RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16018
         (89 letters)



>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 260

 Score = 24.1 bits (51), Expect = 3.3
 Identities = 4/23 (17%), Positives = 11/23 (47%)

Query: 64  SNVRELYQKIAECYEFPAEEVSE 86
             ++ + + I++    P  +V E
Sbjct: 223 KYLKYVVETISQVLGVPEAKVDE 245


>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
           {Escherichia coli [TaxId: 562]}
          Length = 265

 Score = 23.5 bits (49), Expect = 4.4
 Identities = 5/23 (21%), Positives = 13/23 (56%)

Query: 64  SNVRELYQKIAECYEFPAEEVSE 86
           + VR++ + +A       EE+++
Sbjct: 222 AMVRDVAEYMAVLKGVAVEELAQ 244


>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
           {Escherichia coli [TaxId: 562]}
          Length = 260

 Score = 23.0 bits (48), Expect = 6.6
 Identities = 4/23 (17%), Positives = 11/23 (47%)

Query: 64  SNVRELYQKIAECYEFPAEEVSE 86
           +++  + Q+IA      A  ++ 
Sbjct: 224 AHLPHILQRIAHWRGEDAAWLAA 246


>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
           {Escherichia coli [TaxId: 562]}
          Length = 259

 Score = 22.7 bits (47), Expect = 8.6
 Identities = 4/23 (17%), Positives = 11/23 (47%)

Query: 64  SNVRELYQKIAECYEFPAEEVSE 86
                ++  + E    PA+E+++
Sbjct: 224 EQAARVFAVLCELRREPADEIAQ 246


>d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 263

 Score = 22.5 bits (46), Expect = 9.9
 Identities = 5/28 (17%), Positives = 16/28 (57%), Gaps = 4/28 (14%)

Query: 27 IYNGTKSPAPVTEDSKPKLIFHCQLAHG 54
          ++N T +   ++++++  +I+     HG
Sbjct: 16 LFNKTLTFQEISQNTREAVIY----IHG 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0411    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 325,114
Number of extensions: 12597
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 7
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)