RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16018
         (89 letters)



>gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional.
          Length = 448

 Score = 28.9 bits (65), Expect = 0.27
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 10/65 (15%)

Query: 32  KSPAPVTEDSKPKLIFHCQLAHGSPTGLISG-FSNVRELYQKIAECYE-------FPAEE 83
           + PAP+ E+ K K+I   ++    P  LI      +RE   + AE  E       FP  +
Sbjct: 378 RPPAPIAEEIKKKIIGDEEVITCRPADLIEPQLEKLREEIAEYAESEEDVLSYALFP--Q 435

Query: 84  VSEDF 88
            ++DF
Sbjct: 436 QAKDF 440


>gnl|CDD|220338 pfam09670, Cas_Cas02710, CRISPR-associated protein
          (Cas_Cas02710).  Members of this family are found,
          exclusively in the vicinity of CRISPR repeats and other
          CRISPR-associated (cas) genes, in Methanothermobacter
          thermautotrophicus (Methanobacterium thermoformicicum),
          Thermus thermophilus (Deinococcus-Thermus),
          Chloroflexus aurantiacus (Chloroflexi), and
          Thermomicrobium roseum (Thermomicrobia).
          Length = 379

 Score = 26.9 bits (60), Expect = 1.4
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 38 TEDSKPKLIFHCQLAHGSP---TGLISGFSNVRELYQKIAECYE----FPAEEVSEDF 88
          +++S PKL    +           LI   ++V E Y+K  E  E    +  EEV  D+
Sbjct: 20 SDESHPKLPEVREDTGLKAKQEFCLIEDANDVLECYKKAREVLEKWNGWEREEVIVDY 77


>gnl|CDD|145067 pfam01718, Orbi_NS1, Orbivirus non-structural protein NS1, or
           hydrophobic tubular protein.  This family consists of
           orbivirus non-structural protein NS1, or hydrophobic
           tubular protein. NS1 has no specific function in virus
           replication, it is however thought to play a role in
           transport of mature virus particles from virus inclusion
           bodies to the cell membrane. Orbivirus are part of the
           larger reoviridae which have a dsRNA genome of at least
           10 segments encoding at least 10 viral proteins;
           orbivirus found in this family include bluetongue virus,
           and African horsesickness virus.
          Length = 546

 Score = 25.4 bits (56), Expect = 3.9
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 3   LFTRKPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSK 42
           +F  KP+ D   +D +++G     I  G        ED  
Sbjct: 466 IFGYKPEADGRYIDWDDLGTFLDIILKGE--DLSELEDED 503


>gnl|CDD|153427 cd07998, WGR_DNA_ligase, WGR domain of bacterial DNA ligases.
          The WGR domain is found in a small family of predicted
          bacterial DNA ligases. It has been called WGR after the
          most conserved central motif of the domain. The domain
          typically occurs in together with an ATP-dependent DNA
          ligase domain, and is between 70 and 80 residues in
          length. It has been proposed to function as a nucleic
          acid binding domain.
          Length = 77

 Score = 24.2 bits (53), Expect = 7.4
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 7  KPKKDDHLLDNNNVGEHKSKIYNGTKSPAPVTEDSKPKLIFH 48
              DD  + N   G   S +  GTK+ APVT ++  K IF 
Sbjct: 21 FEVSDDGYVVNFRYGRRGSALREGTKTVAPVTLEAAEK-IFD 61


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,428,636
Number of extensions: 339608
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 6
Length of query: 89
Length of database: 10,937,602
Length adjustment: 57
Effective length of query: 32
Effective length of database: 8,409,424
Effective search space: 269101568
Effective search space used: 269101568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)