++|.+..+..|
T Consensus 79 ~Gf~~~s~F~r~Fk~~~G~tP~~yr~~~~ 107 (108)
T 3mn2_A 79 CGFSNLGHFARDYRDMFGEKPSETLQRAR 107 (108)
T ss_dssp TTCCCHHHHHHHHHHHHSSCHHHHHHHTC
T ss_pred hCCCCHHHHHHHHHHHHCcChHHHHHhhC
Confidence 49999999999999999999999877653
No 19
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=65.34 E-value=3.9 Score=26.35 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=19.5
Q ss_pred hHHHHHHhhhhhcCChhhHhhhc
Q psy16018 66 VRELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl~~~ 88 (89)
+.++-.+||++|++++++++..+
T Consensus 54 ~~~~l~~iA~~Lgv~~~~L~~~~ 76 (112)
T 2wus_R 54 IKSYIKRYSEFLELSPDEMLKLY 76 (112)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHH
Confidence 45677899999999999998764
No 20
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=65.26 E-value=3.7 Score=22.59 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=15.4
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|++++++++.
T Consensus 56 ~~l~~l~~~l~~~~~~l~~ 74 (74)
T 1y7y_A 56 VNILKLATALDIEPRELFC 74 (74)
T ss_dssp HHHHHHHHHTTSCGGGGC-
T ss_pred HHHHHHHHHhCcCHHHHcC
Confidence 4567899999999999863
No 21
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=64.66 E-value=4.5 Score=22.99 Aligned_cols=20 Identities=5% Similarity=-0.007 Sum_probs=17.1
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++.+
T Consensus 45 ~~l~~ia~~l~v~~~~l~~~ 64 (77)
T 2k9q_A 45 VKYIAFLRSKGVDLNALFDR 64 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHhCc
Confidence 45678999999999999864
No 22
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.30 E-value=10 Score=23.57 Aligned_cols=31 Identities=6% Similarity=0.223 Sum_probs=24.3
Q ss_pred CCCceeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 54 GSPTGLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 54 GSptg~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
|.-+=.|+.-.+|.+|-++|++..+|+++++
T Consensus 27 g~~~l~v~~~~TV~~LK~~I~~~~gip~~~q 57 (106)
T 1wx7_A 27 DKEDFSVTDTCTIQQLKEEISQRFKAHPDQL 57 (106)
T ss_dssp CEEEEEEETTCCHHHHHHHHHHHHTCCTTTE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHHCcChhhE
Confidence 3334456777899999999999999987653
No 23
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=63.41 E-value=5.5 Score=22.96 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=22.5
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-++|.+|-++|++.+++|+++.
T Consensus 19 ~v~~~~tV~~lK~~i~~~~~ip~~~q 44 (85)
T 3n3k_B 19 EVEPSDTIENVKAKIQDKEGIPPDQQ 44 (85)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCCcHHHHHHHHHHHHCCCHHHE
Confidence 56677899999999999999999764
No 24
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=63.39 E-value=4.4 Score=22.55 Aligned_cols=20 Identities=5% Similarity=0.072 Sum_probs=16.5
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++..
T Consensus 51 ~~l~~ia~~l~~~~~~l~~~ 70 (78)
T 3b7h_A 51 TTIRKVCGTLGISVHDFFDF 70 (78)
T ss_dssp HHHHHHHHHHTCCHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHhcC
Confidence 45678999999999999853
No 25
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=62.89 E-value=3.7 Score=23.64 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=17.4
Q ss_pred HHHHHhhhhhcCChhhHhhhc
Q psy16018 68 ELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~~ 88 (89)
+...+||++|+++++++..++
T Consensus 55 ~~~~~ia~~l~v~~~~l~~~l 75 (80)
T 3kz3_A 55 YNAALLAKILKVSVEEFSPSI 75 (80)
T ss_dssp HHHHHHHHHHTSCGGGTCHHH
T ss_pred HHHHHHHHHhCCCHHHHhHHH
Confidence 567899999999999887653
No 26
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=61.60 E-value=5.7 Score=22.05 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.9
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++..
T Consensus 53 ~~l~~la~~l~~~~~~l~~~ 72 (77)
T 2b5a_A 53 INIHKICAALDIPASTFFRK 72 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHhcc
Confidence 45678999999999999864
No 27
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=61.45 E-value=6.3 Score=22.27 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.0
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++..++|++++
T Consensus 19 ~v~~~~tV~~LK~~i~~~~~i~~~~q 44 (77)
T 2bwf_A 19 NVAPESTVLQFKEAINKANGIPVANQ 44 (77)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCCcHHHHHHHHHHHhCCCHHHE
Confidence 45666899999999999999998763
No 28
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=61.33 E-value=5.4 Score=23.01 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=22.3
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-++|.+|.++|++..++|++++
T Consensus 19 ~v~~~~tv~~lk~~i~~~~gi~~~~q 44 (79)
T 2uyz_B 19 KVKMTTHLKKLKESYCQRQGVPMNSL 44 (79)
T ss_dssp EEETTSCTHHHHHHHHHHHTCCGGGE
T ss_pred EECCCChHHHHHHHHHHHHCCCcccE
Confidence 45667899999999999999998764
No 29
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=61.29 E-value=8.1 Score=23.40 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=25.0
Q ss_pred cCccchHHHHHHhhhhhcCChhhHhhhc
Q psy16018 61 SGFSNVRELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~~eIl~~~ 88 (89)
-||+|..-++...-+.||++|.+.-+.+
T Consensus 79 ~Gf~~~s~F~r~Fk~~~G~tP~~yr~~~ 106 (107)
T 2k9s_A 79 VGFDDQLYFSRVFKKCTGASPSEFRAGC 106 (107)
T ss_dssp TTCCCHHHHHHHHHHHHSSCHHHHHHTC
T ss_pred hCCCCHHHHHHHHHHHHCcCHHHHHhhc
Confidence 4999999999999999999999987654
No 30
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.63 E-value=5.5 Score=22.74 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=22.8
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
=.|+.-.+|.+|-++|++..++|++++
T Consensus 22 ~~v~~~~tV~~LK~~i~~~~~i~~~~q 48 (81)
T 2dzi_A 22 LQVPEDELVSTLKQLVSEKLNVPVRQQ 48 (81)
T ss_dssp EEECSSCBHHHHHHHHHHHTCCCTTTC
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHE
Confidence 456777899999999999999998753
No 31
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=60.57 E-value=4.8 Score=26.44 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=17.2
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+.-++||++|+++++..+.+
T Consensus 60 ~~l~~iA~~f~V~~~yl~~~ 79 (123)
T 3qwg_A 60 ATMAALANFFRIKAAYFTDD 79 (123)
T ss_dssp HHHHHHHHHTTSCTHHHHCH
T ss_pred HHHHHHHHHhCCCHHHHcCC
Confidence 67789999999999988754
No 32
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=60.25 E-value=5 Score=21.43 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.3
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|++++++++.
T Consensus 44 ~~l~~i~~~l~~~~~~l~~ 62 (66)
T 2xi8_A 44 QLALKIAYYLNTPLEDIFQ 62 (66)
T ss_dssp HHHHHHHHHTTSCHHHHEE
T ss_pred HHHHHHHHHHCcCHHHHhC
Confidence 4567899999999999875
No 33
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=59.78 E-value=7.1 Score=22.37 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=22.1
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++.+++|+++.
T Consensus 19 ~v~~~~tV~~lK~~i~~~~~i~~~~q 44 (85)
T 3mtn_B 19 EVEPSDTIENVKAKIQDKEGIPPDQQ 44 (85)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred EECCCCCHHHHHHHHHHHHCcChHHE
Confidence 45667899999999999999998764
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=59.54 E-value=7 Score=23.52 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=21.8
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++..++|++++
T Consensus 25 ~v~~~~TV~~LK~~I~~~~gip~~~q 50 (88)
T 1sif_A 25 EMEPSDTIENLKAKIQDKEGIPPDQQ 50 (88)
T ss_dssp ECCTTSBHHHHHHHHHHHHCCCGGGC
T ss_pred EECCCChHHHHHHHHHHHHCcChhhE
Confidence 35566899999999999999998763
No 35
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=59.30 E-value=6.9 Score=23.36 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=22.4
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++.+++|++++
T Consensus 17 ~v~~~~TV~~LK~~i~~~~gip~~~q 42 (96)
T 3k9o_B 17 EVEPSDTIENVKAKIQDKEGIPPDQQ 42 (96)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCCCHHHHHHHHHhhhCCChhHE
Confidence 46677899999999999999998763
No 36
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=59.06 E-value=23 Score=20.36 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=28.4
Q ss_pred ceeeeeecccCCC-ceeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 44 KLIFHCQLAHGSP-TGLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 44 ~LvFh~QLAHGSp-tg~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.+........|.. +=.|+.-.+|.+|-++|++..++|+++.
T Consensus 12 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q 53 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQ 53 (88)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred cEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHE
Confidence 3434444333433 3357788899999999999999998763
No 37
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=58.90 E-value=6.9 Score=21.53 Aligned_cols=20 Identities=5% Similarity=0.116 Sum_probs=16.6
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++..
T Consensus 48 ~~l~~ia~~l~~~~~~l~~~ 67 (76)
T 1adr_A 48 ENLLALSKALQCSPDYLLKG 67 (76)
T ss_dssp HHHHHHHHHTTSCHHHHHHT
T ss_pred HHHHHHHHHHCcCHHHHhcC
Confidence 45678999999999999853
No 38
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=58.69 E-value=6.2 Score=24.20 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=18.9
Q ss_pred ccCccchHHHHHHhhhhhcCChh
Q psy16018 60 ISGFSNVRELYQKIAECYEFPAE 82 (89)
Q Consensus 60 I~gF~nvkELY~kIae~f~i~~~ 82 (89)
++.=+++.+|+++|++.++++.+
T Consensus 20 v~~~~t~~~L~~~I~~~~~i~~~ 42 (80)
T 2pjh_A 20 ATKRETAATFLKKVAKEFGFQNN 42 (80)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCTT
T ss_pred cCCcChHHHHHHHHHHHcCCCCC
Confidence 34557899999999999998754
No 39
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=57.46 E-value=7.2 Score=23.45 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=14.1
Q ss_pred HhhhhhcCChhhHhhh
Q psy16018 72 KIAECYEFPAEEVSED 87 (89)
Q Consensus 72 kIae~f~i~~~eIl~~ 87 (89)
.||+++++++++|+.+
T Consensus 53 ~IA~aLgv~~~~L~~~ 68 (74)
T 1neq_A 53 IIANALETKPEVIWPS 68 (74)
T ss_dssp HHHHHTTSCHHHHCTT
T ss_pred HHHHHHCcCHHHHhHH
Confidence 4999999999999764
No 40
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=57.46 E-value=6.7 Score=24.18 Aligned_cols=20 Identities=15% Similarity=-0.012 Sum_probs=16.7
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++..
