Query psy16019
Match_columns 121
No_of_seqs 105 out of 239
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:50:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3522|consensus 99.6 1.8E-15 4E-20 129.9 3.8 117 2-120 544-663 (925)
2 KOG3522|consensus 99.3 1.4E-11 3E-16 106.4 8.3 114 4-120 634-749 (925)
3 cd00200 WD40 WD40 domain, foun 98.5 1E-05 2.2E-10 57.9 14.8 105 5-119 63-174 (289)
4 cd00200 WD40 WD40 domain, foun 98.5 2.1E-05 4.5E-10 56.2 14.7 108 3-119 19-132 (289)
5 KOG0274|consensus 98.4 5.1E-06 1.1E-10 70.2 12.9 107 3-119 259-368 (537)
6 PTZ00421 coronin; Provisional 98.3 6.5E-05 1.4E-09 62.9 16.2 107 5-119 88-207 (493)
7 KOG0318|consensus 98.2 4E-05 8.8E-10 64.3 12.3 103 2-110 452-560 (603)
8 KOG1036|consensus 98.2 3.1E-05 6.8E-10 61.2 10.9 98 4-111 24-125 (323)
9 PF14783 BBS2_Mid: Ciliary BBS 98.2 9.2E-05 2E-09 50.8 11.8 85 4-102 14-105 (111)
10 KOG0315|consensus 98.2 3E-05 6.5E-10 60.3 10.4 101 5-115 95-202 (311)
11 TIGR03866 PQQ_ABC_repeats PQQ- 98.2 0.00012 2.6E-09 54.4 13.5 107 4-120 167-289 (300)
12 PF13360 PQQ_2: PQQ-like domai 98.1 0.00022 4.7E-09 52.3 13.7 110 4-120 35-150 (238)
13 KOG1036|consensus 98.1 7.4E-05 1.6E-09 59.1 11.6 99 5-114 65-167 (323)
14 PF02239 Cytochrom_D1: Cytochr 98.1 0.00016 3.5E-09 58.4 13.8 102 6-120 6-118 (369)
15 KOG0266|consensus 98.1 0.00017 3.6E-09 59.5 13.9 104 2-114 212-322 (456)
16 PTZ00420 coronin; Provisional 98.1 0.00034 7.5E-09 59.7 15.6 107 5-120 87-207 (568)
17 TIGR03300 assembly_YfgL outer 98.0 0.00022 4.7E-09 56.5 13.2 105 5-119 65-172 (377)
18 TIGR03300 assembly_YfgL outer 98.0 0.00034 7.3E-09 55.4 13.7 106 5-120 241-348 (377)
19 PF00780 CNH: CNH domain; Int 97.9 0.00092 2E-08 50.6 14.4 114 2-118 4-173 (275)
20 PRK11138 outer membrane biogen 97.9 0.00063 1.4E-08 54.6 13.8 106 5-120 256-363 (394)
21 KOG0296|consensus 97.9 0.00014 3E-09 58.8 9.7 97 2-109 295-397 (399)
22 TIGR03866 PQQ_ABC_repeats PQQ- 97.9 0.0014 3.1E-08 48.6 14.3 101 8-119 4-112 (300)
23 KOG0316|consensus 97.8 0.00012 2.6E-09 56.7 7.7 103 6-117 114-220 (307)
24 PLN00181 protein SPA1-RELATED; 97.8 0.0014 3.1E-08 57.2 15.2 97 5-111 588-691 (793)
25 KOG2077|consensus 97.8 6E-06 1.3E-10 70.0 0.0 44 1-44 789-832 (832)
26 KOG0279|consensus 97.7 0.00057 1.2E-08 53.7 10.9 115 1-119 113-271 (315)
27 PF05096 Glu_cyclase_2: Glutam 97.7 0.0018 3.9E-08 50.5 13.1 109 5-120 99-213 (264)
28 PF13360 PQQ_2: PQQ-like domai 97.7 0.0037 8.1E-08 45.7 14.2 100 5-115 122-235 (238)
29 PRK11138 outer membrane biogen 97.7 0.0013 2.9E-08 52.7 12.3 106 4-119 68-187 (394)
30 KOG0274|consensus 97.6 0.00054 1.2E-08 58.1 9.8 108 3-120 339-451 (537)
31 KOG1539|consensus 97.6 0.0013 2.9E-08 57.8 12.1 106 3-118 170-283 (910)
32 KOG0647|consensus 97.6 0.0012 2.5E-08 52.6 10.6 106 6-119 41-154 (347)
33 PLN00181 protein SPA1-RELATED; 97.6 0.0032 6.9E-08 55.0 14.4 98 5-113 545-651 (793)
34 KOG0646|consensus 97.6 0.0016 3.5E-08 54.0 11.5 103 4-115 134-252 (476)
35 TIGR02658 TTQ_MADH_Hv methylam 97.5 0.0056 1.2E-07 49.5 14.2 103 4-118 205-338 (352)
36 KOG0294|consensus 97.5 0.0014 3E-08 52.4 10.2 100 5-113 53-160 (362)
37 PF03178 CPSF_A: CPSF A subuni 97.5 0.0029 6.2E-08 49.4 12.0 95 5-107 42-154 (321)
38 PF14779 BBS1: Ciliary BBSome 97.5 0.00065 1.4E-08 52.8 8.1 58 4-63 194-257 (257)
39 KOG0291|consensus 97.5 0.0038 8.2E-08 54.7 13.1 106 2-117 359-473 (893)
40 KOG1446|consensus 97.5 0.0067 1.5E-07 48.1 13.5 114 1-120 108-227 (311)
41 KOG0273|consensus 97.4 0.005 1.1E-07 51.4 12.4 111 6-118 323-490 (524)
42 KOG0275|consensus 97.3 0.0014 3E-08 53.0 8.1 104 8-119 278-431 (508)
43 KOG0291|consensus 97.3 0.0063 1.4E-07 53.3 12.0 119 1-120 486-622 (893)
44 KOG0279|consensus 97.2 0.0091 2E-07 47.1 11.2 92 6-107 205-310 (315)
45 KOG4547|consensus 97.2 0.0091 2E-07 50.6 11.9 107 1-119 66-181 (541)
46 KOG1539|consensus 97.2 0.0013 2.9E-08 57.8 7.0 105 2-119 457-573 (910)
47 KOG0269|consensus 97.2 0.0026 5.6E-08 55.7 8.6 106 3-118 144-258 (839)
48 KOG0310|consensus 97.2 0.012 2.6E-07 49.1 12.1 104 7-119 168-277 (487)
49 PTZ00420 coronin; Provisional 97.1 0.026 5.6E-07 48.4 14.5 105 11-118 50-164 (568)
50 PTZ00421 coronin; Provisional 97.1 0.025 5.4E-07 47.5 14.2 99 5-113 138-248 (493)
51 PF03178 CPSF_A: CPSF A subuni 97.1 0.0077 1.7E-07 47.0 10.6 99 15-116 2-122 (321)
52 KOG0315|consensus 97.1 0.024 5.1E-07 44.4 12.5 113 3-119 134-255 (311)
53 KOG0649|consensus 97.1 0.017 3.7E-07 45.2 11.7 107 4-120 125-245 (325)
54 KOG0646|consensus 97.1 0.013 2.9E-07 48.6 11.5 112 5-118 93-214 (476)
55 KOG2321|consensus 97.1 0.003 6.5E-08 54.0 7.8 61 1-63 183-257 (703)
56 KOG0310|consensus 97.0 0.0089 1.9E-07 49.9 10.3 102 3-113 78-187 (487)
57 KOG0266|consensus 97.0 0.035 7.6E-07 45.8 13.9 105 4-118 257-372 (456)
58 KOG0281|consensus 97.0 0.00076 1.6E-08 54.8 3.9 110 7-119 209-357 (499)
59 KOG0268|consensus 97.0 0.0062 1.3E-07 49.6 8.8 110 6-119 80-227 (433)
60 KOG3881|consensus 97.0 0.0095 2.1E-07 48.7 9.8 103 5-116 216-326 (412)
61 KOG0283|consensus 97.0 0.023 4.9E-07 49.7 12.5 107 5-121 380-492 (712)
62 KOG0306|consensus 97.0 0.0097 2.1E-07 52.2 10.2 108 3-118 464-588 (888)
63 KOG2055|consensus 97.0 0.011 2.4E-07 49.3 10.2 100 2-111 312-418 (514)
64 KOG1188|consensus 96.9 0.0053 1.2E-07 49.5 8.0 110 5-119 129-251 (376)
65 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 0.025 5.3E-07 47.8 12.1 109 5-119 69-198 (527)
66 KOG0281|consensus 96.9 0.003 6.5E-08 51.4 6.2 111 7-119 249-397 (499)
67 KOG0278|consensus 96.9 0.014 3E-07 45.8 9.7 101 6-115 156-259 (334)
68 KOG2106|consensus 96.9 0.015 3.3E-07 49.1 10.5 97 6-114 381-483 (626)
69 KOG2110|consensus 96.9 0.019 4.2E-07 46.6 10.8 95 15-118 106-212 (391)
70 TIGR02658 TTQ_MADH_Hv methylam 96.9 0.04 8.7E-07 44.6 12.7 101 2-109 113-222 (352)
71 KOG2111|consensus 96.9 0.057 1.2E-06 43.3 13.2 99 15-118 75-220 (346)
72 KOG0647|consensus 96.8 0.014 3E-07 46.6 9.5 102 7-118 129-236 (347)
73 KOG0639|consensus 96.8 0.0034 7.4E-08 53.1 6.0 104 2-113 474-584 (705)
74 KOG1963|consensus 96.8 0.021 4.5E-07 50.4 10.8 108 2-118 214-330 (792)
75 KOG0299|consensus 96.8 0.025 5.4E-07 47.1 10.7 114 2-118 211-364 (479)
76 KOG1273|consensus 96.7 0.039 8.5E-07 44.5 11.4 108 3-120 75-193 (405)
77 cd00216 PQQ_DH Dehydrogenases 96.7 0.023 4.9E-07 47.3 10.5 107 5-119 61-192 (488)
78 cd00216 PQQ_DH Dehydrogenases 96.7 0.03 6.4E-07 46.6 11.0 109 7-120 303-434 (488)
79 KOG2048|consensus 96.7 0.012 2.5E-07 50.9 8.5 98 6-109 216-317 (691)
80 KOG2055|consensus 96.7 0.06 1.3E-06 45.0 12.3 108 5-120 225-384 (514)
81 KOG0649|consensus 96.6 0.041 9E-07 43.1 10.6 112 5-119 22-153 (325)
82 KOG0308|consensus 96.6 0.0093 2E-07 51.5 7.6 91 2-102 222-318 (735)
83 KOG0278|consensus 96.6 0.0063 1.4E-07 47.7 6.0 107 4-120 111-223 (334)
84 KOG0296|consensus 96.6 0.061 1.3E-06 43.8 11.6 105 5-118 160-271 (399)
85 PRK11028 6-phosphogluconolacto 96.6 0.21 4.6E-06 38.7 14.5 105 3-110 89-205 (330)
86 PF14781 BBS2_N: Ciliary BBSom 96.6 0.09 2E-06 37.3 11.1 104 2-114 7-129 (136)
87 PF02239 Cytochrom_D1: Cytochr 96.6 0.014 3E-07 47.2 8.0 85 28-120 260-357 (369)
88 PF08596 Lgl_C: Lethal giant l 96.6 0.042 9.2E-07 45.0 10.9 111 3-117 95-250 (395)
89 KOG0285|consensus 96.6 0.018 4E-07 47.0 8.5 100 6-115 248-353 (460)
90 KOG0277|consensus 96.5 0.0099 2.1E-07 46.6 6.6 49 14-62 37-89 (311)
91 KOG0276|consensus 96.5 0.014 3.1E-07 50.5 7.9 75 36-120 13-95 (794)
92 KOG1407|consensus 96.5 0.072 1.6E-06 41.9 11.1 102 9-120 163-271 (313)
93 KOG1274|consensus 96.5 0.045 9.8E-07 48.8 10.9 107 4-119 24-135 (933)
94 PRK11028 6-phosphogluconolacto 96.5 0.19 4.2E-06 38.9 13.6 106 2-111 43-157 (330)
95 KOG0303|consensus 96.4 0.026 5.7E-07 46.5 8.8 98 7-117 96-210 (472)
96 KOG0305|consensus 96.4 0.023 4.9E-07 47.9 8.7 106 4-119 228-340 (484)
97 PF05096 Glu_cyclase_2: Glutam 96.4 0.21 4.5E-06 39.1 13.4 106 5-121 55-168 (264)
98 KOG0306|consensus 96.4 0.054 1.2E-06 47.7 10.9 102 5-115 77-184 (888)
99 KOG1273|consensus 96.4 0.022 4.7E-07 45.9 7.8 79 30-119 18-104 (405)
100 KOG0318|consensus 96.3 0.096 2.1E-06 44.5 11.4 104 8-119 74-229 (603)
101 KOG2048|consensus 96.3 0.18 3.9E-06 43.8 13.2 104 4-116 36-146 (691)
102 KOG1274|consensus 96.2 0.082 1.8E-06 47.2 11.2 106 6-118 67-176 (933)
103 KOG0283|consensus 96.2 0.042 9.1E-07 48.1 9.3 103 7-119 424-541 (712)
104 KOG0282|consensus 96.2 0.014 3.1E-07 48.7 6.2 98 4-111 311-416 (503)
105 PF10282 Lactonase: Lactonase, 96.2 0.42 9.2E-06 37.8 14.3 110 3-117 201-331 (345)
106 KOG0289|consensus 96.1 0.083 1.8E-06 44.0 10.1 95 7-110 361-460 (506)
107 TIGR03074 PQQ_membr_DH membran 96.1 0.29 6.4E-06 43.4 14.0 113 5-119 194-353 (764)
108 PF08450 SGL: SMP-30/Gluconola 96.1 0.22 4.7E-06 37.1 11.6 111 5-120 96-222 (246)
109 KOG0264|consensus 96.0 0.09 1.9E-06 43.5 9.9 94 10-111 245-348 (422)
110 KOG0273|consensus 96.0 0.17 3.7E-06 42.5 11.5 58 4-64 246-306 (524)
111 KOG4640|consensus 95.9 0.029 6.2E-07 48.4 6.9 58 5-65 32-93 (665)
112 KOG3621|consensus 95.9 0.04 8.7E-07 48.0 7.7 107 2-111 42-155 (726)
113 PF13570 PQQ_3: PQQ-like domai 95.8 0.028 6E-07 30.9 4.5 36 28-63 2-38 (40)
114 KOG0294|consensus 95.8 0.093 2E-06 42.2 9.0 83 4-92 218-306 (362)
115 COG1520 FOG: WD40-like repeat 95.8 0.34 7.5E-06 38.5 12.4 108 5-118 111-225 (370)
116 PF00400 WD40: WD domain, G-be 95.8 0.081 1.8E-06 28.1 6.3 35 28-62 2-39 (39)
117 KOG2066|consensus 95.7 0.19 4.1E-06 44.6 11.0 106 5-118 83-195 (846)
118 TIGR02276 beta_rpt_yvtn 40-res 95.7 0.042 9.1E-07 29.8 4.8 28 93-120 3-32 (42)
119 KOG0271|consensus 95.7 0.041 8.9E-07 45.3 6.5 57 7-65 219-277 (480)
120 KOG2110|consensus 95.6 0.32 6.9E-06 39.8 11.3 94 16-120 69-171 (391)
121 KOG0772|consensus 95.6 0.047 1E-06 46.4 6.8 60 2-63 418-486 (641)
122 KOG2096|consensus 95.6 0.035 7.7E-07 44.8 5.8 82 37-119 279-369 (420)
123 KOG2114|consensus 95.6 0.11 2.5E-06 46.2 9.3 100 2-106 32-150 (933)
124 KOG0265|consensus 95.4 0.18 3.9E-06 40.3 9.1 97 5-111 145-247 (338)
125 KOG0276|consensus 95.4 0.099 2.2E-06 45.4 8.2 79 3-101 237-318 (794)
126 KOG1408|consensus 95.4 0.13 2.8E-06 45.5 9.0 106 8-119 519-635 (1080)
127 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.3 0.54 1.2E-05 39.8 12.4 113 5-119 120-288 (527)
128 KOG0271|consensus 95.3 0.17 3.6E-06 41.8 8.8 107 3-118 167-284 (480)
129 PF10282 Lactonase: Lactonase, 95.2 1.2 2.5E-05 35.3 13.4 106 7-117 1-125 (345)
130 KOG1645|consensus 95.1 0.11 2.4E-06 43.0 7.4 54 7-62 208-264 (463)
131 KOG0293|consensus 95.1 0.27 5.8E-06 41.0 9.4 106 1-118 362-478 (519)
132 KOG1446|consensus 95.0 0.71 1.5E-05 36.8 11.4 85 2-96 196-288 (311)
133 KOG0301|consensus 95.0 0.17 3.7E-06 44.2 8.3 58 4-65 230-289 (745)
134 KOG4649|consensus 94.9 0.64 1.4E-05 37.0 10.7 109 1-111 101-227 (354)
135 COG3823 Glutamine cyclotransfe 94.9 0.33 7.2E-06 37.3 8.9 109 5-120 100-214 (262)
136 KOG0308|consensus 94.9 0.04 8.8E-07 47.7 4.4 101 7-112 39-150 (735)
137 KOG0640|consensus 94.8 0.11 2.5E-06 41.9 6.6 105 2-115 121-251 (430)
138 KOG0305|consensus 94.8 0.64 1.4E-05 39.3 11.2 101 5-113 188-291 (484)
139 PF11768 DUF3312: Protein of u 94.6 0.41 8.8E-06 40.9 9.8 60 2-64 268-329 (545)
140 KOG0319|consensus 94.6 0.27 5.8E-06 43.2 8.8 108 1-118 200-319 (775)
141 PF00780 CNH: CNH domain; Int 94.6 1.4 3.1E-05 33.0 13.2 58 5-64 105-165 (275)
142 KOG2111|consensus 94.6 0.45 9.8E-06 38.3 9.3 108 4-121 16-133 (346)
143 KOG0284|consensus 94.5 0.078 1.7E-06 43.8 5.0 107 3-118 106-218 (464)
144 COG1520 FOG: WD40-like repeat 94.4 2 4.2E-05 34.2 12.9 106 5-118 68-179 (370)
145 KOG4378|consensus 94.4 0.45 9.8E-06 40.6 9.4 101 8-118 136-247 (673)
146 KOG0270|consensus 94.3 0.41 8.9E-06 39.9 8.8 99 6-115 343-454 (463)
147 KOG0289|consensus 94.3 1.4 3E-05 37.0 11.8 105 8-120 318-429 (506)
148 PF05694 SBP56: 56kDa selenium 94.3 0.51 1.1E-05 39.5 9.4 93 15-111 222-343 (461)
149 KOG0286|consensus 94.2 2.4 5.1E-05 34.1 13.3 114 3-119 65-183 (343)
150 KOG0643|consensus 94.1 0.84 1.8E-05 36.2 9.8 98 14-119 119-229 (327)
151 KOG4649|consensus 94.1 1.1 2.3E-05 35.7 10.3 104 6-117 24-130 (354)
152 KOG0319|consensus 94.0 0.35 7.5E-06 42.5 8.2 106 6-119 118-231 (775)
153 KOG0643|consensus 94.0 2.5 5.5E-05 33.6 12.7 107 7-116 66-184 (327)
154 KOG0316|consensus 93.9 0.51 1.1E-05 36.9 8.2 108 6-120 156-267 (307)
155 COG3391 Uncharacterized conser 93.8 2.9 6.3E-05 33.7 13.3 101 3-116 83-196 (381)
156 KOG0321|consensus 93.8 1 2.2E-05 39.3 10.5 105 3-115 155-306 (720)
157 KOG2096|consensus 93.8 2.3 5E-05 34.6 11.8 113 2-118 95-224 (420)
158 KOG2106|consensus 93.7 0.98 2.1E-05 38.6 10.1 92 5-106 257-353 (626)
159 KOG1272|consensus 93.6 0.24 5.2E-06 41.7 6.3 91 6-107 264-359 (545)
160 KOG0302|consensus 93.6 0.32 6.9E-06 40.1 6.8 59 6-64 315-378 (440)
161 KOG0295|consensus 93.4 1.3 2.9E-05 36.3 10.1 101 10-120 252-374 (406)
162 PF12894 Apc4_WD40: Anaphase-p 93.4 0.42 9.1E-06 27.6 5.4 36 34-69 9-46 (47)
163 KOG1587|consensus 93.2 0.71 1.5E-05 39.7 8.8 50 15-65 222-274 (555)
164 KOG0322|consensus 93.2 0.92 2E-05 36.0 8.6 108 5-116 165-287 (323)
165 KOG0264|consensus 93.2 0.79 1.7E-05 38.0 8.6 105 5-114 190-307 (422)
166 PF08450 SGL: SMP-30/Gluconola 93.1 2.7 5.9E-05 31.1 12.9 103 4-117 11-129 (246)
167 KOG0642|consensus 93.1 0.5 1.1E-05 40.4 7.5 107 4-111 305-427 (577)
168 KOG0282|consensus 93.0 0.43 9.3E-06 40.2 6.9 102 6-116 228-336 (503)
169 KOG1523|consensus 93.0 1.6 3.5E-05 35.3 9.8 101 4-108 21-127 (361)
170 KOG0772|consensus 92.9 0.59 1.3E-05 40.0 7.6 109 4-120 328-455 (641)
171 KOG2445|consensus 92.9 1.4 3E-05 35.5 9.4 99 9-111 130-257 (361)
172 COG3386 Gluconolactonase [Carb 92.9 4 8.6E-05 32.4 12.6 112 5-120 121-252 (307)
173 KOG4190|consensus 92.9 0.21 4.6E-06 43.3 5.0 105 9-117 798-913 (1034)
174 PF04762 IKI3: IKI3 family; I 92.9 4.3 9.3E-05 37.0 13.5 78 37-119 76-158 (928)
175 KOG0307|consensus 92.8 0.25 5.5E-06 45.0 5.7 106 6-120 175-294 (1049)
176 KOG1332|consensus 92.8 0.44 9.5E-06 37.4 6.3 62 11-73 76-143 (299)
177 KOG0267|consensus 92.8 0.31 6.8E-06 42.9 6.0 107 3-119 80-193 (825)
178 KOG0302|consensus 92.7 1.8 3.9E-05 35.7 9.9 92 9-110 274-378 (440)
179 KOG1517|consensus 92.6 2.3 5E-05 39.4 11.2 98 7-112 1179-1289(1387)
180 KOG2695|consensus 92.6 0.27 5.9E-06 40.1 5.1 61 3-63 262-328 (425)
181 KOG0269|consensus 92.4 0.56 1.2E-05 41.6 7.1 57 4-61 188-247 (839)
182 KOG0321|consensus 92.4 0.42 9E-06 41.6 6.2 96 6-110 65-175 (720)
183 KOG0265|consensus 92.3 3.3 7.1E-05 33.3 10.7 106 3-117 57-170 (338)
184 KOG0275|consensus 92.3 5.4 0.00012 32.7 12.0 109 2-120 357-477 (508)
185 KOG0307|consensus 92.2 0.14 3.1E-06 46.5 3.3 99 6-112 81-194 (1049)
186 KOG0286|consensus 92.2 5.2 0.00011 32.1 12.2 105 4-118 198-311 (343)
187 KOG0640|consensus 92.1 0.51 1.1E-05 38.2 6.1 104 7-118 186-299 (430)
188 KOG0973|consensus 92.1 0.5 1.1E-05 42.8 6.5 57 7-65 296-356 (942)
189 KOG0263|consensus 92.1 0.45 9.9E-06 41.7 6.1 96 11-117 511-614 (707)
190 KOG0263|consensus 91.8 2.1 4.6E-05 37.7 9.9 96 5-111 547-650 (707)
191 KOG0973|consensus 91.8 3.5 7.5E-05 37.6 11.4 109 2-119 78-210 (942)
192 KOG1188|consensus 91.7 1.7 3.7E-05 35.4 8.6 99 5-113 40-154 (376)
193 COG4946 Uncharacterized protei 91.7 7.5 0.00016 33.4 12.6 103 4-116 370-483 (668)
194 KOG1587|consensus 91.5 2.5 5.5E-05 36.3 10.0 58 5-62 255-321 (555)
195 KOG1407|consensus 91.5 3 6.6E-05 33.0 9.5 106 2-118 115-227 (313)
196 KOG4378|consensus 91.3 2.4 5.2E-05 36.4 9.4 72 13-93 229-303 (673)
197 smart00320 WD40 WD40 repeats. 91.3 0.88 1.9E-05 21.6 4.8 33 29-61 4-39 (40)
198 KOG1332|consensus 91.3 1.5 3.2E-05 34.5 7.6 65 4-70 222-292 (299)
199 KOG0288|consensus 91.2 0.96 2.1E-05 37.6 6.9 100 8-120 276-381 (459)
200 KOG4714|consensus 90.9 1.4 3.1E-05 34.9 7.2 104 4-108 191-316 (319)
201 PF01011 PQQ: PQQ enzyme repea 90.9 0.74 1.6E-05 24.9 4.2 30 6-37 1-30 (38)
202 KOG0295|consensus 90.7 7.7 0.00017 32.0 11.4 86 6-101 305-394 (406)
203 KOG0771|consensus 90.6 4.4 9.4E-05 33.5 10.1 111 6-117 157-318 (398)
204 PF11768 DUF3312: Protein of u 90.6 5.4 0.00012 34.3 11.0 90 18-116 239-335 (545)
205 COG3292 Predicted periplasmic 90.6 0.89 1.9E-05 39.4 6.3 97 5-111 386-492 (671)
206 PF08662 eIF2A: Eukaryotic tra 90.6 5.3 0.00011 29.2 11.8 93 16-119 38-142 (194)
207 PF04053 Coatomer_WDAD: Coatom 90.5 4.4 9.6E-05 33.8 10.4 68 30-109 102-172 (443)
208 COG3292 Predicted periplasmic 90.5 2.3 4.9E-05 37.0 8.6 108 3-118 214-325 (671)
209 KOG0270|consensus 90.4 7.7 0.00017 32.6 11.4 97 6-109 300-403 (463)
210 KOG0292|consensus 90.4 7.9 0.00017 35.5 12.1 59 3-63 260-320 (1202)
211 KOG2445|consensus 90.3 8.1 0.00018 31.3 11.1 58 6-64 185-256 (361)
212 KOG2114|consensus 90.3 9.9 0.00021 34.5 12.6 108 4-120 136-253 (933)
213 KOG0272|consensus 90.2 5 0.00011 33.5 10.1 111 4-117 186-340 (459)
214 KOG0285|consensus 90.2 7.1 0.00015 32.3 10.8 106 2-117 202-314 (460)
215 KOG1517|consensus 90.1 5.7 0.00012 37.0 11.1 99 5-111 1221-1334(1387)
216 KOG1063|consensus 90.1 3 6.5E-05 36.8 9.2 99 7-109 71-173 (764)
217 PF10433 MMS1_N: Mono-function 90.1 9.9 0.00021 31.6 12.7 97 4-107 221-339 (504)
218 KOG0650|consensus 89.9 0.39 8.4E-06 41.7 3.6 74 3-79 617-694 (733)
219 KOG0288|consensus 89.7 9.6 0.00021 31.9 11.4 103 7-119 314-426 (459)
220 KOG1310|consensus 89.7 2.8 6.2E-05 36.4 8.5 105 3-110 60-178 (758)
221 PF14655 RAB3GAP2_N: Rab3 GTPa 89.5 7.1 0.00015 32.4 10.7 105 1-113 9-149 (415)
222 KOG1240|consensus 89.4 4.4 9.5E-05 38.1 10.0 103 7-119 1165-1282(1431)
223 KOG0301|consensus 89.3 6 0.00013 35.0 10.4 90 9-110 194-288 (745)
224 PF08596 Lgl_C: Lethal giant l 89.3 4.6 9.9E-05 33.2 9.4 79 39-117 4-122 (395)
225 PF13570 PQQ_3: PQQ-like domai 89.2 0.65 1.4E-05 25.2 3.1 20 4-23 20-39 (40)
226 KOG0639|consensus 89.0 0.79 1.7E-05 39.3 4.8 60 3-64 561-622 (705)
227 smart00564 PQQ beta-propeller 88.6 1.1 2.5E-05 22.8 3.7 23 43-65 3-25 (33)
228 KOG3611|consensus 88.3 1.9 4.1E-05 38.3 6.9 56 5-60 425-489 (737)
229 KOG2444|consensus 88.2 1.3 2.9E-05 34.1 5.2 63 44-114 68-136 (238)
230 smart00564 PQQ beta-propeller 88.2 1.2 2.7E-05 22.7 3.7 26 5-32 6-31 (33)
231 PLN02919 haloacid dehalogenase 88.2 22 0.00047 32.9 13.8 66 41-115 808-893 (1057)
232 KOG1538|consensus 88.0 2.4 5.2E-05 37.7 7.1 61 4-67 23-86 (1081)
233 KOG0284|consensus 87.6 1.5 3.2E-05 36.5 5.4 102 4-116 149-258 (464)
234 KOG0290|consensus 87.6 6.9 0.00015 31.6 9.0 95 9-111 165-275 (364)
235 KOG2079|consensus 87.2 1.6 3.5E-05 40.2 5.8 85 7-101 101-195 (1206)
236 KOG0299|consensus 86.8 18 0.00039 30.6 11.4 58 3-62 296-354 (479)
237 PF06433 Me-amine-dh_H: Methyl 86.3 12 0.00026 30.5 9.9 93 16-113 119-216 (342)
238 TIGR03074 PQQ_membr_DH membran 85.8 3.6 7.9E-05 36.7 7.3 53 2-56 688-745 (764)
239 PF07569 Hira: TUP1-like enhan 85.7 4.1 8.9E-05 30.6 6.7 60 3-64 20-95 (219)
240 KOG0300|consensus 85.7 16 0.00034 30.0 10.2 98 4-113 325-431 (481)
241 KOG1645|consensus 85.6 3.7 8.1E-05 34.2 6.7 94 5-102 248-351 (463)
242 PF10395 Utp8: Utp8 family; I 85.6 25 0.00055 31.1 15.1 89 32-120 125-269 (670)
243 PF12234 Rav1p_C: RAVE protein 85.0 26 0.00057 30.8 13.4 92 16-109 52-155 (631)
244 KOG2063|consensus 85.0 0.35 7.7E-06 43.5 0.7 79 34-114 13-100 (877)
245 PF12894 Apc4_WD40: Anaphase-p 84.7 2.1 4.5E-05 24.7 3.7 23 2-24 20-42 (47)
246 COG2706 3-carboxymuconate cycl 84.7 13 0.00028 30.3 9.3 106 7-116 4-126 (346)
247 KOG1408|consensus 84.4 8.7 0.00019 34.6 8.8 107 13-119 344-498 (1080)
248 PF14870 PSII_BNR: Photosynthe 84.3 4.3 9.3E-05 32.3 6.5 66 4-70 196-266 (302)
249 COG2319 FOG: WD40 repeat [Gene 84.3 14 0.0003 27.0 12.4 99 6-114 168-275 (466)
250 KOG3621|consensus 84.3 1.7 3.7E-05 38.3 4.4 62 4-65 87-155 (726)
251 PF06433 Me-amine-dh_H: Methyl 84.1 21 0.00046 29.0 12.7 103 6-119 196-329 (342)
252 PF14761 HPS3_N: Hermansky-Pud 83.8 17 0.00037 27.7 11.5 105 4-113 27-166 (215)
253 PF04841 Vps16_N: Vps16, N-ter 83.6 12 0.00027 30.6 9.1 44 16-62 62-107 (410)
254 PF14727 PHTB1_N: PTHB1 N-term 83.3 10 0.00022 31.5 8.5 62 3-64 35-105 (418)
255 KOG1963|consensus 83.3 20 0.00042 32.3 10.5 91 13-107 179-277 (792)
256 PF01011 PQQ: PQQ enzyme repea 83.2 4.6 9.9E-05 21.7 4.5 27 94-120 1-28 (38)
257 KOG3881|consensus 83.1 14 0.00029 30.7 8.9 99 11-117 167-284 (412)
258 KOG1524|consensus 83.0 3.1 6.6E-05 36.1 5.3 57 5-64 75-134 (737)
259 KOG0313|consensus 82.8 21 0.00046 29.6 9.9 112 7-118 161-297 (423)
260 KOG0272|consensus 82.6 7.2 0.00016 32.6 7.2 59 2-62 354-416 (459)
261 PF12768 Rax2: Cortical protei 82.5 20 0.00042 28.2 9.4 89 13-111 14-124 (281)
262 PF08309 LVIVD: LVIVD repeat; 82.1 6.4 0.00014 22.1 4.9 24 38-61 3-26 (42)
263 PRK02888 nitrous-oxide reducta 82.0 25 0.00054 30.9 10.6 36 77-113 317-354 (635)
264 KOG1897|consensus 82.0 24 0.00052 32.7 10.7 92 7-107 789-895 (1096)
265 PF08553 VID27: VID27 cytoplas 81.8 14 0.0003 33.4 9.2 97 6-110 543-647 (794)
266 KOG1445|consensus 81.2 8.6 0.00019 34.2 7.5 58 7-64 642-708 (1012)
267 KOG2444|consensus 81.1 9.9 0.00021 29.4 7.1 80 4-92 69-154 (238)
268 KOG0650|consensus 81.0 6.9 0.00015 34.3 6.8 90 8-110 539-637 (733)
269 PF14727 PHTB1_N: PTHB1 N-term 80.6 32 0.00069 28.6 12.4 111 5-119 145-280 (418)
270 PF14779 BBS1: Ciliary BBSome 80.4 18 0.00039 28.3 8.4 62 35-107 175-255 (257)
271 KOG0645|consensus 80.4 28 0.0006 27.8 11.9 99 7-110 29-135 (312)
272 KOG1063|consensus 79.7 5.6 0.00012 35.2 5.9 57 8-64 633-699 (764)
273 PF07494 Reg_prop: Two compone 79.6 3.4 7.4E-05 20.2 2.9 21 82-102 3-24 (24)
274 smart00036 CNH Domain found in 79.2 16 0.00034 28.6 8.0 57 5-63 13-72 (302)
275 KOG1034|consensus 79.0 15 0.00033 30.0 7.8 101 4-114 104-215 (385)
276 PF04762 IKI3: IKI3 family; I 78.9 21 0.00045 32.6 9.5 60 3-64 85-150 (928)
277 KOG1445|consensus 78.5 6.2 0.00013 35.0 5.8 104 13-118 601-716 (1012)
278 KOG0280|consensus 78.5 9.6 0.00021 30.7 6.4 56 6-62 179-239 (339)
279 KOG0303|consensus 77.9 26 0.00056 29.4 8.9 100 4-113 143-252 (472)
280 KOG4328|consensus 77.8 34 0.00073 29.1 9.7 104 3-110 289-399 (498)
281 PF14783 BBS2_Mid: Ciliary BBS 77.8 14 0.0003 25.3 6.3 51 6-60 54-110 (111)
282 PF14298 DUF4374: Domain of un 77.0 36 0.00077 28.6 9.7 30 92-121 400-435 (435)
283 PF09826 Beta_propel: Beta pro 76.3 48 0.001 28.3 11.0 97 16-113 403-521 (521)
284 KOG0313|consensus 76.0 45 0.00096 27.8 12.3 103 5-109 271-406 (423)
285 KOG4547|consensus 76.0 51 0.0011 28.5 12.3 113 1-120 1-142 (541)
286 KOG1920|consensus 75.4 50 0.0011 31.3 10.8 71 37-115 69-143 (1265)
287 KOG0267|consensus 74.7 5.8 0.00013 35.3 4.7 91 4-104 165-261 (825)
288 KOG1898|consensus 74.4 49 0.0011 31.0 10.4 96 3-107 943-1045(1205)
289 KOG4640|consensus 74.0 11 0.00025 33.0 6.2 77 33-117 17-99 (665)
290 KOG0277|consensus 73.7 44 0.00095 26.6 10.3 98 7-114 119-225 (311)
291 KOG2919|consensus 73.7 37 0.0008 27.9 8.7 112 1-114 116-242 (406)
292 KOG3914|consensus 73.6 24 0.00052 29.2 7.7 106 4-116 162-283 (390)
293 PRK13684 Ycf48-like protein; P 73.4 16 0.00035 29.0 6.7 58 5-63 270-330 (334)
294 COG5276 Uncharacterized conser 73.1 35 0.00075 27.8 8.3 76 30-110 80-156 (370)
295 KOG0322|consensus 72.6 4.8 0.0001 32.0 3.4 58 4-61 24-82 (323)
296 COG3386 Gluconolactonase [Carb 72.2 13 0.00029 29.4 5.9 51 5-58 223-279 (307)
297 KOG1912|consensus 72.1 5.7 0.00012 35.9 4.0 48 3-52 435-483 (1062)
298 PF12341 DUF3639: Protein of u 71.8 11 0.00024 19.3 3.6 24 38-61 3-26 (27)
299 PF09910 DUF2139: Uncharacteri 71.6 53 0.0011 26.6 9.7 50 15-64 78-137 (339)
300 PHA02713 hypothetical protein; 71.5 45 0.00098 28.4 9.3 24 88-111 458-489 (557)
301 KOG0280|consensus 71.3 53 0.0012 26.5 9.2 99 4-112 132-243 (339)
302 PHA03098 kelch-like protein; P 70.9 60 0.0013 27.0 11.3 93 16-114 312-418 (534)
303 KOG4499|consensus 70.7 45 0.00098 26.4 8.3 80 41-120 133-251 (310)
304 KOG4227|consensus 70.6 48 0.001 28.0 8.8 97 8-112 71-181 (609)
305 PF14655 RAB3GAP2_N: Rab3 GTPa 70.6 13 0.00029 30.8 5.8 54 6-62 80-144 (415)
306 KOG1275|consensus 70.2 57 0.0012 30.3 9.8 97 6-113 149-257 (1118)
307 KOG1409|consensus 69.6 19 0.00042 29.6 6.3 61 3-65 34-99 (404)
308 PF07569 Hira: TUP1-like enhan 69.5 45 0.00097 25.0 9.3 35 29-63 5-39 (219)
309 KOG2066|consensus 69.1 24 0.00051 31.9 7.1 52 6-64 50-101 (846)
310 KOG2919|consensus 68.9 44 0.00094 27.5 8.1 109 2-112 58-190 (406)
311 KOG2139|consensus 68.7 68 0.0015 26.7 9.2 103 8-114 113-230 (445)
312 KOG2079|consensus 68.6 14 0.00031 34.4 5.8 79 35-119 88-169 (1206)
313 KOG0300|consensus 68.5 14 0.0003 30.3 5.2 58 3-62 158-218 (481)
314 KOG0293|consensus 67.5 30 0.00065 29.2 7.1 99 7-114 326-429 (519)
315 PRK01742 tolB translocation pr 67.5 66 0.0014 26.1 11.4 102 4-115 258-366 (429)
316 KOG2394|consensus 67.4 77 0.0017 27.7 9.6 108 7-114 187-324 (636)
317 KOG1034|consensus 67.4 12 0.00026 30.6 4.7 59 5-63 319-382 (385)
318 KOG1272|consensus 67.1 15 0.00033 31.2 5.4 35 83-117 293-330 (545)
319 PLN02919 haloacid dehalogenase 66.6 1.1E+02 0.0024 28.4 12.8 74 40-114 686-774 (1057)
320 KOG2315|consensus 66.3 88 0.0019 27.2 9.8 93 14-120 250-354 (566)
321 PHA03098 kelch-like protein; P 65.7 78 0.0017 26.3 11.5 91 16-113 407-514 (534)
322 KOG2321|consensus 65.4 58 0.0012 28.7 8.6 98 7-114 147-262 (703)
323 KOG1240|consensus 65.0 1.3E+02 0.0029 28.8 11.2 99 4-110 1109-1225(1431)
324 TIGR02604 Piru_Ver_Nterm putat 64.8 70 0.0015 25.5 12.6 109 5-115 24-177 (367)
325 PF04053 Coatomer_WDAD: Coatom 64.1 86 0.0019 26.2 10.9 99 4-120 43-144 (443)
326 KOG1064|consensus 63.8 18 0.00038 35.9 5.6 110 7-119 2222-2375(2439)
327 KOG4532|consensus 63.5 77 0.0017 25.5 12.5 97 12-116 177-288 (344)
328 KOG1896|consensus 62.9 1.5E+02 0.0032 28.5 11.2 94 14-109 1003-1123(1366)
329 PF10433 MMS1_N: Mono-function 62.6 53 0.0012 27.3 7.9 60 3-64 406-476 (504)
330 COG3391 Uncharacterized conser 62.4 81 0.0018 25.4 13.9 110 3-117 125-246 (381)
331 PRK01742 tolB translocation pr 61.8 86 0.0019 25.4 12.2 93 15-115 228-329 (429)
332 PF03022 MRJP: Major royal jel 61.6 29 0.00063 27.1 5.8 93 16-110 35-161 (287)
333 KOG1064|consensus 61.0 7.7 0.00017 38.1 2.8 86 3-107 2346-2434(2439)
334 KOG2695|consensus 60.0 29 0.00064 28.7 5.6 90 16-114 235-333 (425)
335 KOG0268|consensus 59.4 17 0.00037 30.1 4.2 59 6-65 285-346 (433)
336 KOG0771|consensus 59.2 22 0.00047 29.5 4.9 44 2-47 290-335 (398)
337 PF11635 Med16: Mediator compl 58.7 87 0.0019 27.9 8.9 32 34-65 257-290 (753)
338 KOG4714|consensus 58.4 49 0.0011 26.4 6.5 104 5-112 101-212 (319)
339 KOG1275|consensus 58.4 43 0.00094 31.0 6.8 76 5-82 187-265 (1118)
340 PRK00178 tolB translocation pr 58.3 96 0.0021 24.9 12.1 27 90-116 295-325 (430)
341 KOG1897|consensus 58.3 1.6E+02 0.0035 27.6 11.6 47 46-93 595-641 (1096)
342 COG2706 3-carboxymuconate cycl 58.2 1E+02 0.0022 25.2 11.4 112 3-116 49-181 (346)
343 PRK04922 tolB translocation pr 58.2 1E+02 0.0022 25.1 12.8 92 15-116 228-330 (433)
344 PHA02713 hypothetical protein; 57.8 1.2E+02 0.0026 25.9 10.8 78 16-101 321-406 (557)
345 PF08553 VID27: VID27 cytoplas 57.8 35 0.00075 30.9 6.2 60 2-63 585-646 (794)
346 KOG1009|consensus 57.7 25 0.00054 29.4 5.0 51 8-61 315-371 (434)
347 PF01403 Sema: Sema domain; I 57.7 21 0.00046 29.2 4.6 47 48-94 383-432 (433)
348 KOG1900|consensus 57.3 86 0.0019 30.0 8.7 105 3-110 138-272 (1311)
349 PHA02790 Kelch-like protein; P 57.1 1.1E+02 0.0025 25.4 10.8 66 40-113 401-473 (480)
350 PF14781 BBS2_N: Ciliary BBSom 56.6 69 0.0015 22.7 8.1 60 48-111 12-82 (136)
351 KOG1898|consensus 56.6 52 0.0011 30.8 7.1 49 14-63 911-961 (1205)
352 COG4946 Uncharacterized protei 56.6 91 0.002 27.0 8.2 82 30-116 219-301 (668)
353 PF11715 Nup160: Nucleoporin N 54.2 1.1E+02 0.0024 25.6 8.5 75 45-119 157-257 (547)
354 PRK05137 tolB translocation pr 54.2 1.2E+02 0.0025 24.6 12.6 95 14-116 225-328 (435)
355 KOG4499|consensus 53.6 83 0.0018 24.9 7.0 49 5-55 222-275 (310)
356 PF04841 Vps16_N: Vps16, N-ter 53.4 1.2E+02 0.0027 24.7 11.9 42 4-47 227-270 (410)
357 PF14870 PSII_BNR: Photosynthe 53.4 34 0.00073 27.2 5.0 57 5-61 243-301 (302)
358 PF10395 Utp8: Utp8 family; I 52.3 1E+02 0.0022 27.4 8.1 60 42-111 238-306 (670)
359 TIGR02800 propeller_TolB tol-p 52.1 1.2E+02 0.0025 24.0 13.1 26 91-116 287-316 (417)
360 PRK03629 tolB translocation pr 51.3 1.3E+02 0.0029 24.4 12.2 97 10-115 260-368 (429)
361 PF01403 Sema: Sema domain; I 51.0 27 0.00058 28.6 4.2 41 6-46 382-431 (433)
362 PLN00033 photosystem II stabil 50.8 1.4E+02 0.0031 24.6 10.9 96 4-105 290-393 (398)
363 KOG1900|consensus 50.2 81 0.0018 30.1 7.4 65 3-67 187-275 (1311)
364 KOG1538|consensus 50.1 1E+02 0.0022 28.0 7.6 20 46-65 234-253 (1081)
365 PF08662 eIF2A: Eukaryotic tra 49.5 98 0.0021 22.4 10.5 94 9-116 77-184 (194)
366 PHA02790 Kelch-like protein; P 49.4 1.5E+02 0.0033 24.6 11.4 90 16-113 288-387 (480)
367 PLN00033 photosystem II stabil 49.3 1.5E+02 0.0032 24.4 12.6 76 37-113 281-358 (398)
368 KOG3630|consensus 48.7 55 0.0012 31.1 6.0 78 12-98 175-258 (1405)
369 KOG1912|consensus 48.4 1.3E+02 0.0028 27.7 8.1 100 1-107 634-738 (1062)
370 PHA00653 mtd major tropism det 47.6 72 0.0016 26.1 6.0 59 3-61 20-78 (381)
371 PF14583 Pectate_lyase22: Olig 47.6 1.1E+02 0.0024 25.3 7.3 85 34-120 25-120 (386)
372 KOG3611|consensus 47.2 1.1E+02 0.0023 27.6 7.5 61 48-109 427-491 (737)
373 COG2319 FOG: WD40 repeat [Gene 47.1 1.1E+02 0.0024 22.2 12.7 96 12-116 131-235 (466)
374 PLN02153 epithiospecifier prot 46.9 1.4E+02 0.003 23.3 11.5 28 88-115 188-230 (341)
375 smart00036 CNH Domain found in 46.4 1.4E+02 0.003 23.3 12.4 108 5-119 165-279 (302)
376 KOG0292|consensus 46.0 2.6E+02 0.0056 26.3 9.8 104 5-111 218-349 (1202)
377 KOG2395|consensus 45.9 1.5E+02 0.0034 25.9 8.0 95 8-110 397-500 (644)
378 PF01731 Arylesterase: Arylest 45.1 46 0.00099 21.5 3.8 52 10-65 31-85 (86)
379 KOG4190|consensus 45.0 1.8E+02 0.0039 25.9 8.3 107 6-120 748-869 (1034)
380 KOG1524|consensus 44.7 2.2E+02 0.0048 25.1 10.1 24 4-27 115-138 (737)
381 PF14761 HPS3_N: Hermansky-Pud 44.5 66 0.0014 24.5 5.1 26 39-64 20-46 (215)
382 KOG3617|consensus 44.2 50 0.0011 30.7 5.0 38 30-67 297-336 (1416)
383 PLN02153 epithiospecifier prot 43.7 1.5E+02 0.0034 23.0 11.0 28 87-114 245-288 (341)
384 PF10387 DUF2442: Protein of u 42.1 81 0.0018 19.3 4.6 26 39-64 1-27 (79)
385 KOG0642|consensus 41.5 46 0.00099 28.9 4.2 56 4-61 500-558 (577)
386 PF07995 GSDH: Glucose / Sorbo 40.2 1.8E+02 0.004 22.9 8.9 95 6-101 13-132 (331)
387 KOG1523|consensus 39.8 2.1E+02 0.0046 23.4 7.8 103 3-109 65-175 (361)
388 TIGR03548 mutarot_permut cycli 38.9 1.8E+02 0.0039 22.4 10.8 69 40-113 117-197 (323)
389 PF09380 FERM_C: FERM C-termin 38.8 98 0.0021 19.3 8.0 55 3-61 2-60 (90)
390 KOG4283|consensus 38.7 1.6E+02 0.0035 24.1 6.7 59 3-63 156-218 (397)
391 KOG0918|consensus 38.7 98 0.0021 26.1 5.6 91 16-108 230-340 (476)
392 PRK04043 tolB translocation pr 38.6 2.2E+02 0.0048 23.3 12.1 29 88-116 283-315 (419)
393 PRK14131 N-acetylneuraminic ac 38.1 2.1E+02 0.0045 22.8 11.9 51 4-55 37-93 (376)
394 PRK03629 tolB translocation pr 37.8 2.2E+02 0.0048 23.1 11.7 25 92-116 297-325 (429)
395 KOG0974|consensus 37.3 2.2E+02 0.0049 26.5 8.0 103 4-117 186-295 (967)
396 KOG1896|consensus 36.5 2.7E+02 0.0058 26.9 8.5 94 12-111 1113-1216(1366)
397 KOG4379|consensus 36.5 1.6E+02 0.0034 25.4 6.6 66 44-109 516-594 (596)
398 KOG4283|consensus 36.2 2.4E+02 0.0052 23.1 9.6 107 4-119 55-185 (397)
399 PF08950 DUF1861: Protein of u 36.0 69 0.0015 25.6 4.2 21 46-66 130-150 (298)
400 KOG3616|consensus 35.6 75 0.0016 29.3 4.8 59 5-65 26-84 (1636)
401 PF06565 DUF1126: Repeat of un 35.6 24 0.00051 18.8 1.1 15 50-64 3-17 (33)
402 PF06977 SdiA-regulated: SdiA- 35.4 2.1E+02 0.0044 22.0 8.7 95 4-101 32-137 (248)
403 KOG1007|consensus 35.0 2.5E+02 0.0054 22.9 7.5 94 9-111 138-246 (370)
404 PF02911 Formyl_trans_C: Formy 34.8 76 0.0016 20.0 3.7 55 6-64 29-83 (100)
405 PRK02888 nitrous-oxide reducta 34.3 2.3E+02 0.0051 25.1 7.5 96 7-120 68-170 (635)
406 PF00930 DPPIV_N: Dipeptidyl p 34.0 91 0.002 24.6 4.7 51 55-113 22-74 (353)
407 PF03646 FlaG: FlaG protein; 34.0 48 0.001 21.7 2.7 17 103-119 69-85 (107)
408 PRK05137 tolB translocation pr 33.6 2.6E+02 0.0056 22.6 12.2 90 16-116 183-284 (435)
409 PF03022 MRJP: Major royal jel 32.8 51 0.0011 25.7 3.0 22 99-120 31-52 (287)
410 KOG0145|consensus 32.3 58 0.0012 26.0 3.2 40 16-55 280-329 (360)
411 KOG2394|consensus 32.2 1.6E+02 0.0034 25.9 5.9 58 4-63 301-361 (636)
412 KOG4328|consensus 31.8 3.3E+02 0.0072 23.3 9.5 110 8-118 338-458 (498)
413 PF01436 NHL: NHL repeat; Int 31.7 73 0.0016 15.7 3.3 17 99-115 10-26 (28)
414 cd00028 B_lectin Bulb-type man 31.6 1.5E+02 0.0033 19.4 5.0 10 14-23 30-39 (116)
415 KOG3914|consensus 31.1 2.8E+02 0.006 23.1 7.0 75 37-120 152-233 (390)
416 PF13449 Phytase-like: Esteras 30.0 2.1E+02 0.0046 22.4 6.2 18 49-66 219-236 (326)
417 PF13540 RCC1_2: Regulator of 29.7 84 0.0018 15.8 5.0 29 39-67 1-29 (30)
418 KOG0645|consensus 29.6 3E+02 0.0065 22.1 12.8 66 5-70 117-186 (312)
419 KOG2041|consensus 29.0 1.6E+02 0.0034 27.1 5.6 45 13-57 91-147 (1189)
420 smart00284 OLF Olfactomedin-li 28.9 1E+02 0.0023 24.0 4.1 31 89-119 133-170 (255)
421 PF14836 Ubiquitin_3: Ubiquiti 28.7 21 0.00046 23.4 0.3 20 51-70 67-87 (88)
422 KOG0641|consensus 27.8 3.1E+02 0.0066 21.7 11.8 78 37-117 90-178 (350)
423 COG3490 Uncharacterized protei 27.4 58 0.0013 26.4 2.5 19 83-101 225-244 (366)
424 KOG1310|consensus 27.3 4.1E+02 0.0089 23.6 7.7 69 35-112 49-127 (758)
425 KOG2395|consensus 26.6 1.8E+02 0.004 25.5 5.5 60 1-62 437-498 (644)
426 PRK04922 tolB translocation pr 26.6 3.5E+02 0.0075 21.9 13.2 28 88-115 342-373 (433)
427 cd05470 pepsin_retropepsin_lik 26.5 1E+02 0.0022 19.5 3.2 26 77-102 3-29 (109)
428 KOG0641|consensus 26.4 3.3E+02 0.0071 21.5 10.6 99 11-118 159-269 (350)
429 PRK13684 Ycf48-like protein; P 26.1 3.3E+02 0.0071 21.5 10.8 94 5-108 225-329 (334)
430 KOG1920|consensus 26.0 2.5E+02 0.0055 26.9 6.5 58 4-63 79-138 (1265)
431 PLN02193 nitrile-specifier pro 25.6 3.9E+02 0.0084 22.1 12.0 28 88-115 323-356 (470)
432 smart00108 B_lectin Bulb-type 25.5 2E+02 0.0043 18.7 5.3 19 13-33 28-46 (114)
433 COG4880 Secreted protein conta 25.0 2.8E+02 0.0062 23.9 6.2 43 12-55 155-197 (603)
434 PF09087 Cyc-maltodext_N: Cycl 24.6 2.1E+02 0.0045 18.6 4.6 47 6-54 5-56 (88)
435 COG4880 Secreted protein conta 24.5 4.6E+02 0.01 22.6 7.8 63 43-114 108-171 (603)
436 PRK04792 tolB translocation pr 24.3 4E+02 0.0087 21.8 13.5 27 90-116 314-344 (448)
