BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16019
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58A65|JIP4_MOUSE C-Jun-amino-terminal kinase-interacting protein 4 OS=Mus musculus
GN=Spag9 PE=1 SV=2
Length = 1321
Score = 185 bits (469), Expect = 8e-47, Method: Composition-based stats.
Identities = 75/114 (65%), Positives = 100/114 (87%)
Query: 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
M+S+LPTMWLG+QNG ++VHS+V+QWR+CLHSI+LKDS+L+IVHV+G V+ ALADG++AI
Sbjct: 965 MSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAI 1024
Query: 61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
F RG DGQWDLS YH + LG PHHS+R + V++KVWCGY+NKI+VV PK++ +
Sbjct: 1025 FHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKI 1078
>sp|O60271|JIP4_HUMAN C-Jun-amino-terminal kinase-interacting protein 4 OS=Homo sapiens
GN=SPAG9 PE=1 SV=4
Length = 1321
Score = 185 bits (469), Expect = 8e-47, Method: Composition-based stats.
Identities = 75/114 (65%), Positives = 100/114 (87%)
Query: 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
M+S+LPTMWLG+QNG ++VHS+V+QWR+CLHSI+LKDS+L+IVHV+G V+ ALADG++AI
Sbjct: 965 MSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAI 1024
Query: 61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
F RG DGQWDLS YH + LG PHHS+R + V++KVWCGY+NKI+VV PK++ +
Sbjct: 1025 FHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKI 1078
>sp|Q9UPT6|JIP3_HUMAN C-Jun-amino-terminal kinase-interacting protein 3 OS=Homo sapiens
GN=MAPK8IP3 PE=1 SV=3
Length = 1336
Score = 184 bits (468), Expect = 1e-46, Method: Composition-based stats.
Identities = 74/113 (65%), Positives = 98/113 (86%)
Query: 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
+S PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct: 965 SSAAPTMWLGAQNGWLYVHSAVANWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 1024
Query: 62 RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
RG DGQWDLS YH + LG PHHS+R +A VY++VWCGYKNK+HV+ PK++ +
Sbjct: 1025 HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVYDRVWCGYKNKVHVIQPKTMQI 1077
>sp|Q9ESN9|JIP3_MOUSE C-Jun-amino-terminal kinase-interacting protein 3 OS=Mus musculus
GN=Mapk8ip3 PE=1 SV=1
Length = 1337
Score = 181 bits (458), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/113 (64%), Positives = 97/113 (85%)
Query: 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
+S PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct: 966 SSAAPTMWLGAQNGWLYVHSAVANWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 1025
Query: 62 RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
RG DGQWDLS YH + LG PHHS+R +A V ++VWCGYKNK+HV+ PK++ +
Sbjct: 1026 HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVNDRVWCGYKNKVHVIQPKTMQI 1078
>sp|Q29EP6|JIP3_DROPS JNK-interacting protein 3 OS=Drosophila pseudoobscura pseudoobscura
GN=syd PE=3 SV=2
Length = 1235
Score = 147 bits (371), Expect = 2e-35, Method: Composition-based stats.
Identities = 62/115 (53%), Positives = 85/115 (73%)
Query: 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
MTSV PTMW+G+Q+G ++VHS V +W CLH + L D+VL IVHV+ RVV ALA+ +A+
Sbjct: 919 MTSVGPTMWMGAQDGWLYVHSGVGRWHECLHRVLLPDAVLAIVHVEARVVVALANAQLAV 978
Query: 61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVI 115
FRR DGQWDL+ YH VTLG +HS+R L ++W ++NKI +VDP SL+++
Sbjct: 979 FRRQTDGQWDLNSYHLVTLGDRNHSIRCLCVAGERIWAAHRNKIFIVDPISLNIV 1033
>sp|Q9GQF1|JIP3_DROME JNK-interacting protein 3 OS=Drosophila melanogaster GN=syd PE=1 SV=1
Length = 1227
Score = 147 bits (371), Expect = 2e-35, Method: Composition-based stats.