T Consensus 71 ~~l~~ia~~l~v~~~~l~~~ 90 (99)
T 3g5g_A 71 KSLELIMKGLEVSDVVFFEM 90 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhcc
Confidence 45678999999999999863
No 41
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=57.25 E-value=5.8 Score=26.28 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=17.0
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+.-.+||++|+++++..+.+
T Consensus 62 ~~l~~iA~~f~V~~~yl~~~ 81 (135)
T 3r1f_A 62 ATMAALANFFRIKAAYFTDD 81 (135)
T ss_dssp HHHHHHHHHHTSCTHHHHCH
T ss_pred HHHHHHHHHhCCCHHHHcCC
Confidence 57789999999999988753
No 42
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=56.96 E-value=9.5 Score=23.11 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=25.1
Q ss_pred cCccchHHHHHHhhhhhcCChhhHhhhcC
Q psy16018 61 SGFSNVRELYQKIAECYEFPAEEVSEDFR 89 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~~eIl~~~~ 89 (89)
-||+|..-++...-+.||++|.|.-+.+|
T Consensus 80 ~Gf~~~s~F~r~Fk~~~G~tP~~yR~~~~ 108 (108)
T 3oou_A 80 SGYTDMAYFYRQFKKHTGETPNRYRKIHQ 108 (108)
T ss_dssp TTCCCHHHHHHHHHHHHSSCHHHHHHHHC
T ss_pred cCCCChHHHHHHHHHHhCcCHHHHHHHhC
Confidence 58999999999999999999999866543
No 43
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=56.22 E-value=8.3 Score=23.40 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=22.1
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-++|.+|-++|++..++|++++
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gi~~~~q 41 (98)
T 1yx5_B 16 EVEPSDTIENVKAKIQDKEGIPPDQQ 41 (98)
T ss_dssp ECCTTCBHHHHHHHHHHHTCCCGGGE
T ss_pred EECCCCcHHHHHHHHHHHHCcChhhE
Confidence 45667899999999999999998763
No 44
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=55.96 E-value=7 Score=22.82 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=23.0
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
=.|+.-.+|.+|-++|++..++|+++.
T Consensus 22 ~~v~~~~tV~~lK~~i~~~~gi~~~~q 48 (87)
T 1wh3_A 22 YAINPNSFILGLKQQIEDQQGLPKKQQ 48 (87)
T ss_dssp EEECSSSBHHHHHHHHHHHTCCCTTTE
T ss_pred EEeCCCChHHHHHHHHHHHhCCChHHE
Confidence 456777899999999999999998763
No 45
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=55.59 E-value=11 Score=21.72 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=22.5
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|=++|++..++|+++.
T Consensus 20 ~v~~~~tV~~lK~~i~~~~gip~~~q 45 (79)
T 3phx_B 20 EVRLTQTVAHLKQQVSGLEGVQDDLF 45 (79)
T ss_dssp EECTTSBHHHHHHHHHHHHTCCGGGE
T ss_pred EECCcChHHHHHHHHHhhcCCCHHHE
Confidence 46677899999999999999998763
No 46
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=54.16 E-value=14 Score=22.30 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.6
Q ss_pred eeccCccchHHHHHHhhhhhcCChhh
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
=.|+.-.+|.+|-++|++..++|+++
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~ 50 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSK 50 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGG
T ss_pred EEECCCChHHHHHHHHHHHHCcChHH
Confidence 35677789999999999999999886
No 47
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.37 E-value=26 Score=21.43 Aligned_cols=41 Identities=17% Similarity=0.001 Sum_probs=27.9
Q ss_pred CceeeeeecccCCCceeccCccchHHHHHHhhhhhcCChhh
Q psy16018 43 PKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 43 p~LvFh~QLAHGSptg~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
..+.+...+.-..-+=.|+.-.+|.+|-++|++..+||+++
T Consensus 16 ~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~ 56 (95)
T 1v86_A 16 ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAM 56 (95)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTT
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 34545554321122345677789999999999999999875
No 48
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=53.34 E-value=7.1 Score=21.09 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=15.3
Q ss_pred HHHhhhhhcCChhhHhh
Q psy16018 70 YQKIAECYEFPAEEVSE 86 (89)
Q Consensus 70 Y~kIae~f~i~~~eIl~ 86 (89)
..+||++|++++++++.
T Consensus 45 l~~la~~l~~~~~~l~~ 61 (69)
T 1r69_A 45 LPELASALGVSVDWLLN 61 (69)
T ss_dssp HHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHhC
Confidence 78899999999999885
No 49
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=53.30 E-value=11 Score=21.46 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.1
Q ss_pred ccCccchHHHHHHhhhhhcCChhhH
Q psy16018 60 ISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 60 I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
|+.-.+|.+|-++|++..++|+++.
T Consensus 21 v~~~~tv~~lK~~i~~~~gip~~~q 45 (78)
T 2faz_A 21 LSRLTKVEELRRKIQELFHVEPGLQ 45 (78)
T ss_dssp ECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhE
Confidence 6777899999999999999998763
No 50
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=52.89 E-value=12 Score=23.12 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=24.8
Q ss_pred cCccchHHHHHHhhhhhcCChhhHhhhc
Q psy16018 61 SGFSNVRELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~~eIl~~~ 88 (89)
-||+|..-++...-+.||++|.+..+.+
T Consensus 81 ~Gf~~~s~F~r~Fk~~~G~tP~~yr~~~ 108 (120)
T 3mkl_A 81 CGYHSVSYFIYVFRNYYGMTPTEYQERS 108 (120)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHHHHHC
T ss_pred HCCCCHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4899999999999999999999987654
No 51
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=51.99 E-value=7.5 Score=24.56 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=18.9
Q ss_pred CccchHHHHHHhhhhhcCChhh
Q psy16018 62 GFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 62 gF~nvkELY~kIae~f~i~~~e 83 (89)
.=.+|.+|.++|++.++||+++
T Consensus 26 ~~~Tv~~LK~kI~~~~gip~~~ 47 (107)
T 1wf9_A 26 PHITVSQLKTLIQDQLQIPIHN 47 (107)
T ss_dssp TTSBHHHHHHHHHHHSCCCTTT
T ss_pred CCCcHHHHHHHHHHHhCcCccc
Confidence 4479999999999999998765
No 52
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=51.92 E-value=8.1 Score=21.74 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=18.8
Q ss_pred cchHHHHHHhhhhhcCChhhHhhh
Q psy16018 64 SNVRELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 64 ~nvkELY~kIae~f~i~~~eIl~~ 87 (89)
..+.++-..+|+.|++++++++..
T Consensus 53 ~~l~~~~~~l~~~~~v~~~~l~~~ 76 (84)
T 2ef8_A 53 LELFELLEVVASRLGLPMDILLKD 76 (84)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHccccCCCHHHHHcc
Confidence 344567778899999999999863
No 53
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=51.54 E-value=9.5 Score=23.29 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=16.7
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++.+
T Consensus 71 ~~l~~la~~l~v~~~~l~~~ 90 (117)
T 3f52_A 71 ELLASVCHALGASVADVLIE 90 (117)
T ss_dssp HHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHhc
Confidence 45678999999999998864
No 54
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=51.51 E-value=14 Score=22.47 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=24.5
Q ss_pred cCccchHHHHHHhhhhhcCChhhHhhhc
Q psy16018 61 SGFSNVRELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~~eIl~~~ 88 (89)
-||+|..-++...-+.||++|.+.-+..
T Consensus 82 ~Gf~~~s~F~r~Fk~~~G~tP~~yR~~~ 109 (113)
T 3oio_A 82 CGFSSGPHFSSTYRNHFNITPREERAQR 109 (113)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHHHHTT
T ss_pred HCCCCHHHHHHHHHHHHCcCHHHHHHhh
Confidence 4999999999999999999999976543
No 55
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=51.28 E-value=8.8 Score=22.71 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=17.3
Q ss_pred HHHHHHhhhhhcCChhhHhhh
Q psy16018 67 RELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 67 kELY~kIae~f~i~~~eIl~~ 87 (89)
.+...+||++|++++++++..
T Consensus 51 ~~~l~~ia~~l~v~~~~l~~~ 71 (94)
T 2kpj_A 51 MGKVQALADYFNINKSDLIED 71 (94)
T ss_dssp HHHHHHHHHHHTCCTHHHHSC
T ss_pred HHHHHHHHHHHCcCHHHHhcC
Confidence 345689999999999999864
No 56
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=50.84 E-value=8.3 Score=20.91 Aligned_cols=18 Identities=11% Similarity=-0.064 Sum_probs=15.7
Q ss_pred HHHhhhhhcCChhhHhhh
Q psy16018 70 YQKIAECYEFPAEEVSED 87 (89)
Q Consensus 70 Y~kIae~f~i~~~eIl~~ 87 (89)
..+||++|++++++++..
T Consensus 47 l~~i~~~l~~~~~~l~~~ 64 (71)
T 1zug_A 47 LFEIAMALNCDPVWLQYG 64 (71)
T ss_dssp HHHHHHHTTSCHHHHHHS
T ss_pred HHHHHHHHCCCHHHHhCC
Confidence 788999999999999853
No 57
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=50.74 E-value=12 Score=22.88 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.6
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++..++|+++.
T Consensus 33 ~v~~~~TV~~LK~~I~~~~gip~~~q 58 (93)
T 2l7r_A 33 EVTGQETVAQIKAHVASLEGIAPEDQ 58 (93)
T ss_dssp ECCSSCBHHHHHHHHHHHHTCCGGGC
T ss_pred EeCCCCcHHHHHHHHHHHhCcChhHE
Confidence 56777899999999999999998764
No 58
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=50.46 E-value=8.5 Score=22.28 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=16.7
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++.+
T Consensus 60 ~~l~~ia~~l~v~~~~l~~~ 79 (92)
T 1lmb_3 60 YNAALLAKILKVSVEEFSPS 79 (92)
T ss_dssp HHHHHHHHHHTSCGGGTCHH
T ss_pred HHHHHHHHHHCCCHHHHhhh
Confidence 45678999999999998764
No 59
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=50.20 E-value=9.3 Score=23.55 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=16.8
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++..
T Consensus 64 ~~l~~ia~~l~v~~~~l~~~ 83 (114)
T 3vk0_A 64 SNIEKMAAALGVAAYQLLLP 83 (114)
T ss_dssp HHHHHHHHHHTSCHHHHTSC
T ss_pred HHHHHHHHHhCCCHHHHhCC
Confidence 56679999999999998753
No 60
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.77 E-value=12 Score=23.17 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=22.5
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++..+|++++.
T Consensus 27 ~v~~~~TV~~LK~~I~~~~gip~~~q 52 (102)
T 1v5o_A 27 QVNPDFELSNFRVLCELESGVPAEEA 52 (102)
T ss_dssp EECTTCBHHHHHHHHHHHTCCCGGGB
T ss_pred EcCCCCCHHHHHHHHHHHHCcChHHe
Confidence 36777899999999999999998763
No 61
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=49.72 E-value=8.5 Score=21.98 Aligned_cols=20 Identities=0% Similarity=0.066 Sum_probs=14.0
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
++++++.+++++++++++|.
T Consensus 23 ~~~lt~~l~~~lg~p~~~v~ 42 (67)
T 3m21_A 23 IEGVSDLMVKVLNKNKASIV 42 (67)
T ss_dssp HHHHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHHHHCcCcccEE
Confidence 34555556688899998874
No 62
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=49.48 E-value=9.9 Score=20.69 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhcCChhhHh
Q psy16018 67 RELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 67 kELY~kIae~f~i~~~eIl 85 (89)
+++++.+.+.+++|+++|.
T Consensus 21 ~~i~~~l~~~lg~p~~~v~ 39 (62)
T 1otf_A 21 RQVSEAMANSLDAPLERVR 39 (62)
T ss_dssp HHHHHHHHHHHTCCGGGCE
T ss_pred HHHHHHHHHHhCcCcccEE
Confidence 3445555588999998864
No 63
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=49.21 E-value=11 Score=23.23 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=23.4
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
=.|+.-++|.+|.++|++..+||++++
T Consensus 36 l~v~~~~tv~~lK~~i~~~~gip~~~q 62 (97)
T 1wyw_B 36 FKVKMTTHLKKLKESYCQRQGVPMNSL 62 (97)
T ss_dssp EEEETTSCTHHHHHHHHHHHTCCGGGE
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhE
Confidence 457778999999999999999998864
No 64
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=48.68 E-value=14 Score=21.83 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.6
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++.+++++++.