437 PF08955 BofC_C: BofC C-termin 24.2 52 0.0011 20.9 1.4 21 46-66 8-29 (75)
438 KOG0290|consensus 24.1 4E+02 0.0087 21.7 6.7 94 11-116 262-363 (364)
439 COG5308 NUP170 Nuclear pore co 23.3 97 0.0021 28.9 3.4 60 3-64 141-209 (1263)
440 PF12280 BSMAP: Brain specific 23.1 58 0.0013 24.6 1.7 19 7-25 96-114 (207)
441 PLN03215 ascorbic acid mannose 22.2 3.8E+02 0.0081 22.1 6.4 51 57-109 175-226 (373)
442 TIGR02800 propeller_TolB tol-p 21.8 4E+02 0.0086 20.9 11.6 26 90-115 330-359 (417)
443 COG5170 CDC55 Serine/threonine 21.7 1.3E+02 0.0029 24.7 3.6 31 36-66 26-58 (460)
444 PRK04792 tolB translocation pr 21.0 4.7E+02 0.01 21.4 13.0 105 4-115 272-387 (448)
445 PF10648 Gmad2: Immunoglobulin 20.9 81 0.0018 20.3 1.9 17 53-69 71-88 (88)
446 KOG2139|consensus 20.5 2.1E+02 0.0047 23.9 4.6 56 46-108 110-168 (445)
447 PRK03467 hypothetical protein; 20.3 1.3E+02 0.0029 21.3 3.1 29 84-114 17-46 (144)
448 PF07893 DUF1668: Protein of u 20.0 4.5E+02 0.0098 20.9 8.6 71 36-120 66-142 (342)
No 1
>KOG3522|consensus
Probab=99.56 E-value=1.8e-15 Score=129.91 Aligned_cols=117 Identities=26% Similarity=0.394 Sum_probs=106.6
Q ss_pred CCCCCeEEEEecCCeEEEEECC-cccceeeeeEecC--CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAV-SQWRRCLHSIQLK--DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT 78 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~-~~~~~~l~~~~l~--~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~ 78 (121)
++..||+++|||+|.|.+|++. +..++++.+...| .+|.++.+..+.+++|+-||++++|.|..+|.||.++++.++
T Consensus 544 as~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~ 623 (925)
T KOG3522|consen 544 ASPHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIP 623 (925)
T ss_pred cCCCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCCCccccc
Confidence 5788999999999999999988 5445677777776 699999999999999999999999999999999999777789
Q ss_pred eCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019 79 LGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 79 lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~~~ 120 (121)
.|. .|||+++..++.+|+++|++|+||+.+|+..++++++
T Consensus 624 ~g~--lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~lea 663 (925)
T KOG3522|consen 624 TGS--LPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEA 663 (925)
T ss_pred cCC--ccccchhhhhceeeeecCCceEEEechhccccchhHH
Confidence 999 9999999999999999999999999999998887664
No 2
>KOG3522|consensus
Probab=99.27 E-value=1.4e-11 Score=106.36 Aligned_cols=114 Identities=20% Similarity=0.250 Sum_probs=97.3
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEe--cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ--LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL 81 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~--l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~ 81 (121)
.|..+|.|+++|+++||++.+..+......+ .-.+|++|.|.++.||+++++|+..+|. ..++.|++++....+.+.
T Consensus 634 ~~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlf-htetl~hlqd~niaT~vt 712 (925)
T KOG3522|consen 634 FQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLF-HTETLWHLQDSNIATSVT 712 (925)
T ss_pred hhhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEe-cccccCCccccccCccee
Confidence 4678999999999999999997654333332 2369999999999999999999999998 778889999988866666
Q ss_pred CCCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019 82 PHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 82 ~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~~~ 120 (121)
...|++.|.-+++.+|| .+.+.|.+..|+.+...+.+
T Consensus 713 ~~lP~~kllsv~~rl~c--~gl~~V~~~~~l~v~~~v~~ 749 (925)
T KOG3522|consen 713 VDLPFGKLLSVPGRLWC--QGLLMVLTSLTLLVALPVPR 749 (925)
T ss_pred ecCCCcccccCCCcccc--cceeEEeccceeEEEeeeee
Confidence 56799999999999999 99999999999999887653
No 3
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.54 E-value=1e-05 Score=57.89 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=74.6
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC-EEEEEec-CCcEEEEEcCCCCCCCCCCceE-EEeC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG-RVVCALA-DGSVAIFRRGPDGQWDLSKYHT-VTLG 80 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~-~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~-i~lg 80 (121)
.+.++.|+.+|.|++|+..+ .+.+..+..+ +.|.++.+.++ .++++.. ||.+.+|+ +...+. ..+.
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~ 132 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLET--GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD--------VETGKCLTTLR 132 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCc--ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE--------CCCcEEEEEec
Confidence 45899999999999999887 3455566544 58999998863 4555555 99999984 433322 2333
Q ss_pred CCCCceeEeeeeC--CEEEEEe-CCeEEEEeCCCCcEEEEEE
Q psy16019 81 LPHHSVRSLAAVY--NKVWCGY-KNKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 81 ~~~~pV~~m~~v~--~~lw~~~-gn~I~Vi~~~tl~i~~~~~ 119 (121)
....+|+++.... ..+.+++ .+.|+++|..+.+..+.++
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 174 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT 174 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe
Confidence 3346899999886 4455566 5789999999888776664
No 4
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.46 E-value=2.1e-05 Score=56.24 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=75.1
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
...+.+..|+++|.|.+|+..+ .+....+..+ ..+.++.+..+ .++++..||.+.+|+.... .....+
T Consensus 19 ~~~~~l~~~~~~g~i~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~ 89 (289)
T cd00200 19 PDGKLLATGSGDGTIKVWDLET--GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-------ECVRTL 89 (289)
T ss_pred CCCCEEEEeecCcEEEEEEeeC--CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-------cceEEE
Confidence 3457889999999999999886 3444555444 67778877654 7888888999999954321 112222
Q ss_pred CCCCCceeEeeeeC-CEE-EEEe-CCeEEEEeCCCCcEEEEEE
Q psy16019 80 GLPHHSVRSLAAVY-NKV-WCGY-KNKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 80 g~~~~pV~~m~~v~-~~l-w~~~-gn~I~Vi~~~tl~i~~~~~ 119 (121)
.....+|.++.... +++ .++. .+.|.++|..+.+....+.
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence 23236899998885 344 4444 4789999999888777664
No 5
>KOG0274|consensus
Probab=98.45 E-value=5.1e-06 Score=70.23 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=92.5
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL 81 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~ 81 (121)
+..+.+..|+-|.++.||++.+ -+|.+++. ++++|.||.-.+....-|..|-+|.|| +++++..+.+-.
T Consensus 259 ~~~~~lvsgS~D~t~rvWd~~s--g~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW--------~v~n~~~l~l~~ 328 (537)
T KOG0274|consen 259 SGGDKLVSGSTDKTERVWDCST--GECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVW--------DVTNGACLNLLR 328 (537)
T ss_pred cCCCEEEEEecCCcEEeEecCC--CcEEEEecCCCceEEEEEccCceEeeccCCceEEEE--------eccCcceEEEec
Confidence 4578999999999999999877 68999998 568999999988877778999999996 788887764433
Q ss_pred -CCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 82 -PHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 82 -~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
...||+||...++.+..|+. ..|.|.|+.+++..++++
T Consensus 329 ~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 329 GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred cccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeec
Confidence 56999999999999999998 569999999999998874
No 6
>PTZ00421 coronin; Provisional
Probab=98.30 E-value=6.5e-05 Score=62.90 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=78.7
Q ss_pred CCeEEEEecCCeEEEEECCccc-----ceeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQW-----RRCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYH 75 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~-----~~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~ 75 (121)
...+..|++||.|.||+..+.. .+++..+. +...|.++.++. +.++.|..||+|.+| |++...
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW--------Dl~tg~ 159 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW--------DVERGK 159 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE--------ECCCCe
Confidence 4578899999999999986531 12345554 347999999974 468888999999997 555443
Q ss_pred E-EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 76 T-VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 76 ~-i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
. ..+.....+|+++... ++.|..|+. +.|.++|+.+.+...+++
T Consensus 160 ~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 160 AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 3 3443334789999987 466777777 589999999998877664
No 7
>KOG0318|consensus
Probab=98.19 E-value=4e-05 Score=64.28 Aligned_cols=103 Identities=12% Similarity=0.113 Sum_probs=73.2
Q ss_pred CCCCCeEEEEecCCeEEEEECCccc-ceeeeeEecCCCEEEEEEeCCE--EEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQW-RRCLHSIQLKDSVLNIVHVQGR--VVCALADGSVAIFRRGPDGQWDLSKYHTVT 78 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~-~~~l~~~~l~~~V~~i~~~~~~--v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~ 78 (121)
+..+..+.+|.|||++|||++.... +++.+.+.++++|++|.|.++- +-++-+++.+.+|++.+... ....-.
T Consensus 452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~----~~~~w~ 527 (603)
T KOG0318|consen 452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV----KTNRWA 527 (603)
T ss_pred cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce----ecceee
Confidence 4567899999999999999988854 3455677889999999999764 44556679999997765432 111123
Q ss_pred eCCCCCceeEeeeeCCEEEEEeC---CeEEEEeCC
Q psy16019 79 LGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPK 110 (121)
Q Consensus 79 lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~ 110 (121)
+.+ ..|.||+-..+..-.|.| ..|+|.+.+
T Consensus 528 FHt--akI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 528 FHT--AKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred eee--eeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 344 678888877654444444 578887654
No 8
>KOG1036|consensus
Probab=98.18 E-value=3.1e-05 Score=61.17 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=80.4
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP 82 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~ 82 (121)
..+-|.+++=||.+.+|+...+ ..+..+++..|+++-.+.+ ..+|+|..||.|..| |++.-....+|.-
T Consensus 24 ~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~--------Dln~~~~~~igth 93 (323)
T KOG1036|consen 24 SSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRY--------DLNTGNEDQIGTH 93 (323)
T ss_pred cCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccCCceEEEeccCceEEEE--------EecCCcceeeccC
Confidence 4467888999999999998884 5567788889999999875 589999999999999 5555556677877
Q ss_pred CCceeEeeee--CCEEEEEeC-CeEEEEeCCC
Q psy16019 83 HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKS 111 (121)
Q Consensus 83 ~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~t 111 (121)
..|||||... .+++-.|.- ++|.++|+.+
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 7999999988 577777666 6899999985
No 9
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.17 E-value=9.2e-05 Score=50.77 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=63.1
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP 82 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~ 82 (121)
.++.+.+||+|..|.||.-. ..+.++.-++.|+++.+.. ++..-||+||+|.||++. ...|-.++ -
T Consensus 14 g~~eLlvGs~D~~IRvf~~~----e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~-~RlWRiKS--------K 80 (111)
T PF14783_consen 14 GENELLVGSDDFEIRVFKGD----EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS-QRLWRIKS--------K 80 (111)
T ss_pred CcceEEEecCCcEEEEEeCC----cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc-ceeeeecc--------C
Confidence 35789999999999999955 4578889999999999874 467779999999999773 24465332 2
Q ss_pred CCceeEeeeeC------CEEEEEeCC
Q psy16019 83 HHSVRSLAAVY------NKVWCGYKN 102 (121)
Q Consensus 83 ~~pV~~m~~v~------~~lw~~~gn 102 (121)
.-+.||...+ .+|-+|..|
T Consensus 81 -~~~~~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 81 -NQVTSMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred -CCeEEEEEEcCCCCCceEEEEEecC
Confidence 2345666553 367777774
No 10
>KOG0315|consensus
Probab=98.17 E-value=3e-05 Score=60.27 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=76.5
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCc-eE-EEeC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKY-HT-VTLG 80 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~-i~lg 80 (121)
..-|+.|+|||.+-||++.. ..|-..++.+++|.++.-+.| .+|+|-.+|.|-|| |+.+. +. .-+.
T Consensus 95 grWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvW--------Dl~~~~c~~~liP 164 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVW--------DLGENSCTHELIP 164 (311)
T ss_pred CeEEEecCCCceEEEEeccC--cccchhccCCCCcceEEecCCcceEEeecCCCcEEEE--------EccCCccccccCC
Confidence 44688999999999999998 567777888999999988755 69999999999997 55443 11 1233
Q ss_pred CCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019 81 LPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI 115 (121)
Q Consensus 81 ~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~ 115 (121)
++..||+++.+. ++.|.++.. .+-+|-+..+.+-.
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~ 202 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA 202 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc
Confidence 334899999888 466777665 67888877664433
No 11
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.16 E-value=0.00012 Score=54.37 Aligned_cols=107 Identities=22% Similarity=0.339 Sum_probs=69.1
Q ss_pred CCCeEEEEe-cCCeEEEEECCcccceeeeeEecC------C--CEEEEEEe--CCEEEEEec-CCcEEEEEcCCCCCCCC
Q psy16019 4 VLPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLK------D--SVLNIVHV--QGRVVCALA-DGSVAIFRRGPDGQWDL 71 (121)
Q Consensus 4 ~~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~------~--~V~~i~~~--~~~v~v~La-nG~l~Vy~r~~~g~wd~ 71 (121)
.+..+++++ .+|.|++|+..+ .+++.++..+ + ....|.+. +..+|++.+ ++.+.+| |.
T Consensus 167 dg~~l~~~~~~~~~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~--------d~ 236 (300)
T TIGR03866 167 DGKELWVSSEIGGTVSVIDVAT--RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV--------DA 236 (300)
T ss_pred CCCEEEEEcCCCCEEEEEEcCc--ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE--------EC
Confidence 445677776 489999999887 3444444321 1 22345554 446788754 5679988 44
Q ss_pred CCceEEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019 72 SKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 72 ~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~ 120 (121)
++.+.+..-....++.++... ++.|+++.+ +.|.|+|.++++..+++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 237 KTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred CCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 444443211112467777765 578888764 7899999999999988875
No 12
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.10 E-value=0.00022 Score=52.30 Aligned_cols=110 Identities=20% Similarity=0.310 Sum_probs=77.3
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEE-EEEeCCEEEEEecCCcEEEEEcCCCC-CCCCCCceEEEeCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN-IVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGL 81 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~-i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~~~i~lg~ 81 (121)
..+.+++++.++.|+.++..+ -+.+++..+++.+.. ....++.+|++..+|.|..|....+. .|.. -.-..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~-----~~~~~ 107 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKT--GKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI-----YLTSS 107 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTT--SEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE-----EE-SS
T ss_pred eCCEEEEEcCCCEEEEEECCC--CCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeee-----ccccc
Confidence 467899999999999999866 377888888754322 47789999999999999998633221 2431 01111
Q ss_pred CCC---ceeEeeeeCCEEEEEe-CCeEEEEeCCCCcEEEEEEe
Q psy16019 82 PHH---SVRSLAAVYNKVWCGY-KNKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 82 ~~~---pV~~m~~v~~~lw~~~-gn~I~Vi~~~tl~i~~~~~~ 120 (121)
+.. +.....+.++.+++++ ...|+.+|++|+++.-+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 111 2223444589999999 58999999999999776653
No 13
>KOG1036|consensus
Probab=98.10 E-value=7.4e-05 Score=59.09 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=78.2
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEeCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLGL 81 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~lg~ 81 (121)
-.++|.|+-||.|..|+++.. +..+--.+-++|.||.|. .+.|.+|.=|+++.+| |...... ..+..
T Consensus 65 ~~~~~~G~~dg~vr~~Dln~~--~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~w--------D~R~~~~~~~~d~ 134 (323)
T KOG1036|consen 65 ESTIVTGGLDGQVRRYDLNTG--NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFW--------DPRNKVVVGTFDQ 134 (323)
T ss_pred CceEEEeccCceEEEEEecCC--cceeeccCCCceEEEEeeccCCeEEEcccCccEEEE--------ecccccccccccc
Confidence 358999999999999998872 323322455899999998 8899999999999996 6554322 23333
Q ss_pred CCCceeEeeeeCCEEEEEeCC-eEEEEeCCCCcE
Q psy16019 82 PHHSVRSLAAVYNKVWCGYKN-KIHVVDPKSLDV 114 (121)
Q Consensus 82 ~~~pV~~m~~v~~~lw~~~gn-~I~Vi~~~tl~i 114 (121)
.+.|-||...++.|-+||.+ +|.++|..+++.
T Consensus 135 -~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 135 -GKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred -CceEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence 46999999999999998885 899999999875
No 14
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.09 E-value=0.00016 Score=58.37 Aligned_cols=102 Identities=18% Similarity=0.296 Sum_probs=72.8
Q ss_pred CeEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEE-EEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EE
Q psy16019 6 PTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLN-IVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VT 78 (121)
Q Consensus 6 ~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~-i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~ 78 (121)
+.+.+-. ++|.+.|++... ++.+.++....++.. +.+. +.++||+..||.|.++ |+.+.++ ++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t--~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi--------D~~~~~~v~~i~ 75 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGAT--NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVI--------DLATGKVVATIK 75 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEE--------ETTSSSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCC--CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEE--------ECCcccEEEEEe
Confidence 3444444 689999999888 678888887755433 4444 3579999999999999 6766655 67
Q ss_pred eCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019 79 LGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 79 lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~ 120 (121)
+|. .| +.+++. ++.++++|. +.+.|||++|+++.+.+++
T Consensus 76 ~G~--~~-~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 76 VGG--NP-RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp -SS--EE-EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred cCC--Cc-ceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 777 45 567765 578998886 8999999999999998764
No 15
>KOG0266|consensus
Probab=98.08 E-value=0.00017 Score=59.52 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=81.0
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV- 77 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i- 77 (121)
++.+..+.-|++|+.|.||+..+. .+++++++ +++.|+|+.++ ++.++.|..||++.|| |+...+.+
T Consensus 212 s~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW--------d~~~~~~~~ 282 (456)
T KOG0266|consen 212 SPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW--------DVRTGECVR 282 (456)
T ss_pred CCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE--------eccCCeEEE
Confidence 455568889999999999999552 36788884 67899999987 4589999999999997 66654332
Q ss_pred EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcE
Q psy16019 78 TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDV 114 (121)
Q Consensus 78 ~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i 114 (121)
.+..-..+|+++... ++.|+.|+. +.|.|.|..++++
T Consensus 283 ~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 283 KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 333323899999888 478888876 6899999999994
No 16
>PTZ00420 coronin; Provisional
Probab=98.05 E-value=0.00034 Score=59.65 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=75.6
Q ss_pred CCeEEEEecCCeEEEEECCcccc------eeeeeEe-cCCCEEEEEEeCC--EEE-EEecCCcEEEEEcCCCCCCCCCCc
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWR------RCLHSIQ-LKDSVLNIVHVQG--RVV-CALADGSVAIFRRGPDGQWDLSKY 74 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~------~~l~~~~-l~~~V~~i~~~~~--~v~-v~LanG~l~Vy~r~~~g~wd~~~~ 74 (121)
.+.+..|++||.|.||+..+... .++..+. +...|.++.++.+ .++ .|..||+|.+| |+...
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW--------Dl~tg 158 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW--------DIENE 158 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE--------ECCCC
Confidence 35788999999999999865211 1233443 4478999999853 344 57789999997 55544
Q ss_pred eE-EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 75 HT-VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 75 ~~-i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
.. ..+.. +.+|.++... ++.|.++|. +.|.|+|+.+.++.++|+.
T Consensus 159 ~~~~~i~~-~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 159 KRAFQINM-PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred cEEEEEec-CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 32 33332 2689999876 466666775 6899999999999887753
No 17
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.02 E-value=0.00022 Score=56.54 Aligned_cols=105 Identities=11% Similarity=0.154 Sum_probs=74.5
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCE-EEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCCCCceEEEeCCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSV-LNIVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLP 82 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V-~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~~~i~lg~~ 82 (121)
.+.+++|+.+|.++.|+..+ -+.+++.++++.+ ......++++|++..||.|..|+...+. .|..+. +.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~t--G~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~------~~- 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAET--GKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKL------SS- 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccC--CcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc------Cc-
Confidence 45899999999999999766 3668887777533 2345668899999999999999765432 464332 22
Q ss_pred CCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 83 HHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 83 ~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
.......+.++.++++++ +.++.+|++++++.-+++
T Consensus 136 -~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 136 -EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred -eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 111222345788888877 579999999998765543
No 18
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.99 E-value=0.00034 Score=55.45 Aligned_cols=106 Identities=17% Similarity=0.141 Sum_probs=76.2
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCCCCceEEEeCCCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPH 83 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~~~i~lg~~~ 83 (121)
.+.+++++.+|.++.|+..+ -+.+++.+.+. .......+++||++..||.|..++...+. .|..+. ++.
T Consensus 241 ~~~vy~~~~~g~l~a~d~~t--G~~~W~~~~~~-~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-----~~~-- 310 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRS--GRVLWKRDASS-YQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDE-----LKY-- 310 (377)
T ss_pred CCEEEEEEcCCEEEEEECCC--CcEEEeeccCC-ccCceEeCCEEEEECCCCeEEEEECCCCcEEEcccc-----ccC--
Confidence 35789999999999999876 35566665442 12334568899999999999999775442 465422 222
Q ss_pred CceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 84 HSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 84 ~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
....+..+.++.|++++. ..|+++|+.++++..++++
T Consensus 311 ~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 311 RQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred CccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 222334557899999988 5899999999999887764
No 19
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.91 E-value=0.00092 Score=50.60 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=73.4
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCC-----------
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQW----------- 69 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~w----------- 69 (121)
.+.+..+++||++| ||+|+..+. .+.....+. .+|.+|...+ -.+++.|+||.|.+|+-..-..-
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~~-~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDP-SKPTRILKL-SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCC-ccceeEeec-ceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccc
Confidence 45678999999999 999998331 122222222 2388887765 35788889999998874321000
Q ss_pred --------CCCCceEE-----------------------EeCC-------------CCCceeEeeeeCCEEEEEeCCeEE
Q psy16019 70 --------DLSKYHTV-----------------------TLGL-------------PHHSVRSLAAVYNKVWCGYKNKIH 105 (121)
Q Consensus 70 --------d~~~~~~i-----------------------~lg~-------------~~~pV~~m~~v~~~lw~~~gn~I~ 105 (121)
+...-..+ .... -+.++++|...++.+.+|..+...
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~ 160 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFY 160 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceE
Confidence 00000000 0000 035778888889999999999999
Q ss_pred EEeCCCCcEEEEE
Q psy16019 106 VVDPKSLDVIRPV 118 (121)
Q Consensus 106 Vi~~~tl~i~~~~ 118 (121)
++|..+++.+.-+
T Consensus 161 ~idl~~~~~~~l~ 173 (275)
T PF00780_consen 161 LIDLNTGSPSELL 173 (275)
T ss_pred EEecCCCCceEEe
Confidence 9999998877644
No 20
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.89 E-value=0.00063 Score=54.60 Aligned_cols=106 Identities=9% Similarity=0.057 Sum_probs=75.7
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCCCCceEEEeCCCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPH 83 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~~~i~lg~~~ 83 (121)
.+.+++++.+|.++.++..+. +.+++.++... ..+...+++||++..||.|..++...+. .|..+.. +.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~~~-~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----~~-- 325 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSG--QIVWKREYGSV-NDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-----LH-- 325 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCC--CEEEeecCCCc-cCcEEECCEEEEEcCCCeEEEEECCCCcEEEccccc-----CC--
Confidence 467899999999999998763 55666555432 2345678999999999999999876443 3653321 11
Q ss_pred CceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 84 HSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 84 ~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
....+..+.++.|+++.. ..++++|+.|+++.-++++
T Consensus 326 ~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 326 RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 112233457899999988 5799999999999877653
No 21
>KOG0296|consensus
Probab=97.89 E-value=0.00014 Score=58.81 Aligned_cols=97 Identities=21% Similarity=0.204 Sum_probs=73.4
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E-
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T- 78 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~- 78 (121)
++..|..-+|.-||+|.||++.. .+..+.+.++++|+++++.. .++|+|.+||.|..| |...-..+ .
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~--~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~w--------DaRtG~l~~~y 364 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAA--STLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQW--------DARTGQLKFTY 364 (399)
T ss_pred ccccchhhcccccceEEEEeccc--chhheeccCCCceEEEEEcCcchheeeccCceEEee--------eccccceEEEE
Confidence 45677888999999999999876 35567778999999999987 899999999999997 54443332 2
Q ss_pred eCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeC
Q psy16019 79 LGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDP 109 (121)
Q Consensus 79 lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~ 109 (121)
-|. +.+|-++++.. +.+--++. |.-+||+.
T Consensus 365 ~GH-~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 365 TGH-QMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ecC-chheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 233 58999999884 44444555 66777654
No 22
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.85 E-value=0.0014 Score=48.59 Aligned_cols=101 Identities=10% Similarity=0.129 Sum_probs=66.4
Q ss_pred EEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC--EEEEE-ecCCcEEEEEcCCCCCCCCCCceEE-EeCCCC
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG--RVVCA-LADGSVAIFRRGPDGQWDLSKYHTV-TLGLPH 83 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~--~v~v~-LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~~ 83 (121)
+..+..+|.|++|+..+ .+.++.+.....+.++.+..+ .+|++ ..+|.|.+|+ ....+.+ .+....
T Consensus 4 ~~s~~~d~~v~~~d~~t--~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d--------~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 4 YVSNEKDNTISVIDTAT--LEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVID--------LATGEVIGTLPSGP 73 (300)
T ss_pred EEEecCCCEEEEEECCC--CceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEE--------CCCCcEEEeccCCC
Confidence 34567899999999876 456777776666667776533 57654 5678999984 3333332 122111
Q ss_pred CceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019 84 HSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 84 ~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~ 119 (121)
.| ..+... ++.++++++ +.|.++|..+.+....++
T Consensus 74 ~~-~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~ 112 (300)
T TIGR03866 74 DP-ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP 112 (300)
T ss_pred Cc-cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee
Confidence 23 444444 467888765 689999999988777665
No 23
>KOG0316|consensus
Probab=97.80 E-value=0.00012 Score=56.70 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=80.4
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHH 84 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~ 84 (121)
.-+.-|+-|.++.+|++.++..++++.+. -.|.|.+|...+-.+.+|.+||++-.|.-. .-.+. ..--.+
T Consensus 114 SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR--------~G~l~-sDy~g~ 184 (307)
T KOG0316|consen 114 SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIR--------KGTLS-SDYFGH 184 (307)
T ss_pred eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEee--------cceee-hhhcCC
Confidence 34667888999999999997777888884 459999999999999999999999999432 22221 111146
Q ss_pred ceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019 85 SVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 85 pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~ 117 (121)
||.|+... ++.+-+|+= ..+..+|-+|+++.++
T Consensus 185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred cceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 99999888 488888887 4799999999998654
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.78 E-value=0.0014 Score=57.19 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=71.9
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCce--EEEe
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYH--TVTL 79 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~--~i~l 79 (121)
.+.+..|+.||.|.+|+... .+++.++.....|.++.+. ...+.+|..||.|.+|+ +.+.+ ...+
T Consensus 588 ~~~L~Sgs~Dg~v~iWd~~~--~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD--------~~~~~~~~~~~ 657 (793)
T PLN00181 588 PTLLASGSDDGSVKLWSINQ--GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYD--------LRNPKLPLCTM 657 (793)
T ss_pred CCEEEEEcCCCEEEEEECCC--CcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE--------CCCCCccceEe
Confidence 45788999999999999987 4677777777889999874 45788999999999984 43322 2223
Q ss_pred CCCCCceeEeeeeC-CEEEEEeC-CeEEEEeCCC
Q psy16019 80 GLPHHSVRSLAAVY-NKVWCGYK-NKIHVVDPKS 111 (121)
Q Consensus 80 g~~~~pV~~m~~v~-~~lw~~~g-n~I~Vi~~~t 111 (121)
.....+|.++...+ +.+..|+. +.|.+.|..+
T Consensus 658 ~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 658 IGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred cCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCC
Confidence 22237899998875 55666666 6899999864
No 25
>KOG2077|consensus
Probab=97.75 E-value=6e-06 Score=69.96 Aligned_cols=44 Identities=48% Similarity=0.877 Sum_probs=41.0
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH 44 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~ 44 (121)
|+++.||+|+|-+++.||++++...||+|++.++++|+|+++.|
T Consensus 789 ~s~a~pt~w~G~qn~~vy~hsav~~wk~cL~~ik~~d~vls~vh 832 (832)
T KOG2077|consen 789 ASDAVPTSWTGVQNEHVYTHSAVVQWKECLSPIKQSDYVLSSVH 832 (832)
T ss_pred ccccccceeeccccceEEeehhhhhHHHHhhhhcccchhhcccC
Confidence 67889999999999999999999999999999999999998753
No 26
>KOG0279|consensus
Probab=97.75 E-value=0.00057 Score=53.74 Aligned_cols=115 Identities=21% Similarity=0.312 Sum_probs=83.8
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeEe--c-CCCEEEEEEeCC----EEEEEecCCcEEEEEcCC--------
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ--L-KDSVLNIVHVQG----RVVCALADGSVAIFRRGP-------- 65 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~--l-~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~-------- 65 (121)
|++...++.-|+.|..|-+|+... .|+-++. . .+=|.|++++++ .+.-+..|++|-||....
