BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16019
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DXA|D Chain D, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|I Chain I, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|N Chain N, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
Length = 199
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 78 TLGLPHHSVRSLAAVYNKVWCGYK 101
TL LPH ++R A Y VW GY+
Sbjct: 71 TLILPHATLRDTAVYYCIVWGGYQ 94
>pdb|3DX9|A Chain A, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DX9|C Chain C, Crystal Structure Of The Dm1 Tcr At 2.75a
Length = 198
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 78 TLGLPHHSVRSLAAVYNKVWCGYK 101
TL LPH ++R A Y VW GY+
Sbjct: 71 TLILPHATLRDTAVYYCIVWGGYQ 94
>pdb|3BBN|Q Chain Q, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 142
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 45 VQGRVVCALADGSVAI 60
+QGRVVCA +D +VA+
Sbjct: 63 MQGRVVCATSDKTVAV 78
>pdb|3DFI|A Chain A, The Crystal Structure Of Antimicrobial Reagent A40926
Pseudoaglycone Deacetylase Dbv21
Length = 270
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 59 AIFRRGPDGQW 69
AI+RR PDGQW
Sbjct: 98 AIYRRSPDGQW 108
>pdb|3VA6|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
pdb|3VA6|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 75 HTVTLG-LPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLD 113
+++ G ++ + S+ V N +W N + ++D K++D
Sbjct: 549 QSISFGSFSNNEILSMTCVKNSIWVSTTNGLWIIDRKTMD 588
>pdb|3OTT|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
pdb|3OTT|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative One Component System Bt4673 From B.
Thetaiotaomicron
Length = 758
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 75 HTVTLG-LPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLD 113
+++ G ++ + S+ V N +W N + ++D K++D
Sbjct: 549 QSISFGSFSNNEILSMTCVKNSIWVSTTNGLWIIDRKTMD 588
>pdb|4FC4|A Chain A, Fnt Family Ion Channel
pdb|4FC4|B Chain B, Fnt Family Ion Channel
pdb|4FC4|C Chain C, Fnt Family Ion Channel
pdb|4FC4|D Chain D, Fnt Family Ion Channel
pdb|4FC4|E Chain E, Fnt Family Ion Channel
pdb|4FC4|F Chain F, Fnt Family Ion Channel
pdb|4FC4|G Chain G, Fnt Family Ion Channel
pdb|4FC4|H Chain H, Fnt Family Ion Channel
pdb|4FC4|I Chain I, Fnt Family Ion Channel
pdb|4FC4|J Chain J, Fnt Family Ion Channel
Length = 261
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 1 MTSVLPTMWLGSQNGSVFV 19
M ++LP WLG+ GSVFV
Sbjct: 101 MWAILPQTWLGNLVGSVFV 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,920,922
Number of Sequences: 62578
Number of extensions: 141250
Number of successful extensions: 330
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 9
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)