T Consensus 21 ~v~~~~tV~~lK~~i~~~~gip~~~q 46 (90)
T 4dwf_A 21 IVGAQMNVKEFKEHIAASVSIPSEKQ 46 (90)
T ss_dssp EEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred EECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 56778899999999999999998763
No 65
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=48.50 E-value=53 Score=21.30 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=23.0
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.=.+|.+|.++|++..+||++++
T Consensus 44 ev~p~dTV~~lK~~Ia~k~Gip~~qQ 69 (100)
T 1uh6_A 44 KCNTDDTIGDLKKLIAAQTGTRWNKI 69 (100)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGC
T ss_pred EeCCCCcHHHHHHHHHHHhCCCHHHE
Confidence 46677899999999999999999885
No 66
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=48.43 E-value=13 Score=22.20 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.1
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|=++|++.+++|+++.
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gip~~~q 41 (88)
T 4fbj_B 16 DIEPTDKVERIKERVEEKEGIPPQQQ 41 (88)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred EECCCCCHHHHHHHHHHHHCcChhHE
Confidence 45667899999999999999998763
No 67
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=48.41 E-value=8.8 Score=22.29 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhcCChhhHh
Q psy16018 67 RELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 67 kELY~kIae~f~i~~~eIl 85 (89)
+++++.+++++++|+++|+
T Consensus 22 ~~it~~l~~~lg~p~~~v~ 40 (72)
T 3mb2_A 22 RALSAAAAAAFDVPLAEVR 40 (72)
T ss_dssp HHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHHhCCCcccEE
Confidence 3444555588899998875
No 68
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=48.12 E-value=9.7 Score=20.45 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=15.5
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
.+++++.+++++++|++.|.
T Consensus 23 ~~~l~~~l~~~lg~p~~~v~ 42 (63)
T 2x4k_A 23 VSEVTDAVEKTTGANRQAIH 42 (63)
T ss_dssp HHHHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHHHhCcCcccEE
Confidence 45677777799999998765
No 69
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=47.96 E-value=11 Score=22.45 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=15.7
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|++++++++.
T Consensus 48 ~~l~~la~~l~v~~~~l~~ 66 (98)
T 3lfp_A 48 EMANRLAKVLKIPVSYLYT 66 (98)
T ss_dssp HHHHHHHHHHTSCGGGGGC
T ss_pred HHHHHHHHHHCcCHHHHhC
Confidence 3556899999999999875
No 70
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=46.96 E-value=11 Score=22.05 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.2
Q ss_pred ccCccchHHHHHHhhhhhcCChhhH
Q psy16018 60 ISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 60 I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
|+.-.+|.+|-++|++..++|+++.
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~q 50 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQ 50 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTE
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhE
Confidence 7788999999999999999998763
No 71
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=46.80 E-value=30 Score=21.43 Aligned_cols=31 Identities=6% Similarity=0.223 Sum_probs=24.6
Q ss_pred CCCceeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 54 GSPTGLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 54 GSptg~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
|.-+=.|+.-.+|.+|-++|++..++|++++
T Consensus 32 g~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q 62 (100)
T 1yqb_A 32 DKEDFSVTDTCTIQQLKEEISQRFKAHPDQL 62 (100)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHHCcChhhE
Confidence 3334456777899999999999999998763
No 72
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=46.28 E-value=16 Score=21.46 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.2
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
=.|+.-.+|.+|=++|++.+++|+++.
T Consensus 32 ~~v~~~~tV~~lK~~i~~~~gip~~~q 58 (88)
T 4eew_A 32 FIVGAQMNVKEFKEHIAASVSIPSEKQ 58 (88)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 357788899999999999999998763
No 73
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=46.22 E-value=11 Score=22.54 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=22.2
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++..+||+++.
T Consensus 20 ~v~~~~TV~~LK~~I~~~~gip~~~q 45 (88)
T 2hj8_A 20 EVRLTQTVAHLKQQVSGLEGVQDDLF 45 (88)
T ss_dssp EEESSSBHHHHHHHHHHHTCSCTTTE
T ss_pred EECCCCcHHHHHHHHHHHhCCChhHE
Confidence 45667899999999999999998763
No 74
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.77 E-value=15 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.027 Sum_probs=23.3
Q ss_pred ceeccCccchHHHHHHhhhhhcCChhh
Q psy16018 57 TGLISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 57 tg~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
+-+|+.-.+|.+|-++|++..+||+++
T Consensus 22 ~~~v~~~~TV~~lK~ki~~~~gip~~~ 48 (95)
T 1v6e_A 22 EKRYSRSLTIAEFKCKLELVVGSPASC 48 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHTCSCTTT
T ss_pred EEEcCccCHHHHHHHHHHHHHCCCHHH
Confidence 346777789999999999999999875
No 75
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=45.66 E-value=14 Score=22.91 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=22.8
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
=.|+.-.+|.+|-++|++..++|++++
T Consensus 39 l~v~~~~TV~~LK~~I~~~~gip~~~q 65 (101)
T 2klc_A 39 FAVPENSSVQQFKEEISKRFKSHTDQL 65 (101)
T ss_dssp EEECSCCCHHHHHHHHHHHHTCCGGGE
T ss_pred EEECCCCCHHHHHHHHHHHHCcChhhE
Confidence 356667899999999999999998763
No 76
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.50 E-value=12 Score=22.56 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=22.9
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
=.|+.-.+|.+|-++|++..+|+++++
T Consensus 31 ~~v~~~~TV~~LK~~I~~~~gip~~~q 57 (96)
T 1wx8_A 31 FFLAENSNVRRFKKQISKYLHCNADRL 57 (96)
T ss_dssp EEEETTCCHHHHHHHHHHHTCSCTTTB
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 456777899999999999999998753
No 77
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=45.41 E-value=13 Score=22.52 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=16.0
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|++++++++.
T Consensus 52 ~~l~~la~~l~v~~~~l~~ 70 (114)
T 3op9_A 52 EKLIRLATYFHLSIDELVG 70 (114)
T ss_dssp HHHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHhc
Confidence 4556899999999999885
No 78
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=45.20 E-value=13 Score=24.44 Aligned_cols=34 Identities=12% Similarity=0.316 Sum_probs=28.7
Q ss_pred CCCceeeeeecccCCCceeccCccchHHHHHHhhhhh
Q psy16018 41 SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECY 77 (89)
Q Consensus 41 ~~p~LvFh~QLAHGSptg~I~gF~nvkELY~kIae~f 77 (89)
..|.|||-.+ |-..+||.||-+-.++.+.+....
T Consensus 76 g~PT~i~f~~---G~ev~Ri~G~~~~~~f~~~L~~~l 109 (116)
T 3dml_A 76 FTPTFVLMAG---DVESGRLEGYPGEDFFWPMLARLI 109 (116)
T ss_dssp SSSEEEEEET---TEEEEEEECCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEC---CEEEeeecCCCCHHHHHHHHHHHH
Confidence 3588999886 999999999999999988876543
No 79
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=44.74 E-value=14 Score=22.27 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.3
Q ss_pred eccCccchHHHHHHhhhhhcCChhh
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
.|+.-.+|.+|-++|++..++|+++
T Consensus 27 ~v~~~~TV~~LK~~I~~~~gip~~~ 51 (85)
T 2kd0_A 27 SVSPDCTVKDLKSQLQPITNVLPRG 51 (85)
T ss_dssp EECTTSBHHHHHHHHHHHHCCCTTT
T ss_pred EECCCCcHHHHHHHHHHHHCcChHH
Confidence 4556689999999999999999875
No 80
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=44.43 E-value=15 Score=23.38 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=22.3
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++..+||++++
T Consensus 25 ~v~~~~TV~~LK~~I~~~~gip~~~q 50 (114)
T 2kdi_A 25 EVESSDTIDNVKSKIQDKEGIPPDQQ 50 (114)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EECCCCcHHHHHHHHHHHHCcChHHE
Confidence 45667899999999999999998764
No 81
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=44.38 E-value=13 Score=22.92 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=24.3
Q ss_pred CCceeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 55 SPTGLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 55 Sptg~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.-+=.|+.-.+|.+|-++|++..++|+++.
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q 55 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRM 55 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHE
Confidence 334456777899999999999999998763
No 82
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=44.28 E-value=20 Score=22.46 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=24.0
Q ss_pred cCccchHHHHHHhhhhhcCChhhHhhh
Q psy16018 61 SGFSNVRELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~~eIl~~ 87 (89)
-||+|..-++...-+.||++|.+.-+.
T Consensus 86 ~Gf~~~s~F~r~Fk~~~G~tP~~yR~~ 112 (129)
T 1bl0_A 86 YGFESQQTLTRTFKNYFDVPPHKYRMT 112 (129)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHHHTC
T ss_pred HCCCCHHHHHHHHHHHHCcCHHHHHHH
Confidence 599999999999999999999987654
No 83
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=44.16 E-value=17 Score=22.18 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=23.2
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
=.|+.-.+|.+|=++|++.+++|+++.
T Consensus 37 l~v~~~~TV~~LK~~I~~~~gip~~~q 63 (98)
T 4hcn_B 37 LEVESSDTIDNVKSKIQDKEGIPPDQQ 63 (98)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred EEECCCCcHHHHHHHHHHHhCCChhHE
Confidence 357788899999999999999998764
No 84
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=43.87 E-value=18 Score=21.58 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=21.9
Q ss_pred cCccchHHHHHHhhhhhcCChhhH
Q psy16018 61 SGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~~eI 84 (89)
-||+|..-++...-+.||++|.+.
T Consensus 78 ~Gf~~~s~F~r~Fk~~~G~tP~~y 101 (103)
T 3lsg_A 78 VGFEDVNYFITKFKKYYQITPKQY 101 (103)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHH
T ss_pred hCCCCHHHHHHHHHHHHCcCHHHH
Confidence 489999999999999999999885
No 85
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=43.71 E-value=13 Score=19.39 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=14.4
Q ss_pred HHHhhhhhcCChhhHhh
Q psy16018 70 YQKIAECYEFPAEEVSE 86 (89)
Q Consensus 70 Y~kIae~f~i~~~eIl~ 86 (89)
...||+.|+++..+|++
T Consensus 13 l~~Ia~~~~~~~~~l~~ 29 (48)
T 1e0g_A 13 LSSIAKRHGVNIKDVMR 29 (48)
T ss_dssp HHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 45799999999999876
No 86
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=43.59 E-value=13 Score=20.90 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=13.3
Q ss_pred HHHHHHhhhhhcCChhhHh
Q psy16018 67 RELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 67 kELY~kIae~f~i~~~eIl 85 (89)
+++++.+.+++++|+++|.
T Consensus 21 ~~it~~~~~~lg~p~~~v~ 39 (65)
T 3ry0_A 21 EALTAAAHETLGTPVEAVR 39 (65)
T ss_dssp HHHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHHhCcCcccEE
Confidence 3445555588999998764
No 87
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=43.56 E-value=12 Score=20.51 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhcCChhhHh
Q psy16018 67 RELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 67 kELY~kIae~f~i~~~eIl 85 (89)
++|.+.+++..++|++.|+
T Consensus 22 ~~lt~~l~~~lg~~~~~v~ 40 (64)
T 3abf_A 22 RRLTEMASRLLGEPYEEVR 40 (64)
T ss_dssp HHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHhCCCcccEE
Confidence 4455555678889988775
No 88
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=43.14 E-value=15 Score=21.81 Aligned_cols=19 Identities=5% Similarity=0.331 Sum_probs=16.2
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|++++++++.