T Consensus 113 ~s~dn~qivSGSrDkTiklwnt~g---~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~ 189 (315)
T KOG0279|consen 113 FSTDNRQIVSGSRDKTIKLWNTLG---VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI 189 (315)
T ss_pred ecCCCceeecCCCcceeeeeeecc---cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc
Confidence 456677899999999999999887 4444331 2 577999998765 355566677777775543
Q ss_pred -----------------------CC---CCCCCCceEE-EeCCCCCceeEeeeeCCEEEEEe--CCeEEEEeCCCCcEEE
Q psy16019 66 -----------------------DG---QWDLSKYHTV-TLGLPHHSVRSLAAVYNKVWCGY--KNKIHVVDPKSLDVIR 116 (121)
Q Consensus 66 -----------------------~g---~wd~~~~~~i-~lg~~~~pV~~m~~v~~~lw~~~--gn~I~Vi~~~tl~i~~ 116 (121)
|| .||+++-+-+ +++. ..+|++|++.+++.|.+- +..|.|.|.++..+.-
T Consensus 190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a-~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA-FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC-CCeEeeEEecCCceeEeeccCCceEEEeccchhhhh
Confidence 22 4888877554 5543 589999999999988754 5899999999877665
Q ss_pred EEE
Q psy16019 117 PVT 119 (121)
Q Consensus 117 ~~~ 119 (121)
.+.
T Consensus 269 ~l~ 271 (315)
T KOG0279|consen 269 ELK 271 (315)
T ss_pred hcc
Confidence 443
No 27
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.71 E-value=0.0018 Score=50.53 Aligned_cols=109 Identities=11% Similarity=0.184 Sum_probs=73.8
Q ss_pred CCeEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019 5 LPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH 83 (121)
Q Consensus 5 ~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~ 83 (121)
.+.+|.=| .+|..++|+... -+.+.+++.|..==-|++.+..++++-++..|..++.. +++..+.|++-+-.
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~-----~f~~~~~i~V~~~g 171 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPE-----TFKEVRTIQVTDNG 171 (264)
T ss_dssp TTEEEEEESSSSEEEEEETTT--TEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TT-----T-SEEEEEE-EETT
T ss_pred CCEEEEEEecCCeEEEEcccc--ceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCc-----ccceEEEEEEEECC
Confidence 46777777 799999999887 46778888885444566888888888777777776221 34444556554434
Q ss_pred CceeE---eeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019 84 HSVRS---LAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 84 ~pV~~---m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~ 120 (121)
.||+. |..+++.|||-.- +.|..||++|++++..+.+
T Consensus 172 ~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 172 RPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp EE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred EECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence 67666 7788899999776 8999999999999988754
No 28
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.69 E-value=0.0037 Score=45.70 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCC------------EEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDS------------VLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLS 72 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~------------V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~ 72 (121)
.+.+.+++.+|.|+.++..+ -+.++..+.+.+ -......++.+|++..+|.+.-++. .
T Consensus 122 ~~~~~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~--------~ 191 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKT--GKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDL--------A 191 (238)
T ss_dssp TTEEEEEETCSEEEEEETTT--TEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEET--------T
T ss_pred cCEEEEEeccCcEEEEecCC--CcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEEC--------C
Confidence 56789999999999999887 366777665431 1334445679999999997555532 2
Q ss_pred CceEE-EeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019 73 KYHTV-TLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVI 115 (121)
Q Consensus 73 ~~~~i-~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~ 115 (121)
+.+.+ +.- +..+...+...++.||+++. ++++.+|++|+++.
T Consensus 192 tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 192 TGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 22222 111 11222236677899999994 89999999999875
No 29
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.67 E-value=0.0013 Score=52.71 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=76.0
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCCC----------E--EEEEEeCCEEEEEecCCcEEEEEcCCCC-CCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDS----------V--LNIVHVQGRVVCALADGSVAIFRRGPDG-QWD 70 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~----------V--~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd 70 (121)
..+.|++++.+|.++-++..+ -+.+|+.+++.. . -.+...+++||++..+|.|..|+..++. .|.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADT--GKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCC--CcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 356899999999999999876 356777666530 0 1245678899999999999999876543 576
Q ss_pred CCCceEEEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 71 LSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 71 ~~~~~~i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
.+-+..+ . ..| .+.++.++++.+ +.++.+|++|+++.=+++
T Consensus 146 ~~~~~~~--~--ssP----~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 146 TKVAGEA--L--SRP----VVSDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred ccCCCce--e--cCC----EEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 5433211 1 123 445889999888 579999999999876554
No 30
>KOG0274|consensus
Probab=97.62 E-value=0.00054 Score=58.10 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=86.8
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCc--eEEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKY--HTVT 78 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~--~~i~ 78 (121)
-.++.+.-|++||.|-||+... -+|+++++ +..+|.++.+.. +++|-|.-|++|-+| |+..+ ....
T Consensus 339 ~~~~~lvsgs~d~~v~VW~~~~--~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvW--------dl~~~~~c~~t 408 (537)
T KOG0274|consen 339 LDEPLLVSGSYDGTVKVWDPRT--GKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVW--------DLRTKRKCIHT 408 (537)
T ss_pred ecCCEEEEEecCceEEEEEhhh--ceeeeeecCCcceEEEEEecCcceEEeeeeccceEee--------cCCchhhhhhh
Confidence 3478899999999999999985 68999996 458999999888 999999999999995 77777 3345
Q ss_pred eCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 79 LGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 79 lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
+..+..-|.+|..-.+.|-.++- +.|.+-|.++++..+.++.
T Consensus 409 l~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 409 LQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred hcCCcccccccccccceeEeccccccEEEeecccCceeeeecc
Confidence 55554666666666777655444 7899999999999988764
No 31
>KOG1539|consensus
Probab=97.60 E-value=0.0013 Score=57.77 Aligned_cols=106 Identities=18% Similarity=0.199 Sum_probs=81.0
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT 78 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~ 78 (121)
+-.|.+.+|.+.|.+.+||... +|.+.+++ .++.|++|.... +-|-+|+.||+|.+|.-. --+. .+
T Consensus 170 TYLNKIvvGs~~G~lql~Nvrt--~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK--------~dkil~s 239 (910)
T KOG1539|consen 170 TYLNKIVVGSSQGRLQLWNVRT--GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK--------FDKILMS 239 (910)
T ss_pred hheeeEEEeecCCcEEEEEecc--CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc--------cCcEEEE
Confidence 4567899999999999999998 68888885 468999999764 579999999999999543 3333 34
Q ss_pred eCCCCCceeEeeee--C-CEEEEEeCC-eEEEEeCCCCcEEEEE
Q psy16019 79 LGLPHHSVRSLAAV--Y-NKVWCGYKN-KIHVVDPKSLDVIRPV 118 (121)
Q Consensus 79 lg~~~~pV~~m~~v--~-~~lw~~~gn-~I~Vi~~~tl~i~~~~ 118 (121)
+-.+..+|+++..- + -.|..|+.| .+.+.|.+.-++....
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee
Confidence 44444788888887 3 445667775 4889998887776654
No 32
>KOG0647|consensus
Probab=97.59 E-value=0.0012 Score=52.57 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=79.6
Q ss_pred CeEEEEecCCeEEEEECCcc-cceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQ-WRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP 82 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~-~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~ 82 (121)
+.+..|+=||.+.+|..... .........++.+|+|+.+.+ .+||+|.+||.+-+| |+.+-++.+++.-
T Consensus 41 ~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w--------DL~S~Q~~~v~~H 112 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW--------DLASGQVSQVAAH 112 (347)
T ss_pred ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE--------EccCCCeeeeeec
Confidence 45668889999999998774 122334457889999999975 589999999999996 8888888777766
Q ss_pred CCceeEeeeeCC----EEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 83 HHSVRSLAAVYN----KVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 83 ~~pV~~m~~v~~----~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
..|||++.-+++ .|.-|+- ..+.--|+++-....+++
T Consensus 113 d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~ 154 (347)
T KOG0647|consen 113 DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ 154 (347)
T ss_pred ccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee
Confidence 689999988853 4455665 467777777666555543
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.58 E-value=0.0032 Score=55.03 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=70.8
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL 79 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l 79 (121)
...+-.|+.||.|.+|+... .+.+..++ +.+.|+++.++. +.++.|..||++.+|+. .....+ .+
T Consensus 545 ~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~--------~~~~~~~~~ 614 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI--------NQGVSIGTI 614 (793)
T ss_pred CCEEEEEeCCCeEEEEECCC--CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC--------CCCcEEEEE
Confidence 34677888999999999886 46666664 458999999963 46788999999999854 332221 22
Q ss_pred CCCCCceeEeeee---CCEEEEEeC-CeEEEEeCCCCc
Q psy16019 80 GLPHHSVRSLAAV---YNKVWCGYK-NKIHVVDPKSLD 113 (121)
Q Consensus 80 g~~~~pV~~m~~v---~~~lw~~~g-n~I~Vi~~~tl~ 113 (121)
.. ..+|.|+... +..+..|+. +.|+++|..+.+
T Consensus 615 ~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~ 651 (793)
T PLN00181 615 KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK 651 (793)
T ss_pred ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 22 2578888764 467777777 689999998764
No 34
>KOG0646|consensus
Probab=97.56 E-value=0.0016 Score=53.99 Aligned_cols=103 Identities=22% Similarity=0.202 Sum_probs=77.9
Q ss_pred CCCeEEEEecCCeEEEEECCcc-------cceeeeeEec-CCCEEEEEEeC----CEEEEEecCCcEEEEEcCCCCCCCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQ-------WRRCLHSIQL-KDSVLNIVHVQ----GRVVCALADGSVAIFRRGPDGQWDL 71 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~-------~~~~l~~~~l-~~~V~~i~~~~----~~v~v~LanG~l~Vy~r~~~g~wd~ 71 (121)
...-+.-|++||.+++|++.+- ..+.++.+.- .-+|++++.-. .++|.+..|-++-+| |+
T Consensus 134 dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w--------dl 205 (476)
T KOG0646|consen 134 DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW--------DL 205 (476)
T ss_pred CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE--------Ee
Confidence 3456778999999999985431 2245666643 46999999754 499999999999998 66
Q ss_pred CCceE-EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019 72 SKYHT-VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI 115 (121)
Q Consensus 72 ~~~~~-i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~ 115 (121)
..-.+ +++..| .|+.||++- +..+|+|.. .+|++++..++.-+
T Consensus 206 S~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 206 SLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ 252 (476)
T ss_pred ccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence 55555 466655 789998866 688999999 78999998887643
No 35
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.53 E-value=0.0056 Score=49.53 Aligned_cols=103 Identities=13% Similarity=0.145 Sum_probs=68.6
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEe-----------cCCCEEEEEEe--CCEEEEE-ecCC---------cEEE
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-----------LKDSVLNIVHV--QGRVVCA-LADG---------SVAI 60 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-----------l~~~V~~i~~~--~~~v~v~-LanG---------~l~V 60 (121)
....+|+-.| |.|++++.....-+.+..+. -|....-+.++ .+++||+ +..+ .|+|
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 3457788777 99999995442112222222 12222235555 6799994 4332 6999
Q ss_pred EEcCCCCCCCCCCceE---EEeCCCCCceeEeeee--CC-EEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019 61 FRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV--YN-KVWCGYK--NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 61 y~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v--~~-~lw~~~g--n~I~Vi~~~tl~i~~~~ 118 (121)
+ |....+. |.+|. ++..|.+. ++ .||..++ +.|.|||+.+++..+++
T Consensus 284 i--------D~~t~kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 284 V--------DAKTGKRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred E--------ECCCCeEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8 6777766 46666 45555655 57 8999996 67999999999999987
No 36
>KOG0294|consensus
Probab=97.52 E-value=0.0014 Score=52.39 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=66.1
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeCC----EEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQG----RVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
.+.+--|+.|..|+||+... ++.+..+-. .++|+++++..+ .+..|..||.+++|+. |.|. -.+.++-
T Consensus 53 ~~~~aSGssDetI~IYDm~k--~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~---~~W~--~~~slK~ 125 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRK--RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV---GSWE--LLKSLKA 125 (362)
T ss_pred ceeEeccCCCCcEEEEeccc--hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc---CCeE--Eeeeecc
Confidence 45566788899999999998 678888754 489999998754 5999999999999854 3342 1122222
Q ss_pred CCCCCceeEeeeeC-CEEEEEeC--CeEEEEeCCCCc
Q psy16019 80 GLPHHSVRSLAAVY-NKVWCGYK--NKIHVVDPKSLD 113 (121)
Q Consensus 80 g~~~~pV~~m~~v~-~~lw~~~g--n~I~Vi~~~tl~ 113 (121)
.. .-|+-+.+.. ++|..+-| ..+...|.-+++
T Consensus 126 H~--~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 126 HK--GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred cc--cccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 22 3366666663 56666555 245555544443
No 37
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.51 E-value=0.0029 Score=49.44 Aligned_cols=95 Identities=15% Similarity=0.292 Sum_probs=67.9
Q ss_pred CCeEEEEec---------C-CeEEEEECCcc----cc-eeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCC
Q psy16019 5 LPTMWLGSQ---------N-GSVFVHSAVSQ----WR-RCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQW 69 (121)
Q Consensus 5 ~~tvwiGt~---------~-g~I~v~~~~~~----~~-~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~w 69 (121)
.+.+.+||. . |+|++|...+. .+ +.+++..++++|++|...+++ +++..++.|.+|+-..+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~-- 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSK-- 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTS--
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcc--
Confidence 456778875 2 99999998883 11 235566788999999999999 555566899999654322
Q ss_pred CCCCceEEEeC--CCCCceeEeeeeCCEEEEEeC-CeEEEE
Q psy16019 70 DLSKYHTVTLG--LPHHSVRSLAAVYNKVWCGYK-NKIHVV 107 (121)
Q Consensus 70 d~~~~~~i~lg--~~~~pV~~m~~v~~~lw~~~g-n~I~Vi 107 (121)
++++.+ +.+..+.+|...++.+++|.- ..|.++
T Consensus 119 -----~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 119 -----TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp -----SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEE
T ss_pred -----cchhhheecceEEEEEEeccccEEEEEEcccCEEEE
Confidence 243332 223588899999999999988 678877
No 38
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=97.51 E-value=0.00065 Score=52.78 Aligned_cols=58 Identities=24% Similarity=0.420 Sum_probs=47.9
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE------eCCEEEEEecCCcEEEEEc
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH------VQGRVVCALADGSVAIFRR 63 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~------~~~~v~v~LanG~l~Vy~r 63 (121)
+.+.+-+|||+|.|||.+... ...++++++|+....|.. .+.+++|+.-||.|...+|
T Consensus 194 a~scLViGTE~~~i~iLd~~a--f~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~irr 257 (257)
T PF14779_consen 194 AVSCLVIGTESGEIYILDPQA--FTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTIRR 257 (257)
T ss_pred CcceEEEEecCCeEEEECchh--heeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEEeC
Confidence 456899999999999999888 577889999975445542 4679999999999998865
No 39
>KOG0291|consensus
Probab=97.48 E-value=0.0038 Score=54.70 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=78.6
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-E
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-V 77 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i 77 (121)
++....|-.|.+||+|-||+..+ --|..++. +.+.|+-+++. ++-++.+.-||+|-.| |+..++- -
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~S--gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw--------DlkRYrNfR 428 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQS--GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW--------DLKRYRNFR 428 (893)
T ss_pred CCCCcEEEeccCCCcEEEEeccC--ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee--------eecccceee
Confidence 45566888999999999999887 46999994 55888777764 6789999999999996 7777643 2
Q ss_pred EeCCC-CCceeEeeee--CCEEEEEeCC--eEEEEeCCCCcEEEE
Q psy16019 78 TLGLP-HHSVRSLAAV--YNKVWCGYKN--KIHVVDPKSLDVIRP 117 (121)
Q Consensus 78 ~lg~~-~~pV~~m~~v--~~~lw~~~gn--~I~Vi~~~tl~i~~~ 117 (121)
++-.| +.-..|++.- +.-+.+|..+ .|+|-+..|+++...
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 44444 2344566655 4455666666 699999999988653
No 40
>KOG1446|consensus
Probab=97.47 E-value=0.0067 Score=48.12 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=82.3
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCc--EEEEEcCCCCCCCCCCceEEE
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGS--VAIFRRGPDGQWDLSKYHTVT 78 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~--l~Vy~r~~~g~wd~~~~~~i~ 78 (121)
|+++.++..-|+.|.+|..|++.. ++|..-+.++... ...|...-++.|+++|+ |-+|....- |-.+..++.
T Consensus 108 ~sP~~d~FlS~S~D~tvrLWDlR~--~~cqg~l~~~~~p-i~AfDp~GLifA~~~~~~~IkLyD~Rs~---dkgPF~tf~ 181 (311)
T KOG1446|consen 108 VSPKDDTFLSSSLDKTVRLWDLRV--KKCQGLLNLSGRP-IAAFDPEGLIFALANGSELIKLYDLRSF---DKGPFTTFS 181 (311)
T ss_pred ecCCCCeEEecccCCeEEeeEecC--CCCceEEecCCCc-ceeECCCCcEEEEecCCCeEEEEEeccc---CCCCceeEc
Confidence 566778888999999999999996 7888888887654 34566554555555554 788866432 334456677
Q ss_pred eCCC-CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 79 LGLP-HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 79 lg~~-~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
++++ ..-..-|... ++.+-.+.. +.++++|+.++.++.+|+.
T Consensus 182 i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 182 ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG 227 (311)
T ss_pred cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee
Confidence 7743 3445556655 577777777 6899999999999999874
No 41
>KOG0273|consensus
Probab=97.40 E-value=0.005 Score=51.39 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=73.0
Q ss_pred CeEEEEec-------CCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCC--------
Q psy16019 6 PTMWLGSQ-------NGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDG-------- 67 (121)
Q Consensus 6 ~tvwiGt~-------~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g-------- 67 (121)
+--|++-+ ||.|+||...+ +.+..++. ++..|-+|+|+ ...+..+..||+|-+|++..++
T Consensus 323 DVdW~~~~~F~ts~td~~i~V~kv~~--~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H 400 (524)
T KOG0273|consen 323 DVDWQSNDEFATSSTDGCIHVCKVGE--DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH 400 (524)
T ss_pred ceEEecCceEeecCCCceEEEEEecC--CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh
Confidence 34566544 79999999988 66777774 55899999999 5566667778999999976533
Q ss_pred -----------------------------------CCCCCCceE-EEeCCCCCceeEeeeeCCEEEEEeC---CeEEEEe
Q psy16019 68 -----------------------------------QWDLSKYHT-VTLGLPHHSVRSLAAVYNKVWCGYK---NKIHVVD 108 (121)
Q Consensus 68 -----------------------------------~wd~~~~~~-i~lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~ 108 (121)
.||..++.- .++-.-+.||.++...++.=+.++| ..|.+.+
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 123222211 1221224677777777433333444 4688888
Q ss_pred CCCCcEEEEE
Q psy16019 109 PKSLDVIRPV 118 (121)
Q Consensus 109 ~~tl~i~~~~ 118 (121)
+.++++.|+.
T Consensus 481 ~~~~~l~~s~ 490 (524)
T KOG0273|consen 481 TKTGKLVKSY 490 (524)
T ss_pred ccchheeEee
Confidence 8888777763
No 42
>KOG0275|consensus
Probab=97.32 E-value=0.0014 Score=52.95 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=68.1
Q ss_pred EEEEecCCeEEEEECCcccceeeeeEe--cCCCEEEEEEe----------------------------------------
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCLHSIQ--LKDSVLNIVHV---------------------------------------- 45 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l~~~~--l~~~V~~i~~~---------------------------------------- 45 (121)
+--|++||+|-||.... -+|+.++. +...|+|+.+.
T Consensus 278 lAsGsqDGkIKvWri~t--G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIET--GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred hhccCcCCcEEEEEEec--chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence 34588899999988766 36666663 33566666543
Q ss_pred ----CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeC---CEE-EEEeCCeEEEEeCCCCcEEEE
Q psy16019 46 ----QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY---NKV-WCGYKNKIHVVDPKSLDVIRP 117 (121)
Q Consensus 46 ----~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~---~~l-w~~~gn~I~Vi~~~tl~i~~~ 117 (121)
+.++..|.+||++-||+-....+ ..+++.+....||.++.+.. ..+ -|--.|.|+|++. .+++.|+
T Consensus 356 ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrs 429 (508)
T KOG0275|consen 356 FTDDGHHIISASSDGTVKVWHGKTTEC-----LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRS 429 (508)
T ss_pred EcCCCCeEEEecCCccEEEecCcchhh-----hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEee
Confidence 45789999999999985543321 11222222248888877763 334 4444489999976 7889888
Q ss_pred EE
Q psy16019 118 VT 119 (121)
Q Consensus 118 ~~ 119 (121)
|.
T Consensus 430 fs 431 (508)
T KOG0275|consen 430 FS 431 (508)
T ss_pred ec
Confidence 75
No 43
>KOG0291|consensus
Probab=97.26 E-value=0.0063 Score=53.35 Aligned_cols=119 Identities=17% Similarity=0.189 Sum_probs=89.0
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCC-------CCCCC
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPD-------GQWDL 71 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~-------g~wd~ 71 (121)
|+...+.+.-|+=|..|-+|+.-+. +....++.++.-|+.+.+. +.++.||..||.|++|+-... |.-|+
T Consensus 486 f~~~~~~LaS~SWDkTVRiW~if~s-~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~ 564 (893)
T KOG0291|consen 486 FSPDGSLLASGSWDKTVRIWDIFSS-SGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDL 564 (893)
T ss_pred EccccCeEEeccccceEEEEEeecc-CceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhc
Confidence 3456678888999999999998874 2357788899889999988 779999999999999987642 33344
Q ss_pred CCceE----EEeCC--CCCceeEeeee--CCE-EEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019 72 SKYHT----VTLGL--PHHSVRSLAAV--YNK-VWCGYKNKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 72 ~~~~~----i~lg~--~~~pV~~m~~v--~~~-lw~~~gn~I~Vi~~~tl~i~~~~~~ 120 (121)
..-+. ++-.. ..++.+.|... ++. |.+|..|.|-+++..+.-+.++|++
T Consensus 565 ~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 565 SGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred cccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEe
Confidence 33322 22221 14788888877 444 3456669999999999999999986
No 44
>KOG0279|consensus
Probab=97.19 E-value=0.0091 Score=47.11 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=65.3
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCc-EEEEEcCCCCCCCCCCceEE---EeCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGS-VAIFRRGPDGQWDLSKYHTV---TLGL 81 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~-l~Vy~r~~~g~wd~~~~~~i---~lg~ 81 (121)
...--|.+||.++++++.+ ++++.++..-+.|.++.+.+++-..+.+-|+ |-|| |+++...+ ++..
T Consensus 205 slcasGgkdg~~~LwdL~~--~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIw--------dl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 205 SLCASGGKDGEAMLWDLNE--GKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIW--------DLESKAVVEELKLDG 274 (315)
T ss_pred CEEecCCCCceEEEEEccC--CceeEeccCCCeEeeEEecCCceeEeeccCCceEEE--------eccchhhhhhccccc
Confidence 3344488999999999999 7888988888999999999887555554443 7776 55554332 2211
Q ss_pred -----CCCceeEeeee----CCEEEEEeC-CeEEEE
Q psy16019 82 -----PHHSVRSLAAV----YNKVWCGYK-NKIHVV 107 (121)
Q Consensus 82 -----~~~pV~~m~~v----~~~lw~~~g-n~I~Vi 107 (121)
....++|+... +.+|++|+. |-|.+.
T Consensus 275 ~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 275 IGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred cccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 13467787766 689999999 456554
No 45
>KOG4547|consensus
Probab=97.19 E-value=0.0091 Score=50.56 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=77.1
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeE---ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI---QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYH 75 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~---~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~ 75 (121)
|+..+.-+-+||..|.|.+|+.... +..+.+ .+++.|.+|.... +.+|.+.||+.+..+ +...-.
T Consensus 66 ~s~~t~~lvlgt~~g~v~~ys~~~g--~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~--------~~~~~~ 135 (541)
T KOG4547|consen 66 ASLDTSMLVLGTPQGSVLLYSVAGG--EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYI--------LEKEKV 135 (541)
T ss_pred ccCCceEEEeecCCccEEEEEecCC--eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEE--------ecccce
Confidence 5677788999999999999998873 333333 5778999999654 479999999998886 455544
Q ss_pred EEE---eCCCCCceeEeeeeC-CEEEEEeCCeEEEEeCCCCcEEEEEE
Q psy16019 76 TVT---LGLPHHSVRSLAAVY-NKVWCGYKNKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 76 ~i~---lg~~~~pV~~m~~v~-~~lw~~~gn~I~Vi~~~tl~i~~~~~ 119 (121)
.+. .+. ..+.++.+.. +.+-...+.+|.++|.+|.++...|+
T Consensus 136 ~~~~~~~~~--~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ft 181 (541)
T KOG4547|consen 136 IIRIWKEQK--PLVSSLCISPDGKILLTASRQIKVLDIETKEVVITFT 181 (541)
T ss_pred eeeeeccCC--CccceEEEcCCCCEEEeccceEEEEEccCceEEEEec
Confidence 443 333 4455566554 33333445789999999999999885
No 46
>KOG1539|consensus
Probab=97.17 E-value=0.0013 Score=57.79 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=80.3
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeE----ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI----QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYH 75 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~----~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~ 75 (121)
+.=+|...+|+..|.|-+||..+. -..+++ .+..+|+.+.... ..+..|.++|.+..| |+..-.
T Consensus 457 s~CGNF~~IG~S~G~Id~fNmQSG--i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw--------~f~~k~ 526 (910)
T KOG1539|consen 457 SFCGNFVFIGYSKGTIDRFNMQSG--IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFW--------DFKKKV 526 (910)
T ss_pred eccCceEEEeccCCeEEEEEcccC--eeecccccCccccCceeEEEecCCCceEEEccCcceEEEE--------ecCCcc
Confidence 344678999999999999999994 335566 2336999998764 358889999999987 444433
Q ss_pred ---EEEeCCCCCceeEeeeeC--CEEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019 76 ---TVTLGLPHHSVRSLAAVY--NKVWCGYKN-KIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 76 ---~i~lg~~~~pV~~m~~v~--~~lw~~~gn-~I~Vi~~~tl~i~~~~~ 119 (121)
.+.+|. ++.+|.... +-+..+|.. +|.++|..|.++.|.|.
T Consensus 527 l~~~l~l~~---~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 527 LKKSLRLGS---SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred eeeeeccCC---CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 356666 777888773 667788995 89999999999998774
No 47
>KOG0269|consensus
Probab=97.16 E-value=0.0026 Score=55.66 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=76.9
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceE--
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-- 76 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-- 76 (121)
+..+.+.-|+|||.|-+|+..+ ++...+++-. ++|-+.++. ++..+++-.+|.|-.| |+..|..
T Consensus 144 tep~iliSGSQDg~vK~~DlR~--~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlW--------DlRqp~r~~ 213 (839)
T KOG0269|consen 144 TEPNILISGSQDGTVKCWDLRS--KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLW--------DLRQPDRCE 213 (839)
T ss_pred CCccEEEecCCCceEEEEeeec--ccccccccccchhhhceeeccCCCceEEEecCCceEEEe--------eccCchhHH
Confidence 4456788899999999999998 5666665544 566666654 4455555566777775 8877744
Q ss_pred EEeCCCCCceeEeeeeCCEEEEEeC---CeEEEEeCCCCcEEEEE
Q psy16019 77 VTLGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 77 i~lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~tl~i~~~~ 118 (121)
+++-.-..||-|+-...++.|.|.| .+|.|-|..+.+....+
T Consensus 214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee
Confidence 4444335899999999999999888 47999999876655443
No 48
>KOG0310|consensus
Probab=97.16 E-value=0.012 Score=49.09 Aligned_cols=104 Identities=15% Similarity=0.215 Sum_probs=77.2
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-EEEEEecCCcEEEEEcCCCCCCCCC-CceEE-EeCCCC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-RVVCALADGSVAIFRRGPDGQWDLS-KYHTV-TLGLPH 83 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-~v~v~LanG~l~Vy~r~~~g~wd~~-~~~~i-~lg~~~ 83 (121)
-+.-|+-||.|-+|++.... ....++.+..+|-++++.++ ..+|.-+-..+-|| |+- .-+++ ....-+
T Consensus 168 ivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVW--------Dl~~G~qll~~~~~H~ 238 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVW--------DLTTGGQLLTSMFNHN 238 (487)
T ss_pred EEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEE--------EecCCceehhhhhccc
Confidence 68889999999999998842 45677788889999998877 44444444456665 665 33343 334346
Q ss_pred CceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 84 HSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 84 ~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
+.|+||.+.. .+|..|.= .+|.|||..++++.+++.
T Consensus 239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred ceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence 8999999996 67766555 689999999999999875
No 49
>PTZ00420 coronin; Provisional
Probab=97.15 E-value=0.026 Score=48.38 Aligned_cols=105 Identities=7% Similarity=0.063 Sum_probs=68.1
Q ss_pred EecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCC--CCCCCceEEEeCCCCC
Q psy16019 11 GSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQ--WDLSKYHTVTLGLPHH 84 (121)
Q Consensus 11 Gt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~--wd~~~~~~i~lg~~~~ 84 (121)
|..+|.|.+++... +..+..++ ++++|+++.++. +.++.|..||+|.+|.-..++. .....+ ...+.....
T Consensus 50 GG~~gvI~L~~~~r--~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p-~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMR--KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP-QCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCC--CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccc-eEEeecCCC
Confidence 34466777777654 34566664 458999999974 5788899999999997654321 011111 122322247
Q ss_pred ceeEeeeeC--CEEE-EEeC-CeEEEEeCCCCcEEEEE
Q psy16019 85 SVRSLAAVY--NKVW-CGYK-NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 85 pV~~m~~v~--~~lw-~~~g-n~I~Vi~~~tl~i~~~~ 118 (121)
+|.++.... ..+. .|+. +.|.+.|.++.+...++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i 164 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI 164 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 899999884 3443 3333 78999999998866554
No 50
>PTZ00421 coronin; Provisional
Probab=97.14 E-value=0.025 Score=47.52 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLG 80 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg 80 (121)
.+.+..|+.||.|.||+... .+.+..+. +++.|.++.++ .+.++.|..||+|.+| |+.+.+.+ ++.
T Consensus 138 ~~iLaSgs~DgtVrIWDl~t--g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIw--------D~rsg~~v~tl~ 207 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVER--GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNII--------DPRDGTIVSSVE 207 (493)
T ss_pred CCEEEEEeCCCEEEEEECCC--CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEE--------ECCCCcEEEEEe
Confidence 35788999999999999887 35666665 56899999986 4468888899999998 44443332 232
Q ss_pred CCC--CceeEeeeeC-CEEE-EEeC----CeEEEEeCCCCc
Q psy16019 81 LPH--HSVRSLAAVY-NKVW-CGYK----NKIHVVDPKSLD 113 (121)
Q Consensus 81 ~~~--~pV~~m~~v~-~~lw-~~~g----n~I~Vi~~~tl~ 113 (121)
... ...+++-... +.+. +|.. +.|.+.|..+++
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 211 2233433222 3433 2321 479999988764
No 51
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.14 E-value=0.0077 Score=47.01 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=65.9
Q ss_pred CeEEEEECCcccceeeeeEecC--CCEEEEEEe---------CCEEEEEec---------C-CcEEEEEcCCCCCCCCCC
Q psy16019 15 GSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHV---------QGRVVCALA---------D-GSVAIFRRGPDGQWDLSK 73 (121)
Q Consensus 15 g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~---------~~~v~v~La---------n-G~l~Vy~r~~~g~wd~~~ 73 (121)
..|.+++..+ .+.+.++.++ ..|+|++.. ...+.||.+ . |.|.+|+-...+ +.-..
T Consensus 2 s~i~l~d~~~--~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~-~~~~~ 78 (321)
T PF03178_consen 2 SSIRLVDPTT--FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP-ENNFK 78 (321)
T ss_dssp -EEEEEETTT--SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------E
T ss_pred cEEEEEeCCC--CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc-ccceE
Confidence 4678888776 3567888776 377776653 246777776 3 999999776541 11112
Q ss_pred ceEEEeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCCc-EEE
Q psy16019 74 YHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLD-VIR 116 (121)
Q Consensus 74 ~~~i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~-i~~ 116 (121)
.+.+.--.-+.||.+|...++.|.+|.|++|++++...-+ +.+
T Consensus 79 l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~ 122 (321)
T PF03178_consen 79 LKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLK 122 (321)
T ss_dssp EEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEE
T ss_pred EEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchh
Confidence 2222111114799999999999999999999999887776 443
No 52
>KOG0315|consensus
Probab=97.09 E-value=0.024 Score=44.41 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=72.0
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecC---CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCC-CCCCCceE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQ-WDLSKYHT 76 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~-wd~~~~~~ 76 (121)
+.|.-+..|+++|.|.||++.++ .|.+. -+| .+|.++.-. ...+-++-.-|+..||+--.+.. =.+.+.+-
T Consensus 134 pnQteLis~dqsg~irvWDl~~~--~c~~~-liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k 210 (311)
T KOG0315|consen 134 PNQTELISGDQSGNIRVWDLGEN--SCTHE-LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK 210 (311)
T ss_pred CCcceEEeecCCCcEEEEEccCC--ccccc-cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh
Confidence 46778999999999999999984 33332 234 377777765 33566666669999997654210 01111111
Q ss_pred EEeCCCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCC-cEEEEEE
Q psy16019 77 VTLGLPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSL-DVIRPVT 119 (121)
Q Consensus 77 i~lg~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl-~i~~~~~ 119 (121)
++... .+-.+|++.-+++.-+.|+ ..++|.+.+++ +.|++++
T Consensus 211 ~~ah~-~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~ 255 (311)
T KOG0315|consen 211 FQAHN-GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT 255 (311)
T ss_pred eeccc-ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee
Confidence 23322 3567776666666555555 57999999998 6666654
No 53
>KOG0649|consensus
Probab=97.08 E-value=0.017 Score=45.16 Aligned_cols=107 Identities=18% Similarity=0.282 Sum_probs=77.7
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe-
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL- 79 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l- 79 (121)
..+++..+..||.||-+++++. +....++ ++|-|.|+.- ...++|.|..||++-|| |+...+-++.
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G--~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvW--------d~kt~k~v~~i 194 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDG--RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVW--------DTKTQKHVSMI 194 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCC--EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEE--------eccccceeEEe
Confidence 3456666678999999999883 4444454 5688888876 35699999999999997 5555433322
Q ss_pred C--------CC--CCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019 80 G--------LP--HHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 80 g--------~~--~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~~~ 120 (121)
+ .| ..=|.|++..++=|-||-|++..+.+..+.+....|.+
T Consensus 195 e~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 195 EPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred ccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEec
Confidence 2 12 23466777778888888889999999999888777754
No 54
>KOG0646|consensus
Probab=97.06 E-value=0.013 Score=48.63 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=74.6
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCC-CCCceE-EEe
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWD-LSKYHT-VTL 79 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd-~~~~~~-i~l 79 (121)
...+..||+.|.||+|.+.+. +-+..+.-+ .+|+||++.++ .+|.|.-||.|.||.-..--.=| ..+++- -.+
T Consensus 93 G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred ceEEEeecccCcEEEEEeccc--cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 346777889999999998873 334444323 79999999854 78899999999999764211000 002222 234
Q ss_pred CCCCCceeEeeee----CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019 80 GLPHHSVRSLAAV----YNKVWCGYK-NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 80 g~~~~pV~~m~~v----~~~lw~~~g-n~I~Vi~~~tl~i~~~~ 118 (121)
.+-.-||+.|.+- +.+|+-++. +.+.+.|...+.+..++
T Consensus 171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 4444788887765 357777777 56888888777766554
No 55
>KOG2321|consensus
Probab=97.06 E-value=0.003 Score=53.96 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=47.7
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCC------------CEEEEEEeCC--EEEEEecCCcEEEEEc
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD------------SVLNIVHVQG--RVVCALADGSVAIFRR 63 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~------------~V~~i~~~~~--~v~v~LanG~l~Vy~r 63 (121)
|......+..||++|.+-.|+..+ |....++..+. +|+.|.+.++ .+=||+++|.+.+|.-
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~--ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRD--KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred ecCccceEEecccCceEEEecchh--hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 345677899999999999999887 54444444332 4999999984 6889999999999943
No 56
>KOG0310|consensus
Probab=97.03 E-value=0.0089 Score=49.86 Aligned_cols=102 Identities=23% Similarity=0.254 Sum_probs=77.2
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT 78 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~ 78 (121)
+.+..+..|-++|.+.||+..+ |..+..++ ++++|..++| .++.+|+..+|+.+.-| ||++.-.+ +.
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~-------~d~s~a~v~~~ 148 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKS--RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY-------WDLSTAYVQAE 148 (487)
T ss_pred cCCeEEEccCCcCcEEEecccc--HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE-------EEcCCcEEEEE
Confidence 3456788999999999999555 55566664 4467777776 47899999999999998 78877655 35
Q ss_pred eCCCCCceeEeeee--CCEEEE--EeCCeEEEEeCCCCc
Q psy16019 79 LGLPHHSVRSLAAV--YNKVWC--GYKNKIHVVDPKSLD 113 (121)
Q Consensus 79 lg~~~~pV~~m~~v--~~~lw~--~~gn~I~Vi~~~tl~ 113 (121)
+.....=|||...+ ++.+.+ ||-++|.+.|+.+..
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence 65556889998877 466655 444899999999983
No 57
>KOG0266|consensus
Probab=97.03 E-value=0.035 Score=45.82 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=77.5
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCce--EE-
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYH--TV- 77 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~--~i- 77 (121)
....+.-|+.|+.|.||+... -+++..++.. +.|.++.+. ++.+.+|..||.|.|| |+.... .+
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw--------d~~~~~~~~~~ 326 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW--------DLETGSKLCLK 326 (456)
T ss_pred CCCEEEEecCCCcEEEEeccC--CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE--------ECCCCceeeee
Confidence 346889999999999999987 5788888655 789888876 4567777779999998 444444 11
Q ss_pred EeCCC-CC-ceeEeeee--CCEEEEEeCC-eEEEEeCCCCcEEEEE
Q psy16019 78 TLGLP-HH-SVRSLAAV--YNKVWCGYKN-KIHVVDPKSLDVIRPV 118 (121)
Q Consensus 78 ~lg~~-~~-pV~~m~~v--~~~lw~~~gn-~I~Vi~~~tl~i~~~~ 118 (121)
.+... .. |+++.... ++.++.++.+ .+.+.|..+++..+.+
T Consensus 327 ~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 327 LLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred cccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 22221 12 79998876 5889999986 8999888877666544
No 58
>KOG0281|consensus
Probab=97.02 E-value=0.00076 Score=54.80 Aligned_cols=110 Identities=17% Similarity=0.283 Sum_probs=71.2
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCC------------------
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDG------------------ 67 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g------------------ 67 (121)
.|--|..|..|-||+-++ ..|+..+ -+.++|+|+.|.+.-+..|.+|.++.||.-+.+.
T Consensus 209 kiVSGlrDnTikiWD~n~--~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ 286 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNS--LECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS 286 (499)
T ss_pred hhhcccccCceEEecccc--HHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence 455688888999999887 6777766 4668999999998777778889999998765422
Q ss_pred --------------CCCCCCceEEEe-----CCCCCceeEeeeeCCEEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019 68 --------------QWDLSKYHTVTL-----GLPHHSVRSLAAVYNKVWCGYKN-KIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 68 --------------~wd~~~~~~i~l-----g~~~~pV~~m~~v~~~lw~~~gn-~I~Vi~~~tl~i~~~~~ 119 (121)
.||..+|.-+++ |. ...|......++-+--|+|+ .|.+-+..|++..+.+.
T Consensus 287 ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~ 357 (499)
T KOG0281|consen 287 NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLN 357 (499)
T ss_pred CCEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeeccccceEEEecCCceEEEEeccceeeehhhh
Confidence 355555533211 11 13333333334444456664 57777777777666543
No 59
>KOG0268|consensus
Probab=96.99 E-value=0.0062 Score=49.61 Aligned_cols=110 Identities=19% Similarity=0.281 Sum_probs=81.3
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCCEEEEEecCCcEEEEEcC--------------------
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQGRVVCALADGSVAIFRRG-------------------- 64 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~-------------------- 64 (121)
.++..|+-||.+-||++.+ +.|.++++-. +.|..|.+..+.+|-+..|-+|-.|.-.