Identities = 62/115 (53%), Positives = 86/115 (74%)
Query: 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
M+SV PTMWLG+Q+G ++VHS+V +W CLH + L D+VL IVHV+ RVV ALA+ +A+
Sbjct: 911 MSSVGPTMWLGAQDGWLYVHSSVGRWHECLHRVLLPDAVLAIVHVEARVVVALANAQLAV 970
Query: 61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVI 115
FRR DGQWDL+ YH VTLG +HS+R L ++W ++NKI +VDP SL+++
Sbjct: 971 FRRQTDGQWDLNSYHLVTLGDRNHSIRCLCVAGERIWAAHRNKIFIVDPVSLNIV 1025
>sp|P34609|JIP_CAEEL JNK-interacting protein OS=Caenorhabditis elegans GN=unc-16 PE=1
SV=3
Length = 1157
Score = 122 bits (307), Expect = 5e-28, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 79/116 (68%)
Query: 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
M+ LPT+W+G QN +++HSAV+ W++CL I++ D+VL+IVH + R+ ALA+G++AI
Sbjct: 813 MSGALPTVWMGGQNQYIYIHSAVTAWKQCLRRIKMPDAVLSIVHYKSRIFAALANGTIAI 872
Query: 61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIR 116
F R G+W YH++ +G SVRSL V +W YKN + V+D +SL +++
Sbjct: 873 FHRNKHGEWSDEGYHSLRVGSATSSVRSLCLVSTNIWATYKNCVVVLDAESLQIVK 928
>sp|Q96PE2|ARHGH_HUMAN Rho guanine nucleotide exchange factor 17 OS=Homo sapiens GN=ARHGEF17
PE=1 SV=1
Length = 2063
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD--SVLNIVHVQGRVVCALADGSVAIFRRG 64
++WLG+++G V V+ + R +S++L+ SV I+++ +V +LA+G + +++R
Sbjct: 1740 SVWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQRE 1799
Query: 65 PDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
WD + +VTLG + + +V ++WCG +N++ V+ P +L +
Sbjct: 1800 AGHFWDPQNFKSVTLGTQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQL 1849
>sp|Q80U35|ARHGH_MOUSE Rho guanine nucleotide exchange factor 17 OS=Mus musculus GN=Arhgef17
PE=1 SV=2
Length = 2057
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD--SVLNIVHVQGRVVCALADGSVAIFRRG 64
++WLG+++G V V+ + R +S++L+ SV I+++ +V +LA+G + +++R
Sbjct: 1734 SVWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNKVFVSLANGELVVYQRE 1793
Query: 65 PDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
WD + ++TLG + + +V ++WCG +N++ V+ P +L +
Sbjct: 1794 AGRFWDPQNFKSMTLGSQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQL 1843
>sp|O15013|ARHGA_HUMAN Rho guanine nucleotide exchange factor 10 OS=Homo sapiens GN=ARHGEF10
PE=1 SV=4
Length = 1369
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 3 SVLPTMWLGSQNGSVFVH--SAVSQWRRCLHSIQL-KDSVLNIVHVQGRVVCALADGSVA 59
S +PT+ +G++ GS+ ++ S S+ R H K +V+++ + L +G+VA
Sbjct: 986 SDVPTICVGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTSQSLYAGLVNGAVA 1045
Query: 60 IFRRGPDGQWDLSKYHTVTLG-LPHHSVRSLAAVYNKVWCGYKNKIHVV 107
+ R PDG WD + LG LP VRSL + + +W ++ ++
Sbjct: 1046 SYARAPDGSWDSEPQKVIKLGVLP---VRSLLMMEDTLWAASGGQVFII 1091
>sp|Q5R5M3|ARGAL_PONAB Rho guanine nucleotide exchange factor 10-like protein OS=Pongo
abelii GN=ARHGEF10L PE=2 SV=1
Length = 1233
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQGRVVCALADGSVAI 60
+V PT+ LG Q+GS+ ++ +V +CL S + VL + H ++ L DG++A
Sbjct: 843 TVHPTICLGLQDGSILLYGSVDTGTQCLASCRSPGLQPVLCLRHSPFYLLAGLQDGTLAA 902
Query: 61 FRRGPDG-QWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSL 112
+ R G WDL V L + VR+L ++ + VW ++ V++ +L
Sbjct: 903 YPRTSGGVLWDLES-PPVCLTVGPGPVRTLLSLEDAVWASCGPRVTVLEATTL 954
>sp|Q9HCE6|ARGAL_HUMAN Rho guanine nucleotide exchange factor 10-like protein OS=Homo
sapiens GN=ARHGEF10L PE=1 SV=3
Length = 1279
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQGRVVCALADGSVAI 60
+V PT+ LG Q+GS+ ++S+V +CL S + VL + H ++ L DG++A
Sbjct: 889 TVHPTICLGLQDGSILLYSSVDTGTQCLVSCRSPGLQPVLCLRHSPFHLLAGLQDGTLAA 948
Query: 61 FRRGPDG-QWDLSKYHTVTLGLPHHSVRSLAAVYNKVW--CG 99
+ R G WDL V L + VR+L ++ + VW CG
Sbjct: 949 YPRTSGGVLWDLES-PPVCLTVGPGPVRTLLSLEDAVWASCG 989