T Consensus 45 ~~l~~ia~~l~v~~~~l~~ 63 (111)
T 1b0n_A 45 QFLEKVSAVLDVSVHTLLD 63 (111)
T ss_dssp HHHHHHHHHHTCCHHHHHC
T ss_pred HHHHHHHHHHCcCHHHHhc
Confidence 4567899999999999885
No 89
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.04 E-value=15 Score=22.84 Aligned_cols=43 Identities=7% Similarity=0.059 Sum_probs=29.4
Q ss_pred CCceeeeeecccCC-CceeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 42 KPKLIFHCQLAHGS-PTGLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 42 ~p~LvFh~QLAHGS-ptg~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
...+........|. -+=.|+.-.+|.+|-++|++..+|++++.
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q 64 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQ 64 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccE
Confidence 33444444433342 23467788899999999999999987753
No 90
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=41.34 E-value=14 Score=20.02 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=11.9
Q ss_pred HHHHHhhhhhcCChhhHh
Q psy16018 68 ELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl 85 (89)
++.+.+.+.+++++++|.
T Consensus 22 ~i~~~l~~~lg~~~~~v~ 39 (61)
T 2opa_A 22 KVTEAVKETTGASEEKIV 39 (61)
T ss_dssp HHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHhCcCcCeEE
Confidence 334444477899998764
No 91
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=41.16 E-value=13 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=16.0
Q ss_pred HHHHHhhhhhc--CChhhHhhh
Q psy16018 68 ELYQKIAECYE--FPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~--i~~~eIl~~ 87 (89)
+.-.+||++|+ ++++++..|
T Consensus 40 ~~l~~ia~~l~~~v~~~~l~p~ 61 (79)
T 3bd1_A 40 ERCIDIERVTNGAVICRELRPD 61 (79)
T ss_dssp GGHHHHHHHTTTSSCHHHHCTT
T ss_pred HHHHHHHHHHCCCCcHHHhCcc
Confidence 45678999999 999998544
No 92
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=41.09 E-value=22 Score=22.26 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=22.4
Q ss_pred eeccCccchHHHHHHhhhhhcCChhh
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
=.|+.-.+|.+|-++|++.+++|+++
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~ 40 (152)
T 3b08_A 15 LEVEPSDTIENVKAKIQDKEGIPPDQ 40 (152)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred EEECCCCCHHHHHHHHHHHHCcChHH
Confidence 35667789999999999999999876
No 93
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=47.12 E-value=5.7 Score=22.57 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.0
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|-++|++..++|++++
T Consensus 16 ~v~~~~tV~~lK~~i~~~~gi~~~~q 41 (76)
T 3b1l_X 16 EVDSDTSILQLKEVVAKQQGVPADQL 41 (76)
Confidence 45566789999999999999988764
No 94
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=40.70 E-value=14 Score=26.27 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.9
Q ss_pred ceeccCccchHHHHHHhhhhhcCChh
Q psy16018 57 TGLISGFSNVRELYQKIAECYEFPAE 82 (89)
Q Consensus 57 tg~I~gF~nvkELY~kIae~f~i~~~ 82 (89)
+..++-..++++|++.+.+.|+|+++
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~ 168 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDE 168 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTT
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCC
Confidence 47789999999999999999999986
No 95
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=39.34 E-value=16 Score=22.56 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=16.1
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|++++++++.
T Consensus 55 ~~l~~ia~~l~v~~~~l~~ 73 (126)
T 3ivp_A 55 QVLYDLVSLLNVSVDEFFL 73 (126)
T ss_dssp HHHHHHHHHHTCCSHHHHS
T ss_pred HHHHHHHHHHCcCHHHHhC
Confidence 4567899999999999875
No 96
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=39.20 E-value=16 Score=22.83 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=23.0
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
=.|+.-.+|.+|-++|++.+++|+++.
T Consensus 42 l~v~~~~TV~~LK~~I~~~~gip~~~Q 68 (101)
T 3m63_B 42 VNVAPESTVLQFKEAINKANGIPVANQ 68 (101)
T ss_dssp BCCCTTSBHHHHHHHHHHHHSCCSTTC
T ss_pred EEeCCCCCHHHHHHHHHHHHCcChHHE
Confidence 356778899999999999999998753
No 97
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=38.84 E-value=20 Score=22.46 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.2
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+.-.+|.+|=++|++.++|+++++
T Consensus 17 ~v~~~~TV~~LK~~I~~~~gip~~~Q 42 (106)
T 3m62_B 17 DLEPSNTILETKTKLAQSISCEESQI 42 (106)
T ss_dssp CCCTTSBHHHHHHHHHHTTTSCGGGC
T ss_pred EECCCCcHHHHHHHHHHHHCCChhhE
Confidence 35677899999999999999998764
No 98
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=38.78 E-value=20 Score=22.52 Aligned_cols=21 Identities=5% Similarity=0.393 Sum_probs=18.3
Q ss_pred cCccchHHHHHHhhhhhcCCh
Q psy16018 61 SGFSNVRELYQKIAECYEFPA 81 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~ 81 (89)
..+++..++|..++++|++|.
T Consensus 9 ~~i~~~~~f~~~~~~~~~~p~ 29 (90)
T 2cx6_A 9 DEIESQEDFYRDFSQTFGLAK 29 (90)
T ss_dssp TSCCSHHHHHHHHHHHTTCCT
T ss_pred CCCCCHHHHHHHHHHHhCCch
Confidence 457889999999999999874
No 99
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=38.50 E-value=25 Score=22.39 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=25.8
Q ss_pred eccCccchHHHHHHhhhhhcCChhhHhhh
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eIl~~ 87 (89)
.|+|=.+|.|+-+.+++.|+.++.+|-+|
T Consensus 51 l~DG~rtv~eIv~~L~~~y~~~~e~i~~D 79 (95)
T 3g2b_A 51 RYDGTQSLAQIAQTLAAEFDADASEIETD 79 (95)
T ss_dssp HCCSSSCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHcCCcHHHHHHH
Confidence 57899999999999999999998777665
No 100
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=38.36 E-value=17 Score=21.52 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=12.9
Q ss_pred HHHHHHhhhhhcCChhhHh
Q psy16018 67 RELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 67 kELY~kIae~f~i~~~eIl 85 (89)
+++++.+.+++++|+++|.
T Consensus 22 ~~it~~l~~~lg~p~~~v~ 40 (76)
T 3ej9_A 22 AGLLRVISEATGEPRENIF 40 (76)
T ss_dssp HHHHHHHHHHHCCCGGGCE
T ss_pred HHHHHHHHHHHCcCcccEE
Confidence 3444445588899998874
No 101
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=37.42 E-value=28 Score=26.45 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=30.8
Q ss_pred ccCCCceeccCccchHHHHHHhhhhhcCChhhHhhh
Q psy16018 52 AHGSPTGLISGFSNVRELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 52 AHGSptg~I~gF~nvkELY~kIae~f~i~~~eIl~~ 87 (89)
..|...|.-+.=.+|.+.+++||+.-+++++||.+.
T Consensus 276 ~~~~~~g~rNeP~~v~~v~~~iA~l~g~~~eeva~~ 311 (325)
T 3ipw_A 276 QRNKYVQRRNEPSNIIDIAIIMSSIKHISLFEFVNK 311 (325)
T ss_dssp CTTSCBTTCCCGGGHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccccccCCcCcHHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 456667778888899999999999999999998763
No 102
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=36.10 E-value=20 Score=23.51 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=17.4
Q ss_pred HHHHHhhhhhcCChhhHhhhc
Q psy16018 68 ELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~~ 88 (89)
+.-.+||++|+++++++++.+
T Consensus 111 ~~l~~la~~lgv~~~~l~~~~ 131 (141)
T 3kxa_A 111 KTVQKLANALGVSPLEVRAAF 131 (141)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHh
Confidence 456789999999999998754
No 103
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.01 E-value=88 Score=20.23 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=22.9
Q ss_pred ceeccCccchHHHHHHhhhhhcCChhh
Q psy16018 57 TGLISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 57 tg~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
+=.|+.-.+|.+|-++|++.++|++++
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~ 71 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQ 71 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSS
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcce
Confidence 345677789999999999999998765
No 104
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=35.66 E-value=18 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=23.3
Q ss_pred ceeccCccchHHHHHHhhhhhcCChh
Q psy16018 57 TGLISGFSNVRELYQKIAECYEFPAE 82 (89)
Q Consensus 57 tg~I~gF~nvkELY~kIae~f~i~~~ 82 (89)
+..++-..++++|++++.+.|+|+++
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~ 180 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAE 180 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTT
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCC
Confidence 46678899999999999999999886
No 105
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.59 E-value=18 Score=21.55 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=18.3
Q ss_pred cchHHHHHHhhhhhcCChhh
Q psy16018 64 SNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 64 ~nvkELY~kIae~f~i~~~e 83 (89)
.+|.+|-++|++..++|+++
T Consensus 32 ~TV~~LK~~i~~~~gip~~~ 51 (92)
T 1wxv_A 32 PVVQDLAQVVEEVIGVPQSF 51 (92)
T ss_dssp CBHHHHHHHHHHHTCCCTTT
T ss_pred CcHHHHHHHHHHHHCcCHHH
Confidence 78999999999999999875
No 106
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=34.65 E-value=15 Score=20.68 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=12.7
Q ss_pred HHHHHHh----hhhhcCChhhHh
Q psy16018 67 RELYQKI----AECYEFPAEEVS 85 (89)
Q Consensus 67 kELY~kI----ae~f~i~~~eIl 85 (89)
++||+.| +++.++++++|.
T Consensus 16 ~~L~~~it~~~~~~lg~~~~~v~ 38 (62)
T 3m20_A 16 REFVERLTSVAAEIYGMDRSAIT 38 (62)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSCE
T ss_pred HHHHHHHHHHHHHHhCcCcceEE
Confidence 4455555 477889988764
No 107
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=34.38 E-value=22 Score=20.77 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=13.4
Q ss_pred HHHHHHhhhhhcCChhhHh
Q psy16018 67 RELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 67 kELY~kIae~f~i~~~eIl 85 (89)
+++.+.+.+++++++++|.
T Consensus 22 ~~l~~~l~~~lgip~~~v~ 40 (76)
T 1gyx_A 22 ADITDVIIRHLNSKDSSIS 40 (76)
T ss_dssp HHHHHHHHHHHTCCGGGCE
T ss_pred HHHHHHHHHHhCcCCceEE
Confidence 3445555588999998874
No 108
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=34.27 E-value=25 Score=22.04 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=16.1
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+.-.+||++|+++++.+|.
T Consensus 57 ~~~~kla~~lgvs~~~ll~ 75 (104)
T 3trb_A 57 DTALRLAKFFGTTPEFWLN 75 (104)
T ss_dssp HHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhC
Confidence 5678899999999988774
No 109
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=33.96 E-value=31 Score=22.29 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.0
Q ss_pred chHHHHHHhhhhhcCChhhHhh
Q psy16018 65 NVRELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 65 nvkELY~kIae~f~i~~~eIl~ 86 (89)
++.++-+.+|+.|+|+++||..
T Consensus 6 t~~~I~~~Va~~f~v~~~dl~s 27 (101)
T 3pvv_A 6 SAATIMAATAEYFDTTVEELRG 27 (101)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHS
T ss_pred CHHHHHHHHHHHHCCCHHHHhC
Confidence 4677888999999999999974
No 110
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=33.65 E-value=27 Score=20.80 Aligned_cols=19 Identities=0% Similarity=-0.038 Sum_probs=15.5
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|+++++.++.