T Consensus 80 s~~aSGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhh--hhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 5788999999999999999 7899999876 6999999998888888888877776510
Q ss_pred ------CCC----CCCCCC--c-eEEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019 65 ------PDG----QWDLSK--Y-HTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 65 ------~~g----~wd~~~--~-~~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~ 119 (121)
+.| .||... | +.++.|. ..|.|+..+ +..+-++|+ +.|.++|+.+.++.++.-
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~--Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi 227 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGA--DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI 227 (433)
T ss_pred ccccccccCceeeecccccCCccceeecCC--CceeEEecCCCcchheeeeccCCceEEEecccCCccceee
Confidence 012 466532 2 3356666 456666555 566666665 789999999999887653
No 60
>KOG3881|consensus
Probab=96.98 E-value=0.0095 Score=48.68 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=81.8
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEE--EeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEE--e
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIV--HVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT--L 79 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~--~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~--l 79 (121)
+..+-.+|..+.+-+|+.... |+++.+|... .+++++- +..+.||+|-+-|.|+.| |+..-+++- +
T Consensus 216 ~~~fat~T~~hqvR~YDt~~q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F--------D~r~~kl~g~~~ 286 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQ-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF--------DLRGGKLLGCGL 286 (412)
T ss_pred CceEEEEecceeEEEecCccc-CcceeEeccccCcceeeeecCCCcEEEEecccchhhee--------cccCceeecccc
Confidence 667888999999999998743 6788888654 5666654 568899999999999999 777777753 3
Q ss_pred CCCCCceeEeeeeCC-EEEEEeC--CeEEEEeCCCCcEEE
Q psy16019 80 GLPHHSVRSLAAVYN-KVWCGYK--NKIHVVDPKSLDVIR 116 (121)
Q Consensus 80 g~~~~pV~~m~~v~~-~lw~~~g--n~I~Vi~~~tl~i~~ 116 (121)
+.-.-+||++....+ .+-++|| -.+.|+|..|.++.+
T Consensus 287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 333578999988865 8999999 469999999976654
No 61
>KOG0283|consensus
Probab=96.96 E-value=0.023 Score=49.72 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=83.4
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL 81 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~ 81 (121)
.+.+.-.+-|..+-+|.... ++||+.|.++|-|||+.++ +++..-|.-||.+-+| ++.+.+++---+
T Consensus 380 n~fLLSSSMDKTVRLWh~~~--~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiW--------sI~d~~Vv~W~D 449 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGR--KECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLW--------SISDKKVVDWND 449 (712)
T ss_pred CCeeEeccccccEEeecCCC--cceeeEEecCCeeEEEEecccCCCcEeecccccceEEe--------ecCcCeeEeehh
Confidence 34566667788889998886 7899999999999999997 5678888999999996 677777765444
Q ss_pred CCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEEeC
Q psy16019 82 PHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVTIR 121 (121)
Q Consensus 82 ~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~~ 121 (121)
-.+=|+.+.+. ++-.-+|+= ...+++++..++.+..+++.
T Consensus 450 l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 450 LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 44566666655 444555665 68999999999999988863
No 62
>KOG0306|consensus
Probab=96.96 E-value=0.0097 Score=52.21 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=76.4
Q ss_pred CCCCeEEEEecCCeEEEEECCcc-----cc-e-----eeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCC
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQ-----WR-R-----CLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQW 69 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~-----~~-~-----~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~w 69 (121)
+.+.-.-.|+-|..+-+|+..-. .+ | ...++.+++.|+|+.+. +..+.|||-|.++-||
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy-------- 535 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY-------- 535 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE--------
Confidence 44555667888889988873321 11 2 12567899999999999 5589999999999999
Q ss_pred CCCCceE-EEeCCCCCceeEeeeeC-CEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019 70 DLSKYHT-VTLGLPHHSVRSLAAVY-NKVWCGYK--NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 70 d~~~~~~-i~lg~~~~pV~~m~~v~-~~lw~~~g--n~I~Vi~~~tl~i~~~~ 118 (121)
-+++.++ +++=--.-||+||-+.. +++-+.|+ .+|.|--..=++-.++|
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh
Confidence 4667766 56633348999999994 55666555 56887766555555554
No 63
>KOG2055|consensus
Probab=96.96 E-value=0.011 Score=49.28 Aligned_cols=100 Identities=13% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
+..++.+-+...+|.|++..+.+ ++-+.++++++.|.++++. ...+++..++|.|.|| |+..++.+.-
T Consensus 312 Shd~~fia~~G~~G~I~lLhakT--~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~--------nl~~~~~~~r 381 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGHIHLLHAKT--KELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW--------NLRQNSCLHR 381 (514)
T ss_pred cCCCCeEEEcccCceEEeehhhh--hhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE--------ecCCcceEEE
Confidence 55678999999999999988887 6778999999999999886 4589999999999997 6766655422
Q ss_pred ----CCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCC
Q psy16019 80 ----GLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKS 111 (121)
Q Consensus 80 ----g~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~t 111 (121)
|.....=-|+.+.+.-|++|+. .-|-|+|-++
T Consensus 382 f~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 382 FVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 2211222244455664444444 3466776443
No 64
>KOG1188|consensus
Probab=96.94 E-value=0.0053 Score=49.47 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=76.4
Q ss_pred CCeEEEEec----CCeEEEEECCcccceeeeeE--ecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019 5 LPTMWLGSQ----NGSVFVHSAVSQWRRCLHSI--QLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYH 75 (121)
Q Consensus 5 ~~tvwiGt~----~g~I~v~~~~~~~~~~l~~~--~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~ 75 (121)
.+.+..||| +-.+++|+.... ++.+..+ .+.|-|++++++ .|.+..|..||.+.+|.-+.+..-| .=.+
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~-qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD-aL~~ 206 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSE-QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED-ALLH 206 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccc-cchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchh-hHHH
Confidence 356788887 668889998873 3335555 456899999997 5789999999999999776652111 0013
Q ss_pred EEEeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 76 TVTLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 76 ~i~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
+|..+. +|.++...+ +++||=.- ....+.+.+.+.-+.+++
T Consensus 207 viN~~s---SI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 207 VINHGS---SIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred hhcccc---eeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 345444 788888775 47888776 577777777776554443
No 65
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.90 E-value=0.025 Score=47.85 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecC--CCEEE----------EEEeCCEEEEEecCCcEEEEEcCCCC-CCCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLN----------IVHVQGRVVCALADGSVAIFRRGPDG-QWDL 71 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~----------i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~ 71 (121)
.++|++++.+|.|+-+++.+ -+.++++... ..+.. +.+.+++||++..||.|..++...+. .|+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~T--Gk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKT--GKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCC--CceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 56899999999999999776 3667776542 22221 35667899999999999999876543 4765
Q ss_pred CCceEEEeCCCCCcee-EeeeeCCEEEEEeC-------CeEEEEeCCCCcEEEEEE
Q psy16019 72 SKYHTVTLGLPHHSVR-SLAAVYNKVWCGYK-------NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 72 ~~~~~i~lg~~~~pV~-~m~~v~~~lw~~~g-------n~I~Vi~~~tl~i~~~~~ 119 (121)
..... .. ..++. .-.+.++.|+++.+ ..|+.+|++|+++.=++.
T Consensus 147 ~~~~~-~~---~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNGDY-KA---GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccc-cc---cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 43110 00 01222 22445788888763 589999999999875543
No 66
>KOG0281|consensus
Probab=96.89 E-value=0.003 Score=51.44 Aligned_cols=111 Identities=22% Similarity=0.252 Sum_probs=83.6
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCC-------------------
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPD------------------- 66 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~------------------- 66 (121)
.+--|+.|..|.||+.+. .++++++- +.++|+-+.+.++.+....-|-+++||+-.+-
T Consensus 249 viisGSSDsTvrvWDv~t--ge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV 326 (499)
T KOG0281|consen 249 VIVSGSSDSTVRVWDVNT--GEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 326 (499)
T ss_pred EEEecCCCceEEEEeccC--CchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence 455688999999999888 67888874 45999999999999999999999999986540
Q ss_pred ----------------CCCCCCCceEE-EeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 67 ----------------GQWDLSKYHTV-TLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 67 ----------------g~wd~~~~~~i-~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
..|+...-+.+ ++..-...|.|+...+.-+--|++ |.|.++|++.+...+.+|
T Consensus 327 dfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 327 DFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred ccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHh
Confidence 13555554443 222224678887777777777777 899999999988766543
No 67
>KOG0278|consensus
Probab=96.89 E-value=0.014 Score=45.82 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=76.4
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCc
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHS 85 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~p 85 (121)
.++.-.++++.+.+|+... -+..+++.++.+|+++.++.+-=++-.|+|.=..| ||.++..+++==+-++-
T Consensus 156 ~~iLSSadd~tVRLWD~rT--gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~F-------wdaksf~~lKs~k~P~n 226 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRT--GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKF-------WDAKSFGLLKSYKMPCN 226 (334)
T ss_pred ceEEeeccCCceEEEEecc--CcEEEEEecCCCCcceeeccCCCEEEEecCceeEE-------eccccccceeeccCccc
Confidence 3455568899999999887 47799999999999999988777888999988888 89888888754443366
Q ss_pred eeEeeeeC-CEEEEEeCC--eEEEEeCCCCcEE
Q psy16019 86 VRSLAAVY-NKVWCGYKN--KIHVVDPKSLDVI 115 (121)
Q Consensus 86 V~~m~~v~-~~lw~~~gn--~I~Vi~~~tl~i~ 115 (121)
|.+-.+.. ++++++-|+ .++.+|-.|++-.
T Consensus 227 V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred cccccccCCCceEEecCcceEEEEEeccCCcee
Confidence 66655553 455555553 7899998887643
No 68
>KOG2106|consensus
Probab=96.89 E-value=0.015 Score=49.12 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=74.4
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHH 84 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~ 84 (121)
+++....+|+.+.+|+ + +|.+++...-+++.|.-++ .+-|-+|.+.|...|+ |.+...++++..-++
T Consensus 381 ~q~~T~gqdk~v~lW~--~--~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~--------d~e~~~lv~~~~d~~ 448 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--D--HKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVL--------DTETQDLVTIHTDNE 448 (626)
T ss_pred hheeeccCcceEEEcc--C--CceeEEEEecCceeEeeccCcceEEEeeccceEEEE--------ecccceeEEEEecCC
Confidence 3455667899999999 4 6788998888999888876 3578899999999999 677776766655468
Q ss_pred ceeEeeee--CCEEEEEeC-CeEEEE--eCCCCcE
Q psy16019 85 SVRSLAAV--YNKVWCGYK-NKIHVV--DPKSLDV 114 (121)
Q Consensus 85 pV~~m~~v--~~~lw~~~g-n~I~Vi--~~~tl~i 114 (121)
|+.+|... +..|..|+. |.|+++ +....+.
T Consensus 449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 449 QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence 99999877 688999999 556554 4444443
No 69
>KOG2110|consensus
Probab=96.88 E-value=0.019 Score=46.63 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=65.2
Q ss_pred CeEEEEECCcccceeeeeEe-cCC---CEEEEEEeCCEEEEEec----CCcEEEEEcCCCCCCCCCCceEEEeCCCCCce
Q psy16019 15 GSVFVHSAVSQWRRCLHSIQ-LKD---SVLNIVHVQGRVVCALA----DGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSV 86 (121)
Q Consensus 15 g~I~v~~~~~~~~~~l~~~~-l~~---~V~~i~~~~~~v~v~La----nG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV 86 (121)
++||||+..+ .|.++++. .|. .+..+-.+.+.-|.|.- .|.|.+|+-. ++.+..+|.... .|+
T Consensus 106 e~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-----nl~~v~~I~aH~--~~l 176 (391)
T KOG2110|consen 106 ESIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-----NLQPVNTINAHK--GPL 176 (391)
T ss_pred ccEEEEeccc--ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc-----cceeeeEEEecC--Cce
Confidence 4599999999 58889884 333 45455555544455543 4899999322 233445567666 899
Q ss_pred eEeeee--CCEEEEEeCC--eEEEEeCCCCcEEEEE
Q psy16019 87 RSLAAV--YNKVWCGYKN--KIHVVDPKSLDVIRPV 118 (121)
Q Consensus 87 ~~m~~v--~~~lw~~~gn--~I~Vi~~~tl~i~~~~ 118 (121)
.||+.. +.-|+-|+-+ -|+||...+++...+|
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 999998 3445555553 5999999999988877
No 70
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.87 E-value=0.04 Score=44.61 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=72.4
Q ss_pred CCCCCeEEEEec--CCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 2 TSVLPTMWLGSQ--NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 2 ~~~~~tvwiGt~--~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
+.....+|+..+ +..+.|+++.. ++.+.++..|+...=....+..-++-+.||.+..+....+|.- ..+...+
T Consensus 113 s~dgk~l~V~n~~p~~~V~VvD~~~--~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~---~~~~~~v 187 (352)
T TIGR02658 113 TPDNKTLLFYQFSPSPAVGVVDLEG--KAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP---KIKPTEV 187 (352)
T ss_pred CCCCCEEEEecCCCCCEEEEEECCC--CcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce---EEeeeee
Confidence 345567887773 57888888888 7889999999876555566777778899999999988777751 1222333
Q ss_pred --C--CC--CCceeEeee-eCCEEEEEeCCeEEEEeC
Q psy16019 80 --G--LP--HHSVRSLAA-VYNKVWCGYKNKIHVVDP 109 (121)
Q Consensus 80 --g--~~--~~pV~~m~~-v~~~lw~~~gn~I~Vi~~ 109 (121)
+ +| ..| .... -++.+|.++.++|++||.
T Consensus 188 f~~~~~~v~~rP--~~~~~dg~~~~vs~eG~V~~id~ 222 (352)
T TIGR02658 188 FHPEDEYLINHP--AYSNKSGRLVWPTYTGKIFQIDL 222 (352)
T ss_pred ecCCccccccCC--ceEcCCCcEEEEecCCeEEEEec
Confidence 3 11 356 2233 478899999999999993
No 71
>KOG2111|consensus
Probab=96.87 E-value=0.057 Score=43.30 Aligned_cols=99 Identities=10% Similarity=0.222 Sum_probs=66.3
Q ss_pred CeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCC--------------C-------------
Q psy16019 15 GSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPD--------------G------------- 67 (121)
Q Consensus 15 g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~--------------g------------- 67 (121)
.++.||+-.. ++++.++....+|..++...+++.|.|.+ .+-||.-..+ |
T Consensus 75 NkviIWDD~k--~~~i~el~f~~~I~~V~l~r~riVvvl~~-~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 75 NKVIIWDDLK--ERCIIELSFNSEIKAVKLRRDRIVVVLEN-KIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred ceEEEEeccc--CcEEEEEEeccceeeEEEcCCeEEEEecC-eEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 3678888333 45777888888888888888888887776 6667655421 0
Q ss_pred ---------------CCCCC-CceEEEeCCCCCceeEeeee-CCEEEEEeC-C--eEEEEeCCCCcEEEEE
Q psy16019 68 ---------------QWDLS-KYHTVTLGLPHHSVRSLAAV-YNKVWCGYK-N--KIHVVDPKSLDVIRPV 118 (121)
Q Consensus 68 ---------------~wd~~-~~~~i~lg~~~~pV~~m~~v-~~~lw~~~g-n--~I~Vi~~~tl~i~~~~ 118 (121)
.|+-. +|.+|.-.+ .+|.||++. .+.+-+.++ + -|.|+|+.+++...+|
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHD--SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee
Confidence 01111 233344444 799999999 466655554 3 5999999999988765
No 72
>KOG0647|consensus
Probab=96.85 E-value=0.014 Score=46.60 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=72.6
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-E-EeCCC-C
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-V-TLGLP-H 83 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i-~lg~~-~ 83 (121)
.+-.|+=|..|-.|+..+ .+.+.+++||+.|.++-.....+.||+|+-.|+|| +++++.+ . ...+| .
T Consensus 129 cl~TGSWDKTlKfWD~R~--~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy--------nL~n~~te~k~~~SpLk 198 (347)
T KOG0647|consen 129 CLVTGSWDKTLKFWDTRS--SNPVATLQLPERVYAADVLYPMAVVATAERHIAVY--------NLENPPTEFKRIESPLK 198 (347)
T ss_pred eeEecccccceeecccCC--CCeeeeeeccceeeehhccCceeEEEecCCcEEEE--------EcCCCcchhhhhcCccc
Confidence 455677788999999887 57899999999999988888899999999999999 4544433 1 23333 4
Q ss_pred CceeEeeeeC---CEEEEEeCCeEEEEeCCCCcEEEEE
Q psy16019 84 HSVRSLAAVY---NKVWCGYKNKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 84 ~pV~~m~~v~---~~lw~~~gn~I~Vi~~~tl~i~~~~ 118 (121)
.-+||++... +.+-.+-..++.|...+....+..|
T Consensus 199 ~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 199 WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 5788888773 3323333367877776664334444
No 73
>KOG0639|consensus
Probab=96.79 E-value=0.0034 Score=53.08 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=75.8
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEec--CC-CEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KD-SVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV- 77 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~-~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i- 77 (121)
.+...|+.+|.|-..+.||++..+..+....+.. |+ .-+.|--..+-.|+.++||+|+|| |+.+..++
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vw--------DLhnq~~Vr 545 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW--------DLHNQTLVR 545 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE--------Ecccceeee
Confidence 4577899999999999999988865443333322 11 223344456678999999999996 88887664
Q ss_pred EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCc
Q psy16019 78 TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLD 113 (121)
Q Consensus 78 ~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~ 113 (121)
.+.--+.-+.||.+. +.+||-|-= |.|..-|..+..
T Consensus 546 qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence 454335789999999 799998654 889888877643
No 74
>KOG1963|consensus
Probab=96.77 E-value=0.021 Score=50.37 Aligned_cols=108 Identities=12% Similarity=0.240 Sum_probs=77.6
Q ss_pred CCCCCeEEEEecCCeEEEEECCc--ccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVS--QWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT 76 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~--~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~ 76 (121)
+..+..+-.|--||+|+||.--. ..+..-+.++ +.+.|.++.+. +.++|.|..-|.|++|+... ..+++
T Consensus 214 spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T------~~kqf 287 (792)
T KOG1963|consen 214 SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET------GKKQF 287 (792)
T ss_pred ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC------CCccc
Confidence 44455666777899999987444 2222344454 34888888875 56899999999999997643 33455
Q ss_pred E-EeCCCCCceeEeeeeC-CEEEE-EeC-CeEEEEeCCCCcEEEEE
Q psy16019 77 V-TLGLPHHSVRSLAAVY-NKVWC-GYK-NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 77 i-~lg~~~~pV~~m~~v~-~~lw~-~~g-n~I~Vi~~~tl~i~~~~ 118 (121)
+ ++|. ||+.+.... +.+++ -++ |+|.+|.+.+++++.++
T Consensus 288 LPRLgs---~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 288 LPRLGS---PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI 330 (792)
T ss_pred ccccCC---eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence 5 5666 899888874 45544 556 89999999999998765
No 75
>KOG0299|consensus
Probab=96.76 E-value=0.025 Score=47.09 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=81.0
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCC-----------CC
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGP-----------DG 67 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~-----------~g 67 (121)
++.+..+-.|..|..|+||++.+ .+.++.++ +.++|.++.+.. +++|++.+|.++.+|.-+. ++
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t--~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDT--LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcc--cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 67778888899999999999998 45666665 458999998875 4899999999999997654 11
Q ss_pred -----------------------CCCCCCc-eEEEeCCCCCceeEeeeeC-CEEEEEeCC-eEEEEeCCCCcEEEEE
Q psy16019 68 -----------------------QWDLSKY-HTVTLGLPHHSVRSLAAVY-NKVWCGYKN-KIHVVDPKSLDVIRPV 118 (121)
Q Consensus 68 -----------------------~wd~~~~-~~i~lg~~~~pV~~m~~v~-~~lw~~~gn-~I~Vi~~~tl~i~~~~ 118 (121)
.|++.+- ++|--|. ..++-|.+.++ .++--|+.| .|..-+....++..+.
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~-~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG-EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred eeeechhcccceEEeccccceeEEEeccccceeeeeCC-CCCeeeEEEecccceeeccCCceEEEeeecccCceeEe
Confidence 2444222 2232222 34888888886 556667775 6888877776665443
No 76
>KOG1273|consensus
Probab=96.74 E-value=0.039 Score=44.50 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=70.6
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCc--eEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKY--HTV 77 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~--~~i 77 (121)
+....+...+.|-+|-.|++.+. .++++++.+++|..-.++ .|.+.|..-+-.=.+. ++.+| .++
T Consensus 75 ~dgr~LltsS~D~si~lwDl~~g--s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi--------~~s~~~h~~L 144 (405)
T KOG1273|consen 75 RDGRKLLTSSRDWSIKLWDLLKG--SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVI--------DFSDPKHSVL 144 (405)
T ss_pred CCCCEeeeecCCceeEEEeccCC--CceeEEEccCccceeeeccccCCeEEEEEecCCcEEE--------EecCCceeec
Confidence 44556777788888889998874 589999999999987776 3445554444331111 12222 223
Q ss_pred EeCCC---CCceeE--eeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 78 TLGLP---HHSVRS--LAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 78 ~lg~~---~~pV~~--m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
+..++ +..-+| ....++.++.|.+ +++.|+|++|+++..+|.+
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri 193 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI 193 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee
Confidence 33332 122222 2223688999999 6999999999999998864
No 77
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.71 E-value=0.023 Score=47.33 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=69.8
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCC-------EE--EEEEeC-CEEEEEecCCcEEEEEcCCCC-CCCCCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDS-------VL--NIVHVQ-GRVVCALADGSVAIFRRGPDG-QWDLSK 73 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~-------V~--~i~~~~-~~v~v~LanG~l~Vy~r~~~g-~wd~~~ 73 (121)
.++|++++.+|.++.+++.+. +.+++.+.... +. -..+.+ ++||++..+|.|..++..++. .|..+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 467899999999999998763 55666554321 11 112345 899999999999999776543 465443
Q ss_pred ceE----EEeCCCCCceeEeeeeCCEEEEEeC----------CeEEEEeCCCCcEEEEEE
Q psy16019 74 YHT----VTLGLPHHSVRSLAAVYNKVWCGYK----------NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 74 ~~~----i~lg~~~~pV~~m~~v~~~lw~~~g----------n~I~Vi~~~tl~i~~~~~ 119 (121)
... ..+.. .| .+.++.++.+.+ ..++.||++|++..=+++
T Consensus 139 ~~~~~~~~~i~s--sP----~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 139 NDQVPPGYTMTG--AP----TIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CCCcCcceEecC--CC----EEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 211 11222 22 344567776652 579999999999876654
No 78
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.70 E-value=0.03 Score=46.65 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=73.0
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEe------------------cCCcEEEEEcCCCC-
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCAL------------------ADGSVAIFRRGPDG- 67 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~L------------------anG~l~Vy~r~~~g- 67 (121)
.|.+|+.+|.++.++..+- +.+++..... ..+....+.||++. .+|.|..++...+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG--~~~W~~~~~~--~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~ 378 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTG--KLISARPEVE--QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV 378 (488)
T ss_pred EEEEECCCceEEEEECCCC--cEeeEeEeec--cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence 6899999999999998773 5666655431 01223347888864 36888888765543
Q ss_pred CCCCCCceE---EEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 68 QWDLSKYHT---VTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 68 ~wd~~~~~~---i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
.|..+.... ..+|.| ..-..++..++.|++|+. ..++.||++|+++.-++++
T Consensus 379 ~W~~~~~~~~~~~~~g~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 379 VWEKREGTIRDSWNIGFP-HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred eeEeeCCccccccccCCc-ccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 476544311 122232 112346677899999887 6899999999999887764
No 79
>KOG2048|consensus
Probab=96.67 E-value=0.012 Score=50.93 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=74.4
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCC-CCCCCceEEEeCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQ-WDLSKYHTVTLGL 81 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~-wd~~~~~~i~lg~ 81 (121)
+|+--|-..|.+.+|+.... ...+++++. +-|+||... +++||.|.+||.+.-|++...+. |-..+++..
T Consensus 216 ~tI~sgDS~G~V~FWd~~~g--TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~---- 289 (691)
T KOG2048|consen 216 STIASGDSAGTVTFWDSIFG--TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL---- 289 (691)
T ss_pred CcEEEecCCceEEEEcccCc--chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC----
Confidence 46667778899999997763 446677655 689999976 46999999999999999987654 654444442
Q ss_pred CCCceeEeeeeCCEEEEEeCCeEEEEeC
Q psy16019 82 PHHSVRSLAAVYNKVWCGYKNKIHVVDP 109 (121)
Q Consensus 82 ~~~pV~~m~~v~~~lw~~~gn~I~Vi~~ 109 (121)
+..-||||++.++.+..|-.....++.+
T Consensus 290 h~hdvrs~av~~~~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 290 HAHDVRSMAVIENALISGGRDFTLAICS 317 (691)
T ss_pred CcccceeeeeecceEEecceeeEEEEcc
Confidence 2377999999999888877777766644
No 80
>KOG2055|consensus
Probab=96.67 E-value=0.06 Score=45.04 Aligned_cols=108 Identities=9% Similarity=0.086 Sum_probs=74.2
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG 80 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg 80 (121)
.+.+.++..||.+.||......+..++++.+. -|+.+-.+..+ ++|++.-.--+..|.-. .-++.+++
T Consensus 225 ~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle--------~ak~~k~~ 296 (514)
T KOG2055|consen 225 APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE--------TAKVTKLK 296 (514)
T ss_pred CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc--------cccccccc
Confidence 45788899999999999888655678999887 47877776532 67777777677777443 22222221
Q ss_pred CC---------------------------------------------CCceeEeeee--CCEEEEEeC-CeEEEEeCCCC
Q psy16019 81 LP---------------------------------------------HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSL 112 (121)
Q Consensus 81 ~~---------------------------------------------~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl 112 (121)
.| +..|+.++.. +++||+.++ ..|+|+|.++.
T Consensus 297 ~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 297 PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN 376 (514)
T ss_pred CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc
Confidence 11 1234444444 478888877 68999999999
Q ss_pred cEEEEEEe
Q psy16019 113 DVIRPVTI 120 (121)
Q Consensus 113 ~i~~~~~~ 120 (121)
.++|+|..
T Consensus 377 ~~~~rf~D 384 (514)
T KOG2055|consen 377 SCLHRFVD 384 (514)
T ss_pred ceEEEEee
Confidence 99888864
No 81
>KOG0649|consensus
Probab=96.63 E-value=0.041 Score=43.07 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=75.1
Q ss_pred CCeEEEEecCCeEEEEECCcccc--------eeeeeEecC-CCEEEEEEeCCEEEEEecCCcEEEEEcCCC-------CC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWR--------RCLHSIQLK-DSVLNIVHVQGRVVCALADGSVAIFRRGPD-------GQ 68 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~--------~~l~~~~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~-------g~ 68 (121)
...+..|..+|.|.|+++.+-.+ +..-..+-. .+|.++++++..+ ...+||.+.-+.=+.. ..
T Consensus 22 ~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~l 100 (325)
T KOG0649|consen 22 KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRL 100 (325)
T ss_pred ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhh
Confidence 34688999999999999766422 112222333 5999999998654 5556799887764421 24
Q ss_pred CCCCCceEE-EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 69 WDLSKYHTV-TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 69 wd~~~~~~i-~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
|....|.-. .+..| -|..|.+. ++.+..+-| ..++-.|.++++|++.|.
T Consensus 101 we~~~P~~~~~~evP--eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVP--EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred hhhcCccccCcccCC--ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence 777666443 22222 36677766 566655557 689999999999999874
No 82
>KOG0308|consensus
Probab=96.63 E-value=0.0093 Score=51.51 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=72.3
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceE-E
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHT-V 77 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i 77 (121)
+..+.++.-|+.||.|-+|++.. ++|++++.++ +.|=.+.... ..||.|..||.|..= |+.+|.- .
T Consensus 222 ~dDGt~~ls~sSDgtIrlWdLgq--QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T--------dl~n~~~~t 291 (735)
T KOG0308|consen 222 NDDGTRLLSASSDGTIRLWDLGQ--QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT--------DLRNPAKST 291 (735)
T ss_pred cCCCCeEeecCCCceEEeeeccc--cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEec--------ccCCchhhe
Confidence 34566888899999999999999 7899999888 7888888764 479999999998775 6777633 2
Q ss_pred EeCCCCCceeEeeee--CCEEEEEeCC
Q psy16019 78 TLGLPHHSVRSLAAV--YNKVWCGYKN 102 (121)
Q Consensus 78 ~lg~~~~pV~~m~~v--~~~lw~~~gn 102 (121)
-+-.+..||..|... ++.+|++..+
T Consensus 292 lick~daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 292 LICKEDAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred EeecCCCchhhhhhccccCCceeeecc
Confidence 334455899999988 4778998874
No 83
>KOG0278|consensus
Probab=96.62 E-value=0.0063 Score=47.68 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=78.2
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL 79 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l 79 (121)
..+.+..|.++.-+.||+.+.+ +-+...+ ..|.+|-...+ .+..++.+.-|++|-.| |...-..+ ++
T Consensus 111 ds~~lltgg~ekllrvfdln~p-~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW--------D~rTgt~v~sL 181 (334)
T KOG0278|consen 111 DSNYLLTGGQEKLLRVFDLNRP-KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLW--------DHRTGTEVQSL 181 (334)
T ss_pred cchhhhccchHHHhhhhhccCC-CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEE--------EeccCcEEEEE
Confidence 3456778888888889998874 2345555 56777776554 46667777788999887 44443332 33
Q ss_pred CCCCCceeEeeee--CCEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019 80 GLPHHSVRSLAAV--YNKVWCGYKNKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 80 g~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl~i~~~~~~ 120 (121)
..+ .||++|.+. +.-|=.++|..|...|+.++++.+++++
T Consensus 182 ~~~-s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~ 223 (334)
T KOG0278|consen 182 EFN-SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM 223 (334)
T ss_pred ecC-CCCcceeeccCCCEEEEecCceeEEeccccccceeeccC
Confidence 333 699999988 4678889999999999999999998764
No 84
>KOG0296|consensus
Probab=96.58 E-value=0.061 Score=43.83 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=71.1
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL 81 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~ 81 (121)
...+..|++||.++.|+..+ +...+.+. ...+++|=++. +.+++.|-.||+|.+|...+. ..+++++.
T Consensus 160 a~illAG~~DGsvWmw~ip~--~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-------~p~~~~~~ 230 (399)
T KOG0296|consen 160 AHILLAGSTDGSVWMWQIPS--QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-------QPLHKITQ 230 (399)
T ss_pred ccEEEeecCCCcEEEEECCC--cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-------ceeEEecc
Confidence 45788899999999999988 34445553 33677776654 569999999999999854432 22344442
Q ss_pred C-CCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019 82 P-HHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 82 ~-~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~ 118 (121)
. ..+..||.... ..+-.|+. ..+++.+..++++...+
T Consensus 231 ~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 231 AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred cccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 1 35666777663 44444444 57888888888877654
No 85
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.57 E-value=0.21 Score=38.67 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=62.0
Q ss_pred CCCCeEEEEec-CCeEEEEECCcc--cceeeeeEecCCCEEEEEEe--CCEEEEEe-cCCcEEEEEcCCCCCCCCCCceE
Q psy16019 3 SVLPTMWLGSQ-NGSVFVHSAVSQ--WRRCLHSIQLKDSVLNIVHV--QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHT 76 (121)
Q Consensus 3 ~~~~tvwiGt~-~g~I~v~~~~~~--~~~~l~~~~l~~~V~~i~~~--~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~ 76 (121)
.....++++.. ++.|.+|+..+. ..+.+..+.......++... ..++||+. .++.|.||+-+.+|.-.......
T Consensus 89 ~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 89 HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 44567888775 889999998642 11223333222234444444 44787665 45999999876554322111222
Q ss_pred EE--eCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCC
Q psy16019 77 VT--LGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPK 110 (121)
Q Consensus 77 i~--lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~ 110 (121)
++ .|. . .|.|.+. ++.+|+++. +.|.+++.+
T Consensus 169 ~~~~~g~--~-p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 169 VTTVEGA--G-PRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred eecCCCC--C-CceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 33 233 3 3556655 468999986 899998876
No 86
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=96.57 E-value=0.09 Score=37.27 Aligned_cols=104 Identities=10% Similarity=0.106 Sum_probs=64.8
Q ss_pred CCCCCeEEEEecCCeEEEEECCccc------ceeeeeEecCCCEEEEEEe-------CCEEEEEecCCcEEEEEcCCCCC
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQW------RRCLHSIQLKDSVLNIVHV-------QGRVVCALADGSVAIFRRGPDGQ 68 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~------~~~l~~~~l~~~V~~i~~~-------~~~v~v~LanG~l~Vy~r~~~g~ 68 (121)
+...|.+-.+|.-|+|+||+..+.. ...+..+++...|++|..- .+.+++|.++ +|.+|.-
T Consensus 7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV----- 80 (136)
T PF14781_consen 7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV----- 80 (136)
T ss_pred CCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc-----
Confidence 4567899999999999999977642 2356778889999999753 4678999888 6777843
Q ss_pred CCCCCceEEEeCCCCCceeEeeee-----CCEEEEEeC-CeEEEEeCCCCcE
Q psy16019 69 WDLSKYHTVTLGLPHHSVRSLAAV-----YNKVWCGYK-NKIHVVDPKSLDV 114 (121)
Q Consensus 69 wd~~~~~~i~lg~~~~pV~~m~~v-----~~~lw~~~g-n~I~Vi~~~tl~i 114 (121)
.+-+-+=--+.+.-|++|.+- ...|..--| +.|.-||.+--++
T Consensus 81 ---~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 81 ---ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred ---ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 332221000111355555442 233333333 4677777665544
No 87
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.57 E-value=0.014 Score=47.24 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=56.1
Q ss_pred eeeeeEecCCCEEEEEEeC--CEEEEE----ecCCcEEEEEcCCCCCCCCCCceEE-EeCC-CCCceeEeeee--CCEEE
Q psy16019 28 RCLHSIQLKDSVLNIVHVQ--GRVVCA----LADGSVAIFRRGPDGQWDLSKYHTV-TLGL-PHHSVRSLAAV--YNKVW 97 (121)
Q Consensus 28 ~~l~~~~l~~~V~~i~~~~--~~v~v~----LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~-~~~pV~~m~~v--~~~lw 97 (121)
|.+++++++..-+=++.++ .++||. -.+++|.|| |.++.+.+ ++.. +..++..|... ++++|
T Consensus 260 kvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~vi--------D~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 260 KVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVI--------DKKTLKVVKTITPGPGKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp SEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEE--------ECCGTEEEE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred eEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEE--------ECcCcceeEEEeccCCCcEeccEECCCCCEEE
Confidence 5688888885446777664 489998 344889999 67776653 4432 12456677777 69999
Q ss_pred EEeC--C-eEEEEeCCCCcEEEEEEe
Q psy16019 98 CGYK--N-KIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 98 ~~~g--n-~I~Vi~~~tl~i~~~~~~ 120 (121)
.+.. + .|.|+|+.|+++++++++
T Consensus 332 vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 332 VSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred EEEecCCCEEEEEECCCcEEEEEEEe
Confidence 9887 5 799999999999999874
No 88
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.57 E-value=0.042 Score=45.01 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=62.8
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecC---------CCEEEEEEe----------CCEEEEEecCCcEEEEEc
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK---------DSVLNIVHV----------QGRVVCALADGSVAIFRR 63 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~---------~~V~~i~~~----------~~~v~v~LanG~l~Vy~r 63 (121)
|.-+.|-+|.++|.+.|+|.+.+ ..+..-.+. ..|++|++. .-.+|||...|.+++|.-
T Consensus 95 S~iGFvaigy~~G~l~viD~RGP--avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 95 SDIGFVAIGYESGSLVVIDLRGP--AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKI 172 (395)
T ss_dssp -BTSEEEEEETTSEEEEEETTTT--EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCcEEEEEecCCcEEEEECCCC--eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence 45678999999999999999874 333322222 378888764 237999999999999976
Q ss_pred C--CCCCCCCCCceEEEeCCCCCceeEeeeeC-----------------------CEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019 64 G--PDGQWDLSKYHTVTLGLPHHSVRSLAAVY-----------------------NKVWCGYK-NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 64 ~--~~g~wd~~~~~~i~lg~~~~pV~~m~~v~-----------------------~~lw~~~g-n~I~Vi~~~tl~i~~~ 117 (121)
. .+|.|...-.......+ .||..|.+.+ ..++..++ ..|+|+.+.+.+--++
T Consensus 173 lp~~~g~f~v~~~~~~~~~~--~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K 250 (395)
T PF08596_consen 173 LPSSNGRFSVQFAGATTNHD--SPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHK 250 (395)
T ss_dssp EE-GGG-EEEEEEEEE--SS------EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEE
T ss_pred ecCCCCceEEEEeeccccCC--CceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccce
Confidence 4 33545433322221222 3444444331 23555555 7899999888765543
No 89
>KOG0285|consensus
Probab=96.55 E-value=0.018 Score=46.99 Aligned_cols=100 Identities=18% Similarity=0.283 Sum_probs=75.7
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEeCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLGL 81 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~lg~ 81 (121)
+-+..|..|..+-||+... |..++.+. +..+|.+..+. +.+|+.|.-|++|..| |+..-++ +++-.
T Consensus 248 dvl~t~grDst~RvWDiRt--r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW--------Dl~agkt~~tlt~ 317 (460)
T KOG0285|consen 248 DVLVTGGRDSTIRVWDIRT--RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW--------DLRAGKTMITLTH 317 (460)
T ss_pred eeEEecCCcceEEEeeecc--cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe--------eeccCceeEeeec
Confidence 4577889999999999988 66788876 66789998887 8899999999999985 7777666 34444
Q ss_pred CCCceeEeeeeCCE-EEE-EeCCeEEEEeCCCCcEE
Q psy16019 82 PHHSVRSLAAVYNK-VWC-GYKNKIHVVDPKSLDVI 115 (121)
Q Consensus 82 ~~~pV~~m~~v~~~-lw~-~~gn~I~Vi~~~tl~i~ 115 (121)
...+||||....++ +++ |+.+.|.-.+..-++..
T Consensus 318 hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~ 353 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFL 353 (460)
T ss_pred ccceeeEEecCCchhhhhccCCccceeccCCccchh
Confidence 46899999999644 344 33377877665555443
No 90
>KOG0277|consensus
Probab=96.54 E-value=0.0099 Score=46.57 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=40.7
Q ss_pred CCeEEEEECCccc-ceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEE
Q psy16019 14 NGSVFVHSAVSQW-RRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFR 62 (121)
Q Consensus 14 ~g~I~v~~~~~~~-~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~ 62 (121)
+|+|+|.+..+.- -++..++...|.++++... +++|++|.+||+|-+|.
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 7999999987532 2456788888999999965 67999999999999994
No 91
>KOG0276|consensus
Probab=96.51 E-value=0.014 Score=50.45 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=61.2
Q ss_pred CCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeCCCCCceeEeeeeCCEEEEEeC---CeEEEE
Q psy16019 36 KDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAVYNKVWCGYK---NKIHVV 107 (121)
Q Consensus 36 ~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi 107 (121)
.+.|-|+-.+ +.-+.++|=||+|.|| +.+...+ +.+.+ .|||.-..+..+=|.-+| -+|.|+
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IW--------nyetqtmVksfeV~~--~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIW--------NYETQTMVKSFEVSE--VPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEE--------ecccceeeeeeeecc--cchhhheeeeccceEEEecCCceEEEE
Confidence 3566666665 4579999999999996 6666544 56767 999999999888888777 389999
Q ss_pred eCCCCcEEEEEEe
Q psy16019 108 DPKSLDVIRPVTI 120 (121)
Q Consensus 108 ~~~tl~i~~~~~~ 120 (121)
|-+|++..+.||+
T Consensus 83 nynt~ekV~~FeA 95 (794)
T KOG0276|consen 83 NYNTGEKVKTFEA 95 (794)
T ss_pred ecccceeeEEeec
Confidence 9999999999997
No 92
>KOG1407|consensus
Probab=96.49 E-value=0.072 Score=41.94 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=72.3
Q ss_pred EEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCc-eEEEeCCCCC
Q psy16019 9 WLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKY-HTVTLGLPHH 84 (121)
Q Consensus 9 wiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i~lg~~~~ 84 (121)
.+-+..|+|.|.+-.+ -|.+++++ +|+.-+||++.+ .+.-+|.||..+.. ||+++. +.-.+..-..
T Consensus 163 flt~GlG~v~ILsyps--Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSL--------WD~~ELiC~R~isRldw 232 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPS--LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSL--------WDVDELICERCISRLDW 232 (313)
T ss_pred EEecCCceEEEEeccc--cccccccccCCcceEEEEECCCCceEeeccccceeec--------cChhHhhhheeeccccC
Confidence 3445569999988776 57788885 678888998874 36667888887777 688886 2223333348
Q ss_pred ceeEeeeeC-CEE-EEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 85 SVRSLAAVY-NKV-WCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 85 pV~~m~~v~-~~l-w~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
|||.+...- +++ .-|+. ..|=|=+.+|++-.+.++.
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec
Confidence 999999983 444 33444 4688888899988777653
No 93
>KOG1274|consensus
Probab=96.46 E-value=0.045 Score=48.81 Aligned_cols=107 Identities=9% Similarity=0.076 Sum_probs=76.8
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGL 81 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~ 81 (121)
....++.-.-||.|.+|+..+.. ..=.++. ..+.|.+|.+..++..+|..++++.+|.-.+. ++..+| .+
T Consensus 24 ~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~-----~~~~iL~Rf-- 95 (933)
T KOG1274|consen 24 DGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG-----EEDTILARF-- 95 (933)
T ss_pred CCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCC-----Cccceeeee--
Confidence 34477777778889998876642 2223343 66899999999999999999999999955432 111222 23
Q ss_pred CCCceeEeeeeCC--EEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019 82 PHHSVRSLAAVYN--KVWCGYKN-KIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 82 ~~~pV~~m~~v~~--~lw~~~gn-~I~Vi~~~tl~i~~~~~ 119 (121)
..|+|++++.++ .+.+|... -|.+++..+...++.+.