>sp|Q29RM4|ARGAL_BOVIN Rho guanine nucleotide exchange factor 10-like protein OS=Bos
taurus GN=ARHGEF10L PE=2 SV=1
Length = 1237
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQGRVVCALADGSVAIF 61
V PT+ LG Q+GS+ ++S+V +CL + + VL + H ++ L DG++A +
Sbjct: 846 VHPTICLGLQDGSILLYSSVDTGTQCLAACRSPGLQPVLCLRHSPFHLLAGLQDGTLAAY 905
Query: 62 RRGPDG-QWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSL 112
R WDL + L + VR+L ++ VW ++ V+D SL
Sbjct: 906 PRTSGSVPWDLES-PPMCLPVGPGPVRALLSLEEAVWASCGPRVTVLDATSL 956
>sp|A2AWP8|ARGAL_MOUSE Rho guanine nucleotide exchange factor 10-like protein OS=Mus
musculus GN=Arhgef10l PE=1 SV=1
Length = 1280
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KDSVLNIVHVQGRVVCALADGSVAI 60
+V PT+ LG Q+GS+ ++ +V +CL + + VL + H ++ L DG++A
Sbjct: 887 TVHPTVCLGLQDGSILLYGSVDTGTQCLATCKSPGPQPVLCLRHSPFYLLAGLQDGTLAA 946
Query: 61 F-RRGPDGQWDL-SKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSL 112
+ R D WDL S +T+G +R+L ++ + W ++ V+D +L
Sbjct: 947 YPRTSGDIPWDLESPPMCITVG--PGPIRTLLSLEDAAWASCGPRVTVLDAATL 998
>sp|Q8C033|ARHGA_MOUSE Rho guanine nucleotide exchange factor 10 OS=Mus musculus GN=Arhgef10
PE=1 SV=2
Length = 1345
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 5 LPTMWLGSQNGSVFVHSAVSQWR--RCLHSIQL-KDSVLNIVHVQGRVVCALADGSVAIF 61
+PT+ LG++ GS+ ++ + + R H K +V+++ + L +GSVA +
Sbjct: 965 VPTICLGTEEGSISIYKSSQGCKKVRLQHFYAPDKSTVMSLACSPQGLYAGLVNGSVASY 1024
Query: 62 RRGPDGQWDLSKYHTVTLG-LPHHSVRSLAAVYNKVW 97
+ PDG W+ + LG LP VRSL V +W
Sbjct: 1025 TKAPDGSWNSEPQQVIKLGVLP---VRSLLLVEGALW 1058
>sp|Q21653|YNG2_CAEEL Uncharacterized protein R02F2.2 OS=Caenorhabditis elegans
GN=R02F2.2/R02F2.3 PE=4 SV=4
Length = 1182
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 7 TMWLGSQNGSVFVHSAVSQWRR--CLHSIQLKDSVLNIVHVQGRVVCALADGS---VAIF 61
T+W+G+ +G VFV ++ + R +L++S+ +I G V+ A + + + +F
Sbjct: 885 TVWIGNDDGEVFVVNSTERVRSRARDRLARLRNSITSICAANGNVLVATSYSNQVQLLLF 944
Query: 62 RRGPDGQWDLSKYHTV 77
R DG WDL TV
Sbjct: 945 RPASDGSWDLENPQTV 960
>sp|Q5XX13|FBW10_HUMAN F-box/WD repeat-containing protein 10 OS=Homo sapiens GN=FBXW10
PE=2 SV=2
Length = 1052
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 11 GSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
GS +G V S V ++ RCL + + VL++ + RV+ A ADG + I+
Sbjct: 590 GSTDGLVMAWSMVGKYERCLMAFKHPKEVLDVSLLFLRVISACADGKIRIY 640
>sp|O95170|CDRT1_HUMAN CMT1A duplicated region transcript 1 protein OS=Homo sapiens
GN=CDRT1 PE=2 SV=3
Length = 752
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 11 GSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
GS +G V S V ++ RCL + + VL++ + RV+ A ADG + I+
Sbjct: 590 GSTDGLVMAWSMVGKYERCLMAFKHPKEVLDVSLLFLRVISACADGKIRIY 640
>sp|Q5SUS0|FBW10_MOUSE F-box/WD repeat-containing protein 10 OS=Mus musculus GN=Fbxw10
PE=2 SV=1
Length = 1030
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 11 GSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
G +G V S V ++ RCL + + VL + + RV+ A DG + I+
Sbjct: 605 GGADGLVMAWSMVGKYERCLMAFKHPKEVLQVSLLYLRVISACGDGKIRIY 655
>sp|O66043|CLS_BACPE Cardiolipin synthase OS=Bacillus pseudofirmus (strain OF4) GN=cls
PE=3 SV=1
Length = 503
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 34 QLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSK 73
Q +++LN ++ + DG V + GPD +W+++K
Sbjct: 301 QTGETILNQTYLSPSLSMTKGDGGVQMIASGPDTRWEVNK 340
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,677,419
Number of Sequences: 539616
Number of extensions: 1683426
Number of successful extensions: 3966
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3944
Number of HSP's gapped (non-prelim): 24
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)