T Consensus 61 ~~l~~l~~~l~v~~~~ll~ 79 (104)
T 3cec_A 61 DIAIRLGKALGNGPRLWLN 79 (104)
T ss_dssp HHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHh
Confidence 4567899999999987764
No 111
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=33.49 E-value=33 Score=22.16 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=25.3
Q ss_pred CCCceeeeeecccCCCceeccCccchHHHHHHhhhhhcCChhhHh
Q psy16018 41 SKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 41 ~~p~LvFh~QLAHGSptg~I~gF~nvkELY~kIae~f~i~~~eIl 85 (89)
.-|.++|--. |-..+++.|+.+..+|-+.|.+...-++.++.
T Consensus 91 ~iPT~~~fk~---G~~v~~~~G~~~~~~l~~~i~~~l~~~~~~~~ 132 (142)
T 2es7_A 91 RFPATLVFTD---GKLRGALSGIHPWAELLTLMRSIVDTPAAQET 132 (142)
T ss_dssp SSSEEEEESC---C----CEESCCCHHHHHHHHHHHHC-------
T ss_pred cCCeEEEEeC---CEEEEEEeCCCCHHHHHHHHHHHhcccccCCC
Confidence 3567777644 99999999999999999999888776666543
No 112
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=33.49 E-value=23 Score=21.82 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=17.7
Q ss_pred cCccchHHHHHHhhhhhcCC
Q psy16018 61 SGFSNVRELYQKIAECYEFP 80 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~ 80 (89)
...++..++|..++++|++|
T Consensus 9 ~~i~~~~~~~~~l~~~l~~P 28 (90)
T 2za4_B 9 EQIRSISDLHQTLKKELALP 28 (90)
T ss_dssp GGCCSHHHHHHHHHHHTTCC
T ss_pred CCcCCHHHHHHHHHHHhCCC
Confidence 45788899999999999997
No 113
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=33.30 E-value=25 Score=24.43 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=18.4
Q ss_pred hHHHHHHhhhhhcCChhhHhhhc
Q psy16018 66 VRELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl~~~ 88 (89)
+..|-+.+|++-++|++||+++|
T Consensus 48 ~~~lv~a~s~~~g~~~~~ll~~f 70 (188)
T 3sj5_A 48 VRRIFAKVSEKTGKNVNEIWREV 70 (188)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHH
Confidence 34455667799999999999987
No 114
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=33.22 E-value=28 Score=20.96 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=21.4
Q ss_pred eccCccchHHHHHHhhhhhcCChhh
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
.|+.=.+|.+|-++|++..+||+++
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~ 47 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPER 47 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTT
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHH
Confidence 3466689999999999999999875
No 115
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=33.14 E-value=26 Score=19.83 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=26.2
Q ss_pred CCceeeeeecccCCCceeccCccchHHHHHHhhhhh
Q psy16018 42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECY 77 (89)
Q Consensus 42 ~p~LvFh~QLAHGSptg~I~gF~nvkELY~kIae~f 77 (89)
-|.++|.. .|....++.|+.+..+|.+.|.+..
T Consensus 77 ~Pt~~~~~---~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 77 VPQILYFK---DGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp SCEEEEEE---TTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred CCEEEEEE---CCEEEEEEeccCCHHHHHHHHHHHh
Confidence 56777763 4888899999999999998887653
No 116
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=32.92 E-value=18 Score=22.51 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=15.6
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|++++++++.
T Consensus 66 ~~l~~ia~~l~v~~~~l~~ 84 (111)
T 3mlf_A 66 SLLSKYMSAFNVKYDDIFL 84 (111)
T ss_dssp HHHHHHHHHHTCCGGGEEC
T ss_pred HHHHHHHHHhCcCHHHHhC
Confidence 4568899999999998763
No 117
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=32.82 E-value=43 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=24.0
Q ss_pred ceeccCccchHHHHHHhhhhhcCChhh
Q psy16018 57 TGLISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 57 tg~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
+=.|+.-.+|.+|=++|++..++|+++
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~ 60 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQ 60 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHH
Confidence 456889999999999999999999875
No 118
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=32.59 E-value=15 Score=21.31 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=14.9
Q ss_pred HHHHHhhhhhcCChhhHh
Q psy16018 68 ELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl 85 (89)
+...+||++|++++++++
T Consensus 56 ~~l~~la~~l~v~~~~l~ 73 (91)
T 1x57_A 56 QVLGKIERAIGLKLRGKD 73 (91)
T ss_dssp HHHHHHHHHHTBCCSSTT
T ss_pred HHHHHHHHHHCcCHHHHc
Confidence 456789999999998865
No 119
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=32.51 E-value=34 Score=19.58 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=21.5
Q ss_pred eeccCccchHHHHHHhhhh---hcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAEC---YEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~---f~i~~~eI 84 (89)
=.|+.-.+|.+|-++|++. .++++++.
T Consensus 20 ~~v~~~~TV~~lK~~i~~~~~~~gip~~~q 49 (85)
T 2wyq_A 20 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQ 49 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCTTTCCGGGE
T ss_pred EEECCCCCHHHHHHHHHhhccccCCCHHHe
Confidence 3566778999999999997 56887763
No 120
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=32.44 E-value=28 Score=21.71 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=21.8
Q ss_pred eccC-ccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISG-FSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~g-F~nvkELY~kIae~f~i~~~eI 84 (89)
.|+. -.+|.+|-++|++..+||+++.
T Consensus 46 ~v~~l~~TV~~LK~~I~~~~gip~~~Q 72 (111)
T 1we6_A 46 TVQSLSENVGSLKEKIAGEIQIPANKQ 72 (111)
T ss_dssp EESCSSSBHHHHHHHHHHHTTCCTTTS
T ss_pred EecCCCCcHHHHHHHHHHHHCCCHHHe
Confidence 4565 6889999999999999998763
No 121
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=32.33 E-value=27 Score=23.92 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=19.6
Q ss_pred chHHHHHHhhhhhcCChhhHhhhc
Q psy16018 65 NVRELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 65 nvkELY~kIae~f~i~~~eIl~~~ 88 (89)
-+..|-+.+|++-++|.+||+++|
T Consensus 46 ~~~~lv~a~s~~~g~~~~~ll~~f 69 (181)
T 2kii_A 46 ELFSIVQDVAQRLNMPIQDVVKAF 69 (181)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHH
Confidence 345566778899999999999987
No 122
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=32.13 E-value=27 Score=20.81 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=18.7
Q ss_pred cCccchHHHHHHhhhhhcCChhh
Q psy16018 61 SGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~~e 83 (89)
+.=+.|.+|.++|++..+|+++.
T Consensus 18 ~~~~Tv~~Lk~~I~~~~gi~~~~ 40 (86)
T 2kzr_A 18 SSRTRLRELQGQIAAITGIAPGS 40 (86)
T ss_dssp CTTCBHHHHHHHHHHHTCCCTTT
T ss_pred CCCCCHHHHHHHHHHHhCCCccc
Confidence 34468999999999999998654
No 123
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.08 E-value=25 Score=21.01 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.9
Q ss_pred CccchHHHHHHhhhhh--cCChhh
Q psy16018 62 GFSNVRELYQKIAECY--EFPAEE 83 (89)
Q Consensus 62 gF~nvkELY~kIae~f--~i~~~e 83 (89)
.-.+|.+|-++|++.+ ++++++
T Consensus 28 ~~~TV~~lK~~I~~~~~~~i~~~~ 51 (93)
T 1wgd_A 28 RGWSVGHLKAHLSRVYPERPRPED 51 (93)
T ss_dssp TTSCHHHHHHHHHHHSTTCCCTTT
T ss_pred CCCcHHHHHHHHHHHhcCCCChHH
Confidence 7789999999999998 998876
No 124
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=32.05 E-value=25 Score=22.55 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=18.8
Q ss_pred cchHHHHHHhhhhhcCChhhHh
Q psy16018 64 SNVRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 64 ~nvkELY~kIae~f~i~~~eIl 85 (89)
.+..+|+.+|++.+.+++++|.
T Consensus 24 ~~y~~L~~~l~~kL~l~~~~~~ 45 (83)
T 1oey_A 24 LPYSQVRDMVSKKLELRLEHTK 45 (83)
T ss_dssp CCHHHHHHHHHHHTTCCGGGCC
T ss_pred CCHHHHHHHHHHHhCCCcceeE
Confidence 4778999999999999987753
No 125
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=32.01 E-value=27 Score=21.87 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=22.8
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
=.|+.-.+|.+|-++|++..+++++++
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~q 76 (111)
T 2ojr_A 50 LEVEPSDTIENVKAKIQDKEGIPPDQQ 76 (111)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCTTTE
T ss_pred EEeCCCCCHHHHHHHHHHHHCcCcccE
Confidence 456777899999999999999998753
No 126
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.91 E-value=20 Score=23.32 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.2
Q ss_pred ccCccchHHHHHHhhhhhcCChhhH
Q psy16018 60 ISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 60 I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
|+-=..|.+|=++|++.+++|++++
T Consensus 36 v~~~~TV~~lK~kI~~k~gip~~qQ 60 (100)
T 1wju_A 36 TRLHITGRELRSKIAETFGLQENYI 60 (100)
T ss_dssp EESSSBHHHHHHHHHHHTTCCSTTC
T ss_pred eCCcCHHHHHHHHHHHHHCcCHHHe
Confidence 4455789999999999999998873
No 127
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.86 E-value=29 Score=16.93 Aligned_cols=17 Identities=0% Similarity=-0.035 Sum_probs=13.0
Q ss_pred HHHhhhhhcCChhhHhh
Q psy16018 70 YQKIAECYEFPAEEVSE 86 (89)
Q Consensus 70 Y~kIae~f~i~~~eIl~ 86 (89)
+..||+.++++..-|-+
T Consensus 24 ~~~IA~~lgis~~Tv~~ 40 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRV 40 (51)
T ss_dssp HHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 66789999998776543
No 128
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.84 E-value=26 Score=20.39 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=15.1
Q ss_pred HHHHhhhhhcCChhhHhh
Q psy16018 69 LYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 69 LY~kIae~f~i~~~eIl~ 86 (89)
-...||+.|+++..+|++
T Consensus 25 TL~~IA~~~~~~~~~l~~ 42 (77)
T 2djp_A 25 TLAGLALKYGVTMEQIKR 42 (77)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHH
Confidence 456799999999999875
No 129
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=29.37 E-value=30 Score=21.77 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.2
Q ss_pred eccCccchHHHHHHhhhhhcCChhh
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
.|+.-.+|.+|-++|++..+||+++
T Consensus 51 ~v~~~~TV~~LK~~I~~~~gip~~~ 75 (115)
T 1we7_A 51 TLPLTDQVSVIKVKIHEATGMPAGK 75 (115)
T ss_dssp EECSCSBTHHHHHHHHHHSSCCTTT
T ss_pred EECCCCCHHHHHHHHHHHHCCChHH
Confidence 3555689999999999999999876
No 130
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=29.26 E-value=22 Score=22.22 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=18.7
Q ss_pred cchHHHHHHhhhhh--cCChhh
Q psy16018 64 SNVRELYQKIAECY--EFPAEE 83 (89)
Q Consensus 64 ~nvkELY~kIae~f--~i~~~e 83 (89)
.+|.+|-++|++.. ++++++
T Consensus 45 ~TV~~LK~~i~~~~~~gip~~~ 66 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESVPDPE 66 (107)