T Consensus 96 -tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr 135 (933)
T KOG1274|consen 96 -TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR 135 (933)
T ss_pred -eccceEEEEecCCcEEEeecCceeEEEEeccccchheeec
Confidence 259999999964 55555554 79999999998887763
No 94
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.46 E-value=0.19 Score=38.91 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=64.8
Q ss_pred CCCCCeEEEEec-CCeEEEEECCcccc-eeeeeEecCCCEEEEEEe--CCEEEEEe-cCCcEEEEEcCCCCCCCCCCceE
Q psy16019 2 TSVLPTMWLGSQ-NGSVFVHSAVSQWR-RCLHSIQLKDSVLNIVHV--QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHT 76 (121)
Q Consensus 2 ~~~~~tvwiGt~-~g~I~v~~~~~~~~-~~l~~~~l~~~V~~i~~~--~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~ 76 (121)
+.....+++|++ ++.|++|+..+.-+ +...++.+++.+..|... ++.+|++. .+|.|.+|+.+.+|... .....
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~-~~~~~ 121 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV-APIQI 121 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC-Cceee
Confidence 345667888864 88999999864212 234455566555566655 55799886 47899999876555211 11111
Q ss_pred EEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCC
Q psy16019 77 VTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKS 111 (121)
Q Consensus 77 i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~t 111 (121)
+. +. .+..++.+. ++.+++++. +.|.|+|.++
T Consensus 122 ~~-~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 122 IE-GL--EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred cc-CC--CcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 11 11 122333333 578887664 7999999876
No 95
>KOG0303|consensus
Probab=96.45 E-value=0.026 Score=46.48 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=68.1
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEE----------EEe---CCEEEEEecCCcEEEEEcCCCCCCCCCC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNI----------VHV---QGRVVCALADGSVAIFRRGPDGQWDLSK 73 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i----------~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~ 73 (121)
-+--|+||..|-||...++-. ...+..+|.++ .++ .|-++.|.+|.++.+| ++..
T Consensus 96 vIASgSeD~~v~vW~IPe~~l----~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW--------nv~t 163 (472)
T KOG0303|consen 96 VIASGSEDTKVMVWQIPENGL----TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW--------NVGT 163 (472)
T ss_pred eeecCCCCceEEEEECCCccc----ccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE--------eccC
Confidence 345688999999999887421 11233444444 444 4567788888888886 5544
Q ss_pred c-eEEEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019 74 Y-HTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 74 ~-~~i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~ 117 (121)
- .+|++..| .=|.+|..+ ++.+..+|. .+|.|+|+.+.++...
T Consensus 164 geali~l~hp-d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 164 GEALITLDHP-DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred CceeeecCCC-CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee
Confidence 3 35777754 667777777 567777888 5899999999998865
No 96
>KOG0305|consensus
Probab=96.44 E-value=0.023 Score=47.86 Aligned_cols=106 Identities=14% Similarity=0.085 Sum_probs=77.8
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEec--CCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE-e
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT-L 79 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~-l 79 (121)
....+-+|+.+|.+.||+..+ .+....+.. ..-|-||......+-.|.-||.+.++ |+..+.. .. +
T Consensus 228 ~G~~LavG~~~g~v~iwD~~~--~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~--------dvR~~~~~~~~~ 297 (484)
T KOG0305|consen 228 DGSHLAVGTSDGTVQIWDVKE--QKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNH--------DVRISQHVVSTL 297 (484)
T ss_pred CCCEEEEeecCCeEEEEehhh--ccccccccCCcCceeEEEeccCceEEEecCCCcEEEE--------EEecchhhhhhh
Confidence 456789999999999999888 455666654 58999999999999999999999998 4433322 11 2
Q ss_pred CCCCCceeEeeeeCCEEEEEeC---CeEEEEeCCCCcEEEEEE
Q psy16019 80 GLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 80 g~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~tl~i~~~~~ 119 (121)
..-.+-|.-|....+....++| |.++|.|..+.+.+..|.
T Consensus 298 ~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~ 340 (484)
T KOG0305|consen 298 QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT 340 (484)
T ss_pred hcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe
Confidence 2223667667777655555555 789999997777766653
No 97
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.42 E-value=0.21 Score=39.07 Aligned_cols=106 Identities=13% Similarity=0.250 Sum_probs=67.4
Q ss_pred CCeEEEEec-CC--eEEEEECCcccceeeeeEecCCCEEE--EEEeCCEEEEEe-cCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019 5 LPTMWLGSQ-NG--SVFVHSAVSQWRRCLHSIQLKDSVLN--IVHVQGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHTV- 77 (121)
Q Consensus 5 ~~tvwiGt~-~g--~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~~~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~i- 77 (121)
.+++|-+|. .| .|..++... -+.+++.++|+..|. |...++++|.=. -+|...+|++ +..+.+
T Consensus 55 ~g~LyESTG~yG~S~l~~~d~~t--g~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~--------~tl~~~~ 124 (264)
T PF05096_consen 55 DGTLYESTGLYGQSSLRKVDLET--GKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDP--------NTLKKIG 124 (264)
T ss_dssp TTEEEEEECSTTEEEEEEEETTT--SSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEET--------TTTEEEE
T ss_pred CCEEEEeCCCCCcEEEEEEECCC--CcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEcc--------ccceEEE
Confidence 467888884 44 677788776 467788899987765 667777777644 4577888844 444332
Q ss_pred EeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEeC
Q psy16019 78 TLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTIR 121 (121)
Q Consensus 78 ~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~~ 121 (121)
++.-+.+. --|+..+++||.+.| ++++.+|+++++++++++|.
T Consensus 125 ~~~y~~EG-WGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 125 TFPYPGEG-WGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEE-SSS---EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred EEecCCcc-eEEEcCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 22111111 235566899999999 89999999999999999873
No 98
>KOG0306|consensus
Probab=96.40 E-value=0.054 Score=47.71 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=71.6
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL 81 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~ 81 (121)
...+-+|=+||.|.||+..+ ...+-++..+ .+|++|+|. +.++..|..||.|.||.-. .+--.+++..
T Consensus 77 ~l~lAVGYaDGsVqif~~~s--~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV-------~E~Gl~rL~G 147 (888)
T KOG0306|consen 77 ILLLAVGYADGSVQIFSLES--EEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLV-------GEEGLFRLRG 147 (888)
T ss_pred cceEEEEecCceEEeeccCC--CceeeeecccccceEEEEEcccCceEeecCCCccEEEEEec-------cceeeEEeec
Confidence 34568999999999999887 3455566544 899999997 5689999999999998442 2223455544
Q ss_pred CCCceeEeeeeC-CEEEEEeC--CeEEEEeCCCCcEE
Q psy16019 82 PHHSVRSLAAVY-NKVWCGYK--NKIHVVDPKSLDVI 115 (121)
Q Consensus 82 ~~~pV~~m~~v~-~~lw~~~g--n~I~Vi~~~tl~i~ 115 (121)
....|+-+...+ +.+-.+++ +.|..-|.+|-...
T Consensus 148 Hkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf 184 (888)
T KOG0306|consen 148 HKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCF 184 (888)
T ss_pred chHHHhHHhccCCCeEEEEeccCceEEEEecccceee
Confidence 346676666665 66666666 56777776665443
No 99
>KOG1273|consensus
Probab=96.38 E-value=0.022 Score=45.92 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=60.4
Q ss_pred eeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeCCCCCceeEeeee--CCEEEEEeC-
Q psy16019 30 LHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV--YNKVWCGYK- 101 (121)
Q Consensus 30 l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v--~~~lw~~~g- 101 (121)
-+++++|. -.|++++ +..+-+|++||.|.|| |+..... ++-.. .||.|+.-. +..|--++.
T Consensus 18 ~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~--------D~~T~~iar~lsaH~--~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 18 THTLDNPL-AECCQFSRWGDYLAVGCANGRVVIY--------DFDTFRIARMLSAHV--RPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred ceeccCCc-cceEEeccCcceeeeeccCCcEEEE--------Eccccchhhhhhccc--cceeEEEecCCCCEeeeecCC
Confidence 46777776 5677876 5689999999999998 6555433 33333 899999987 466777777
Q ss_pred CeEEEEeCCCCcEEEEEE
Q psy16019 102 NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 102 n~I~Vi~~~tl~i~~~~~ 119 (121)
+.|...|...+.+.+++-
T Consensus 87 ~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred ceeEEEeccCCCceeEEE
Confidence 799999999999888763
No 100
>KOG0318|consensus
Probab=96.27 E-value=0.096 Score=44.52 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=66.0
Q ss_pred EEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe-CC--------------------------------------
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV-QG-------------------------------------- 47 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~-~~-------------------------------------- 47 (121)
+.-|-.+|.+.||++....+-.+.+++ +..+|.+|... ++
T Consensus 74 iASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~ 153 (603)
T KOG0318|consen 74 IASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSV 153 (603)
T ss_pred EeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeee
Confidence 444557899999998874333345564 45788888864 22
Q ss_pred --------EEEEEecCCcEEEEEcCCCCCCCCCCceE-EEeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEE
Q psy16019 48 --------RVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVI 115 (121)
Q Consensus 48 --------~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~ 115 (121)
|+-.|..|+++++|+ -.++++ .++++-..=|+|.... +++.++..| .+|+++|-.|++..
T Consensus 154 ~~KpsRPfRi~T~sdDn~v~ffe--------GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v 225 (603)
T KOG0318|consen 154 DFKPSRPFRIATGSDDNTVAFFE--------GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV 225 (603)
T ss_pred eccCCCceEEEeccCCCeEEEee--------CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE
Confidence 334444444555541 112222 2333334568888887 367777666 79999999999999
Q ss_pred EEEE
Q psy16019 116 RPVT 119 (121)
Q Consensus 116 ~~~~ 119 (121)
..|+
T Consensus 226 g~l~ 229 (603)
T KOG0318|consen 226 GELE 229 (603)
T ss_pred EEec
Confidence 8886
No 101
>KOG2048|consensus
Probab=96.26 E-value=0.18 Score=43.83 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=78.2
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecC--CCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL 79 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l 79 (121)
..+.+-+|-.+|.|-||+...+|-. ...+..| .+|-.|++. ++++|.+..||+|.=| |+...+-+ ..
T Consensus 36 kS~~lAvsRt~g~IEiwN~~~~w~~-~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~Ew--------Dl~~lk~~~~~ 106 (691)
T KOG2048|consen 36 KSNQLAVSRTDGNIEIWNLSNNWFL-EPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEW--------DLHTLKQKYNI 106 (691)
T ss_pred cCCceeeeccCCcEEEEccCCCcee-eEEEecCCCCceeeEEEccCCeEEeecCCceEEEE--------ecccCceeEEe
Confidence 4456888999999999999987653 2334445 599999998 7899999999999886 76665443 33
Q ss_pred CCCCCceeEeeee--CCEEEEEeCC-eEEEEeCCCCcEEE
Q psy16019 80 GLPHHSVRSLAAV--YNKVWCGYKN-KIHVVDPKSLDVIR 116 (121)
Q Consensus 80 g~~~~pV~~m~~v--~~~lw~~~gn-~I~Vi~~~tl~i~~ 116 (121)
.....+|=+|++. ++.+.+||-+ -++.|+....+|+.
T Consensus 107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~ 146 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY 146 (691)
T ss_pred cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE
Confidence 3335788888887 5889999985 56677777777764
No 102
>KOG1274|consensus
Probab=96.22 E-value=0.082 Score=47.22 Aligned_cols=106 Identities=15% Similarity=0.046 Sum_probs=76.2
Q ss_pred CeEEEEecCCeEEEEECCcccce-eeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRR-CLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHH 84 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~-~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~ 84 (121)
+-+.+|++++.|++|...+.... .+.++.+|..+++.-..++.+-+|..|=.|-+-.-. |...-+.+.=.+ .
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-----D~s~~~~lrgh~--a 139 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-----DSSQEKVLRGHD--A 139 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc-----ccchheeecccC--C
Confidence 46788999999999998886555 688889997777766667678777777666665321 222223333333 8
Q ss_pred ceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019 85 SVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 85 pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~ 118 (121)
||.++.+. ++.|..+.. .+|.|+|..++.+.+.+
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl 176 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL 176 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhc
Confidence 99999988 356666555 68999999998877654
No 103
>KOG0283|consensus
Probab=96.20 E-value=0.042 Score=48.09 Aligned_cols=103 Identities=16% Similarity=0.224 Sum_probs=76.2
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-----EEe
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-----VTL 79 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-----i~l 79 (121)
..--|+-||++.||+..+ ++...-..+++-|+.++|. +..++||.=||...+| ++...++ |.+
T Consensus 424 yFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY--------~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY--------DTEGLKLVSDFHIRL 493 (712)
T ss_pred cEeecccccceEEeecCc--CeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEE--------EccCCeEEEeeeEee
Confidence 345688999999999999 6776666899999999997 4589999999999999 4444433 333
Q ss_pred CC----CCCceeEeeee---CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 80 GL----PHHSVRSLAAV---YNKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 80 g~----~~~pV~~m~~v---~~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
.. ...-|+-+... .++|-+.+. .+|.|+|.++.++.+.|.
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 21 12357766666 366777666 799999998777766553
No 104
>KOG0282|consensus
Probab=96.20 E-value=0.014 Score=48.70 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=69.8
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC-CEEEEEec-CCcEEEEEcCCCCCCCCCCceEEEe-
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-GRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVTL- 79 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i~l- 79 (121)
.++...+|+.|++|.-|+... .+.++.+.-. .+|++|.+.+ ++=|+..+ |+++.|| +...+-.++.
T Consensus 311 ~~n~fl~G~sd~ki~~wDiRs--~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riW--------e~~~~v~ik~i 380 (503)
T KOG0282|consen 311 NQNIFLVGGSDKKIRQWDIRS--GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIW--------ENRIPVPIKNI 380 (503)
T ss_pred CCcEEEEecCCCcEEEEeccc--hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEE--------EcCCCccchhh
Confidence 478999999999999999998 5778888655 7999999974 45566555 5888887 3444433322
Q ss_pred CCC-CCceeEeeeeCCEEEEEeC---CeEEEEeCCC
Q psy16019 80 GLP-HHSVRSLAAVYNKVWCGYK---NKIHVVDPKS 111 (121)
Q Consensus 80 g~~-~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~t 111 (121)
.++ ....+||....+.=|.+|+ |.|.++.+..
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred cchhhccCcceecCCCCCeehhhccCceEEEEeccc
Confidence 122 3566688888666666665 8999997643
No 105
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.16 E-value=0.42 Score=37.78 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=69.4
Q ss_pred CCCCeEEEEec-CCeEEEEECCc-c-cceeeeeEe-cCC------CEEEEEEe--CCEEEEEe-cCCcEEEEEcCC-CCC
Q psy16019 3 SVLPTMWLGSQ-NGSVFVHSAVS-Q-WRRCLHSIQ-LKD------SVLNIVHV--QGRVVCAL-ADGSVAIFRRGP-DGQ 68 (121)
Q Consensus 3 ~~~~tvwiGt~-~g~I~v~~~~~-~-~~~~l~~~~-l~~------~V~~i~~~--~~~v~v~L-anG~l~Vy~r~~-~g~ 68 (121)
.....+++-.| ++.|.+|+... . ..+.++++. +|. ..-.|... ..++||+. .+++|++|+.+. +|.
T Consensus 201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 34567777775 78899998772 1 123444443 321 35566665 66899987 456799998843 331
Q ss_pred CCCCCceEEEe-CCCCCceeEeeee--CCEEEEEeC--CeEEEE--eCCCCcEEEE
Q psy16019 69 WDLSKYHTVTL-GLPHHSVRSLAAV--YNKVWCGYK--NKIHVV--DPKSLDVIRP 117 (121)
Q Consensus 69 wd~~~~~~i~l-g~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi--~~~tl~i~~~ 117 (121)
+..-..+.. |. .| |.|.+. ++.||++++ +.|.+| |++|++++..
T Consensus 281 --l~~~~~~~~~G~--~P-r~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 281 --LTLVQTVPTGGK--FP-RHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp --EEEEEEEEESSS--SE-EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred --eEEEEEEeCCCC--Cc-cEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 222233455 33 45 777774 799999998 677776 6788887754
No 106
>KOG0289|consensus
Probab=96.11 E-value=0.083 Score=44.01 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=66.3
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH 83 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~ 83 (121)
..=.|+.||.+-||++.+. ..+..|. +.++|..|.+.+| .+-++..||.|-.|.... +.+++++.+.+-
T Consensus 361 ifgtgt~d~~vkiwdlks~--~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK-----l~n~kt~~l~~~- 432 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQ--TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK-----LKNFKTIQLDEK- 432 (506)
T ss_pred EEeccCCCceEEEEEcCCc--cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh-----hcccceeecccc-
Confidence 4456889999999999983 4566664 4489999999866 566777888888874432 246677888764
Q ss_pred CceeEeeee--CCEEEEEeCCeEEEEeCC
Q psy16019 84 HSVRSLAAV--YNKVWCGYKNKIHVVDPK 110 (121)
Q Consensus 84 ~pV~~m~~v--~~~lw~~~gn~I~Vi~~~ 110 (121)
++|.++.+- +.-|-.+ |+.+.|+-..
T Consensus 433 ~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~ 460 (506)
T KOG0289|consen 433 KEVNSLSFDQSGTYLGIA-GSDLQVYICK 460 (506)
T ss_pred ccceeEEEcCCCCeEEee-cceeEEEEEe
Confidence 588887776 3444444 7765555433
No 107
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.06 E-value=0.29 Score=43.41 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=74.7
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEE-------E--EEE------------------eCCEEEEEecCCc
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVL-------N--IVH------------------VQGRVVCALADGS 57 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~-------~--i~~------------------~~~~v~v~LanG~ 57 (121)
.++|+++|.++.++-+++.+ =|.+++++....+. | ..| .+++||++..||.
T Consensus 194 gg~lYv~t~~~~V~ALDa~T--Gk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAAT--GKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCC--CcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 57899999999999999876 36677775542211 1 122 2459999999999
Q ss_pred EEEEEcCCCC-CCCCCCceEE----EeCCCC---Ccee-EeeeeCCEEEEEe-----------CCeEEEEeCCCCcEEEE
Q psy16019 58 VAIFRRGPDG-QWDLSKYHTV----TLGLPH---HSVR-SLAAVYNKVWCGY-----------KNKIHVVDPKSLDVIRP 117 (121)
Q Consensus 58 l~Vy~r~~~g-~wd~~~~~~i----~lg~~~---~pV~-~m~~v~~~lw~~~-----------gn~I~Vi~~~tl~i~~~ 117 (121)
|..++..++. .|++.....+ .+++.+ ..++ .-.+.++.+.+|. +..|+-+|++|+++.=+
T Consensus 272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9888766543 5876554332 222211 0111 1245578888875 35699999999998866
Q ss_pred EE
Q psy16019 118 VT 119 (121)
Q Consensus 118 ~~ 119 (121)
|+
T Consensus 352 ~~ 353 (764)
T TIGR03074 352 WD 353 (764)
T ss_pred Ee
Confidence 64
No 108
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.05 E-value=0.22 Score=37.12 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=65.3
Q ss_pred CCeEEEEecC---------CeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEE-ecCCcEEEEEcCCCCCCCCC
Q psy16019 5 LPTMWLGSQN---------GSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCA-LADGSVAIFRRGPDGQWDLS 72 (121)
Q Consensus 5 ~~tvwiGt~~---------g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~-LanG~l~Vy~r~~~g~wd~~ 72 (121)
++.+|+++.. |.|+.++.....+.....+..| --|.+. ++.+|++ ...+.|..|+.+.++. .+.
T Consensus 96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~-~~~ 171 (246)
T PF08450_consen 96 DGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFP---NGIAFSPDGKTLYVADSFNGRIWRFDLDADGG-ELS 171 (246)
T ss_dssp TS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSE---EEEEEETTSSEEEEEETTTTEEEEEEEETTTC-CEE
T ss_pred CCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccc---cceEECCcchheeecccccceeEEEecccccc-cee
Confidence 4568998752 6788888774222223333333 334554 4568865 4567788887765442 223
Q ss_pred CceE-EEeCCCCCceeEeeee-CCEEEEEe--CCeEEEEeCCCCcEEEEEEe
Q psy16019 73 KYHT-VTLGLPHHSVRSLAAV-YNKVWCGY--KNKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 73 ~~~~-i~lg~~~~pV~~m~~v-~~~lw~~~--gn~I~Vi~~~tl~i~~~~~~ 120 (121)
++++ +.+.....-..-|++- ++.||+++ +++|.++|++ +++.+.+++
T Consensus 172 ~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 172 NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence 3443 3444421113445555 68999994 5899999998 888877654
No 109
>KOG0264|consensus
Probab=96.02 E-value=0.09 Score=43.46 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=64.2
Q ss_pred EEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe--CCEEE-EEecCCcEEEEEcCCCCCCCCCCc--eEEEeCCCC
Q psy16019 10 LGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV--QGRVV-CALADGSVAIFRRGPDGQWDLSKY--HTVTLGLPH 83 (121)
Q Consensus 10 iGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~--~~~v~-v~LanG~l~Vy~r~~~g~wd~~~~--~~i~lg~~~ 83 (121)
--++||.+.|+++.....++.+.. .+++.|.|+.++ ++.++ .|.+||+|++| |+.+. ++.++....
T Consensus 245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~Lw--------DlRnL~~~lh~~e~H~ 316 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALW--------DLRNLNKPLHTFEGHE 316 (422)
T ss_pred eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEe--------echhcccCceeccCCC
Confidence 346899999999997423455555 456899999975 34444 45569999998 44443 334555545
Q ss_pred CceeEeeee--CCEEEEEeC--CeEEEEeCCC
Q psy16019 84 HSVRSLAAV--YNKVWCGYK--NKIHVVDPKS 111 (121)
Q Consensus 84 ~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~t 111 (121)
.-|-++.-. ...+-+++| +++.|-|...
T Consensus 317 dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 317 DEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred cceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 677776544 577777777 6888888765
No 110
>KOG0273|consensus
Probab=96.00 E-value=0.17 Score=42.53 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=47.6
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe--CCEEEEEecCCcEEEEEcC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV--QGRVVCALADGSVAIFRRG 64 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~ 64 (121)
....+-.|.++|.+.||+... ....++ ++.+||++++.+ ++++..|..||+..+|.-.
T Consensus 246 ~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred CCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc
Confidence 456788999999999999887 334555 566899999998 4679999999999998553
No 111
>KOG4640|consensus
Probab=95.92 E-value=0.029 Score=48.40 Aligned_cols=58 Identities=12% Similarity=0.239 Sum_probs=46.4
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCC-CEE-EEEE--eCCEEEEEecCCcEEEEEcCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-SVL-NIVH--VQGRVVCALADGSVAIFRRGP 65 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-~V~-~i~~--~~~~v~v~LanG~l~Vy~r~~ 65 (121)
.+.+-++|++|.|.+|-++- +.+++++.|+ .|+ ++.+ .++.+-||++||+|.+-.-.+
T Consensus 32 ~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 32 MDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 45677899999999999884 7799999884 555 6655 467899999999999984443
No 112
>KOG3621|consensus
Probab=95.90 E-value=0.04 Score=47.98 Aligned_cols=107 Identities=20% Similarity=0.166 Sum_probs=70.7
Q ss_pred CCCCCeEEEEecCCeEEEEECCccccee-eeeEecC-CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRC-LHSIQLK-DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~-l~~~~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
++....+.+|+..|.+|+|+-.....+. ...-... -.+.++...+..|-+|.++|.|+||..+..+. .+...++=
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p---~~~~~~t~ 118 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP---RDLDYVTP 118 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC---Ccceeecc
Confidence 4566789999999999999977732111 1111111 13445556678899999999999998876432 11222333
Q ss_pred CCC--CCceeEeeee--CCEEEEEeC-CeEEEEeCCC
Q psy16019 80 GLP--HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKS 111 (121)
Q Consensus 80 g~~--~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~t 111 (121)
++. ...|+|+.-. +.++|.|-. ++|......+
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 333 4678888765 689999988 6777665555
No 113
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=95.84 E-value=0.028 Score=30.91 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=24.2
Q ss_pred eeeeeEecCCCE-EEEEEeCCEEEEEecCCcEEEEEc
Q psy16019 28 RCLHSIQLKDSV-LNIVHVQGRVVCALADGSVAIFRR 63 (121)
Q Consensus 28 ~~l~~~~l~~~V-~~i~~~~~~v~v~LanG~l~Vy~r 63 (121)
+.+|+.+++.++ ..+...++.||++..||.|..|+.
T Consensus 2 ~~~W~~~~~~~~~~~~~v~~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 2 KVLWSYDTGGPIWSSPAVAGGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp -EEEEEE-SS---S--EECTSEEEEE-TTSEEEEEET
T ss_pred ceeEEEECCCCcCcCCEEECCEEEEEcCCCEEEEEeC
Confidence 356777777654 346788999999999999999954
No 114
>KOG0294|consensus
Probab=95.83 E-value=0.093 Score=42.18 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=60.5
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCC----EEEEEecCCcEEEEEcCCCCCCCCC-CceEE
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQG----RVVCALADGSVAIFRRGPDGQWDLS-KYHTV 77 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g~wd~~-~~~~i 77 (121)
.++.+.+|-+|+.|.+++..+ ..++..+ .++..|-+|....+ ++..+.+||.|.||.-. |+.. +|..+
T Consensus 218 ~~~~L~vG~d~~~i~~~D~ds--~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~----~~~k~~~~~l 291 (362)
T KOG0294|consen 218 DGSELLVGGDNEWISLKDTDS--DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID----METKKRPTLL 291 (362)
T ss_pred CCceEEEecCCceEEEeccCC--CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc----ccccCCccee
Confidence 467899999999999999998 6778877 56799999996665 88889999999999544 3322 23333
Q ss_pred EeCCCCCceeEeeee
Q psy16019 78 TLGLPHHSVRSLAAV 92 (121)
Q Consensus 78 ~lg~~~~pV~~m~~v 92 (121)
..-+-...++||...
T Consensus 292 ~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 292 AELNTNVRLTCLRVK 306 (362)
T ss_pred EEeecCCccceeeeh
Confidence 222223467777654
No 115
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.83 E-value=0.34 Score=38.52 Aligned_cols=108 Identities=13% Similarity=0.185 Sum_probs=72.2
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCC---CEEEEEEeCCEEEEEecCCcEEEEEcCCC-CCCCCCCceEEEeC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD---SVLNIVHVQGRVVCALADGSVAIFRRGPD-GQWDLSKYHTVTLG 80 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~---~V~~i~~~~~~v~v~LanG~l~Vy~r~~~-g~wd~~~~~~i~lg 80 (121)
.+++++|+.+|.+|.++..+ =+.+++...+. -.-.....++.||++..+|.+..++...+ -.|..+.+..+...
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~--G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~ 188 (370)
T COG1520 111 DGKIYVGSWDGKLYALDAST--GTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS 188 (370)
T ss_pred CCeEEEecccceEEEEECCC--CcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence 46799999999999999854 25567666666 22223455788999998899888876644 34763332112222
Q ss_pred CCCCceeEeeeeCCEEEEEeCC---eEEEEeCCCCcEEEEE
Q psy16019 81 LPHHSVRSLAAVYNKVWCGYKN---KIHVVDPKSLDVIRPV 118 (121)
Q Consensus 81 ~~~~pV~~m~~v~~~lw~~~gn---~I~Vi~~~tl~i~~~~ 118 (121)
....|+ ...+.++.++.+ .++-+|+++++..-+.
T Consensus 189 ~~~~~~----~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 189 IYGSPA----IASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cccCce----eecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 222344 556778877764 7999999999887664
No 116
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=95.81 E-value=0.081 Score=28.06 Aligned_cols=35 Identities=14% Similarity=0.411 Sum_probs=28.4
Q ss_pred eeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEE
Q psy16019 28 RCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFR 62 (121)
Q Consensus 28 ~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~ 62 (121)
+++++++-+ ++|.+|.+.. +.+.+|..||+|.+|+
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 456777654 8999999985 5899999999999983
No 117
>KOG2066|consensus
Probab=95.70 E-value=0.19 Score=44.57 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=73.1
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-------EEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-------RVVCALADGSVAIFRRGPDGQWDLSKYHTV 77 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-------~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i 77 (121)
+.-|-.+++||++.|.+.-+. +..+++...-++.+|..+++ +.++|.--| |..|+|+=-|.|+. +
T Consensus 83 Gey~asCS~DGkv~I~sl~~~--~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~-----v 154 (846)
T KOG2066|consen 83 GEYVASCSDDGKVVIGSLFTD--DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS-----V 154 (846)
T ss_pred CceEEEecCCCcEEEeeccCC--ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc-----e
Confidence 345667778898888887663 33333333334555555433 566666667 99999986565552 2
Q ss_pred EeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEEE
Q psy16019 78 TLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 78 ~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~ 118 (121)
.+.+-..||+|+.-.++-+.-++--.|.|+|..+.+....+
T Consensus 155 ~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 155 VLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNI 195 (846)
T ss_pred eeecCccceEEEEecCcEEEEecCCCcEEEeccccceeecc
Confidence 33333489999999999998888999999999998876544
No 118
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.67 E-value=0.042 Score=29.85 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.8
Q ss_pred CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019 93 YNKVWCGYK--NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 93 ~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~ 120 (121)
++.||+++. +.|.+||+.++++.+++++
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 578999996 8999999999999998875
No 119
>KOG0271|consensus
Probab=95.67 E-value=0.041 Score=45.30 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=48.4
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe-CCEEEEEecCCcEEEEEcCC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV-QGRVVCALADGSVAIFRRGP 65 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~ 65 (121)
.+--++.||.+.||+... ++|+..+ -++.+|+|++.- ++.+|.|..|++|-||+...
T Consensus 219 ~las~skDg~vrIWd~~~--~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 219 RLASSSKDGSVRIWDTKL--GTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred ceecccCCCCEEEEEccC--ceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccc
Confidence 344566799999999998 6787777 467999999998 88999999999999997765
No 120
>KOG2110|consensus
Probab=95.61 E-value=0.32 Score=39.75 Aligned_cols=94 Identities=16% Similarity=0.274 Sum_probs=65.3
Q ss_pred eEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCC-CCCc--eeEeee
Q psy16019 16 SVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGL-PHHS--VRSLAA 91 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~-~~~p--V~~m~~ 91 (121)
++.+++... +..+=.+.-|.+|++++.+++++.|.|..- +.|| |+++.+++ ++.+ |+.| +..+.+
T Consensus 69 ~Lkv~~~Kk--~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIy--------dI~~MklLhTI~t~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 69 KLKVVHFKK--KTTICEIFFPTSILAVRMNRKRLVVCLEES-IYIY--------DIKDMKLLHTIETTPPNPKGLCALSP 137 (391)
T ss_pred eEEEEEccc--CceEEEEecCCceEEEEEccceEEEEEccc-EEEE--------ecccceeehhhhccCCCccceEeecc
Confidence 355555554 223445567889999999999999999985 9999 77787775 3433 2334 445555
Q ss_pred eCC--EEEE-EeC--CeEEEEeCCCCcEEEEEEe
Q psy16019 92 VYN--KVWC-GYK--NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 92 v~~--~lw~-~~g--n~I~Vi~~~tl~i~~~~~~ 120 (121)
+++ .|.+ ++. ..|+++|+.+++....+++
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a 171 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA 171 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEcccceeeeEEEe
Confidence 543 3433 444 5799999999999888875
No 121
>KOG0772|consensus
Probab=95.59 E-value=0.047 Score=46.37 Aligned_cols=60 Identities=13% Similarity=0.300 Sum_probs=45.9
Q ss_pred CCCCCeEEEEec------CCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEc
Q psy16019 2 TSVLPTMWLGSQ------NGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRR 63 (121)
Q Consensus 2 ~~~~~tvwiGt~------~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r 63 (121)
+..+..+..||. .|.|++|+... -+.+..+..+ ++|..+.++. |++|||++||+.-||=.
T Consensus 418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t--~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 418 SPDDKLILTGTSAPNGMTAGTLFFFDRMT--LDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CCCceEEEecccccCCCCCceEEEEeccc--eeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 344556666664 67899999776 4667888777 6887877774 79999999999999943
No 122
>KOG2096|consensus
Probab=95.59 E-value=0.035 Score=44.83 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=61.1
Q ss_pred CCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC-C-----CCcee-EeeeeCCEEEEEeCCeEEEE
Q psy16019 37 DSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL-P-----HHSVR-SLAAVYNKVWCGYKNKIHVV 107 (121)
Q Consensus 37 ~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~-~-----~~pV~-~m~~v~~~lw~~~gn~I~Vi 107 (121)
++|+...++++ ++....-||+.-||.-+-.=. --++|++++.|. | ..|+| .|.+.++.|.++.|..+.++
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~-~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE-AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEe-cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 68988888754 788899999999986542111 114677776663 2 47886 46777899999999999999
Q ss_pred eCCCCcEEEEEE
Q psy16019 108 DPKSLDVIRPVT 119 (121)
Q Consensus 108 ~~~tl~i~~~~~ 119 (121)
++++++.+-.||
T Consensus 358 ~se~g~~~~~~e 369 (420)
T KOG2096|consen 358 ASEDGKDYPELE 369 (420)
T ss_pred EcccCccchhHH
Confidence 999988765543
No 123
>KOG2114|consensus
Probab=95.56 E-value=0.11 Score=46.24 Aligned_cols=100 Identities=16% Similarity=0.244 Sum_probs=63.2
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEec-CCC-EEEEEEeCC--EEE-EEecCC----cEEEEEcCCCCCCCCC
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDS-VLNIVHVQG--RVV-CALADG----SVAIFRRGPDGQWDLS 72 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~-V~~i~~~~~--~v~-v~LanG----~l~Vy~r~~~g~wd~~ 72 (121)
+|....|.+||.+|+|.+++..- +.++.++. +.+ |+.|...++ .+| +|...+ .|-||...... ..+
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~--~n~ 106 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD--KNN 106 (933)
T ss_pred cCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC--CCC
Confidence 56778999999999999998654 44466643 334 555544443 333 444444 57888765432 123
Q ss_pred CceEE------EeCCC--CCceeEeeeeC--CEEEEEeCCeEEE
Q psy16019 73 KYHTV------TLGLP--HHSVRSLAAVY--NKVWCGYKNKIHV 106 (121)
Q Consensus 73 ~~~~i------~lg~~--~~pV~~m~~v~--~~lw~~~gn~I~V 106 (121)
+|..+ ++-.| +.|+.++++.+ +.+.||.+|.-.+
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~ 150 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVI 150 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEE
Confidence 35443 22234 68999999886 7888898875433
No 124
>KOG0265|consensus
Probab=95.41 E-value=0.18 Score=40.30 Aligned_cols=97 Identities=15% Similarity=0.241 Sum_probs=61.3
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGL 81 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~ 81 (121)
+..|.-|+.||.+-+|+... |.+.+++.-+-.++...+ ..++++.|+-|+.|-|| |+.....+ .+.-
T Consensus 145 ~~lv~SgsdD~t~kl~D~R~--k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvW--------d~r~~d~~~~lsG 214 (338)
T KOG0265|consen 145 PQLVCSGSDDGTLKLWDIRK--KEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVW--------DLRKNDGLYTLSG 214 (338)
T ss_pred CeEEEecCCCceEEEEeecc--cchhhccccceeEEEEEecccccceeeccccCceeee--------ccccCcceEEeec
Confidence 34678899999999999998 667777744444555554 46799999999999996 55332221 1211
Q ss_pred CCCceeEeeeeC-CEEEEEeC--CeEEEEeCCC
Q psy16019 82 PHHSVRSLAAVY-NKVWCGYK--NKIHVVDPKS 111 (121)
Q Consensus 82 ~~~pV~~m~~v~-~~lw~~~g--n~I~Vi~~~t 111 (121)
...||+.|.... +.--.+.+ |.+.+.|..-
T Consensus 215 h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 215 HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred ccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 236777777662 22222332 5555555443
No 125
>KOG0276|consensus
Probab=95.39 E-value=0.099 Score=45.41 Aligned_cols=79 Identities=22% Similarity=0.392 Sum_probs=60.8
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
+..|.+--|+|||.+-||++.. .+..+++... +.|-||.+.+ ++|-+|-.+|.+. +++
T Consensus 237 p~lpiiisgsEDGTvriWhs~T--y~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-----------------v~l 297 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKT--YKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-----------------VKL 297 (794)
T ss_pred CCCcEEEEecCCccEEEecCcc--eehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-----------------EEc
Confidence 3457888999999999999887 5666777777 7899999764 4556665555543 567
Q ss_pred CCCCCceeEeeeeCCEEEEEeC
Q psy16019 80 GLPHHSVRSLAAVYNKVWCGYK 101 (121)
Q Consensus 80 g~~~~pV~~m~~v~~~lw~~~g 101 (121)
|. ..|.-+|..+++-+|+..+
T Consensus 298 gr-eeP~vsMd~~gKIiwa~~~ 318 (794)
T KOG0276|consen 298 GR-EEPAVSMDSNGKIIWAVHS 318 (794)
T ss_pred cC-CCCceeecCCccEEEEcCc
Confidence 76 3899999999999998765
No 126
>KOG1408|consensus
Probab=95.38 E-value=0.13 Score=45.51 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=71.7
Q ss_pred EEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC----CEEEEEecCCcEEEEEcC---CCCCCCCCCceEEEe
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ----GRVVCALADGSVAIFRRG---PDGQWDLSKYHTVTL 79 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~----~~v~v~LanG~l~Vy~r~---~~g~wd~~~~~~i~l 79 (121)
+--|+.|.-||||+...+ ...++++. +.++|+++++.. -+.....||-.+. |+-+ .+| .+-..++-++
T Consensus 519 LASasrdRlIHV~Dv~rn-y~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g--~~f~r~t~t~ 594 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRN-YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSG--RLFPRHTQTL 594 (1080)
T ss_pred hhhccCCceEEEEecccc-cchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCc--eecccccccc
Confidence 334678899999998874 23567774 568999999863 3677788886543 4332 233 1112222344
Q ss_pred CCCCCceeEeeeeC--CEEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019 80 GLPHHSVRSLAAVY--NKVWCGYKN-KIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 80 g~~~~pV~~m~~v~--~~lw~~~gn-~I~Vi~~~tl~i~~~~~ 119 (121)
+. ..+--|.+-. +.+..+|++ +|.|||.++++..++|.
T Consensus 595 ~k--tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK 635 (1080)
T KOG1408|consen 595 SK--TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK 635 (1080)
T ss_pred cc--ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec
Confidence 44 5566666553 677889994 79999999999999985
No 127
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.31 E-value=0.54 Score=39.82 Aligned_cols=113 Identities=17% Similarity=0.258 Sum_probs=68.7
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCC-----CEE-EEEEeCCEEEEEec------CCcEEEEEcCCCC-CCCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-----SVL-NIVHVQGRVVCALA------DGSVAIFRRGPDG-QWDL 71 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-----~V~-~i~~~~~~v~v~La------nG~l~Vy~r~~~g-~wd~ 71 (121)
.+.+++|+.+|.|+.+++.+- +.+++..+.+ .++ .-...++.||++.+ +|.|..|+...+. .|..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TG--k~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTG--KVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCC--CEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 468999999999999998763 5555554321 121 12345789999976 6889999876543 3543
Q ss_pred CCc--e-E-E-----E-eCCC-------------CCcee---EeeeeCCEEEEEeCC-----------------eEEEEe
Q psy16019 72 SKY--H-T-V-----T-LGLP-------------HHSVR---SLAAVYNKVWCGYKN-----------------KIHVVD 108 (121)
Q Consensus 72 ~~~--~-~-i-----~-lg~~-------------~~pV~---~m~~v~~~lw~~~gn-----------------~I~Vi~ 108 (121)
..- . . . . .+.+ ..++= ++-...+.||.+.|| .|+-+|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 221 0 0 0 0 0000 00111 222224667777755 899999
Q ss_pred CCCCcEEEEEE
Q psy16019 109 PKSLDVIRPVT 119 (121)
Q Consensus 109 ~~tl~i~~~~~ 119 (121)
++|++++=.|+
T Consensus 278 ~~TG~~~W~~Q 288 (527)
T TIGR03075 278 PDTGKIKWHYQ 288 (527)
T ss_pred cccCCEEEeee
Confidence 99999987765
No 128
>KOG0271|consensus
Probab=95.27 E-value=0.17 Score=41.81 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=74.0
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC-------CEEEEEecCCcEEEEEcCCCCCCCCCCc
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ-------GRVVCALADGSVAIFRRGPDGQWDLSKY 74 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~-------~~v~v~LanG~l~Vy~r~~~g~wd~~~~ 74 (121)
+....+--|+-||.|.+|+.... .+.-..++ +..-|++|.+.. .++-.+.-||++.|| |+..-
T Consensus 167 PDgk~iASG~~dg~I~lwdpktg-~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW--------d~~~~ 237 (480)
T KOG0271|consen 167 PDGKKIASGSKDGSIRLWDPKTG-QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW--------DTKLG 237 (480)
T ss_pred CCcchhhccccCCeEEEecCCCC-CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEE--------EccCc
Confidence 34455667889999999996653 22334443 446888988762 245555668999996 66554
Q ss_pred -eEEEeCCCCCceeEeeeeC-CEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019 75 -HTVTLGLPHHSVRSLAAVY-NKVWCGYK-NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 75 -~~i~lg~~~~pV~~m~~v~-~~lw~~~g-n~I~Vi~~~tl~i~~~~ 118 (121)
.++.+.--..||+|+.-=+ +-+|-|+. ..|.|.++..+...+.|
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCREL 284 (480)
T ss_pred eEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhh
Confidence 3345544458999998874 66777888 57999999987765544
No 129
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.19 E-value=1.2 Score=35.26 Aligned_cols=106 Identities=15% Similarity=0.201 Sum_probs=66.8
Q ss_pred eEEEEecC----CeEEEEECCcccce--eeeeEecCCCEEEEEE--eCCEEEEEec----CCcEEEEEcCCC-CCCCCCC
Q psy16019 7 TMWLGSQN----GSVFVHSAVSQWRR--CLHSIQLKDSVLNIVH--VQGRVVCALA----DGSVAIFRRGPD-GQWDLSK 73 (121)
Q Consensus 7 tvwiGt~~----g~I~v~~~~~~~~~--~l~~~~l~~~V~~i~~--~~~~v~v~La----nG~l~Vy~r~~~-g~wd~~~ 73 (121)
|+++|+.. +.|++|+..+...+ .++.+........|.. ..+.+|++.. +|.|..|+...+ |.. ..
