RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16018
(89 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.010
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 13/63 (20%)
Query: 35 APVTEDSKPKLIFHCQLAHGSPTGLISGFS--NVRELYQKIAECYE------FPAEEVS- 85
P+ S P LI QLAH T + GF+ +R + + AE S
Sbjct: 234 IPI---SCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 86 EDF 88
E F
Sbjct: 290 ESF 292
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.13
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 9/30 (30%)
Query: 22 EHKSKIYNGTKSPAPVTEDSKPKLIFHCQL 51
+ K+Y A DS P L +
Sbjct: 26 QASLKLY------AD---DSAPALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 1.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 64 SNVRELYQKIAECYEFPAEEVSEDF 88
N L++ I + Y P S+D
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDL 464
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 25.8 bits (57), Expect = 2.4
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 37 VTEDSKPKLIFHCQLAHGSPTGLISGFSNVRELYQKIAECYEFPAEEVSED 87
D K I + +P G R L A +F + D
Sbjct: 167 AGTDPSVKGI-LFVPTYSNPGGETISLEKARRLAGLQAAAPDFT---IFAD 213
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2,
E.C.2.7.11.17, phosphorylation, AMPKK, metabolism,
binding, calmodulin-binding; HET: 609; 2.40A {Homo
sapiens}
Length = 298
Score = 25.3 bits (56), Expect = 3.2
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 64 SNVRELYQKI-AECYEFPAE-EVSEDFR 89
+ L+ KI ++ EFP + +++ED +
Sbjct: 243 ERIMCLHSKIKSQALEFPDQPDIAEDLK 270
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
2ou7_A* 3fc2_A* 3thb_A*
Length = 335
Score = 24.6 bits (54), Expect = 4.6
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 64 SNVRELYQKIAEC-YEFP 80
S ++E Y +I + Y P
Sbjct: 244 SCLKETYLRIKKNEYSIP 261
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK,
STK18, PSI, structural genomics, protein structure
initiative; HET: ANP; 2.25A {Homo sapiens}
Length = 278
Score = 24.8 bits (55), Expect = 4.8
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 64 SNVRELYQKIAEC-YEFPAEEVSED 87
V+ K+ YE P +S +
Sbjct: 215 DTVKNTLNKVVLADYEMP-SFLSIE 238
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1,
selectivity residues, POLO-like K structure based drug
design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo
sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A*
3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A*
3db6_A* 3dbe_A* 3dbf_A*
Length = 294
Score = 24.5 bits (54), Expect = 4.9
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 64 SNVRELYQKIAEC-YEFP 80
S ++E Y +I + Y P
Sbjct: 218 SCLKETYLRIKKNEYSIP 235
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A
{Streptomyces} PDB: 3gjb_A*
Length = 319
Score = 24.3 bits (52), Expect = 6.9
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 45 LIFHCQLAHGS 55
+IF H S
Sbjct: 232 VIFWSNTMHAS 242
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding
protein complex, transferase metal protein complex,
nucleus; HET: ANP; 2.65A {Homo sapiens}
Length = 305
Score = 24.1 bits (53), Expect = 7.1
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 59 LISGF-----SNVRELYQKIAEC-YEFPAEEVSEDFR 89
+ +G N+ +L++ I + Y P +
Sbjct: 206 ITTGLYPFEGDNIYKLFENIGKGSYAIP-GDCGPPLS 241
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 24.0 bits (53), Expect = 7.1
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 64 SNVRELYQKIAECYEFPAEEVSE 86
++ + + I++ P +V E
Sbjct: 231 KYLKYVVETISQVLGVPEAKVDE 253
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A
{Virgibacillus salexigens}
Length = 310
Score = 24.0 bits (52), Expect = 8.4
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 45 LIFHCQLAHGS 55
+F HGS
Sbjct: 240 TLFESNTMHGS 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.402
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,307,397
Number of extensions: 62824
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 19
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.9 bits)