T ss_dssp CBHHHHHHHHHHHCTTTCCCSS
T ss_pred CCHHHHHHHHHHHhccCCChhh
Confidence 78999999999999 999887
No 131
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.22 E-value=45 Score=21.30 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=32.0
Q ss_pred ceeeeeecccCCCceeccCccchHHHHHHhhhhhcCChhh
Q psy16018 44 KLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 44 ~LvFh~QLAHGSptg~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
-+.|.+.+.-..-+=.|+.=++|.+|=++|.+..+|||++
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~ 48 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSK 48 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTT
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhH
Confidence 4779988854444455677789999999999999999875
No 132
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=29.14 E-value=33 Score=22.07 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=22.9
Q ss_pred ceeccCccchHHHHHHhhhhhcCChhh
Q psy16018 57 TGLISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 57 tg~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
+-+|+--.+|.+|-++|++..+||+++
T Consensus 21 e~~v~~~~TV~~lK~ki~~~~Gip~~~ 47 (122)
T 1t0y_A 21 EKKYPAGMSLNDLKKKLELVVGTTVDS 47 (122)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCTTT
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHH
Confidence 345666789999999999999999875
No 133
>3kq0_A Alpha-1-acid glycoprotein 1; plasma protein, polymorphism, acute phase protein, secreted, pyrrolidone carboxylic acid, lipocalin; 1.80A {Homo sapiens} PDB: 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=28.56 E-value=21 Score=23.78 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=18.8
Q ss_pred chHHHHHHhhhhhcCChhhHh
Q psy16018 65 NVRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 65 nvkELY~kIae~f~i~~~eIl 85 (89)
.+.|-|++.|++.||+.++|+
T Consensus 136 e~le~F~~~a~~~G~~~~~ii 156 (192)
T 3kq0_A 136 EQLGEFYEALDCLRIPKSDVV 156 (192)
T ss_dssp TTTHHHHHHHHHHTCCGGGCE
T ss_pred HHHHHHHHHHHHCCCCHHHEE
Confidence 467889999999999999987
No 134
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=28.04 E-value=47 Score=21.40 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=22.5
Q ss_pred eccCccchHHHHHHhhhhhcCChhh
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
.|+...+|.+|=++|++.+++|+++
T Consensus 18 ~v~~~~tV~~lK~~I~~~~gip~~~ 42 (159)
T 3rt3_B 18 SLSSSMSVSELKAQITQKIGVHAFQ 42 (159)
T ss_dssp ECCTTCCHHHHHHHHHHHHCCCGGG
T ss_pred EeCCCCcHHHHHHHHHHHhCCCHHH
Confidence 5778899999999999999999865
No 135
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.99 E-value=36 Score=20.96 Aligned_cols=25 Identities=0% Similarity=-0.166 Sum_probs=21.7
Q ss_pred eccCccchHHHHHHhhhhhcCChhh
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
.|+.-.+|.+|-++|++..+||+++
T Consensus 23 ~v~~~~TV~~lK~~I~~~tgip~~~ 47 (96)
T 1wgg_A 23 ELNTDEPPMVFKAQLFALTGVQPAR 47 (96)
T ss_dssp EEESSSCHHHHHHHHHHHTCCCTTT
T ss_pred EECCCCcHHHHHHHHHHHHCcCHHH
Confidence 4566789999999999999999875
No 136
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=27.87 E-value=44 Score=18.16 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=19.0
Q ss_pred chHHHHHHhhhhhcCChhhHhhh
Q psy16018 65 NVRELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 65 nvkELY~kIae~f~i~~~eIl~~ 87 (89)
.+.+-.+.+|+..+.+.++|+++
T Consensus 13 ~l~~~l~~lA~~~~rs~s~lir~ 35 (52)
T 2gpe_A 13 ATRERIKSAATRIDRTPHWLIKQ 35 (52)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHH
Confidence 35667788899999999999986
No 137
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=27.56 E-value=37 Score=23.43 Aligned_cols=22 Identities=32% Similarity=0.232 Sum_probs=17.6
Q ss_pred HHHHHHhhhhhcCChhhHhhhc
Q psy16018 67 RELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 67 kELY~kIae~f~i~~~eIl~~~ 88 (89)
..|-+.+|++-++|.+||+++|
T Consensus 49 ~~lv~~~s~~~g~~~~~ll~~f 70 (189)
T 3tfg_A 49 YHLVGAASEVLGKPAEEWWIAF 70 (189)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHH
Confidence 3455566799999999999986
No 138
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=27.45 E-value=33 Score=22.47 Aligned_cols=20 Identities=20% Similarity=0.051 Sum_probs=16.4
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++.+
T Consensus 54 ~~l~~ia~~l~v~~~~l~~~ 73 (192)
T 1y9q_A 54 ATLWKIASGLEASFSAFFAN 73 (192)
T ss_dssp HHHHHHHHHHTCCSGGGGTT
T ss_pred HHHHHHHHHHCcCHHHHcCC
Confidence 34578999999999999853
No 139
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=27.41 E-value=43 Score=22.69 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=27.0
Q ss_pred CceeeeeecccCCCceeccCccchHHHHHHhh----hhhcCChhhHh
Q psy16018 43 PKLIFHCQLAHGSPTGLISGFSNVRELYQKIA----ECYEFPAEEVS 85 (89)
Q Consensus 43 p~LvFh~QLAHGSptg~I~gF~nvkELY~kIa----e~f~i~~~eIl 85 (89)
..++++..+-+|=..-. -++||++|+ ++.++++++|+
T Consensus 61 ~~v~I~i~~~~GRt~eq------K~~L~~~I~~~l~~~~g~~~edV~ 101 (149)
T 3mf7_A 61 DTIFVHGLHREGRSADL------KGQLAQRIVDDVSVAAEIDRKHIW 101 (149)
T ss_dssp CCEEEEEEEESCCCHHH------HHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CEEEEEEEecCCCCHHH------HHHHHHHHHHHHHHHcCCChhhEE
Confidence 35778999877654433 578999988 66788988874
No 140
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.26 E-value=37 Score=20.45 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=20.3
Q ss_pred eccCccchHHHHHHhhhh---hcCChhh
Q psy16018 59 LISGFSNVRELYQKIAEC---YEFPAEE 83 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~---f~i~~~e 83 (89)
.|+.-.+|.+|-++|++. .++|+++
T Consensus 16 ~v~~~~TV~~LK~~I~~~~~~~gip~~~ 43 (95)
T 1uel_A 16 DIDPEETVKALKEKIESEKGKDAFPVAG 43 (95)
T ss_dssp ECCTTSBHHHHHHHHHHHHCTTTCCTTT
T ss_pred EECCCCHHHHHHHHHHhhcccCCCChhh
Confidence 456668999999999998 5688765
No 141
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=27.23 E-value=43 Score=20.99 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=23.1
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
=.|+.-.+|.+|=++|++.+++|+++.
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~Q 76 (111)
T 3vdz_A 50 LEVEPSDTIENVKAKIQDKEGIPPDQQ 76 (111)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEeCCCCCHHHHHHHHHHHhCCChHHE
Confidence 357778899999999999999998753
No 142
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=27.23 E-value=40 Score=20.67 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=22.9
Q ss_pred eeccCccchHHHHHHhhhhhcCChhh
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
-+++--.+|.+|=+||.+.+|||+++
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~ 44 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEY 44 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGG
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHH
Confidence 46777789999999999999999976
No 143
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=27.18 E-value=42 Score=17.97 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=16.0
Q ss_pred HHHHHHh---hhhhcCChhhHhhhc
Q psy16018 67 RELYQKI---AECYEFPAEEVSEDF 88 (89)
Q Consensus 67 kELY~kI---ae~f~i~~~eIl~~~ 88 (89)
.||++.| |+..+++.++++++.
T Consensus 18 ~el~~~l~~~a~~~g~s~s~~ir~a 42 (55)
T 2k9i_A 18 QEWHDRLMEIAKEKNLTLSDVCRLA 42 (55)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4566554 566799999999863
No 144
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=26.25 E-value=13 Score=21.08 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=14.5
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|++++++++.
T Consensus 55 ~~l~~i~~~l~~~~~~l~~ 73 (88)
T 2wiu_B 55 TTFFKILQSLELSMTLCDA 73 (88)
T ss_dssp HHHHHHHHHTTCEEEEEC-
T ss_pred HHHHHHHHHhCCCHHHhcc
Confidence 4567899999999887763
No 145
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=26.01 E-value=43 Score=20.10 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=15.4
Q ss_pred HHHHHhhhhhcCChhhHhh
Q psy16018 68 ELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~ 86 (89)
+...+||++|+++++.++.
T Consensus 54 ~~l~~la~~l~~~~~~l~~ 72 (113)
T 2eby_A 54 EMAFRLAKVFDTTVDFWLN 72 (113)
T ss_dssp HHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHc
Confidence 4566899999999988764
No 146
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=25.92 E-value=37 Score=19.42 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=25.9
Q ss_pred CCceeeeeecccCCCceeccCccchHHHHHHhhhhh
Q psy16018 42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECY 77 (89)
Q Consensus 42 ~p~LvFh~QLAHGSptg~I~gF~nvkELY~kIae~f 77 (89)
-|.++|-- .|-...++.|+.+..+|-+.|.+.+
T Consensus 72 ~Pt~~~~~---~G~~~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 72 GPTVLLFY---NGKEILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp CCEEEEEE---TTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred CCEEEEEe---CCeEEEEEeCCcCHHHHHHHHHHhh
Confidence 46777763 4888889999999999988887654
No 147
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=25.87 E-value=42 Score=21.83 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=22.3
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
.|+-=.+|.+|=++|++..++|++++
T Consensus 37 ~v~p~DTI~~LK~~I~~k~Gip~~qQ 62 (93)
T 3plu_A 37 KCLGEDSVGDFKKVLSLQIGTQPNKI 62 (93)
T ss_dssp EEETTSBHHHHHHHHHHHHTCCGGGE
T ss_pred EECCcCHHHHHHHHHHHHhCCCHHHE
Confidence 35566889999999999999999875
No 148
>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}
Probab=25.63 E-value=31 Score=22.06 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=17.6
Q ss_pred chHHHHHHhhhhhcCChhhHh
Q psy16018 65 NVRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 65 nvkELY~kIae~f~i~~~eIl 85 (89)
.-.+.|+.+++.++++++|++
T Consensus 174 p~~~~~~~~~~~lgi~~~~~~ 194 (254)
T 3umc_A 174 PDPQVYLGACRLLDLPPQEVM 194 (254)
T ss_dssp TSHHHHHHHHHHHTCCGGGEE
T ss_pred CCHHHHHHHHHHcCCChHHEE
Confidence 346789999999999998875
No 149
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.14 E-value=40 Score=18.27 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.0
Q ss_pred HHHHhhhhhcCChhhHh
Q psy16018 69 LYQKIAECYEFPAEEVS 85 (89)
Q Consensus 69 LY~kIae~f~i~~~eIl 85 (89)
-|+.||+.++++..-|-
T Consensus 33 s~~eIA~~lgis~~tv~ 49 (70)
T 2o8x_A 33 SYADAAAVCGCPVGTIR 49 (70)
T ss_dssp CHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHCcCHHHHH
Confidence 57889999999987664
No 150
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=24.94 E-value=57 Score=21.37 Aligned_cols=28 Identities=18% Similarity=0.021 Sum_probs=23.7
Q ss_pred ceeccCccchHHHHHHhhhhhcCChhhH
Q psy16018 57 TGLISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 57 tg~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
+=.|+.-..|.+|=++|++.++||+++.