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L--~~ 78 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL--TL 78 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE--EE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee--EE
Confidence 68999987 89999998442222 2333333344445555 6789999988 579999987654 321 11
Q ss_pred ceEEE-eCCCCCceeEeee--eCCEEEEEeC--CeEEEEeCCC-CcEEEE
Q psy16019 74 YHTVT-LGLPHHSVRSLAA--VYNKVWCGYK--NKIHVVDPKS-LDVIRP 117 (121)
Q Consensus 74 ~~~i~-lg~~~~pV~~m~~--v~~~lw~~~g--n~I~Vi~~~t-l~i~~~ 117 (121)
-..+. .|. .|.. +.+ .++.|++++- +.|.+++... +.+...
T Consensus 79 ~~~~~~~g~--~p~~-i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~ 125 (345)
T PF10282_consen 79 LNSVPSGGS--SPCH-IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEV 125 (345)
T ss_dssp EEEEEESSS--CEEE-EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEE
T ss_pred eeeeccCCC--CcEE-EEEecCCCEEEEEEccCCeEEEEEccCCccccee
Confidence 11122 444 5542 333 3688999863 7899988876 565554
No 130
>KOG1645|consensus
Probab=95.14 E-value=0.11 Score=43.00 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=45.1
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEE
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFR 62 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~ 62 (121)
.+-.++-+..|-|+++.. +-+..+...+.++-+..+. .+.+|+|++||.|.||+
T Consensus 208 Ll~~asl~nkiki~dlet--~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 208 LLGLASLGNKIKIMDLET--SCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred eeeeeccCceEEEEeccc--ceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence 567788888999999888 4567788888888888875 56899999999999993
No 131
>KOG0293|consensus
Probab=95.07 E-value=0.27 Score=41.01 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=76.7
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV- 77 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i- 77 (121)
|+....+|.+=+.|..|.+|+... +.+..-+....+|+++.-.+ ..+.|-|++-.+-. ||+++++.+
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~--~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~L--------WDl~e~~lv~ 431 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREA--RVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHL--------WDLEENKLVR 431 (519)
T ss_pred EcCCCcEEEEEecccceeeechhh--hhhhccccccCceeEEEEcCCCcEEEEEcccCeeEE--------eecchhhHHH
Confidence 567778888889999999999887 55555666777888877764 46888888888777 588887663
Q ss_pred -----EeCCCCCceeEeeeeCCEEEEEeC---CeEEEEeCCCCcEEEEE
Q psy16019 78 -----TLGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 78 -----~lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~tl~i~~~~ 118 (121)
+.|. .-||+.---.+.-.+++| .+|+|-+-.++++...+
T Consensus 432 kY~Ghkq~~--fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 432 KYFGHKQGH--FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred Hhhcccccc--eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee
Confidence 3444 667764444443444444 69999999999887654
No 132
>KOG1446|consensus
Probab=95.00 E-value=0.71 Score=36.84 Aligned_cols=85 Identities=9% Similarity=0.057 Sum_probs=56.1
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEecC--C---CEEE-EEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCc-
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--D---SVLN-IVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY- 74 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~---~V~~-i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~- 74 (121)
+..+..|.+.|+.+.+++.++-+.. .+.++..+ + ++-+ ..-....|+.|..||+|.||+- +..
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~G~--~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~--------~tg~ 265 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFDGT--VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL--------ETGK 265 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccCCc--EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc--------CCCc
Confidence 4567899999999999999988753 34444332 1 2222 2234668899999999999854 333
Q ss_pred eEEEeCCC-CCceeEeeeeCCEE
Q psy16019 75 HTVTLGLP-HHSVRSLAAVYNKV 96 (121)
Q Consensus 75 ~~i~lg~~-~~pV~~m~~v~~~l 96 (121)
++..+-.| ..|++|+..+....
T Consensus 266 ~v~~~~~~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 266 KVAVLRGPNGGPVSCVRFNPRYA 288 (311)
T ss_pred EeeEecCCCCCCccccccCCcee
Confidence 23333333 57888888776443
No 133
>KOG0301|consensus
Probab=94.96 E-value=0.17 Score=44.21 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=46.5
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCC-CEEEEEEe-CCEEEEEecCCcEEEEEcCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-SVLNIVHV-QGRVVCALADGSVAIFRRGP 65 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-~V~~i~~~-~~~v~v~LanG~l~Vy~r~~ 65 (121)
.+.-+---.||+.+-||+-. .|.+.|.+|. +|=|-+.. .+.++||.+||.|-||.-..
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCCeEEEecCCceEEEeecC----ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 34445555688999999855 6899999996 77777776 66899999999999998774
No 134
>KOG4649|consensus
Probab=94.88 E-value=0.64 Score=36.95 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=71.2
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEE---EEEeCCEEEEEecCCcEEEEEcCCC---CCCCCC--
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN---IVHVQGRVVCALADGSVAIFRRGPD---GQWDLS-- 72 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~---i~~~~~~v~v~LanG~l~Vy~r~~~---g~wd~~-- 72 (121)
|+.....+|.|++||..|..+... +.|+...+.+..++. |.--+..+|+|...|.|..-..+.. .-|-..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~--~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~ 178 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKT--YGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRF 178 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccc--cceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcC
Confidence 466778999999999999999887 679998899876653 5555778999999998776655432 124221
Q ss_pred -----CceE----EEeCCCCCceeEeeeeCCEEEE-EeCCeEEEEeCCC
Q psy16019 73 -----KYHT----VTLGLPHHSVRSLAAVYNKVWC-GYKNKIHVVDPKS 111 (121)
Q Consensus 73 -----~~~~----i~lg~~~~pV~~m~~v~~~lw~-~~gn~I~Vi~~~t 111 (121)
+|.. +.++....-+.||...+.++|- +.+.-|+.=-+++
T Consensus 179 ~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf~~Pc~s 227 (354)
T KOG4649|consen 179 GPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKGPIFMEPCES 227 (354)
T ss_pred CccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCCceecccccC
Confidence 1111 2222223456677777788883 3334455544444
No 135
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.33 Score=37.33 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=77.3
Q ss_pred CCeEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019 5 LPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH 83 (121)
Q Consensus 5 ~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~ 83 (121)
.+.+|.=| ++|.-++|+..+ -+++.++.-+..=--|.+.+..+. .+||+=.++-|++. ++.....+.+-+..
T Consensus 100 gd~~y~LTw~egvaf~~d~~t--~~~lg~~~y~GeGWgLt~d~~~Li--msdGsatL~frdP~---tfa~~~~v~VT~~g 172 (262)
T COG3823 100 GDYFYQLTWKEGVAFKYDADT--LEELGRFSYEGEGWGLTSDDKNLI--MSDGSATLQFRDPK---TFAELDTVQVTDDG 172 (262)
T ss_pred cceEEEEEeccceeEEEChHH--hhhhcccccCCcceeeecCCcceE--eeCCceEEEecCHH---HhhhcceEEEEECC
Confidence 45677777 688888998887 577888877765556667666644 56676555545432 45555666665545
Q ss_pred CceeEe---eeeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019 84 HSVRSL---AAVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 84 ~pV~~m---~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~ 120 (121)
.||+.+ .-+.++|++--- ++|..|+++|+++...+++
T Consensus 173 ~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widl 214 (262)
T COG3823 173 VPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDL 214 (262)
T ss_pred eecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEc
Confidence 788774 455688888554 8999999999999998875
No 136
>KOG0308|consensus
Probab=94.87 E-value=0.04 Score=47.72 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=74.8
Q ss_pred eEEEEecCCeEEEEECCcccce----eeeeEecC-CCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRR----CLHSIQLK-DSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~----~l~~~~l~-~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
.++.|..||.|.+|+..+...+ +..+++.+ |=|-+|.. ..+.+..+..|-+|-+|.-..++.|. +=++
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c-----~sti 113 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC-----MSTI 113 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh-----Hhhh
Confidence 5899999999999997764332 46777554 66666544 34468888889999999777665444 3345
Q ss_pred CCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCC
Q psy16019 80 GLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSL 112 (121)
Q Consensus 80 g~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl 112 (121)
++-..=|.|+++. ++++.++-| .+|++-|.+++
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~ 150 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTG 150 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCc
Confidence 5555789999985 588888777 78999999987
No 137
>KOG0640|consensus
Probab=94.83 E-value=0.11 Score=41.89 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=73.8
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccce----------------eeeeE-ecCCCEEEEEEeC--CEEEEEecCCcEEEEE
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRR----------------CLHSI-QLKDSVLNIVHVQ--GRVVCALADGSVAIFR 62 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~----------------~l~~~-~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~ 62 (121)
++.+..+-.|+-|-+|-|++.+...-| .+.++ .+-|.|.++.++. ..+..|.-|++|-.|
T Consensus 121 s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlF- 199 (430)
T KOG0640|consen 121 SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLF- 199 (430)
T ss_pred CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEE-
Confidence 455667778888999999997732111 12333 4557888888874 345556667999999
Q ss_pred cCCCCCCCCCCceE---E-EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019 63 RGPDGQWDLSKYHT---V-TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI 115 (121)
Q Consensus 63 r~~~g~wd~~~~~~---i-~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~ 115 (121)
|+..+.. . .+.+ .+|||||... ++.|.+|.. +.+.++|.+|.+--
T Consensus 200 -------DfsK~saKrA~K~~qd-~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 200 -------DFSKTSAKRAFKVFQD-TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF 251 (430)
T ss_pred -------ecccHHHHHHHHHhhc-cceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence 6665532 2 2333 3899999988 578888988 78999999988753
No 138
>KOG0305|consensus
Probab=94.78 E-value=0.64 Score=39.32 Aligned_cols=101 Identities=22% Similarity=0.159 Sum_probs=68.4
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP 82 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~ 82 (121)
++-+-+|.. ..+|+|+..+..-..+..+. .+.|+++.+. ++.+-||..+|.|-+|++. .....+.+..+.
T Consensus 188 ~n~laValg-~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-----~~k~~~~~~~~h- 259 (484)
T KOG0305|consen 188 ANVLAVALG-QSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-----EQKKTRTLRGSH- 259 (484)
T ss_pred CCeEEEEec-ceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehh-----hccccccccCCc-
Confidence 344455543 58999998874222333333 6899999997 6789999999999998432 222233344422
Q ss_pred CCceeEeeeeCCEEEEEeC-CeEEEEeCCCCc
Q psy16019 83 HHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLD 113 (121)
Q Consensus 83 ~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~ 113 (121)
..-|-||+-.+..+-+|.+ ..|...|....+
T Consensus 260 ~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 260 ASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred CceeEEEeccCceEEEecCCCcEEEEEEecch
Confidence 2677788888888888999 478888776543
No 139
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=94.64 E-value=0.41 Score=40.94 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=44.6
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC--EEEEEecCCcEEEEEcC
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG--RVVCALADGSVAIFRRG 64 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~--~v~v~LanG~l~Vy~r~ 64 (121)
+..+..+.+|.+||.|.+|+..... -+..+.+=.++.+.++.+ .+.||...|.|-+|+..
T Consensus 268 sp~E~kLvlGC~DgSiiLyD~~~~~---t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 268 SPSEDKLVLGCEDGSIILYDTTRGV---TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CcccceEEEEecCCeEEEEEcCCCe---eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 3456789999999999999987632 223344444566676644 78888888999999875
No 140
>KOG0319|consensus
Probab=94.63 E-value=0.27 Score=43.24 Aligned_cols=108 Identities=13% Similarity=0.173 Sum_probs=73.8
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-------EEEEEecCCcEEEEEcCCCCCCCCCC
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-------RVVCALADGSVAIFRRGPDGQWDLSK 73 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-------~v~v~LanG~l~Vy~r~~~g~wd~~~ 73 (121)
|.....++.-+..|.-++||+..+ .++++.+++-..+-...+.++ ..|.+..+|.+-++... +
T Consensus 200 ~~~d~~~~ls~~RDkvi~vwd~~~--~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~e--------s 269 (775)
T KOG0319|consen 200 FSEDSLELLSVGRDKVIIVWDLVQ--YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSE--------S 269 (775)
T ss_pred eccCCceEEEeccCcEEEEeehhh--hhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecc--------c
Confidence 345567888899999999999976 466777777676666666554 89999999999998433 3
Q ss_pred ceEE---EeCCCCCceeEeeee-CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019 74 YHTV---TLGLPHHSVRSLAAV-YNKVWCGYK-NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 74 ~~~i---~lg~~~~pV~~m~~v-~~~lw~~~g-n~I~Vi~~~tl~i~~~~ 118 (121)
-+.+ +-.+.++-.++|... .+.+.+-.. -+++++|.+++++.++|
T Consensus 270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 270 GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence 2221 111112333344433 366666555 68999999999998865
No 141
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.59 E-value=1.4 Score=33.05 Aligned_cols=58 Identities=10% Similarity=0.175 Sum_probs=43.7
Q ss_pred CCeEEEEecCCeEEEEECCcc--cc-eeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQ--WR-RCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRG 64 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~--~~-~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~ 64 (121)
...+.++... +|+||....+ .. +..+.+.+|+.+.+|.+.++.+++|..++ ..+++-.
T Consensus 105 ~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~-f~~idl~ 165 (275)
T PF00780_consen 105 SRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG-FYLIDLN 165 (275)
T ss_pred ceEEEEEECC-EEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-eEEEecC
Confidence 3456666665 8999887664 22 56788999999999999999999999877 4444433
No 142
>KOG2111|consensus
Probab=94.56 E-value=0.45 Score=38.28 Aligned_cols=108 Identities=10% Similarity=0.177 Sum_probs=74.3
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecC--CCEEEEEEeCC-EEEEEecC------CcEEEEEcCCCCCCCCCCc
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQG-RVVCALAD------GSVAIFRRGPDGQWDLSKY 74 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~~~-~v~v~Lan------G~l~Vy~r~~~g~wd~~~~ 74 (121)
+++..-+|+++| .-||+++- .|+.-.+=..+ -.+..+++..| ..+||..+ ..|.||+ |....
T Consensus 16 D~ScFava~~~G-friyn~~P-~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD-------D~k~~ 86 (346)
T KOG2111|consen 16 DHSCFAVATDTG-FRIYNCDP-FKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD-------DLKER 86 (346)
T ss_pred CCceEEEEecCc-eEEEecCc-hhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe-------cccCc
Confidence 456788999987 35788664 34322221222 25556667665 45677555 3477763 44555
Q ss_pred eEEEeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCC-CCcEEEEEEeC
Q psy16019 75 HTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPK-SLDVIRPVTIR 121 (121)
Q Consensus 75 ~~i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~-tl~i~~~~~~~ 121 (121)
.++.+.. ..||+.+-+..+++-+...|+|+|+.-. +++..+.|+-+
T Consensus 87 ~i~el~f-~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~ 133 (346)
T KOG2111|consen 87 CIIELSF-NSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETR 133 (346)
T ss_pred EEEEEEe-ccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecc
Confidence 6666654 3799999999999999999999999877 78888888743
No 143
>KOG0284|consensus
Probab=94.50 E-value=0.078 Score=43.84 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=72.2
Q ss_pred CCCCeEEEEecCCeEEEEECCcccce-eeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRR-CLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~-~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
....-+..|+++|..-+|+....--+ +++ .+.++|.++++. +..+..|-.+|.|-+|+.+ .++-+.+.-
T Consensus 106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQ--aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn------mnnVk~~~a 177 (464)
T KOG0284|consen 106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQ--AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN------MNNVKIIQA 177 (464)
T ss_pred CCCceeEeecccccEEEecCceeeHHHHhh--hhcccceeEEEccCCCEEEEcCCCceEEecccc------hhhhHHhhH
Confidence 34567889999999999998653112 232 344789999976 4567777777888776432 122222222
Q ss_pred CCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019 80 GLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 80 g~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~~ 118 (121)
.. .+.||+|+.. ++..+++|. +.|.|-|..-.+-|+.+
T Consensus 178 hh-~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 178 HH-AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred hh-hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence 11 2799999998 577788777 78999998777766654
No 144
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.44 E-value=2 Score=34.19 Aligned_cols=106 Identities=12% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCC---CEE-EEEEeCCEEEEEecCCcEEEEEcC-CCCCCCCCCceEEEe
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD---SVL-NIVHVQGRVVCALADGSVAIFRRG-PDGQWDLSKYHTVTL 79 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~---~V~-~i~~~~~~v~v~LanG~l~Vy~r~-~~g~wd~~~~~~i~l 79 (121)
.+++++++.+|.|+-++.... +.+++.++.. .+. -+.+.++++|++..||.+..|.-. ..-.|..+..-..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g--~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~-- 143 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTG--LVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSP-- 143 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCC--cEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCe--
Confidence 468999999999999998774 3345444331 111 135568899999999977777543 2223533222201
Q ss_pred CCCCCceeEeeeeCCEEEEEe-CCeEEEEeCCCCcEEEEE
Q psy16019 80 GLPHHSVRSLAAVYNKVWCGY-KNKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 80 g~~~~pV~~m~~v~~~lw~~~-gn~I~Vi~~~tl~i~~~~ 118 (121)
.=.......+..+|.++ .+.++.+|++|++..=.+
T Consensus 144 ----~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 144 ----YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred ----EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEE
Confidence 11112344568889886 589999999999885443
No 145
>KOG4378|consensus
Probab=94.40 E-value=0.45 Score=40.58 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=69.7
Q ss_pred EEEEecCCeEEEEECCcccceeeeeEecC--CCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCceE----EE
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYHT----VT 78 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~~----i~ 78 (121)
+--++..|.|.|+++.. ++.-..|.++ ++|-=+.|+.. .+-.+.-||.|.+| |+....- ..
T Consensus 136 iAsvs~gGdiiih~~~t--~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw--------Dv~g~sp~~~~~~ 205 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKT--KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW--------DVQGMSPIFHASE 205 (673)
T ss_pred eEEeccCCcEEEEeccc--CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE--------eccCCCcccchhh
Confidence 34566789999999988 5566778888 35546667632 45667788999997 5544322 33
Q ss_pred eCCCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019 79 LGLPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 79 lg~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~ 118 (121)
....+..=-|+.+++..|.+.-| .+|+++|..+-+....+
T Consensus 206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred hccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 43433444488888888888666 89999999876655544
No 146
>KOG0270|consensus
Probab=94.29 E-value=0.41 Score=39.90 Aligned_cols=99 Identities=13% Similarity=0.208 Sum_probs=70.2
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-----
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHT----- 76 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~----- 76 (121)
....+||+||.++=|+.+.+ -+++++++.+ ++|.+|.++ .+.+-.+.+|+.|-++.-. .++|+.
T Consensus 343 ~~f~~~tddG~v~~~D~R~~-~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~------~~~~~~v~~~~ 415 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNP-GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD------VDSPKSVKEHS 415 (463)
T ss_pred eeEEEecCCceEEeeecCCC-CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec------CCCCccccccc
Confidence 46678999999999999885 3789999876 799999987 5678889999999998543 234433
Q ss_pred EEeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEE
Q psy16019 77 VTLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVI 115 (121)
Q Consensus 77 i~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~ 115 (121)
+++|. ..|++... ..+.+|-. +.+.|+|..+..-.
T Consensus 416 ~~~~r----l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 416 FKLGR----LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccc----eeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 44444 55666663 33333322 45899998876543
No 147
>KOG0289|consensus
Probab=94.29 E-value=1.4 Score=37.03 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=67.9
Q ss_pred EEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC-EEE-EEecCCcEEEEEcCCCCCCCCCCceEE-EeCCCC
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG-RVV-CALADGSVAIFRRGPDGQWDLSKYHTV-TLGLPH 83 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~-~v~-v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~~ 83 (121)
+.-.++||..-.++..+...-+..+-.-. -.++++.++.+ .+| .|+.||.|-|| |+.++.-+ +++.-.
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw--------dlks~~~~a~Fpght 389 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW--------DLKSQTNVAKFPGHT 389 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE--------EcCCccccccCCCCC
Confidence 44456667666666555211122222211 25888888754 444 36788999997 77776542 444345
Q ss_pred CceeEeeeeCCEEEEEeC--C-eEEEEeCCCCcEEEEEEe
Q psy16019 84 HSVRSLAAVYNKVWCGYK--N-KIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 84 ~pV~~m~~v~~~lw~~~g--n-~I~Vi~~~tl~i~~~~~~ 120 (121)
.||+.+...+|--|.+.+ . .|++.|.+-++--++|..
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l 429 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL 429 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence 899999999887776544 4 499999998887776653
No 148
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.29 E-value=0.51 Score=39.54 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=58.7
Q ss_pred CeEEEEECCcccceeeeeEecC---CCEEEEEEe----CCEEEEEecC-CcEEEEEcCCCCCCCCCCceEEEeCCC----
Q psy16019 15 GSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV----QGRVVCALAD-GSVAIFRRGPDGQWDLSKYHTVTLGLP---- 82 (121)
Q Consensus 15 g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~----~~~v~v~Lan-G~l~Vy~r~~~g~wd~~~~~~i~lg~~---- 82 (121)
.+|++|+... ++.++++.|+ ..++.|++. .+.-|||.|= ++|-.|.+..+|.|. .-++|.+...
T Consensus 222 ~~l~vWD~~~--r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~--a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 222 HSLHVWDWST--RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA--AEKVIDIPAKKVEG 297 (461)
T ss_dssp -EEEEEETTT--TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE--EEEEEEE--EE--S
T ss_pred CeEEEEECCC--CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee--eeEEEECCCcccCc
Confidence 4799999998 7899999998 378899875 3467777664 457777777788886 4456666541
Q ss_pred -CC-----------c-eeEeeee--CCEEEEEeC--CeEEEEeCCC
Q psy16019 83 -HH-----------S-VRSLAAV--YNKVWCGYK--NKIHVVDPKS 111 (121)
Q Consensus 83 -~~-----------p-V~~m~~v--~~~lw~~~g--n~I~Vi~~~t 111 (121)
.. | |+-|.+. .+.||++|- +.|.-+|...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 01 1 3445555 588999998 6798888765
No 149
>KOG0286|consensus
Probab=94.23 E-value=2.4 Score=34.07 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=78.4
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
.....+.-++|||++.||++-. ....+.++|| .=|..-.|.+ +.|-.|.-|..-.||+-..... +-.-+..-.+
T Consensus 65 ~Dsr~ivSaSqDGklIvWDs~T--tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~-~g~~~v~r~l 141 (343)
T KOG0286|consen 65 TDSRRIVSASQDGKLIVWDSFT--TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA-EGNVRVSREL 141 (343)
T ss_pred CCcCeEEeeccCCeEEEEEccc--ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc-cccceeeeee
Confidence 4556778899999999999887 4568899999 4566666654 5566666788999997653210 1011111122
Q ss_pred CCCCCceeEeeee-CCEEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019 80 GLPHHSVRSLAAV-YNKVWCGYKN-KIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 80 g~~~~pV~~m~~v-~~~lw~~~gn-~I~Vi~~~tl~i~~~~~ 119 (121)
..-..=+.|.... +++|--|+|+ ....-|.++++....|.
T Consensus 142 ~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred cCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec
Confidence 2222456677766 5888999995 78889999999888774
No 150
>KOG0643|consensus
Probab=94.13 E-value=0.84 Score=36.24 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=67.2
Q ss_pred CCeEEEEECCccc-----ceeeeeEecC-CCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCC-ceEEEeCC-CC
Q psy16019 14 NGSVFVHSAVSQW-----RRCLHSIQLK-DSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSK-YHTVTLGL-PH 83 (121)
Q Consensus 14 ~g~I~v~~~~~~~-----~~~l~~~~l~-~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~-~~~i~lg~-~~ 83 (121)
.+.|.+|+..+.. +.+...+..| +.++.... .+..+++|-.||.|..| |..+ ..++.-+. ..
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~--------da~~g~~~v~s~~~h~ 190 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIY--------DARTGKELVDSDEEHS 190 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEE--------EcccCceeeechhhhc
Confidence 4678888877432 2346666666 45555554 57799999999999998 5554 34443322 13
Q ss_pred CceeEeeeeC-CEEEE-EeC-CeEEEEeCCCCcEEEEEE
Q psy16019 84 HSVRSLAAVY-NKVWC-GYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 84 ~pV~~m~~v~-~~lw~-~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
..|..|.+.. ...+. ||. ++-+++|..||++++++.
T Consensus 191 ~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 191 SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 5777787774 33333 555 689999999999999885
No 151
>KOG4649|consensus
Probab=94.05 E-value=1.1 Score=35.69 Aligned_cols=104 Identities=17% Similarity=0.239 Sum_probs=68.7
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEE-EeCCEEEEEecCCcEEEEEcCCC-CCCCCCCceEEEeCCCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIV-HVQGRVVCALADGSVAIFRRGPD-GQWDLSKYHTVTLGLPH 83 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~-~~~~~v~v~LanG~l~Vy~r~~~-g~wd~~~~~~i~lg~~~ 83 (121)
-+|.+|+-+|...-.+..+. +..|.--+.+.+-|=. ..+++|.+|.-+|.|.+..-+.+ ..|.+.-...++.
T Consensus 24 T~v~igSHs~~~~avd~~sG--~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~---- 97 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSG--NLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV---- 97 (354)
T ss_pred eEEEEecCCceEEEecCCCC--cEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc----
Confidence 47889999988887777663 3344433333332211 16789999999999999877665 3566433322222
Q ss_pred CceeEeeeeCCEEEEEeCC-eEEEEeCCCCcEEEE
Q psy16019 84 HSVRSLAAVYNKVWCGYKN-KIHVVDPKSLDVIRP 117 (121)
Q Consensus 84 ~pV~~m~~v~~~lw~~~gn-~I~Vi~~~tl~i~~~ 117 (121)
.| -|...++-+|||+.+ +.+++|+.+..-..+
T Consensus 98 ~a--~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 98 RA--QCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred ce--EEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 12 355667999999995 799999998765543
No 152
>KOG0319|consensus
Probab=94.04 E-value=0.35 Score=42.55 Aligned_cols=106 Identities=21% Similarity=0.235 Sum_probs=74.4
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC----EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG----RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG 80 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg 80 (121)
..+-.|.-||.+-||+... ..|.++|+ +|+.|-.+.++++ .+++|-.||++.+|+-..... -.++....
T Consensus 118 ~LlAtggaD~~v~VWdi~~--~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl~~~~~H 191 (775)
T KOG0319|consen 118 TLLATGGADGRVKVWDIKN--GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CLHTMILH 191 (775)
T ss_pred ceEEeccccceEEEEEeeC--CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch----HHHHHHhh
Confidence 4556677899999999887 57999996 7899999998865 367899999999984432211 01112233
Q ss_pred CCCCceeEeeeeC--CEEEEEeCCe-EEEEeCCCCcEEEEEE
Q psy16019 81 LPHHSVRSLAAVY--NKVWCGYKNK-IHVVDPKSLDVIRPVT 119 (121)
Q Consensus 81 ~~~~pV~~m~~v~--~~lw~~~gn~-I~Vi~~~tl~i~~~~~ 119 (121)
. ..|++|...+ .++-.+++++ |.|-|..+.+..+.++
T Consensus 192 ~--S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp 231 (775)
T KOG0319|consen 192 K--SAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP 231 (775)
T ss_pred h--hheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec
Confidence 3 6788888774 6777777754 6777776666655554
No 153
>KOG0643|consensus
Probab=93.99 E-value=2.5 Score=33.58 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=69.5
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe-CCEEEEEecC------CcEEEEEcCCCCC-CCCCCceEEE
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV-QGRVVCALAD------GSVAIFRRGPDGQ-WDLSKYHTVT 78 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~-~~~v~v~Lan------G~l~Vy~r~~~g~-wd~~~~~~i~ 78 (121)
.+-.|+-|..+.+|+... -|++.+++.+.+|-..-+. ++..+++..| +.|.+|+-..+.. -+-++ .+++
T Consensus 66 ~liTGSAD~t~kLWDv~t--Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e-p~~k 142 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVET--GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE-PYLK 142 (327)
T ss_pred eeeeccccceeEEEEcCC--CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC-ceEE
Confidence 455688889999999887 5889999999988777764 3344444444 6689997654322 12222 2445
Q ss_pred eCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCC-cEEE
Q psy16019 79 LGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSL-DVIR 116 (121)
Q Consensus 79 lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl-~i~~ 116 (121)
+-.|...+.++.-- ++.|-+|-. .+|.+.|+.++ +...
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~ 184 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVD 184 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeee
Confidence 55553455554433 566666655 68999999996 4433
No 154
>KOG0316|consensus
Probab=93.90 E-value=0.51 Score=36.91 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=72.9
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH 83 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~ 83 (121)
..+-.|+-||.+..|+... -.+-+=-+.+||+|+.+. .+.++++.-|++|-...+..+. =+.+++=.+= -.
T Consensus 156 heIvaGS~DGtvRtydiR~---G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk--lL~sYkGhkn--~e 228 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRK---GTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK--LLKSYKGHKN--ME 228 (307)
T ss_pred cEEEeeccCCcEEEEEeec---ceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhH--HHHHhccccc--ce
Confidence 3567889999999999775 223332456789999886 5689999999999999776543 1233322111 12
Q ss_pred CceeEeeee-CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 84 HSVRSLAAV-YNKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 84 ~pV~~m~~v-~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
+-++|-+.. ...+.-|+. .+||+.|.....+...|++
T Consensus 229 ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 229 YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred eeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence 455664444 344554555 6899999999888877765
No 155
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.82 E-value=2.9 Score=33.72 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=69.3
Q ss_pred CCCCeEEEEec-CCeEEEEECCcccceeeeeEecCCCEEEEEE--eCCEEEEEec---CCcEEEEEcCCCCCCCCCCceE
Q psy16019 3 SVLPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH--VQGRVVCALA---DGSVAIFRRGPDGQWDLSKYHT 76 (121)
Q Consensus 3 ~~~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~--~~~~v~v~La---nG~l~Vy~r~~~g~wd~~~~~~ 76 (121)
+.++.+++-+. +..|.+++... .++.+++.+......+.. ..+.+||+-+ |+++.++. ....++
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~--~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid--------~~t~~~ 152 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTAT--NTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID--------AATNKV 152 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCcc--cceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEe--------CCCCeE
Confidence 34555666664 48888888555 567777776644445554 4669999999 68888883 333333
Q ss_pred ---EEeCCCCCceeEeee--eCCEEEEEe--CCeEEEEeCCCCcEEE
Q psy16019 77 ---VTLGLPHHSVRSLAA--VYNKVWCGY--KNKIHVVDPKSLDVIR 116 (121)
Q Consensus 77 ---i~lg~~~~pV~~m~~--v~~~lw~~~--gn~I~Vi~~~tl~i~~ 116 (121)
+..|. .| .-+++ .++++|... .|.|.+||+.+..+.+
T Consensus 153 ~~~~~vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 153 TATIPVGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred EEEEecCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence 56666 56 33343 368899999 5899999998887763
No 156
>KOG0321|consensus
Probab=93.80 E-value=1 Score=39.27 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=64.8
Q ss_pred CCCCeEEEEecCCeEEEEECCcccce---------------------e-eeeE---e-----cCCCEEEEEEeCC-EEEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRR---------------------C-LHSI---Q-----LKDSVLNIVHVQG-RVVC 51 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~---------------------~-l~~~---~-----l~~~V~~i~~~~~-~v~v 51 (121)
..+.-.+.|..||.|.||++..+..+ . .+.+ + +..+|+-+.+.++ .+-.
T Consensus 155 ~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaS 234 (720)
T KOG0321|consen 155 TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLAS 234 (720)
T ss_pred CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeee
Confidence 45667889999999999997654310 0 0111 1 1124555555443 4444
Q ss_pred Eec-CCcEEEEEcCCCCCCCCCCceEE---------EeCCC---CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019 52 ALA-DGSVAIFRRGPDGQWDLSKYHTV---------TLGLP---HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI 115 (121)
Q Consensus 52 ~La-nG~l~Vy~r~~~g~wd~~~~~~i---------~lg~~---~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~ 115 (121)
|.| ||.+-|| |+..+... ++-.+ ..-+.||..- +..|++.|- |.||.+|..++.+-
T Consensus 235 aga~D~~iKVW--------DLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 235 AGAADSTIKVW--------DLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred ccCCCcceEEE--------eecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence 455 9999997 55444331 12111 2345566555 589999999 79999999988764
No 157
>KOG2096|consensus
Probab=93.75 E-value=2.3 Score=34.64 Aligned_cols=113 Identities=16% Similarity=0.195 Sum_probs=69.1
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeE--ecC-CCEEEEEEeCC--EEEEEecCCc-EEEEEcC--CCCCCCCCC
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI--QLK-DSVLNIVHVQG--RVVCALADGS-VAIFRRG--PDGQWDLSK 73 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~--~l~-~~V~~i~~~~~--~v~v~LanG~-l~Vy~r~--~~g~wd~~~ 73 (121)
+|....+-....|+.|.+|++.+...+....+ .++ |-.+-..+.++ .+.|++.+|+ |.||.-. .||.-.
T Consensus 95 sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~--- 171 (420)
T KOG2096|consen 95 SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS--- 171 (420)
T ss_pred cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC---
Confidence 56777888888999999999999765554444 455 55666676644 6888899986 9999764 444211
Q ss_pred ceEEEeC---CC---CCceeEeeeeCCEEEE---EeCCeEEEEeCCCCcEEEEE
Q psy16019 74 YHTVTLG---LP---HHSVRSLAAVYNKVWC---GYKNKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 74 ~~~i~lg---~~---~~pV~~m~~v~~~lw~---~~gn~I~Vi~~~tl~i~~~~ 118 (121)
.+.++.. -+ +-||-.+-+.++..+. +.+++|.+.+.. ++...++
T Consensus 172 ~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i 224 (420)
T KOG2096|consen 172 HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI 224 (420)
T ss_pred cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence 1112221 11 2455555555543332 233678777776 5555443
No 158
>KOG2106|consensus
Probab=93.74 E-value=0.98 Score=38.60 Aligned_cols=92 Identities=17% Similarity=0.305 Sum_probs=63.1
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLG 80 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg 80 (121)
.+.+-.|-.+|.|+||+-..+ +-..+...++..|+++.-. ++.+..|.-|-.|+. || ++++. +.+.
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~--------Wd-~~y~k~r~~elP 326 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIIL--------WD-DNYRKLRETELP 326 (626)
T ss_pred CCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEecCccEeecCccceEEe--------cc-ccccccccccCc
Confidence 456778888999999997553 2223333677899998865 445666666666666 56 44433 4554
Q ss_pred CCCCceeEeeeeCCEEEEEeC-CeEEE
Q psy16019 81 LPHHSVRSLAAVYNKVWCGYK-NKIHV 106 (121)
Q Consensus 81 ~~~~pV~~m~~v~~~lw~~~g-n~I~V 106 (121)
+.--|||.++.-...+++|.. |.|.-
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEE
Confidence 445799999999877999877 66653
No 159
>KOG1272|consensus
Probab=93.62 E-value=0.24 Score=41.70 Aligned_cols=91 Identities=22% Similarity=0.260 Sum_probs=70.8
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCce-EEEeCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYH-TVTLGL 81 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~-~i~lg~ 81 (121)
.-+.+|.-+|.+..||..+ ++.|-.+ -++++|-+|...+ .+.-.+..|-.+-|| |+..+. +.+.-.
T Consensus 264 aVih~GhsnGtVSlWSP~s--kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIW--------DlR~~~ql~t~~t 333 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNS--KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIW--------DLRNFYQLHTYRT 333 (545)
T ss_pred ceEEEcCCCceEEecCCCC--cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEe--------eeccccccceeec
Confidence 3688999999999999888 6666555 5678999999875 466667778888885 777753 345555
Q ss_pred CCCceeEeeeeC-CEEEEEeCCeEEEE
Q psy16019 82 PHHSVRSLAAVY-NKVWCGYKNKIHVV 107 (121)
Q Consensus 82 ~~~pV~~m~~v~-~~lw~~~gn~I~Vi 107 (121)
+.|...+.+.. +-|.+|.|+.|.|.
T Consensus 334 -p~~a~~ls~SqkglLA~~~G~~v~iw 359 (545)
T KOG1272|consen 334 -PHPASNLSLSQKGLLALSYGDHVQIW 359 (545)
T ss_pred -CCCccccccccccceeeecCCeeeee
Confidence 38888998885 77899999998886
No 160
>KOG0302|consensus
Probab=93.58 E-value=0.32 Score=40.05 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=47.9
Q ss_pred CeEEEEecCCeEEEEECCccc-ceeeeeEec-CCCEEEEEEe---CCEEEEEecCCcEEEEEcC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQW-RRCLHSIQL-KDSVLNIVHV---QGRVVCALADGSVAIFRRG 64 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~-~~~l~~~~l-~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~ 64 (121)
+.+--|.+||.+.|+++...- .+.+.+++- .++|+||.++ ..-+-|+.+|.++++|.-.
T Consensus 315 ~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 315 PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 457789999999999988742 357888865 4899999998 5567788899999999764
No 161
>KOG0295|consensus
Probab=93.44 E-value=1.3 Score=36.27 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=72.2
Q ss_pred EEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC-----------------CEEEEEecCCcEEEEEcCCCCCCCC
Q psy16019 10 LGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-----------------GRVVCALADGSVAIFRRGPDGQWDL 71 (121)
Q Consensus 10 iGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-----------------~~v~v~LanG~l~Vy~r~~~g~wd~ 71 (121)
-+++|..+.+|.+.. ++|+..++-. -+|-||.... ...++|.-|+++-+ ||+
T Consensus 252 s~s~dqtl~vW~~~t--~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~--------wdv 321 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVAT--KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI--------WDV 321 (406)
T ss_pred ecCCCceEEEEEecc--chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE--------Eec
Confidence 345678888888777 5666666433 4688877541 24666666777766 577
Q ss_pred CCc-eEEEeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019 72 SKY-HTVTLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 72 ~~~-~~i~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~ 120 (121)
..+ .+++++.-..=||.+++. +++--++|. ..+.|-|..+++-++.+++
T Consensus 322 ~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 322 STGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred cCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence 776 446887656899999999 466666666 5799999999999988764
No 162
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.35 E-value=0.42 Score=27.63 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=29.0
Q ss_pred ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCC
Q psy16019 34 QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQW 69 (121)
Q Consensus 34 ~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~w 69 (121)
.+++.|.++.+++ +.+.+|..||.|.+||-+-...|
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qriw 46 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRIW 46 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCcc
Confidence 5677899999875 57999999999999988544445
No 163
>KOG1587|consensus
Probab=93.25 E-value=0.71 Score=39.67 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=41.3
Q ss_pred CeEEEEECCcccceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCC
Q psy16019 15 GSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFRRGP 65 (121)
Q Consensus 15 g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~ 65 (121)
+.++||+..++ .+....+.-+.+|+|++++ .+.+..|+-||+|++|.-..
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~ 274 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRK 274 (555)
T ss_pred ceEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccC
Confidence 47999999985 4566677888999999985 67899999999999985543
No 164
>KOG0322|consensus
Probab=93.22 E-value=0.92 Score=35.96 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=70.4
Q ss_pred CCeEEEEecCCeEEEEECCcccc---------eeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCC-CCCCCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWR---------RCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPD-GQWDLS 72 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~---------~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~-g~wd~~ 72 (121)
+..+..|-|+|.+.+|++.+..+ -+..-..+..+|+++-|.. ++=..|.++-.++.|+-+.+ | .+.
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g--slq 242 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG--SLQ 242 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC--ccc
Confidence 45678899999999999887422 1111122335888888862 34456677777999987643 3 344
Q ss_pred CceEEEeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEE
Q psy16019 73 KYHTVTLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIR 116 (121)
Q Consensus 73 ~~~~i~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~ 116 (121)
-++.+++-+|. |.-+.+- ++++.+..| ++|.|++-.|+....
T Consensus 243 ~~~e~~lknpG--v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 243 IRKEITLKNPG--VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA 287 (323)
T ss_pred ccceEEecCCC--ccceEEccCCcEEeecccCCcEEEEEeccCCchh
Confidence 45667777752 2222222 566777666 799999999987653
No 165
>KOG0264|consensus
Probab=93.17 E-value=0.79 Score=38.03 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=65.8
Q ss_pred CCeEEEEecCCeEEEEECCcccc--e---eeeeEe-cCCCEEEEEEe--CCEEEEEecCCc-EEEEEcCCCCCCCCCCce
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWR--R---CLHSIQ-LKDSVLNIVHV--QGRVVCALADGS-VAIFRRGPDGQWDLSKYH 75 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~--~---~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~-l~Vy~r~~~g~wd~~~~~ 75 (121)
..++.-|.+++.|.+|+....-+ + ....++ +.++|-+..++ ...+|.+.+|+. |.++.-.. |..+..+
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~---~~~~~~~ 266 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS---NTSKPSH 266 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC---CCCCCcc
Confidence 35778889999999999766433 1 223343 33677776654 456888777755 55542221 1112223
Q ss_pred EEEeCCCCCceeEeeeeC--CEEEE-EeC-CeEEEEeCCCCcE
Q psy16019 76 TVTLGLPHHSVRSLAAVY--NKVWC-GYK-NKIHVVDPKSLDV 114 (121)
Q Consensus 76 ~i~lg~~~~pV~~m~~v~--~~lw~-~~g-n~I~Vi~~~tl~i 114 (121)
.+.-.+ .+|.|+.... +.+-+ |+. +.|.++|.++|..