T Consensus 40 ~l~V~ps~TV~~LK~~I~~k~Gipp~~Q 67 (105)
T 4dbg_A 40 WLTVRPDMTVASLKDMVFLDYGFPPVLQ 67 (105)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEEECCcChHHHHHHHHHHHhCCCHHHE
Confidence 4467788899999999999999999753
No 151
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=24.67 E-value=34 Score=21.15 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=17.3
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
-.+.|+.+++.++++++|++
T Consensus 159 k~~~~~~~~~~lgi~~~~~i 178 (234)
T 3ddh_A 159 TEKEYLRLLSILQIAPSELL 178 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEE
T ss_pred CHHHHHHHHHHhCCCcceEE
Confidence 46789999999999999875
No 152
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=24.67 E-value=62 Score=22.01 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=23.0
Q ss_pred cCccchHHHHHHhhhhhcCChhhHhhhc
Q psy16018 61 SGFSNVRELYQKIAECYEFPAEEVSEDF 88 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~~eIl~~~ 88 (89)
-||+|..-.+..--+.+|++|.+..+.+
T Consensus 243 ~Gf~~~s~F~r~Fkk~~G~tP~~yR~~~ 270 (276)
T 3gbg_A 243 SGFASVSYFSTVFKSTMNVAPSEYLFML 270 (276)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHHHHHT
T ss_pred hCCCCHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4888888888888899999998876543
No 153
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=24.29 E-value=32 Score=21.77 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.8
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
-.+.|..+++.++++|+|++
T Consensus 142 ~p~~~~~a~~~lg~~p~e~l 161 (216)
T 3kbb_A 142 DPEIYLLVLERLNVVPEKVV 161 (216)
T ss_dssp STHHHHHHHHHHTCCGGGEE
T ss_pred cHHHHHHHHHhhCCCccceE
Confidence 45789999999999998864
No 154
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=24.27 E-value=35 Score=21.27 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=16.9
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
-.+.|+.+++.++++++|++
T Consensus 160 ~~~~~~~~~~~lgi~~~~~~ 179 (235)
T 2om6_A 160 RKEMFEKVLNSFEVKPEESL 179 (235)
T ss_dssp CHHHHHHHHHHTTCCGGGEE
T ss_pred CHHHHHHHHHHcCCCccceE
Confidence 36789999999999998875
No 155
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=24.14 E-value=32 Score=21.70 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=16.5
Q ss_pred hHHHHHHhhhhhcCChhhH
Q psy16018 66 VRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eI 84 (89)
++++++.++++++.|++++
T Consensus 19 ~~~i~~al~~~lg~p~~~~ 37 (128)
T 1mww_A 19 AEVIYNSLHLGLDIPKGKH 37 (128)
T ss_dssp HHHHHHHHHHHHCCCTTSS
T ss_pred HHHHHHHHHHHHCcChHHE
Confidence 4678999999999999876
No 156
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A
Probab=23.88 E-value=36 Score=21.40 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=17.2
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
-.+.|+.+++.++++++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~ 176 (234)
T 3u26_A 157 HPRIFELALKKAGVKGEEAV 176 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEE
T ss_pred CHHHHHHHHHHcCCCchhEE
Confidence 46789999999999999875
No 157
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=23.75 E-value=38 Score=22.14 Aligned_cols=19 Identities=11% Similarity=0.086 Sum_probs=15.7
Q ss_pred HHHHhhhhhcCChhhHhhh
Q psy16018 69 LYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 69 LY~kIae~f~i~~~eIl~~ 87 (89)
...+||++|+++.++++.+
T Consensus 55 ~l~~ia~~l~~~~~~l~~~ 73 (198)
T 2bnm_A 55 QLGRIAHVLGTSIGALTPP 73 (198)
T ss_dssp HHHHHHHHTTSCTGGGSCC
T ss_pred HHHHHHHHhCCCHHHEEcc
Confidence 4568999999999998753
No 158
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=23.71 E-value=37 Score=22.03 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=16.1
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
++++++.+++++++|+++++
T Consensus 21 ~~~it~al~~~lg~p~~~v~ 40 (148)
T 3n4h_A 21 AEAITDAHHELAHAPKYLVQ 40 (148)
T ss_dssp HHHHHHHHHHHHTCCGGGCE
T ss_pred HHHHHHHHHHHHCcCcccEE
Confidence 45677788899999998875
No 159
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=23.51 E-value=37 Score=21.24 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=16.8
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
-.+.|+.+++.+++++++++
T Consensus 164 ~~~~~~~~~~~lgi~~~~~~ 183 (240)
T 3qnm_A 164 RPEIFHFALSATQSELRESL 183 (240)
T ss_dssp SHHHHHHHHHHTTCCGGGEE
T ss_pred CHHHHHHHHHHcCCCcccEE
Confidence 35789999999999998875
No 160
>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* 2w4n_A* 2yep_A*
Probab=23.51 E-value=18 Score=26.08 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=23.2
Q ss_pred cCccchHHHHHHhhhhhcCChhhHh
Q psy16018 61 SGFSNVRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~~eIl 85 (89)
.|+.+.++.-+..|+.++++++||+
T Consensus 76 ~G~~da~~~~~~~A~~lg~~~~~Vl 100 (173)
T 2v4i_A 76 EGEENAREVREAVARALGLPEGEML 100 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHHHHHHHhCCCchhEE
Confidence 4899999999999999999999986
No 161
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=23.40 E-value=40 Score=20.77 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=17.4
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
.+++++.++++++.|++-++
T Consensus 20 ~~~~~~~l~~~lgkP~~~~~ 39 (115)
T 1uiz_A 20 LSDLTKQLAKATGKPAEYIA 39 (115)
T ss_dssp HHHHHHHHHHHHTCCGGGCE
T ss_pred HHHHHHHHHHHHCcChhHEE
Confidence 67899999999999988654
No 162
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=23.12 E-value=35 Score=20.79 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.9
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
-.+.|+.+++.++++++|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~i 161 (216)
T 2pib_A 142 DPEIYLLVLERLNVVPEKVV 161 (216)
T ss_dssp STHHHHHHHHHHTCCGGGEE
T ss_pred CcHHHHHHHHHcCCCCceEE
Confidence 34789999999999998875
No 163
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=23.11 E-value=51 Score=20.59 Aligned_cols=28 Identities=14% Similarity=-0.162 Sum_probs=23.8
Q ss_pred CceeccCccchHHHHHHhhhhhcCChhh
Q psy16018 56 PTGLISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 56 ptg~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
-+-+|+--.+|.+|=++|.+.++||+++
T Consensus 30 ~~~~v~~~~TV~~LK~kI~~~~GiP~~~ 57 (95)
T 2kjr_A 30 FEVKLAKDLTVAQLKTKLEILTGGCAGT 57 (95)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCSCTTT
T ss_pred EEEEeCccCHHHHHHHHHHHHHCcCHHH
Confidence 3456777789999999999999999875
No 164
>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}
Probab=23.07 E-value=38 Score=21.30 Aligned_cols=20 Identities=5% Similarity=-0.082 Sum_probs=17.6
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
-.+.|+.+++.++++++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~ 176 (230)
T 3vay_A 157 DPAPFLEALRRAKVDASAAV 176 (230)
T ss_dssp SHHHHHHHHHHHTCCGGGEE
T ss_pred CHHHHHHHHHHhCCCchheE
Confidence 46899999999999999875
No 165
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=23.04 E-value=1.2e+02 Score=20.37 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=23.8
Q ss_pred eeccCccchHHHHHHhhhhhcCChhhHhhh
Q psy16018 58 GLISGFSNVRELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 58 g~I~gF~nvkELY~kIae~f~i~~~eIl~~ 87 (89)
|....-.++.+.+++||+..+++.+++.+-
T Consensus 218 g~~~~p~~l~~~~~~la~~~g~~~e~~~~~ 247 (259)
T 1zzm_A 218 GQPNRPEQAARVFAVLCELRREPADEIAQA 247 (259)
T ss_dssp TSCCCGGGHHHHHHHHHHHCSSCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 344555678999999999999999988653
No 166
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=22.94 E-value=51 Score=17.43 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=12.7
Q ss_pred HHHhhhhhcCChhhHhh
Q psy16018 70 YQKIAECYEFPAEEVSE 86 (89)
Q Consensus 70 Y~kIae~f~i~~~eIl~ 86 (89)
++.||+.++++..-|-+
T Consensus 34 ~~eIA~~lgis~~TV~~ 50 (55)
T 2x48_A 34 VQQIANALGVSERKVRR 50 (55)
T ss_dssp HHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 56788888888876654
No 167
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=22.61 E-value=64 Score=23.34 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=26.0
Q ss_pred ceeccCccchHHHHHHhhhhhcCChhhHhhh
Q psy16018 57 TGLISGFSNVRELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 57 tg~I~gF~nvkELY~kIae~f~i~~~eIl~~ 87 (89)
-|+.+.=.+|.+.+++||+.-+++.+|+.+-
T Consensus 203 rg~~n~P~~v~~v~~~iA~~~g~~~ee~~~~ 233 (254)
T 3gg7_A 203 DGQAALPWDVKSVVEGLSKIWQIPASEVERI 233 (254)
T ss_dssp TTEECCGGGHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 3566677889999999999999999988653
No 168
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=22.42 E-value=42 Score=20.62 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=16.9
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
.+++++.++++++.|++-|+
T Consensus 20 ~~~~~~~l~~~lgkp~~~~~ 39 (115)
T 2xcz_A 20 LQELSSKLAELLGKPEKYVM 39 (115)
T ss_dssp HHHHHHHHHHHHTCCGGGCE
T ss_pred HHHHHHHHHHHHCCChHHEE
Confidence 67899999999999988654
No 169
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=22.12 E-value=67 Score=16.58 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=15.5
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+-...+|+..+++.++++++
T Consensus 15 ~~Ld~~a~~~g~srS~~ir~ 34 (45)
T 2cpg_A 15 ENLEKMAREMGLSKSAMISV 34 (45)
T ss_dssp HHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHH
Confidence 34456678889999999885
No 170
>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}
Probab=21.77 E-value=42 Score=21.20 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=17.0
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
-.+.|+.+++.++++++|++
T Consensus 171 ~~~~~~~~~~~lgi~~~~~~ 190 (254)
T 3umg_A 171 DPQAYLRTAQVLGLHPGEVM 190 (254)
T ss_dssp SHHHHHHHHHHTTCCGGGEE
T ss_pred CHHHHHHHHHHcCCChHHEE
Confidence 46789999999999998875
No 171
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=21.77 E-value=60 Score=16.14 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=12.2
Q ss_pred HHHhhhhhcCChhhHhh
Q psy16018 70 YQKIAECYEFPAEEVSE 86 (89)
Q Consensus 70 Y~kIae~f~i~~~eIl~ 86 (89)
+..||+.++++..-|-+
T Consensus 24 ~~~ia~~lgvs~~Tv~r 40 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYR 40 (52)
T ss_dssp HHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH
Confidence 45678888888776654
No 172
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=21.59 E-value=42 Score=20.98 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=17.1
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
-.+.|+.+++.+++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~ 173 (230)
T 3um9_A 154 HQKVYELAMDTLHLGESEIL 173 (230)
T ss_dssp CHHHHHHHHHHHTCCGGGEE
T ss_pred ChHHHHHHHHHhCCCcccEE
Confidence 36889999999999998865
No 173
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=21.44 E-value=53 Score=21.93 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.8
Q ss_pred HHHHHhhhhhcCChhhHhhh
Q psy16018 68 ELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 68 ELY~kIae~f~i~~~eIl~~ 87 (89)
+...+||++|++++++++..
T Consensus 47 ~~l~~i~~~l~~~~~~~~~~ 66 (293)
T 3u3w_A 47 DILQGIAAKLQIPIIHFYEV 66 (293)
T ss_dssp HHHHHHHHHHTCCTHHHHHT
T ss_pred HHHHHHHHHhCcCHHHHhCC
Confidence 56789999999999998753
No 174
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=21.41 E-value=61 Score=19.63 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=25.5
Q ss_pred CCceeeeeecccCCCceeccCccchHHHHHHhhhh
Q psy16018 42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAEC 76 (89)
Q Consensus 42 ~p~LvFh~QLAHGSptg~I~gF~nvkELY~kIae~ 76 (89)
-|.++|- ..|...+++.|+.+..+|-+.|.+.