T Consensus 267 ~~~ah~--~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 267 SVKAHS--AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK 307 (422)
T ss_pred cccccC--CceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence 344444 8999999883 44444 443 6899999999764
No 166
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.08 E-value=2.7 Score=31.13 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=60.8
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE-eCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEe--
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH-VQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTL-- 79 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~-~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~l-- 79 (121)
.+...|+-...|.|+.++... .....+.+|+++-.... .++.+|++..+|. .++... .+ .... ...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~---~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~~-~~~d~~-~g-----~~~~~~~~~~ 80 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDT---GEVEVIDLPGPNGMAFDRPDGRLYVADSGGI-AVVDPD-TG-----KVTVLADLPD 80 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTT---TEEEEEESSSEEEEEEECTTSEEEEEETTCE-EEEETT-TT-----EEEEEEEEET
T ss_pred CCEEEEEEcCCCEEEEEECCC---CeEEEEecCCCceEEEEccCCEEEEEEcCce-EEEecC-CC-----cEEEEeeccC
Confidence 455677777899999999877 33444677775544444 4789999987555 555221 12 1112 233
Q ss_pred CC-CCCceeEeeee-CCEEEEEeC----------CeEEEEeCCCCcEEEE
Q psy16019 80 GL-PHHSVRSLAAV-YNKVWCGYK----------NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 80 g~-~~~pV~~m~~v-~~~lw~~~g----------n~I~Vi~~~tl~i~~~ 117 (121)
+. +.....-+.+. .+.||++.. .+|+.+++. +++..-
T Consensus 81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 22 11222234444 478999876 359999988 666543
No 167
>KOG0642|consensus
Probab=93.07 E-value=0.5 Score=40.40 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=66.8
Q ss_pred CCCeEEEEecCCeEEEEECCccc------ceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCC-CCCCCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQW------RRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDG-QWDLSK 73 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~------~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g-~wd~~~ 73 (121)
..|-+..+++||.|-+|++.... -+++++++ +.++|+|..+.. ..+|-|..||+|.-|.-...+ +.|..+
T Consensus 305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence 46788999999999999983321 13577885 448999999864 489999999999999665332 223222
Q ss_pred ceEE---EeCCCCCceeEeeeeC--CEE-EEEeCCeEEEEeCCC
Q psy16019 74 YHTV---TLGLPHHSVRSLAAVY--NKV-WCGYKNKIHVVDPKS 111 (121)
Q Consensus 74 ~~~i---~lg~~~~pV~~m~~v~--~~l-w~~~gn~I~Vi~~~t 111 (121)
|.++ =+|. ..-|.-++... ++| =|+.-..++..++..
T Consensus 385 p~vl~~~l~Gh-tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 385 PSVLSGTLLGH-TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred cchhccceecc-ccceeeeeecccccceeeecCCceEEeeccCC
Confidence 3232 1222 24555555553 333 222235666665543
No 168
>KOG0282|consensus
Probab=93.04 E-value=0.43 Score=40.16 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=76.4
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP 82 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~ 82 (121)
-.+.-|+.|+.|+||++.+ .++|+.++..+ .+|.++.+. +.+.+.+.=|+.|-. ||++.-+.+.=...
T Consensus 228 hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl--------wDtETG~~~~~f~~ 298 (503)
T KOG0282|consen 228 HLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL--------WDTETGQVLSRFHL 298 (503)
T ss_pred eEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeee--------eccccceEEEEEec
Confidence 3567788999999999888 47899998755 799998876 346777888888877 58887766422222
Q ss_pred CCceeEeeee--C-CEEEEEeC-CeEEEEeCCCCcEEE
Q psy16019 83 HHSVRSLAAV--Y-NKVWCGYK-NKIHVVDPKSLDVIR 116 (121)
Q Consensus 83 ~~pV~~m~~v--~-~~lw~~~g-n~I~Vi~~~tl~i~~ 116 (121)
..++.|+... + +.+-+|-. .+|.-.|..+.++.+
T Consensus 299 ~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 299 DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 3678888877 3 56666666 589999999998764
No 169
>KOG1523|consensus
Probab=92.96 E-value=1.6 Score=35.28 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=75.9
Q ss_pred CCCeEEEEecCCeEEEEECCccc-ceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQW-RRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~-~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
....+-++.++..++||+..... -+..++++.+ ..|++|... .|++.-+..|-.=.||+..++|.|. ..+-++.+
T Consensus 21 drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wk-ptlvLlRi 99 (361)
T KOG1523|consen 21 DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWK-PTLVLLRI 99 (361)
T ss_pred CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeec-cceeEEEe
Confidence 44567789999999999976643 3567788766 477777764 6789999999999999988899996 44555666
Q ss_pred CCCCCceeEee--eeCCEEEEEeCCeEEEEe
Q psy16019 80 GLPHHSVRSLA--AVYNKVWCGYKNKIHVVD 108 (121)
Q Consensus 80 g~~~~pV~~m~--~v~~~lw~~~gn~I~Vi~ 108 (121)
.. .++|+. +.++++..|+|.++.-+.
T Consensus 100 Nr---AAt~V~WsP~enkFAVgSgar~isVc 127 (361)
T KOG1523|consen 100 NR---AATCVKWSPKENKFAVGSGARLISVC 127 (361)
T ss_pred cc---ceeeEeecCcCceEEeccCccEEEEE
Confidence 65 566765 457899999997665543
No 170
>KOG0772|consensus
Probab=92.92 E-value=0.59 Score=39.99 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=68.6
Q ss_pred CCCeEEEEecCCeEEEEECCccccee---eeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRC---LHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT- 76 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~---l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~- 76 (121)
..+.+-.|..||+|.+|+........ ++.-.++ ..|+||.+. .+++..=.-|++|-|| |+..++-
T Consensus 328 dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW--------DLrq~kkp 399 (641)
T KOG0772|consen 328 DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW--------DLRQFKKP 399 (641)
T ss_pred CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee--------eccccccc
Confidence 34556678899999999986644433 3333445 489999976 4566666677777775 7766633
Q ss_pred E--EeCCC-C--------CceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 77 V--TLGLP-H--------HSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 77 i--~lg~~-~--------~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
+ ..|-| . .|=-.|.+.+..+=-++. ...+++|+.|+++...+.+
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 1 22221 1 233334444444444555 4699999999999887643
No 171
>KOG2445|consensus
Probab=92.90 E-value=1.4 Score=35.54 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=64.6
Q ss_pred EEEecCCeEEEEECCccccee----eeeEe--------cCCCEEEEEEeC----CEEEEEecCC------cEEEEEcCCC
Q psy16019 9 WLGSQNGSVFVHSAVSQWRRC----LHSIQ--------LKDSVLNIVHVQ----GRVVCALADG------SVAIFRRGPD 66 (121)
Q Consensus 9 wiGt~~g~I~v~~~~~~~~~~----l~~~~--------l~~~V~~i~~~~----~~v~v~LanG------~l~Vy~r~~~ 66 (121)
-....||.|.||.+.+...-. .+.|+ ...+-+|+-.+. ...+|..+|- .+.||+++.+
T Consensus 130 A~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~ 209 (361)
T KOG2445|consen 130 AAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN 209 (361)
T ss_pred EEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC
Confidence 344579999999998864322 12233 112556776653 2466666665 8999999877
Q ss_pred C-CCCCCCceEEEeCCCCCceeEeeeeC------CEEEEEeCCeEEEEeCCC
Q psy16019 67 G-QWDLSKYHTVTLGLPHHSVRSLAAVY------NKVWCGYKNKIHVVDPKS 111 (121)
Q Consensus 67 g-~wd~~~~~~i~lg~~~~pV~~m~~v~------~~lw~~~gn~I~Vi~~~t 111 (121)
+ .|- ++-+|-+-..|||.+.... --|..||++.|+|++.+.
T Consensus 210 ~rKw~----kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~ 257 (361)
T KOG2445|consen 210 GRKWL----KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKV 257 (361)
T ss_pred cceee----eehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEee
Confidence 6 452 1113334458999988773 457889998899987764
No 172
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.87 E-value=4 Score=32.43 Aligned_cols=112 Identities=11% Similarity=0.216 Sum_probs=65.8
Q ss_pred CCeEEEEecC------------CeEEEEECCcccceeeee-EecCCCEEEEEEeCCEEEEEecC-CcEEEEEcC-CCCCC
Q psy16019 5 LPTMWLGSQN------------GSVFVHSAVSQWRRCLHS-IQLKDSVLNIVHVQGRVVCALAD-GSVAIFRRG-PDGQW 69 (121)
Q Consensus 5 ~~tvwiGt~~------------g~I~v~~~~~~~~~~l~~-~~l~~~V~~i~~~~~~v~v~Lan-G~l~Vy~r~-~~g~w 69 (121)
++.+|.||-. |.||-++......+.+.. +..|..+ ++-..+..+|++-.. +.|..|.-. .++
T Consensus 121 dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGl-a~SpDg~tly~aDT~~~~i~r~~~d~~~g-- 197 (307)
T COG3386 121 DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGL-AFSPDGKTLYVADTPANRIHRYDLDPATG-- 197 (307)
T ss_pred CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCce-EECCCCCEEEEEeCCCCeEEEEecCcccC--
Confidence 4678888866 567777754322333333 5555544 444456688888876 677777655 333
Q ss_pred CCCCceE-EEeC-CCCCceeEeeeeCCEEE-EEeCC--eEEEEeCCCCcEEEEEEe
Q psy16019 70 DLSKYHT-VTLG-LPHHSVRSLAAVYNKVW-CGYKN--KIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 70 d~~~~~~-i~lg-~~~~pV~~m~~v~~~lw-~~~gn--~I~Vi~~~tl~i~~~~~~ 120 (121)
+..+... +... .+..|=-.-.-.++.+| ++..+ +|.+++++ ++....+++
T Consensus 198 ~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 198 PIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred ccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 2223222 2221 23455544444579999 55554 99999998 777766553
No 173
>KOG4190|consensus
Probab=92.87 E-value=0.21 Score=43.26 Aligned_cols=105 Identities=19% Similarity=0.288 Sum_probs=68.6
Q ss_pred EEEecCCeEEEEECCcccceeeeeE-ecC--CCEEEEEEeCC----EEEEE-ecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019 9 WLGSQNGSVFVHSAVSQWRRCLHSI-QLK--DSVLNIVHVQG----RVVCA-LADGSVAIFRRGPDGQWDLSKYHTVTLG 80 (121)
Q Consensus 9 wiGt~~g~I~v~~~~~~~~~~l~~~-~l~--~~V~~i~~~~~----~v~v~-LanG~l~Vy~r~~~g~wd~~~~~~i~lg 80 (121)
.+.+-||.||+|+.-- -+.+.++ .-| +++.-|++.++ .+.+| .+..++-.|.-.. +.| +++.++-.-.
T Consensus 798 ~i~ScD~giHlWDPFi--gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce~-~~E~kVcna~ 873 (1034)
T KOG4190|consen 798 SIASCDGGIHLWDPFI--GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS-CEW-TCELKVCNAP 873 (1034)
T ss_pred eeeeccCcceeecccc--cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc-ccc-eeeEEeccCC
Confidence 6777899999998443 1233322 233 45555555433 45666 6778888885433 445 2444444444
Q ss_pred CCCCceeEeeee--CCEEEEEeCC-eEEEEeCCCCcEEEE
Q psy16019 81 LPHHSVRSLAAV--YNKVWCGYKN-KIHVVDPKSLDVIRP 117 (121)
Q Consensus 81 ~~~~pV~~m~~v--~~~lw~~~gn-~I~Vi~~~tl~i~~~ 117 (121)
-|+.-+||+++. ++.+.+|-.| .|.++|+.++++.++
T Consensus 874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 874 GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS 913 (1034)
T ss_pred CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc
Confidence 456779999988 5788888775 799999999997764
No 174
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=92.86 E-value=4.3 Score=36.96 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=56.8
Q ss_pred CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCC
Q psy16019 37 DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKS 111 (121)
Q Consensus 37 ~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~t 111 (121)
+.|.++.|. .+.+++++++|.|.+++-..+ .++..+=.+|....-|.||.-.. .-|....| +++.++ ..+
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~----~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m-t~~ 150 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPD----PDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLM-TRD 150 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCC----CCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE-ecc
Confidence 579999987 457999999999999965542 22333323455557999999884 56788888 578888 678
Q ss_pred CcEEEEEE
Q psy16019 112 LDVIRPVT 119 (121)
Q Consensus 112 l~i~~~~~ 119 (121)
+++.....
T Consensus 151 fd~i~E~~ 158 (928)
T PF04762_consen 151 FDPISEVP 158 (928)
T ss_pred ceEEEEee
Confidence 88776654
No 175
>KOG0307|consensus
Probab=92.82 E-value=0.25 Score=44.96 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=73.5
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecC-C--CEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCc----e
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-D--SVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKY----H 75 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~--~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~----~ 75 (121)
..+.-|+.+|+..||+++. ++.+-.+... . .+-.|.++.+ ++.+|..|-..=|+ -.||+... +
T Consensus 175 hILAS~s~sg~~~iWDlr~--~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi-----qlWDlR~assP~k 247 (1049)
T KOG0307|consen 175 HILASGSPSGRAVIWDLRK--KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI-----QLWDLRFASSPLK 247 (1049)
T ss_pred HHhhccCCCCCceeccccC--CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee-----EeecccccCCchh
Confidence 3455678899999999987 3444333322 2 2446677643 89999988777666 56886543 3
Q ss_pred EEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019 76 TVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 76 ~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~ 120 (121)
+++... .-|-+|.-. +.++-.+|| |+|++-|++|+++..+|.+
T Consensus 248 ~~~~H~--~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 248 ILEGHQ--RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred hhcccc--cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 333333 677788777 357877777 8999999999999988765
No 176
>KOG1332|consensus
Probab=92.81 E-value=0.44 Score=37.37 Aligned_cols=62 Identities=24% Similarity=0.443 Sum_probs=46.2
Q ss_pred EecCCeEEEEECCcc-cceeeeeE-ecCCCEEEEEEeCC----EEEEEecCCcEEEEEcCCCCCCCCCC
Q psy16019 11 GSQNGSVFVHSAVSQ-WRRCLHSI-QLKDSVLNIVHVQG----RVVCALADGSVAIFRRGPDGQWDLSK 73 (121)
Q Consensus 11 Gt~~g~I~v~~~~~~-~~~~l~~~-~l~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g~wd~~~ 73 (121)
.+-||++.|+.-... |.| .... .+.++|.++..... .++.|.+||+|-|++-+.+|.|+...
T Consensus 76 csYDgkVIiWke~~g~w~k-~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGRWTK-AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred eecCceEEEEecCCCchhh-hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 356999999985543 333 2222 45589999987543 68999999999999999999998654
No 177
>KOG0267|consensus
Probab=92.77 E-value=0.31 Score=42.89 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=75.4
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEE--EecCCcEEEEEcCCCCCCCCCCc-eEEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVC--ALADGSVAIFRRGPDGQWDLSKY-HTVT 78 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v--~LanG~l~Vy~r~~~g~wd~~~~-~~i~ 78 (121)
..+.++-.|+.+|.|-+|++.+ -+.++++. +.+.++++.++...=|. |..|+.+.+| |...- +.-.
T Consensus 80 ~~E~LlaagsasgtiK~wDlee--Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iw--------D~Rk~Gc~~~ 149 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEE--AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIW--------DIRKKGCSHT 149 (825)
T ss_pred cchhhhcccccCCceeeeehhh--hhhhhhhhccccCcceeeeccceEEeccccccccceeh--------hhhccCceee
Confidence 3455777899999999999998 35566654 34677777888777777 7777877775 55421 2222
Q ss_pred eCCCCCceeEeeeeCCEEEEEeC---CeEEEEeCCCCcEEEEEE
Q psy16019 79 LGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 79 lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~tl~i~~~~~ 119 (121)
.+.-..-|+++.+..+-=|.+.| +.|.|.|..-+++.+.|+
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 22223678888888766677666 579999998888887775
No 178
>KOG0302|consensus
Probab=92.70 E-value=1.8 Score=35.73 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=58.7
Q ss_pred EEEecCCeEEEEECCcccce-eeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCc------eEEEe
Q psy16019 9 WLGSQNGSVFVHSAVSQWRR-CLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKY------HTVTL 79 (121)
Q Consensus 9 wiGt~~g~I~v~~~~~~~~~-~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~------~~i~l 79 (121)
--++=||.|-|++....-|+ ++-+=.+++-|--|-++ ...+-.|.-||++-|+ |+... ..++.
T Consensus 274 aScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iw--------DLR~~~~~~pVA~fk~ 345 (440)
T KOG0302|consen 274 ASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIW--------DLRQFKSGQPVATFKY 345 (440)
T ss_pred EeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEE--------EhhhccCCCcceeEEe
Confidence 34566999999999885444 44442344444445554 3445556667999997 44443 23455
Q ss_pred CCCCCceeEeeee--CCEEEEEeC--CeEEEEeCC
Q psy16019 80 GLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPK 110 (121)
Q Consensus 80 g~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~ 110 (121)
.. .||+|+.-. +..+.++.| |+|.+-|..
T Consensus 346 Hk--~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 346 HK--APITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred cc--CCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 55 899999977 455555444 899988753
No 179
>KOG1517|consensus
Probab=92.60 E-value=2.3 Score=39.43 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=64.8
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecC--CCEEEEEE---eCCEEEEEecCCcEEEEEcCCCCCCCCCCc-eEEEeC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVH---VQGRVVCALADGSVAIFRRGPDGQWDLSKY-HTVTLG 80 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~---~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i~lg 80 (121)
.+.++.+-..|-||++.. .++.+.+... ..|+.+.. ++|.+.||.+||.|-+|.|.-. ++ ..+..-
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~--E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a------~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHK--EQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMA------PPDSLVCVY 1250 (1387)
T ss_pred eEEecCCeeEEEEEeccc--ceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccC------Cccccceee
Confidence 456666677888999876 3456655443 35665553 4789999999999999987532 12 122222
Q ss_pred ---CCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCC
Q psy16019 81 ---LPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSL 112 (121)
Q Consensus 81 ---~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl 112 (121)
...+||--+.+-. ++|..|+. +.|.++|...-
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 2234566555542 68999999 58999999874
No 180
>KOG2695|consensus
Probab=92.59 E-value=0.27 Score=40.13 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=50.0
Q ss_pred CCCCeEEEEecCCeEEEEECCccc---ceeeeeEecCCCEEEEEE---eCCEEEEEecCCcEEEEEc
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQW---RRCLHSIQLKDSVLNIVH---VQGRVVCALADGSVAIFRR 63 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~---~~~l~~~~l~~~V~~i~~---~~~~v~v~LanG~l~Vy~r 63 (121)
...|.|.-|..+|.|+++++...- ..+.+.+-++++|+|++. .+.++.|+.-+|+|..|+-
T Consensus 262 ~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 262 GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred ccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 346889999999999999988842 136788899999999764 5678999999999999854
No 181
>KOG0269|consensus
Probab=92.42 E-value=0.56 Score=41.58 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=45.4
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCCEEEEEec--CCcEEEE
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQGRVVCALA--DGSVAIF 61 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~~v~v~La--nG~l~Vy 61 (121)
.++.---+.++|.+..|++..+ +++...+ .+.++|+|+-++.|+.|.|.+ |+.+-||
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp-~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQP-DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred CCceEEEecCCceEEEeeccCc-hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 4556677889999999999985 5565555 566999999999999888765 6778886
No 182
>KOG0321|consensus
Probab=92.41 E-value=0.42 Score=41.61 Aligned_cols=96 Identities=18% Similarity=0.280 Sum_probs=65.0
Q ss_pred CeEEEEecCCeEEEEECCcccce-eeeeE---ecC-CCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceE--
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRR-CLHSI---QLK-DSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHT-- 76 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~-~l~~~---~l~-~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-- 76 (121)
..+.++-|+|.|-+|+..+.--+ +..+| ..+ .+|++++...+ ++.-+++|-++-.| |++.-.+
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W--------dvk~s~l~G 136 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW--------DVKTSRLVG 136 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee--------eeccceeec
Confidence 47899999999999998773212 22333 233 69999998865 45666666666665 6666555
Q ss_pred --EEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCC
Q psy16019 77 --VTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPK 110 (121)
Q Consensus 77 --i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~ 110 (121)
+.+|. ..+|++++.. +..++|.-| +.|.|-|+.
T Consensus 137 ~~~~~GH-~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 137 GRLNLGH-TGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred ceeeccc-ccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 45666 3788888877 466676444 578877764
No 183
>KOG0265|consensus
Probab=92.35 E-value=3.3 Score=33.31 Aligned_cols=106 Identities=10% Similarity=0.128 Sum_probs=69.2
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T 78 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~ 78 (121)
+..+++--|.-|..|++|+..+.. +..+.++.. ++|+.+++. .+.+|.+.+|-+|.+| |.+.-+.+ +
T Consensus 57 P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w--------D~~tG~~~rk 127 (338)
T KOG0265|consen 57 PDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW--------DAETGKRIRK 127 (338)
T ss_pred CCCCeEeecCCcceEEEEeccccc-cceeeeccccceeEeeeeccCCCEEEEecCCceEEEE--------ecccceeeeh
Confidence 456677778889999999966532 334556665 799999986 5689999999999997 55544332 2
Q ss_pred eCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEE
Q psy16019 79 LGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 79 lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~ 117 (121)
.-.-..=|.+|.+. +-.|-|+-. .++.+.|..+-+-.+.
T Consensus 128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 21111334444433 456666555 5899999994443333
No 184
>KOG0275|consensus
Probab=92.27 E-value=5.4 Score=32.71 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=73.0
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEecC---CCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYH 75 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~ 75 (121)
+.....+--.+.||.+-||+... .+|+.+++-+ .+|..+... .....|.--..++.|. +....-
T Consensus 357 t~dG~~iisaSsDgtvkvW~~Kt--teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im--------n~qGQv 426 (508)
T KOG0275|consen 357 TDDGHHIISASSDGTVKVWHGKT--TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM--------NMQGQV 426 (508)
T ss_pred cCCCCeEEEecCCccEEEecCcc--hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE--------eccceE
Confidence 35567788889999999999887 6899998654 267666543 4466666666777776 233332
Q ss_pred EEEeCC--C--CCceeEee-eeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 76 TVTLGL--P--HHSVRSLA-AVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 76 ~i~lg~--~--~~pV~~m~-~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
+-++.+ . ..=|.|++ +-+.-+||.-. ...|.|+..++++|+.+.|
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV 477 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec
Confidence 323322 1 23455543 34566777544 5789999999999999876
No 185
>KOG0307|consensus
Probab=92.19 E-value=0.14 Score=46.47 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=65.4
Q ss_pred CeEEEEecCCeEEEEECCcc---cce-eeeeE-ecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQ---WRR-CLHSI-QLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHT- 76 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~---~~~-~l~~~-~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~- 76 (121)
+.+-=|.|||.|-+|+...- ... .+.+. +++++|+.+.++ +|.+-.|-.||.|.|| |++++..
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW--------Dlnn~~tP 152 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW--------DLNKPETP 152 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe--------ccCCcCCC
Confidence 34666889999999997762 112 35555 567899998886 3344455556999995 7777655
Q ss_pred EEeCC--CCCceeEeeeeC--CEEEEEeC--CeEEEEeCCCC
Q psy16019 77 VTLGL--PHHSVRSLAAVY--NKVWCGYK--NKIHVVDPKSL 112 (121)
Q Consensus 77 i~lg~--~~~pV~~m~~v~--~~lw~~~g--n~I~Vi~~~tl 112 (121)
.+.|+ ++.=|.|+.-+. .++.|+-+ +++.|-|.+--
T Consensus 153 ~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 153 FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 44443 245688888774 45555444 47888877654
No 186
>KOG0286|consensus
Probab=92.17 E-value=5.2 Score=32.15 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=73.8
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC-CEEEE-EecCCcEEEEEcCCCCCCCCCCce-EEEe
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-GRVVC-ALADGSVAIFRRGPDGQWDLSKYH-TVTL 79 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-~~v~v-~LanG~l~Vy~r~~~g~wd~~~~~-~i~l 79 (121)
..+|---|.-|+.-.+|+..+ -.|.++|.-+ +-|-.++|++ +.-|+ |..||+--.| |+..-+ +...
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~--~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRly--------DlRaD~~~a~y 267 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRS--GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLY--------DLRADQELAVY 267 (343)
T ss_pred CCCeEEecccccceeeeeccC--cceeEeecccccccceEEEccCCCeeeecCCCceeEEE--------eecCCcEEeee
Confidence 456777788899999999998 4899999654 6777888874 34555 5556889999 554432 2233
Q ss_pred CCC--CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019 80 GLP--HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 80 g~~--~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~ 118 (121)
..+ ..||.+++.. +.-|++|+. .++.|-|.-..+..-.+
T Consensus 268 s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 268 SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred ccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe
Confidence 322 5799998877 566788888 47888887666554433
No 187
>KOG0640|consensus
Probab=92.13 E-value=0.51 Score=38.24 Aligned_cols=104 Identities=13% Similarity=0.216 Sum_probs=73.9
Q ss_pred eEEEEecCCeEEEEECCccc-ceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC-
Q psy16019 7 TMWLGSQNGSVFVHSAVSQW-RRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP- 82 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~-~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~- 82 (121)
.+--|+.|++|-+|+...+. |+-.+.++-..+|.||-++ ++.+.||..--++-+| |++.++-+.=..|
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY--------dv~T~QcfvsanPd 257 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY--------DVNTYQCFVSANPD 257 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE--------eccceeEeeecCcc
Confidence 34568899999999976643 3444555555689999987 5689999999999999 7777655432334
Q ss_pred ---CCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019 83 ---HHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 83 ---~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~~ 118 (121)
...|.+.-.. .+.||+... ..|.+.|-.+.+-.++|
T Consensus 258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~ 299 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI 299 (430)
T ss_pred cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHH
Confidence 4578887777 478887444 57999988776654443
No 188
>KOG0973|consensus
Probab=92.08 E-value=0.5 Score=42.76 Aligned_cols=57 Identities=25% Similarity=0.254 Sum_probs=46.7
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeE-ecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSI-QLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGP 65 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~ 65 (121)
.+-+|++|++|.||++.. .+++--+ .+- .+|.++... +-.+||+.-||+|+++.-..
T Consensus 296 i~AvgSqDrSlSVW~T~~--~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 296 IAAVGSQDRSLSVWNTAL--PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEEecCCccEEEEecCC--CCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 577899999999999865 5665544 454 689999998 55899999999999998764
No 189
>KOG0263|consensus
Probab=92.07 E-value=0.45 Score=41.74 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=64.3
Q ss_pred EecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCCE--EEEEecCCcEEEEEcCCCCCCCCCCceEEEe--CCCCCc
Q psy16019 11 GSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQGR--VVCALADGSVAIFRRGPDGQWDLSKYHTVTL--GLPHHS 85 (121)
Q Consensus 11 Gt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~~--v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l--g~~~~p 85 (121)
|+.|+.--+|+... .+.+..+.-+ +-|-|..+++|. ++-|.+|-++-+| |...-..+.+ |. ..|
T Consensus 511 as~D~tArLWs~d~--~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlW--------Dv~~G~~VRiF~GH-~~~ 579 (707)
T KOG0263|consen 511 ASHDQTARLWSTDH--NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLW--------DVSTGNSVRIFTGH-KGP 579 (707)
T ss_pred cCCCceeeeeeccc--CCchhhhcccccccceEEECCcccccccCCCCceEEEE--------EcCCCcEEEEecCC-CCc
Confidence 44566666676665 3555555434 678889998765 5555566667664 6655434322 32 489
Q ss_pred eeEeeeeCCEEEEEeC---CeEEEEeCCCCcEEEE
Q psy16019 86 VRSLAAVYNKVWCGYK---NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 86 V~~m~~v~~~lw~~~g---n~I~Vi~~~tl~i~~~ 117 (121)
|.+|.....-.|.|+| +.|.+-|..++++...
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~ 614 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ 614 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh
Confidence 9999999777777777 6899999998776543
No 190
>KOG0263|consensus
Probab=91.82 E-value=2.1 Score=37.69 Aligned_cols=96 Identities=20% Similarity=0.172 Sum_probs=65.6
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEec--CCcEEEEEcCCCCCCCCCCceEE-E-e
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALA--DGSVAIFRRGPDGQWDLSKYHTV-T-L 79 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~La--nG~l~Vy~r~~~g~wd~~~~~~i-~-l 79 (121)
.+.|--|+-|..+.+|+.... .++..|. +.++|+++.+..+-.|.|++ ||.|.+| |+.+-..+ . .
T Consensus 547 s~Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW--------Dl~~~~~v~~l~ 616 (707)
T KOG0263|consen 547 SNYVATGSSDRTVRLWDVSTG--NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW--------DLANGSLVKQLK 616 (707)
T ss_pred ccccccCCCCceEEEEEcCCC--cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEE--------EcCCCcchhhhh
Confidence 345667888999999997763 3444443 56899999999776666655 5888886 77665443 2 2
Q ss_pred CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCC
Q psy16019 80 GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKS 111 (121)
Q Consensus 80 g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~t 111 (121)
|. ...|.+|... ++-|..|.+ |.|.+-|...
T Consensus 617 ~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 617 GH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cc-cCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 32 4788888887 344555544 7899887654
No 191
>KOG0973|consensus
Probab=91.77 E-value=3.5 Score=37.56 Aligned_cols=109 Identities=12% Similarity=0.178 Sum_probs=70.3
Q ss_pred CCCCCeEEEEecCCeEEEEECCc-----------------ccceeeeeE-ecCCCEEEEEEeCC-EEEE-EecCCcEEEE
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVS-----------------QWRRCLHSI-QLKDSVLNIVHVQG-RVVC-ALADGSVAIF 61 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~-----------------~~~~~l~~~-~l~~~V~~i~~~~~-~v~v-~LanG~l~Vy 61 (121)
+.....+..|++|+-|.||.-.. +|| +...+ .++.-|+++.+..+ ..+| +..|++|.+|
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk-~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK-VVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceee-EEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence 45567889999999999987551 122 23344 45679999999833 3444 4567899998
Q ss_pred EcCCCCCCCCCCceEEEe-CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 62 RRGPDGQWDLSKYHTVTL-GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 62 ~r~~~g~wd~~~~~~i~l-g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
+...++.+++ -.-+.+|.-+..- ++.+.--.. ..|.|....+..++|++.
T Consensus 157 --------n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 157 --------NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred --------ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence 4445544322 2223566655544 455554444 479999988899998863
No 192
>KOG1188|consensus
Probab=91.74 E-value=1.7 Score=35.38 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=68.1
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeC----CEEEEEecCCcEEEEEcCCCCCCCCCCce---E
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQ----GRVVCALADGSVAIFRRGPDGQWDLSKYH---T 76 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~----~~v~v~LanG~l~Vy~r~~~g~wd~~~~~---~ 76 (121)
+..|-+|-.+|.|.+|+-.. -+.+..++- |+.+-.+.+.+ .-|++|..||+|-+| |+.... .
T Consensus 40 e~~vav~lSngsv~lyd~~t--g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w--------D~Rs~~e~a~ 109 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGT--GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW--------DIRSQAESAR 109 (376)
T ss_pred ceeEEEEecCCeEEEEeccc--hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE--------Eeecchhhhh
Confidence 34588999999999999776 356777764 46666777654 579999999999998 444332 2
Q ss_pred EEe-CCCCCceeEeeee--CCEEEEEeC-----CeEEEEeCCCCc
Q psy16019 77 VTL-GLPHHSVRSLAAV--YNKVWCGYK-----NKIHVVDPKSLD 113 (121)
Q Consensus 77 i~l-g~~~~pV~~m~~v--~~~lw~~~g-----n~I~Vi~~~tl~ 113 (121)
+.. +.|+.|-.|+... ++.+.||.- -.|++.|.+.-+
T Consensus 110 ~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q 154 (376)
T KOG1188|consen 110 ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ 154 (376)
T ss_pred eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc
Confidence 333 3345789999886 455566644 256666766544
No 193
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=91.65 E-value=7.5 Score=33.35 Aligned_cols=103 Identities=11% Similarity=0.086 Sum_probs=67.7
Q ss_pred CCCeEEEEecCC-eEEEEECCcccceeeeeEecC-CCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 4 VLPTMWLGSQNG-SVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 4 ~~~tvwiGt~~g-~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
....+-+||.|| .|-||+.... ..+.+.-+ +.|+.++...+ ++.||--++.|.+++-.+ .++++|.=
T Consensus 370 ~~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn------gnv~~idk 440 (668)
T COG4946 370 DPEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN------GNVRLIDK 440 (668)
T ss_pred CCcceEEeccCCceEEEEecCCc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC------CCeeEecc
Confidence 344678999999 8889998763 23444334 67888887755 466666667788884322 23344332
Q ss_pred CCCCCceeEeeeeCCEEEEEeC-------CeEEEEeCCCCcEEE
Q psy16019 80 GLPHHSVRSLAAVYNKVWCGYK-------NKIHVVDPKSLDVIR 116 (121)
Q Consensus 80 g~~~~pV~~m~~v~~~lw~~~g-------n~I~Vi~~~tl~i~~ 116 (121)
+. ..=|.-+..+.+.=|.|++ -.|.++|+++.++-.
T Consensus 441 S~-~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 441 SE-YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred cc-cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 22 2345666677777788776 368999999888754
No 194
>KOG1587|consensus
Probab=91.55 E-value=2.5 Score=36.33 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=44.9
Q ss_pred CCeEEEEecCCeEEEEECCcccce-----eeeeEecCCCEEEEEEeC----CEEEEEecCCcEEEEE
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRR-----CLHSIQLKDSVLNIVHVQ----GRVVCALADGSVAIFR 62 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~-----~l~~~~l~~~V~~i~~~~----~~v~v~LanG~l~Vy~ 62 (121)
.+.|..|+.+|.|.+|+......+ +.+.-.++++|+.+.+.. ..+|.+.+||.|.-|+
T Consensus 255 p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 255 PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 457888999999999998875432 233445678999998753 4599999999999983
No 195
>KOG1407|consensus
Probab=91.46 E-value=3 Score=33.03 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=70.8
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE-e-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH-V-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~-~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
++...++.+|..|-.|-.++... .+.+++.+.+--+-.|.. . ++..|.-.++|.+-|.+-. .+++.. ++
T Consensus 115 sp~g~~~~~~~kdD~it~id~r~--~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-----sLkpv~--si 185 (313)
T KOG1407|consen 115 SPDGEYIAVGNKDDRITFIDART--YKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-----SLKPVQ--SI 185 (313)
T ss_pred cCCCCEEEEecCcccEEEEEecc--cceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc-----cccccc--cc
Confidence 35567888999999999999887 567777777644444444 3 3455566677999997322 122222 33
Q ss_pred CCCCCceeEeeee----CCEEEEEeCC-eEEEEeCCCCcEEEEE
Q psy16019 80 GLPHHSVRSLAAV----YNKVWCGYKN-KIHVVDPKSLDVIRPV 118 (121)
Q Consensus 80 g~~~~pV~~m~~v----~~~lw~~~gn-~I~Vi~~~tl~i~~~~ 118 (121)
.. +|..|+.+. ++.+..|..+ .+-.-|++-|--+|.|
T Consensus 186 ~A--H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 186 KA--HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred cc--CCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 33 677787765 6778888885 6777788777777765
No 196
>KOG4378|consensus
Probab=91.34 E-value=2.4 Score=36.36 Aligned_cols=72 Identities=7% Similarity=0.018 Sum_probs=46.8
Q ss_pred cCCeEEEEECCcccceeeeeEecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCc-eEEEeCCCCCceeEe
Q psy16019 13 QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKY-HTVTLGLPHHSVRSL 89 (121)
Q Consensus 13 ~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i~lg~~~~pV~~m 89 (121)
-|.+|++|+..+ ++...++.-..+-..+.+ .+..+.+|.++|.|..|.-.. ...| ++++..+ .+|+|+
T Consensus 229 ~Dkki~~yD~~s--~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~-----~k~Pv~v~sah~--~sVt~v 299 (673)
T KOG4378|consen 229 YDKKINIYDIRS--QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS-----TKAPVAVRSAHD--ASVTRV 299 (673)
T ss_pred ccceEEEeeccc--ccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc-----CCCCceEeeecc--cceeEE
Confidence 478999999887 554444432223333344 456899999999999994321 2223 5566666 678888
Q ss_pred eeeC
Q psy16019 90 AAVY 93 (121)
Q Consensus 90 ~~v~ 93 (121)
+...
T Consensus 300 afq~ 303 (673)
T KOG4378|consen 300 AFQP 303 (673)
T ss_pred Eeee
Confidence 8663
No 197
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=91.33 E-value=0.88 Score=21.58 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=24.1
Q ss_pred eeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEE
Q psy16019 29 CLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIF 61 (121)
Q Consensus 29 ~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy 61 (121)
+...+. ..+.|.++.+.. +.++.+..||.+.+|
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEc
Confidence 344444 346888988864 488889999999887
No 198
>KOG1332|consensus
Probab=91.26 E-value=1.5 Score=34.47 Aligned_cols=65 Identities=22% Similarity=0.463 Sum_probs=49.1
Q ss_pred CCCeEEEEecCCeEEEEECCcc---cce-eeeeEecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQ---WRR-CLHSIQLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWD 70 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~---~~~-~l~~~~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd 70 (121)
.+.+|--++|||.+.||..... |++ .++. .|+++-.+-. ..|.+-|+..|..+.+|..+.+|.|.
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWE 292 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEE
Confidence 3567888999999999986642 332 2333 5676666554 47889999999999999999999985
No 199
>KOG0288|consensus
Probab=91.24 E-value=0.96 Score=37.59 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=70.8
Q ss_pred EEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeCCCCC
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHH 84 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~ 84 (121)
+--|+.|..|-.|++.. ..|.+++..-+.+.+|....-.++.|=-|++|-.| |..+++. +.+|.
T Consensus 276 vVsgs~DRtiK~WDl~k--~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfw--------D~Rs~~~~~sv~~gg--- 342 (459)
T KOG0288|consen 276 VVSGSADRTIKLWDLQK--AYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFW--------DIRSADKTRSVPLGG--- 342 (459)
T ss_pred eeeccccchhhhhhhhh--hheeccccccccccceEecceeeeecccccceEEE--------eccCCceeeEeecCc---
Confidence 45566666777777665 45777765557888888877677778888887765 6555533 44444
Q ss_pred ceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 85 SVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 85 pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
-|.++... +.+|-.... |.+.+||..+.+|.+.|.+
T Consensus 343 ~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence 78888877 345544444 8999999999999998875
No 200
>KOG4714|consensus
Probab=90.88 E-value=1.4 Score=34.86 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=64.3
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEe---CCEEEEEecCCcEEEEEcCC-----------CCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHV---QGRVVCALADGSVAIFRRGP-----------DGQ 68 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~-----------~g~ 68 (121)
.|..++.||++|.+-+++...-. -....++. .+++-.+.++ +..+|++..||.|.-|.-+. ...
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~ 269 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISS 269 (319)
T ss_pred cccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccc
Confidence 46789999999999999977621 11112222 2456666665 45899999999998875541 113
Q ss_pred CCCCCc-eE-EEeCC----CCCceeEeeeeCCEEEEEeC-CeEEEEe
Q psy16019 69 WDLSKY-HT-VTLGL----PHHSVRSLAAVYNKVWCGYK-NKIHVVD 108 (121)
Q Consensus 69 wd~~~~-~~-i~lg~----~~~pV~~m~~v~~~lw~~~g-n~I~Vi~ 108 (121)
|=-.+| +- |.+.. ...+|.++-+.+.+|-||.. .-|++.+
T Consensus 270 WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 270 WLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 422122 11 32221 24566777777899998877 5677653
No 201
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=90.86 E-value=0.74 Score=24.90 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=25.3
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD 37 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~ 37 (121)
+.|++|+.+|.|+.+++.+ =+.+++++...
T Consensus 1 ~~v~~~~~~g~l~AlD~~T--G~~~W~~~~~~ 30 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKT--GKVLWKFQTGP 30 (38)
T ss_dssp TEEEEETTTSEEEEEETTT--TSEEEEEESSS
T ss_pred CEEEEeCCCCEEEEEECCC--CCEEEeeeCCC
Confidence 4689999999999999988 47788887764
No 202
>KOG0295|consensus
Probab=90.70 E-value=7.7 Score=31.97 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=60.6
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCc-eEEEeCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKY-HTVTLGL 81 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i~lg~ 81 (121)
+.+-.|++|+.|-+|+... -+|+-++. +-.=|-.+.++ +.+++....|++|-|| |+++. +..++..