T Consensus 90 ~Pt~~~~---~~G~~~~~~~G~~~~~~l~~~l~~~ 121 (123)
T 1oaz_A 90 IPTLLLF---KNGEVAATKVGALSKGQLKEFLDAN 121 (123)
T ss_dssp SSEEEEE---ESSSEEEEEESCCCHHHHHHHHTTT
T ss_pred cCEEEEE---ECCEEEEEEeCCCCHHHHHHHHHHH
Confidence 5778876 3599999999999988888877653
No 175
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=21.35 E-value=59 Score=20.49 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=24.3
Q ss_pred CceeccCccchHHHHHHhhhhhcCChhh
Q psy16018 56 PTGLISGFSNVRELYQKIAECYEFPAEE 83 (89)
Q Consensus 56 ptg~I~gF~nvkELY~kIae~f~i~~~e 83 (89)
-+-+|+--.+|.+|=++|.+.++|||++
T Consensus 29 ~e~~v~~~~TV~~LK~kIe~~~Gip~~~ 56 (97)
T 2kj6_A 29 ADARFSPQMSVEAVKEKLWKKCGTSVNS 56 (97)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCTTS
T ss_pred EEEEeCCCChHHHHHHHHHHHHCcCHHH
Confidence 4557788899999999999999999875
No 176
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=21.34 E-value=43 Score=21.46 Aligned_cols=22 Identities=5% Similarity=0.164 Sum_probs=18.2
Q ss_pred cchHHHHHHhhhhhcCChhhHh
Q psy16018 64 SNVRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 64 ~nvkELY~kIae~f~i~~~eIl 85 (89)
-.-.+.|.++++.++++|+|++
T Consensus 137 Kp~p~~~~~~~~~lg~~p~~~~ 158 (210)
T 2ah5_A 137 PHKADVIHQALQTHQLAPEQAI 158 (210)
T ss_dssp CSHHHHHHHHHHHTTCCGGGEE
T ss_pred CCChHHHHHHHHHcCCCcccEE
Confidence 3557899999999999998864
No 177
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=21.31 E-value=55 Score=18.17 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=24.8
Q ss_pred CCceeeeeecccCCCceeccCccchHHHHHHhhhh
Q psy16018 42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAEC 76 (89)
Q Consensus 42 ~p~LvFh~QLAHGSptg~I~gF~nvkELY~kIae~ 76 (89)
-|.++|-- .|....++.|+.+..+|-+.|.+.
T Consensus 74 ~Pt~~~~~---~G~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 74 IPTLIVFK---DGQPVDKVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp BSEEEEEE---TTEEEEEEESCCCHHHHHHHHHTT
T ss_pred cCEEEEEe---CCeEEEEEeCCCCHHHHHHHHHHh
Confidence 46776664 488888999999999998877653
No 178
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=21.31 E-value=73 Score=18.42 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=19.9
Q ss_pred chHHHHHHhhhhhcCChhhHhhh
Q psy16018 65 NVRELYQKIAECYEFPAEEVSED 87 (89)
Q Consensus 65 nvkELY~kIae~f~i~~~eIl~~ 87 (89)
.+++-.+.+|+..+.+.++||++
T Consensus 13 el~~rL~~lA~~~~rs~s~lire 35 (58)
T 2ay0_A 13 ATRERIKSAATRIDRTPHWLIKQ 35 (58)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHH
Confidence 46777888999999999999986
No 179
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=21.26 E-value=40 Score=21.05 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=17.0
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
-.+.|+.+++.++++++|++
T Consensus 149 ~~~~~~~~~~~l~~~~~~~i 168 (233)
T 3s6j_A 149 DPDLFLAAAKKIGAPIDECL 168 (233)
T ss_dssp STHHHHHHHHHTTCCGGGEE
T ss_pred ChHHHHHHHHHhCCCHHHEE
Confidence 35789999999999998875
No 180
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=21.22 E-value=50 Score=26.58 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=22.6
Q ss_pred eccCccchHHHHHHhhhhhcCChhhH
Q psy16018 59 LISGFSNVRELYQKIAECYEFPAEEV 84 (89)
Q Consensus 59 ~I~gF~nvkELY~kIae~f~i~~~eI 84 (89)
+|..=+++.|||+.||+.|++++..+
T Consensus 41 rv~k~~~~~~l~~~va~~lg~~~~~~ 66 (530)
T 2ylm_A 41 KVLKNSSLAEFVQSLSQTMGFPQDQI 66 (530)
T ss_dssp EEETTSBHHHHHHHHHHHHTSCGGGE
T ss_pred EEcCcCCHHHHHHHHHHHhCcCcccE
Confidence 66677899999999999999998764
No 181
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=21.18 E-value=46 Score=20.71 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=17.4
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
.+++++.++++++.|++-++
T Consensus 20 ~~~~~~~l~~~lgkP~~~~~ 39 (119)
T 2os5_A 20 EERLTDLLAESMNKPRNRIA 39 (119)
T ss_dssp HHHHHHHHHHHHTCCGGGCE
T ss_pred HHHHHHHHHHHHCcChHHEE
Confidence 68999999999999988654
No 182
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Probab=20.91 E-value=44 Score=21.48 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=16.6
Q ss_pred HHHHHHhhhhhcCChhhHh
Q psy16018 67 RELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 67 kELY~kIae~f~i~~~eIl 85 (89)
.+.|+.+++.+++++++++
T Consensus 176 ~~~~~~~~~~~g~~~~~~~ 194 (229)
T 4dcc_A 176 PEIFKAVTEDAGIDPKETF 194 (229)
T ss_dssp HHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHHcCCCHHHeE
Confidence 4889999999999998875
No 183
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=20.43 E-value=65 Score=17.88 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=23.3
Q ss_pred CCceeeeeecccCCCceeccCccchHHHHHHhhh
Q psy16018 42 KPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAE 75 (89)
Q Consensus 42 ~p~LvFh~QLAHGSptg~I~gF~nvkELY~kIae 75 (89)
-|.++|--+ |...+++.|+ +..+|-+.|.+
T Consensus 74 ~Pt~~~~~~---g~~~~~~~g~-~~~~l~~~l~~ 103 (105)
T 3m9j_A 74 MPTFQFFKK---GQKVGEFSGA-NKEKLEATINE 103 (105)
T ss_dssp SSEEEEEET---TEEEEEEESS-CHHHHHHHHHH
T ss_pred CcEEEEEEC---CeEEEEEeCC-CHHHHHHHHHH
Confidence 467777644 8888999999 88888877765
No 184
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=20.37 E-value=23 Score=26.35 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=23.2
Q ss_pred cCccchHHHHHHhhhhhcCChhhHh
Q psy16018 61 SGFSNVRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 61 ~gF~nvkELY~kIae~f~i~~~eIl 85 (89)
.|+.+.++.-+..|+.++++++||+
T Consensus 107 ~G~~da~~~a~~~A~~lgi~~~~Vl 131 (208)
T 1vra_A 107 RGLDDAYTMRAVGAETFHIPEHYVA 131 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGEE
T ss_pred HHHHHHHHHHHHHHHHhCCChhHEE
Confidence 4899999999999999999999986
No 185
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=20.36 E-value=49 Score=20.21 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=13.1
Q ss_pred HHHHHHhh----hhhcCChhhHh
Q psy16018 67 RELYQKIA----ECYEFPAEEVS 85 (89)
Q Consensus 67 kELY~kIa----e~f~i~~~eIl 85 (89)
++||+.|. +..++++++|.
T Consensus 73 ~~l~~~i~~~l~~~lgi~~~~v~ 95 (113)
T 1hfo_A 73 RDHSAKLFDHLNTKLGIPKNRMY 95 (113)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEE
T ss_pred HHHHHHHHHHHHHHhCcCcCeEE
Confidence 34555555 77889998874
No 186
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=20.32 E-value=43 Score=21.24 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=16.8
Q ss_pred hHHHHHHhhhhhcCChhhHh
Q psy16018 66 VRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 66 vkELY~kIae~f~i~~~eIl 85 (89)
-.+.|+.+++.++++++|++
T Consensus 162 ~~~~~~~~~~~lg~~~~~~i 181 (237)
T 4ex6_A 162 HPDMALHVARGLGIPPERCV 181 (237)
T ss_dssp SSHHHHHHHHHHTCCGGGEE
T ss_pred CHHHHHHHHHHcCCCHHHeE
Confidence 34789999999999998875
No 187
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=20.27 E-value=44 Score=20.31 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.0
Q ss_pred HHHHHHhhhhhcCChhhHh
Q psy16018 67 RELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 67 kELY~kIae~f~i~~~eIl 85 (89)
.+.|+.+++.+++++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~ 166 (214)
T 3e58_A 148 PEIYLTALKQLNVQASRAL 166 (214)
T ss_dssp SHHHHHHHHHHTCCGGGEE
T ss_pred hHHHHHHHHHcCCChHHeE
Confidence 4689999999999998875
No 188
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=20.13 E-value=83 Score=21.57 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=31.4
Q ss_pred CCCCCceeeeeecccCCCceeccCccchHHHHHHhhhhhcCChhhHhh
Q psy16018 39 EDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVSE 86 (89)
Q Consensus 39 ~~~~p~LvFh~QLAHGSptg~I~gF~nvkELY~kIae~f~i~~~eIl~ 86 (89)
+.+..|++++++++-++.+-.+.-|.+.-| +.+|++++|+++
T Consensus 73 ~~~~~ry~l~~~i~D~Tg~~~~t~F~~~ae------~ilG~sA~el~~ 114 (181)
T 1l1o_C 73 PNFKYRMILSVNIADFQENQWVTCFQESAE------AILGQNAAYLGE 114 (181)
T ss_dssp SSCCEEEEEEEEEECSSCEEEEEEEHHHHH------HHHSSCHHHHHH
T ss_pred CCceEEEEEEEEEEeCCCCEEEEEEhHHHH------HHhCCCHHHHHH
Confidence 456789999999998888888888864322 556777777654
No 189
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=20.10 E-value=49 Score=20.28 Aligned_cols=19 Identities=5% Similarity=0.093 Sum_probs=13.5
Q ss_pred HHHHHHhh----hhhcCChhhHh
Q psy16018 67 RELYQKIA----ECYEFPAEEVS 85 (89)
Q Consensus 67 kELY~kIa----e~f~i~~~eIl 85 (89)
++||+.|+ +..++++++|.
T Consensus 74 ~~l~~~i~~~l~~~lgi~~~~v~ 96 (112)
T 3b64_A 74 EKVTSIVTAAITKECGIVADRIF 96 (112)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEE
T ss_pred HHHHHHHHHHHHHHhCcCcceEE
Confidence 45666555 67889998874
No 190
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=20.09 E-value=47 Score=20.77 Aligned_cols=21 Identities=5% Similarity=0.172 Sum_probs=17.8
Q ss_pred chHHHHHHhhhhhcCChhhHh
Q psy16018 65 NVRELYQKIAECYEFPAEEVS 85 (89)
Q Consensus 65 nvkELY~kIae~f~i~~~eIl 85 (89)
+-.+.|+.+++.++++++|++
T Consensus 143 p~~~~~~~~~~~lgi~~~~~i 163 (226)
T 3mc1_A 143 TKEDVIRYAMESLNIKSDDAI 163 (226)
T ss_dssp SHHHHHHHHHHHHTCCGGGEE
T ss_pred CCHHHHHHHHHHhCcCcccEE
Confidence 456889999999999998875
Done!