T Consensus 305 ~~l~s~SrDktIk~wdv~t--g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw--------dl~~~~cmk~~~a 374 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVST--GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVW--------DLKNLQCMKTLEA 374 (406)
T ss_pred cEEEeecccceEEEEeccC--CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEE--------EeccceeeeccCC
Confidence 4677899999999999888 48888885 44678888887 6688888889999998 55443 2334443
Q ss_pred CCCceeEeeeeCCEEEEEeC
Q psy16019 82 PHHSVRSLAAVYNKVWCGYK 101 (121)
Q Consensus 82 ~~~pV~~m~~v~~~lw~~~g 101 (121)
++.=|.|+.+..+..+.-.|
T Consensus 375 h~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred CcceeEEEecCCCCceEEec
Confidence 34556666666555544333
No 203
>KOG0771|consensus
Probab=90.65 E-value=4.4 Score=33.52 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=70.4
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-EEEEEecCCcEEEEEcCCCCCCCCCC----------c
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-RVVCALADGSVAIFRRGPDGQWDLSK----------Y 74 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-~v~v~LanG~l~Vy~r~~~g~wd~~~----------~ 74 (121)
..|=.|..||.+.|++-.+. ...+...++...|-||.+..+ +..|..+--..-||+-+.+-.|--.. -
T Consensus 157 s~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~c 235 (398)
T KOG0771|consen 157 SKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSC 235 (398)
T ss_pred CEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhc
Confidence 46778889999999996663 223444567788999988755 35555544477777766542221111 0
Q ss_pred -----------eE---------E-----EeCC------------CCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcE
Q psy16019 75 -----------HT---------V-----TLGL------------PHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDV 114 (121)
Q Consensus 75 -----------~~---------i-----~lg~------------~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i 114 (121)
.+ + ++-+ -.+.|.||.+.. +-+..|.- +.|.|+++.+++.
T Consensus 236 RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 236 RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR 315 (398)
T ss_pred eecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee
Confidence 00 0 0000 035899999884 55666666 7899999999987
Q ss_pred EEE
Q psy16019 115 IRP 117 (121)
Q Consensus 115 ~~~ 117 (121)
.+-
T Consensus 316 ~~~ 318 (398)
T KOG0771|consen 316 LQY 318 (398)
T ss_pred eEe
Confidence 653
No 204
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=90.62 E-value=5.4 Score=34.30 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=51.7
Q ss_pred EEEECCcc-cce-eeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeee-
Q psy16019 18 FVHSAVSQ-WRR-CLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV- 92 (121)
Q Consensus 18 ~v~~~~~~-~~~-~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v- 92 (121)
.+|....+ .++ .+.++.+|+.|.|-..+ +.++.+|+.||+|.+|+...+- -+..+..- ....++-+
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~------t~~~ka~~---~P~~iaWHp 309 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV------TLLAKAEF---IPTLIAWHP 309 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe------eeeeeecc---cceEEEEcC
Confidence 35555543 121 35677888888887754 6799999999999999543210 11122222 22344443
Q ss_pred -CCEEEEEeC-CeEEEEeCCCCcEEE
Q psy16019 93 -YNKVWCGYK-NKIHVVDPKSLDVIR 116 (121)
Q Consensus 93 -~~~lw~~~g-n~I~Vi~~~tl~i~~ 116 (121)
+.-+-+|+. +.+-+||..-.-+..
T Consensus 310 ~gai~~V~s~qGelQ~FD~ALspi~~ 335 (545)
T PF11768_consen 310 DGAIFVVGSEQGELQCFDMALSPIKM 335 (545)
T ss_pred CCcEEEEEcCCceEEEEEeecCccce
Confidence 234444444 678888876544443
No 205
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.58 E-value=0.89 Score=39.38 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=60.8
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeE-ecC-CCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCc---eEEE
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLK-DSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKY---HTVT 78 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~-~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~---~~i~ 78 (121)
+..||+||....|.-|+..+. .-.+... -+| ++|..|.-. +|.+++|..+|.+-. +.++- ..+.
T Consensus 386 ~g~lWlgs~q~GLsrl~n~n~-~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~---------~pe~~~v~n~ln 455 (671)
T COG3292 386 RGRLWLGSMQNGLSRLDNKNE-WAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKR---------DPESGRVLNLLN 455 (671)
T ss_pred CCcEEEEecccchhhhccCCc-ccccccccCCcccceeeeeecCCCCEEEeccCCeEec---------Cccccchhcccc
Confidence 678999998866776765541 1223333 345 577676654 567999999997544 22232 2345
Q ss_pred eCCCCCceeEeeee----CCEEEEEeCCeEEEEeCCC
Q psy16019 79 LGLPHHSVRSLAAV----YNKVWCGYKNKIHVVDPKS 111 (121)
Q Consensus 79 lg~~~~pV~~m~~v----~~~lw~~~gn~I~Vi~~~t 111 (121)
+++...|+..+... +++||.|+|..|...++..
T Consensus 456 ~~~~~l~~s~~~~lg~~~~g~Lw~a~g~gva~~~sq~ 492 (671)
T COG3292 456 PGSHGLDGSRVEQLGLGPDGRLWLAAGSGVAAWESQR 492 (671)
T ss_pred cccCcCCcchhhhhccCCCCceEEEecceeeeecccc
Confidence 55543444333322 4899999999998777654
No 206
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=90.56 E-value=5.3 Score=29.18 Aligned_cols=93 Identities=11% Similarity=0.151 Sum_probs=59.9
Q ss_pred eEEEEECCcccceeeeeEecC--CCEEEEEEeCC--EEEE--EecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEe
Q psy16019 16 SVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQG--RVVC--ALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSL 89 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~~~--~v~v--~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m 89 (121)
...+|-..+. ......+.+. .+|.++...++ +..| |-.++.+.+| |.+...+.+++. .++.++
T Consensus 38 ~~~l~~~~~~-~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly--------d~~~~~i~~~~~--~~~n~i 106 (194)
T PF08662_consen 38 EFELFYLNEK-NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY--------DVKGKKIFSFGT--QPRNTI 106 (194)
T ss_pred eEEEEEEecC-CCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE--------cCcccEeEeecC--CCceEE
Confidence 3444444331 1345566664 47999998753 3322 3356788888 666566677876 788877
Q ss_pred eee--CCEEEEE-eCC---eEEEEeCCCCcEEEEEE
Q psy16019 90 AAV--YNKVWCG-YKN---KIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 90 ~~v--~~~lw~~-~gn---~I~Vi~~~tl~i~~~~~ 119 (121)
.-. ++.|.+| .|| .+.+.|..+.+...+++
T Consensus 107 ~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~ 142 (194)
T PF08662_consen 107 SWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE 142 (194)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc
Confidence 755 5666554 444 49999999988887765
No 207
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.53 E-value=4.4 Score=33.80 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=39.3
Q ss_pred eeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCCCCCceeEeeee--CCEEEEEeCCeEEE
Q psy16019 30 LHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLPHHSVRSLAAV--YNKVWCGYKNKIHV 106 (121)
Q Consensus 30 l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~~~pV~~m~~v--~~~lw~~~gn~I~V 106 (121)
.+++++|-++..|.. +.++...+++.|.+| |.+..+++ ++.- .||+.+.-. ++.+...+.+.|+|
T Consensus 102 ~k~i~~~~~~~~If~--G~LL~~~~~~~i~~y--------Dw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG--GNLLGVKSSDFICFY--------DWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp T-----SS-EEEEE---SSSEEEEETTEEEEE---------TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred ceEEcCCcccceEEc--CcEEEEECCCCEEEE--------EhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 346777777777777 667777777789998 67777675 5555 568888877 46788888899988
Q ss_pred EeC
Q psy16019 107 VDP 109 (121)
Q Consensus 107 i~~ 109 (121)
++-
T Consensus 170 l~~ 172 (443)
T PF04053_consen 170 LKY 172 (443)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 208
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.48 E-value=2.3 Score=36.96 Aligned_cols=108 Identities=20% Similarity=0.320 Sum_probs=65.1
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecCC-CEEEEEEe-CCEEEEEecCCcE-EEEEcCCCCCCCCCCceEEEe
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-SVLNIVHV-QGRVVCALADGSV-AIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-~V~~i~~~-~~~v~v~LanG~l-~Vy~r~~~g~wd~~~~~~i~l 79 (121)
..|..+|+||..| +++++... ++-.-+-..+|+ .|+.+... .+..++|..||.. ++-+|. .-++..++ .
T Consensus 214 d~qg~LWVGTdqG-v~~~e~~G-~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq---~Lq~~~~~---~ 285 (671)
T COG3292 214 DVQGRLWVGTDQG-VYLQEAEG-WRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQ---GLQIPLSK---M 285 (671)
T ss_pred HhcCcEEEEeccc-eEEEchhh-ccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCC---Cccccccc---c
Confidence 3578899999966 67777655 232233346674 55555543 5689999999975 332221 11222221 2
Q ss_pred CCCCCceeEeeee-CCEEEEEeCCeEEEEeCCCCcEEEEE
Q psy16019 80 GLPHHSVRSLAAV-YNKVWCGYKNKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 80 g~~~~pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~i~~~~ 118 (121)
+.+...|.++... ++.||.+.-++|.=+......++..+
T Consensus 286 ~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~i 325 (671)
T COG3292 286 HLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVI 325 (671)
T ss_pred CCccccccceeeccCCCEeeeccCceEEEecchhhheeee
Confidence 2222455566555 59999999987777766666665544
No 209
>KOG0270|consensus
Probab=90.42 E-value=7.7 Score=32.57 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=66.4
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE---eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH---VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP 82 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~---~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~ 82 (121)
..+..|+-||.+-++++++. ...-...+..+.|-.+.. ..+..|+++-||+|.-|.-.+.| ++...++..+
T Consensus 300 ~~LLsGs~D~~V~l~D~R~~-~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AHd- 373 (463)
T KOG0270|consen 300 SVLLSGSYDGTVALKDCRDP-SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAHD- 373 (463)
T ss_pred eEEEeccccceEEeeeccCc-cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEecc-
Confidence 36788999999999999973 122334455666666664 46789999999999999554433 2335577777
Q ss_pred CCceeEeeeeC---CEEEEEeC-CeEEEEeC
Q psy16019 83 HHSVRSLAAVY---NKVWCGYK-NKIHVVDP 109 (121)
Q Consensus 83 ~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~ 109 (121)
.||.+|.++. +.|--+.. ..|.+.+.
T Consensus 374 -~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 374 -DEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred -CCcceEEecCCCCcceeeccccceEEEEee
Confidence 8999999884 55555555 34555443
No 210
>KOG0292|consensus
Probab=90.36 E-value=7.9 Score=35.52 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=48.6
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC-CEEEEEecCCcEEEEEc
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-GRVVCALADGSVAIFRR 63 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-~~v~v~LanG~l~Vy~r 63 (121)
..|+.+.--+||+.|.||+... |+++++++-. +.--+|..++ -.+|+|.-|+-+.||.-
T Consensus 260 p~q~lIlSnsEDksirVwDm~k--Rt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 260 PHQDLILSNSEDKSIRVWDMTK--RTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred CccceeEecCCCccEEEEeccc--ccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 3577888889999999999998 7889999765 7777777763 36999999999999943
No 211
>KOG2445|consensus
Probab=90.34 E-value=8.1 Score=31.29 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=43.3
Q ss_pred CeEEEEecC-----CeEEEEECCcccceeeeeE---ecCCCEEEEEEeCC------EEEEEecCCcEEEEEcC
Q psy16019 6 PTMWLGSQN-----GSVFVHSAVSQWRRCLHSI---QLKDSVLNIVHVQG------RVVCALADGSVAIFRRG 64 (121)
Q Consensus 6 ~tvwiGt~~-----g~I~v~~~~~~~~~~l~~~---~l~~~V~~i~~~~~------~v~v~LanG~l~Vy~r~ 64 (121)
+.+-+|.++ ++.+||.-.++.+|.++.- .++++|.+|.+.++ .+-||.-|| |-||.-.
T Consensus 185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred ceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence 566778876 5788888777766654433 45589999998754 577888899 9999765
No 212
>KOG2114|consensus
Probab=90.33 E-value=9.9 Score=34.48 Aligned_cols=108 Identities=13% Similarity=0.105 Sum_probs=77.9
Q ss_pred CCCeEEEEecCCeEEEEE---CCcccceeeeeEecC--CCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019 4 VLPTMWLGSQNGSVFVHS---AVSQWRRCLHSIQLK--DSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYH 75 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~---~~~~~~~~l~~~~l~--~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~ 75 (121)
.-.+|-+|=-+|.|+.|. +++ |-....+.++ +|||-+.+..+ .+||+..+ .|..|.-. | .+|.
T Consensus 136 ~l~~Iv~Gf~nG~V~~~~GDi~RD--rgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~-~V~~y~l~--g----r~p~ 206 (933)
T KOG2114|consen 136 DLKTIVCGFTNGLVICYKGDILRD--RGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE-QVMLYSLS--G----RTPS 206 (933)
T ss_pred cccEEEEEecCcEEEEEcCcchhc--cccceeeeccCCCCceeeEEecCCceeEEEEecc-eeEEEEec--C----CCcc
Confidence 456899999999999986 333 2234445555 79999988643 26999988 67888554 1 2244
Q ss_pred EEEeCCCCCceeEeeeeC--CEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019 76 TVTLGLPHHSVRSLAAVY--NKVWCGYKNKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 76 ~i~lg~~~~pV~~m~~v~--~~lw~~~gn~I~Vi~~~tl~i~~~~~~ 120 (121)
...+..-..|+.|-.... .++-||-++.++.+++...++.-.|++
T Consensus 207 ~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~ 253 (933)
T KOG2114|consen 207 LKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEV 253 (933)
T ss_pred eeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecC
Confidence 444555567899988774 558888899999999998887777763
No 213
>KOG0272|consensus
Probab=90.17 E-value=5 Score=33.51 Aligned_cols=111 Identities=22% Similarity=0.156 Sum_probs=76.8
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC----EEEEEecCCcEEEEEcCCCC-----------
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG----RVVCALADGSVAIFRRGPDG----------- 67 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g----------- 67 (121)
...-+-.|+=+|..-||+..+. ..++.+. +.+.|.++.+++. .+-.|.+||++.+|.-..+.
T Consensus 186 ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R 263 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR 263 (459)
T ss_pred CCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh
Confidence 4456777888999999998874 5566664 5578888888754 78889999999999776511
Q ss_pred -----------------------CCCCCCceEE--EeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEE
Q psy16019 68 -----------------------QWDLSKYHTV--TLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 68 -----------------------~wd~~~~~~i--~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~ 117 (121)
.||+.....+ .=|. ..+|-+++.. .+.|.+..| +-=.|-|..|+.-+-.
T Consensus 264 Vs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~ 340 (459)
T KOG0272|consen 264 VSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF 340 (459)
T ss_pred heeeeecCCCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCCCceeeccCccchhheeecccCcEEEE
Confidence 3565554332 2233 3889999888 577888777 3445666666654433
No 214
>KOG0285|consensus
Probab=90.16 E-value=7.1 Score=32.33 Aligned_cols=106 Identities=11% Similarity=0.126 Sum_probs=75.7
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCc-eEE
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKY-HTV 77 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i 77 (121)
+.-.|.|+-+.+|+.|-.|+++. +|.+.... +=++|.|+..+ .+.++.|..|-++-|| |...- .+.
T Consensus 202 S~rHpYlFs~gedk~VKCwDLe~--nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvW--------DiRtr~~V~ 271 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDKQVKCWDLEY--NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW--------DIRTRASVH 271 (460)
T ss_pred cccCceEEEecCCCeeEEEechh--hhhHHHhccccceeEEEeccccceeEEecCCcceEEEe--------eecccceEE
Confidence 45678999999999999999999 56665553 33789999888 6789999999999886 66543 333
Q ss_pred EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019 78 TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 78 ~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~ 117 (121)
.+.--..||.+.... +.++.-|+- ..|..-|...++-...
T Consensus 272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t 314 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT 314 (460)
T ss_pred EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe
Confidence 443223677776554 667776666 4688777776665443
No 215
>KOG1517|consensus
Probab=90.12 E-value=5.7 Score=37.01 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=64.6
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeE--ecCC--CEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCce--
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSI--QLKD--SVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYH-- 75 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~--~l~~--~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~-- 75 (121)
.+.+-.|-.||++-+|+-.-..++++-.. .+.+ +|.-+.... +.++.|..||.|-++ |+..+.
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~--------DlR~~~~e 1292 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL--------DLRMSSKE 1292 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE--------ecccCccc
Confidence 46788999999999999666544433222 2333 255554443 369999999999998 444321
Q ss_pred -EEEeCCC---CCceeEeeeeC--CEEEEEeCCeEEEEeCCC
Q psy16019 76 -TVTLGLP---HHSVRSLAAVY--NKVWCGYKNKIHVVDPKS 111 (121)
Q Consensus 76 -~i~lg~~---~~pV~~m~~v~--~~lw~~~gn~I~Vi~~~t 111 (121)
++++-.+ ...+++|.+++ ..+.+|.+..|.|++...
T Consensus 1293 ~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1293 TFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred ccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence 1222221 12488999986 667777777899987754
No 216
>KOG1063|consensus
Probab=90.12 E-value=3 Score=36.79 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=59.8
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC-CC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP-HH 84 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~-~~ 84 (121)
.|..|..||.+.+|.+.+.--.++.++++. ..+.|+.-....+++..+||++.+|+.+.+. +-=...+.++.. -.
T Consensus 71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e---~~~~~~~rf~~k~~i 147 (764)
T KOG1063|consen 71 EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDE---VFLLAVLRFEIKEAI 147 (764)
T ss_pred eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCc---eeeehheehhhhhHh
Confidence 588899999999999886434467777763 5666776666566666799999998653221 000012333321 01
Q ss_pred ceeEeeee--CCEEEEEeCCeEEEEeC
Q psy16019 85 SVRSLAAV--YNKVWCGYKNKIHVVDP 109 (121)
Q Consensus 85 pV~~m~~v--~~~lw~~~gn~I~Vi~~ 109 (121)
| .|++.. ++..-.+||+..++++.
T Consensus 148 p-LcL~~~~~~~~~lla~Ggs~~~v~~ 173 (764)
T KOG1063|consen 148 P-LCLAALKNNKTFLLACGGSKFVVDL 173 (764)
T ss_pred h-HHHhhhccCCcEEEEecCcceEEEE
Confidence 2 244444 57777788854444443
No 217
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=90.11 E-value=9.9 Score=31.61 Aligned_cols=97 Identities=8% Similarity=0.129 Sum_probs=56.5
Q ss_pred CCCeEEEEecCCeEEEEECCcccce-eeeeE-ecCCCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRR-CLHSI-QLKDSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYHTV- 77 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~-~l~~~-~l~~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i- 77 (121)
....+.+++++|.||.......... .+..+ ++...-.++.+.++ .+|+|...|.=.+|+- ...++.++
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~------~~~~l~~~~ 294 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQI------SLSNLEVLD 294 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEE------ESESEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEE------eCCCcEEEE
Confidence 3567999999999998776553221 23333 21334456666644 8999998877444322 23344444
Q ss_pred EeCCCCCceeEeeeeC------C------EEEEEeC----CeEEEE
Q psy16019 78 TLGLPHHSVRSLAAVY------N------KVWCGYK----NKIHVV 107 (121)
Q Consensus 78 ~lg~~~~pV~~m~~v~------~------~lw~~~g----n~I~Vi 107 (121)
++-. -.||.-|.+.. . +||++|| ..+.++
T Consensus 295 ~~~N-~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~l 339 (504)
T PF10433_consen 295 SLPN-WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRIL 339 (504)
T ss_dssp EE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEE
T ss_pred eccC-cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEE
Confidence 2322 37999998873 2 8999998 357776
No 218
>KOG0650|consensus
Probab=89.89 E-value=0.39 Score=41.67 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=53.5
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC-EEEEEecC-CcEEEEEcCCCCCCCC-CCceEEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG-RVVCALAD-GSVAIFRRGPDGQWDL-SKYHTVT 78 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~-~v~v~Lan-G~l~Vy~r~~~g~wd~-~~~~~i~ 78 (121)
..++.+.+|+.++++..|++.-+ .|.-++++++ ++|.+..++.. -+|+..+| |++.||.-.-.. |+ ++|-++.
T Consensus 617 p~GDnli~gs~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~--Dl~qnpliVP 693 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN--DLLQNPLIVP 693 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh--hhhcCCceEe
Confidence 45678999999999999997764 3566777665 89999998864 36666666 999999765332 33 5665544
Q ss_pred e
Q psy16019 79 L 79 (121)
Q Consensus 79 l 79 (121)
+
T Consensus 694 l 694 (733)
T KOG0650|consen 694 L 694 (733)
T ss_pred e
Confidence 4
No 219
>KOG0288|consensus
Probab=89.74 E-value=9.6 Score=31.86 Aligned_cols=103 Identities=11% Similarity=0.039 Sum_probs=72.2
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEE-eCCC-
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT-LGLP- 82 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~-lg~~- 82 (121)
++--|.-|++|-.|+..+ ..+..++.+.+.|+++-- .+..|.+..-|.++-|+ |+....+.. +..+
T Consensus 314 ~~~SgH~DkkvRfwD~Rs--~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~vi--------DlRt~eI~~~~sA~g 383 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRS--ADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVI--------DLRTKEIRQTFSAEG 383 (459)
T ss_pred eeeecccccceEEEeccC--CceeeEeecCcceeeEeeccCCeEEeeecCCCceeee--------ecccccEEEEeeccc
Confidence 455577789999999887 467788888888877664 46689999999999999 565554431 1110
Q ss_pred ---CCcee--EeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 83 ---HHSVR--SLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 83 ---~~pV~--~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
..-.+ ++.+-+.-+.+|+. ..|||-+..|.++|+.+.
T Consensus 384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec
Confidence 01122 33344566677766 589999999999999864
No 220
>KOG1310|consensus
Probab=89.65 E-value=2.8 Score=36.35 Aligned_cols=105 Identities=17% Similarity=0.264 Sum_probs=70.8
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEe--cCCCEEEEEEe----CCEEEEEecCCcEEEEEcCC--CCCCCCCCc
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ--LKDSVLNIVHV----QGRVVCALADGSVAIFRRGP--DGQWDLSKY 74 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~--l~~~V~~i~~~----~~~v~v~LanG~l~Vy~r~~--~g~wd~~~~ 74 (121)
+.+..+--|++|-+|.||+.-+ +|.+++|. +.+.|||.++. +..|..|-+|-.|-+|.-.. +|.-| ..+
T Consensus 60 ~dG~lL~SGSDD~r~ivWd~~~--~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d-~~~ 136 (758)
T KOG1310|consen 60 ADGELLASGSDDTRLIVWDPFE--YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMD-HGM 136 (758)
T ss_pred CCCCEEeecCCcceEEeecchh--cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccc-cCc
Confidence 3455677799999999999886 78899985 45899999986 34678888899999997652 22222 111
Q ss_pred eE--EEeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCC
Q psy16019 75 HT--VTLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPK 110 (121)
Q Consensus 75 ~~--i~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~ 110 (121)
.. ...+.....|+.|+... +.+|-+.. ..|.=.|..
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 11 12222236777777663 67888776 456655543
No 221
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.52 E-value=7.1 Score=32.44 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=60.9
Q ss_pred CCCCCCeEEEEecCCeEEEEECC--------cccceeeeeEecCC----CEEEEEEe-------------CCEEEEEecC
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAV--------SQWRRCLHSIQLKD----SVLNIVHV-------------QGRVVCALAD 55 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~--------~~~~~~l~~~~l~~----~V~~i~~~-------------~~~v~v~Lan 55 (121)
+++....|-+|-++.-++.-... ++..+..+.-.+.+ .|+++.+. ...|-||+.+
T Consensus 9 ls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ss 88 (415)
T PF14655_consen 9 LSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGTSS 88 (415)
T ss_pred ecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEecc
Confidence 45677788888776555542111 11112223333432 56665542 3469999999
Q ss_pred CcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeC-----------CEEEEEeCCeEEEEeCCCCc
Q psy16019 56 GSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-----------NKVWCGYKNKIHVVDPKSLD 113 (121)
Q Consensus 56 G~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~-----------~~lw~~~gn~I~Vi~~~tl~ 113 (121)
|.|.+|..+..-. -. =.+.+ .||..|-.-. .+|+.-+.+.|.+||..++.
T Consensus 89 G~vrfyte~G~LL---~~---Q~~h~--~pV~~ik~~~~~~~~~~~~~~eel~ily~~~v~~Idg~sL~ 149 (415)
T PF14655_consen 89 GYVRFYTENGVLL---LS---QLLHE--EPVLKIKCRSTKIPRHPGDSSEELSILYPSAVVIIDGFSLF 149 (415)
T ss_pred cEEEEEeccchHH---HH---HhcCc--cceEEEEecccCCCCCCcccccEEEEEECCEEEEEecHHHH
Confidence 9999996542210 00 02222 4444443331 88999999999999987653
No 222
>KOG1240|consensus
Probab=89.37 E-value=4.4 Score=38.06 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=70.6
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecC---CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCce-EEEeC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYH-TVTLG 80 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~-~i~lg 80 (121)
-+-.+|+.++|..|+... ....++++.+ +.|++|... .+-+..|...|.+..| |+.=.- +.+-.
T Consensus 1165 ~lvy~T~~~~iv~~D~r~--~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lW--------DLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRM--RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLW--------DLRFRVPILSWE 1234 (1431)
T ss_pred eEEEEEeccceEEecchh--hhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEE--------EeecCceeeccc
Confidence 678899999999999887 4567777664 799998876 4568888899999997 432111 11222
Q ss_pred CC-CCceeEeeeeC------CEEEEEe-C-CeEEEEeCCCCcEEEEEE
Q psy16019 81 LP-HHSVRSLAAVY------NKVWCGY-K-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 81 ~~-~~pV~~m~~v~------~~lw~~~-g-n~I~Vi~~~tl~i~~~~~ 119 (121)
.| ..|++.|.... -.+-+|. + |-|-+-|++++.-+..|-
T Consensus 1235 ~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence 23 46777766652 2344455 4 678888888887766653
No 223
>KOG0301|consensus
Probab=89.33 E-value=6 Score=34.96 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=57.5
Q ss_pred EEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEE-EeCC-EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCc
Q psy16019 9 WLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIV-HVQG-RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHS 85 (121)
Q Consensus 9 wiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~-~~~~-~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~p 85 (121)
.-..+||.|..|+... .++.++ -++.=|.+|. ..++ -+..+..||++-+|... .--..|++ |..+
T Consensus 194 lScsNDg~Ir~w~~~g---e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-------e~~q~I~l--Ptts 261 (745)
T KOG0301|consen 194 LSCSNDGSIRLWDLDG---EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-------ECVQVITL--PTTS 261 (745)
T ss_pred EeecCCceEEEEeccC---ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-------ceEEEEec--Cccc
Confidence 3345788888888755 555554 4556777777 3334 45555678999998322 12244555 4366
Q ss_pred eeEeeee-CCEEEEEeC-CeEEEEeCC
Q psy16019 86 VRSLAAV-YNKVWCGYK-NKIHVVDPK 110 (121)
Q Consensus 86 V~~m~~v-~~~lw~~~g-n~I~Vi~~~ 110 (121)
|=+.... ++.+.+||+ +.|+|+...
T Consensus 262 iWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 262 IWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEEEeeCCCEEEeccCceEEEEEec
Confidence 6665555 788888888 689998543
No 224
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=89.33 E-value=4.6 Score=33.18 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=49.4
Q ss_pred EEEEEEe--CCEEEEEecCCcEEEEEcCCCCCC---------CCC---------CceEEEeCC-----------------
Q psy16019 39 VLNIVHV--QGRVVCALADGSVAIFRRGPDGQW---------DLS---------KYHTVTLGL----------------- 81 (121)
Q Consensus 39 V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~w---------d~~---------~~~~i~lg~----------------- 81 (121)
|+.+-+. -..+.||+.+|.|+||+......- |.. +-.++.+.+
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 5555554 358999999999999987432111 100 111222221
Q ss_pred -CCCceeEeeeeC-CEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019 82 -PHHSVRSLAAVY-NKVWCGYK-NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 82 -~~~pV~~m~~v~-~~lw~~~g-n~I~Vi~~~tl~i~~~ 117 (121)
-+.||+++...+ +.+.+||. ..+.|||.+.=.+...
T Consensus 84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~ 122 (395)
T PF08596_consen 84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYN 122 (395)
T ss_dssp --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEee
Confidence 137999999986 99999997 6899999988777665
No 225
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=89.20 E-value=0.65 Score=25.24 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=16.7
Q ss_pred CCCeEEEEecCCeEEEEECC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAV 23 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~ 23 (121)
..+.|++|+++|.++.+++.
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 46789999999999999975
No 226
>KOG0639|consensus
Probab=88.96 E-value=0.79 Score=39.26 Aligned_cols=60 Identities=10% Similarity=0.236 Sum_probs=49.3
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcC
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRG 64 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~ 64 (121)
-....+|.|.-|.++.-|++.+ .+.++.-+..+.|+++-|+ ++.|.||.+|+.+-|.+-.
T Consensus 561 ~dGtklWTGGlDntvRcWDlre--grqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLRE--GRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred CCCceeecCCCccceeehhhhh--hhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 3456899999999999999988 4556666677889999997 5579999999999998543
No 227
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.62 E-value=1.1 Score=22.81 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.8
Q ss_pred EEeCCEEEEEecCCcEEEEEcCC
Q psy16019 43 VHVQGRVVCALADGSVAIFRRGP 65 (121)
Q Consensus 43 ~~~~~~v~v~LanG~l~Vy~r~~ 65 (121)
...++.+|++..||.|..++...
T Consensus 3 ~~~~~~v~~~~~~g~l~a~d~~~ 25 (33)
T smart00564 3 VLSDGTVYVGSTDGTLYALDAKT 25 (33)
T ss_pred EEECCEEEEEcCCCEEEEEEccc
Confidence 34566899999999999997754
No 228
>KOG3611|consensus
Probab=88.31 E-value=1.9 Score=38.34 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=38.6
Q ss_pred CCeEEEEecCCeEE-EEECCcc-cc-----eeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEE
Q psy16019 5 LPTMWLGSQNGSVF-VHSAVSQ-WR-----RCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAI 60 (121)
Q Consensus 5 ~~tvwiGt~~g~I~-v~~~~~~-~~-----~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~V 60 (121)
..-|++||++|.|+ +.+.... .+ ++++-++.+.+|..+... .+++|||...|.+-|
T Consensus 425 ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 425 YDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGVVQV 489 (737)
T ss_pred EEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcEEEe
Confidence 34699999999998 4554441 11 234444556788887754 667999999998654
No 229
>KOG2444|consensus
Probab=88.20 E-value=1.3 Score=34.07 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=46.2
Q ss_pred EeCCEEEEEecCCcEEEEEcCCCCCCCCCCce--EEEeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcE
Q psy16019 44 HVQGRVVCALADGSVAIFRRGPDGQWDLSKYH--TVTLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDV 114 (121)
Q Consensus 44 ~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~--~i~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i 114 (121)
--...+++|..+|.+.+|. |.+...+ ....+. .||-||.++. +..|++++ ++|+-.+..-.+.
T Consensus 68 ~~~~~~~vG~~dg~v~~~n------~n~~g~~~d~~~s~~--e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFN------WNLEGAHSDRVCSGE--ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred ccCceEEeecccceEEEec------CCccchHHHhhhccc--ccceeccccccccceeEEeccCCceeeeccccCce
Confidence 3466899999999999994 3333332 245666 8999999995 36899999 6898887765443
No 230
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.16 E-value=1.2 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=20.6
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeee
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHS 32 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~ 32 (121)
.+.+++|+.+|.|+.++..+ -+.+++
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~--G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKT--GEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEccc--CcEEEE
Confidence 35899999999999999876 355554
No 231
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=88.16 E-value=22 Score=32.94 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=39.7
Q ss_pred EEEEe-CCEEEEEec-CCcEEEEEcCCCCCCCCCCceEEEe---CCC------------CCceeEeeee-CCEEEEEeC-
Q psy16019 41 NIVHV-QGRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVTL---GLP------------HHSVRSLAAV-YNKVWCGYK- 101 (121)
Q Consensus 41 ~i~~~-~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i~l---g~~------------~~pV~~m~~v-~~~lw~~~g- 101 (121)
.+.+. ++.+||+.. |+.|.+|+. +...+.++ |.+ ..| ..|++. +++||++..
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~--------~tg~v~tiaG~G~~G~~dG~~~~a~l~~P-~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDP--------ATKRVTTLAGTGKAGFKDGKALKAQLSEP-AGLALGENGRLFVADTN 878 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEEC--------CCCeEEEEeccCCcCCCCCcccccccCCc-eEEEEeCCCCEEEEECC
Confidence 44443 456888765 678888843 22222211 110 123 345554 467999886
Q ss_pred -CeEEEEeCCCCcEE
Q psy16019 102 -NKIHVVDPKSLDVI 115 (121)
Q Consensus 102 -n~I~Vi~~~tl~i~ 115 (121)
|+|.++|.++.+..
T Consensus 879 Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 879 NSLIRYLDLNKGEAA 893 (1057)
T ss_pred CCEEEEEECCCCccc
Confidence 68999999998763
No 232
>KOG1538|consensus
Probab=87.97 E-value=2.4 Score=37.69 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=43.0
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEe-CCEEEEE-ecCCcEEEEEcCCCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHV-QGRVVCA-LADGSVAIFRRGPDG 67 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~-~~~v~v~-LanG~l~Vy~r~~~g 67 (121)
.+..+.++.. .++++|+.++. ..+++++- .|.|.|..|. ++..|++ .||-.+.+|...-+|
T Consensus 23 DGsqL~lAAg-~rlliyD~ndG--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 23 DGTQLILAAG-SRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred CCceEEEecC-CEEEEEeCCCc--ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc
Confidence 3445555554 58999999983 56788864 5999999986 5577775 556677887665555
No 233
>KOG0284|consensus
Probab=87.64 E-value=1.5 Score=36.55 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=64.4
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEe-cC-CCEEEEEEe-CCEEEE-EecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LK-DSVLNIVHV-QGRVVC-ALADGSVAIFRRGPDGQWDLSKYHT-VT 78 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~-~~V~~i~~~-~~~v~v-~LanG~l~Vy~r~~~g~wd~~~~~~-i~ 78 (121)
....|--|..+|.|-+|...- ..++.++ .. .+|.|+.+. .+..|+ +..||+|-|+ |+..++- ..
T Consensus 149 ~g~wmiSgD~gG~iKyWqpnm---nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiW--------df~~~kee~v 217 (464)
T KOG0284|consen 149 NGTWMISGDKGGMIKYWQPNM---NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIW--------DFRMPKEERV 217 (464)
T ss_pred CCCEEEEcCCCceEEecccch---hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEE--------eccCCchhhe
Confidence 344555566777787887665 3455553 33 689998886 334555 4556889886 6655533 23
Q ss_pred eCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEE
Q psy16019 79 LGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIR 116 (121)
Q Consensus 79 lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~ 116 (121)
|.-+..=|+|+.-.. +.|.-|.. |-|.+-|++|++-.-
T Consensus 218 L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 218 LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA 258 (464)
T ss_pred eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh
Confidence 344456788877764 44444555 679999999876543
No 234
>KOG0290|consensus
Probab=87.63 E-value=6.9 Score=31.56 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=57.9
Q ss_pred EEEec--CCeEEEEECCcccc-eee-eeEecCCCEEEEEEeC--CEEEEE-ecCCcEEEEEcCCCCCCCCCCc--eEEEe
Q psy16019 9 WLGSQ--NGSVFVHSAVSQWR-RCL-HSIQLKDSVLNIVHVQ--GRVVCA-LADGSVAIFRRGPDGQWDLSKY--HTVTL 79 (121)
Q Consensus 9 wiGt~--~g~I~v~~~~~~~~-~~l-~~~~l~~~V~~i~~~~--~~v~v~-LanG~l~Vy~r~~~g~wd~~~~--~~i~l 79 (121)
.+||. |-.--||+.+.... ... +-+.+...|++|.+.. -.+||+ .|||++-+| |+.+. .+|--
T Consensus 165 ~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmF--------DLR~leHSTIIY 236 (364)
T KOG0290|consen 165 LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMF--------DLRSLEHSTIIY 236 (364)
T ss_pred eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEE--------EecccccceEEe
Confidence 34443 44556777665311 112 2245567999999987 579987 579999999 44432 34444
Q ss_pred CCC--CCceeEeeeeC-----CEEEEEeCCeEEEEeCCC
Q psy16019 80 GLP--HHSVRSLAAVY-----NKVWCGYKNKIHVVDPKS 111 (121)
Q Consensus 80 g~~--~~pV~~m~~v~-----~~lw~~~gn~I~Vi~~~t 111 (121)
.+| ..|.-.|..+. -...+..+++|.|+|.+.
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 443 46766666653 123445668888888653
No 235
>KOG2079|consensus
Probab=87.16 E-value=1.6 Score=40.21 Aligned_cols=85 Identities=15% Similarity=0.271 Sum_probs=60.0
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCC---ceEEEeCC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSK---YHTVTLGL 81 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~---~~~i~lg~ 81 (121)
.+-+||..|.+..++...+.+.-.+--....+|+|+.+. +..+.+|+++|.|.|+ |... .+.|..+.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~--------D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVW--------DMHRAKILKVITEHG 172 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEE--------EccCCcceeeeeecC
Confidence 467899999999888877644323333455688888876 4589999999999997 5544 35566665
Q ss_pred CCCceeEeeeeC-----CEEEEEeC
Q psy16019 82 PHHSVRSLAAVY-----NKVWCGYK 101 (121)
Q Consensus 82 ~~~pV~~m~~v~-----~~lw~~~g 101 (121)
.|...+..+. ..+.++..
T Consensus 173 --ap~t~vi~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 173 --APVTGVIFVGRTSQNSKLLTSDT 195 (1206)
T ss_pred --CccceEEEEEEeCCCcEEEEccC
Confidence 7888877773 33555555
No 236
>KOG0299|consensus
Probab=86.79 E-value=18 Score=30.56 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=41.3
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-EEEEEecCCcEEEEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-RVVCALADGSVAIFR 62 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-~v~v~LanG~l~Vy~ 62 (121)
+-+..+.+|..|.+..+|...+..+ +--....+++-|.++.++ ....|..||.|+.|.
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~eesq--lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEESQ--LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWS 354 (479)
T ss_pred cccceEEeccccceeEEEeccccce--eeeeCCCCCeeeEEEecccceeeccCCceEEEee
Confidence 3456788999999999999876311 111123469999998755 566677889999984
No 237
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=86.28 E-value=12 Score=30.47 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=59.6
Q ss_pred eEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC-CCceeEeee-e-
Q psy16019 16 SVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP-HHSVRSLAA-V- 92 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~-~~pV~~m~~-v- 92 (121)
++.|.++.. +|.+..+.+|+.++-.=.-+...+.-++||+++-+.-+.+|.-- .+.=++-++ ..|+-.-.. .
T Consensus 119 SVtVVDl~~--~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 119 SVTVVDLAA--KKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA---QKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp EEEEEETTT--TEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE---EEEEEESSTTTS-B-S--EEET
T ss_pred eEEEEECCC--CceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe---EeeccccCCCCcccccccceEC
Confidence 334444444 67788999999876666677888899999999999998887532 111122222 355443322 2
Q ss_pred -CC-EEEEEeCCeEEEEeCCCCc
Q psy16019 93 -YN-KVWCGYKNKIHVVDPKSLD 113 (121)
Q Consensus 93 -~~-~lw~~~gn~I~Vi~~~tl~ 113 (121)
++ -+|.++.++|+-+|...-+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSS
T ss_pred CCCeEEEEecCCEEEEEeccCCc
Confidence 34 4578999999998765544
No 238
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.82 E-value=3.6 Score=36.67 Aligned_cols=53 Identities=9% Similarity=0.156 Sum_probs=40.0
Q ss_pred CCCCCeEEE-EecCCeEEEEECCcccceeeeeEecCCCEEE--EEEe--CCEEEEEecCC
Q psy16019 2 TSVLPTMWL-GSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN--IVHV--QGRVVCALADG 56 (121)
Q Consensus 2 ~~~~~tvwi-Gt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~~--~~~v~v~LanG 56 (121)
.+..+.+.+ ||+||.+..|+..+ =|.+++.++|+.+.. +.|. +++=||+.+-|
T Consensus 688 ~TagglvF~~gt~d~~l~A~D~~t--Gk~lW~~~l~~~~~a~P~tY~~~~GkQYVvi~aG 745 (764)
T TIGR03074 688 ATAGGLVFIGATQDNYLRAYDLST--GKELWKARLPAGGQATPMTYMGKDGKQYVVIVAG 745 (764)
T ss_pred EEcCCEEEEEeCCCCEEEEEECCC--CceeeEeeCCCCcccCCEEEEecCCEEEEEEEeC
Confidence 456788998 89999999999877 488999999975544 4555 66666666554
No 239
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.74 E-value=4.1 Score=30.64 Aligned_cols=60 Identities=8% Similarity=0.149 Sum_probs=41.0
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceee-ee------Ee-------cC-CCEEEEEE-eCCEEEEEecCCcEEEEEcC
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCL-HS------IQ-------LK-DSVLNIVH-VQGRVVCALADGSVAIFRRG 64 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l-~~------~~-------l~-~~V~~i~~-~~~~v~v~LanG~l~Vy~r~ 64 (121)
+.++.+-+=|++|.+||||... +++. .. +. .+ ..|..+.. ..+..+|.++||...+|+.+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~--~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKK--GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCC--CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 3456678889999999999888 3432 21 11 12 34444443 46789999999999988664
No 240
>KOG0300|consensus
Probab=85.66 E-value=16 Score=30.00 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=61.2
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCc----eEE
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKY----HTV 77 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~----~~i 77 (121)
.|..|...+.|-...+|+..+.+ +.+.-|+ +++.|++..+. +++|..|..|-++-|| |+.+. .+|
T Consensus 325 tQrLVvTsSrDtTFRLWDFReaI-~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvW--------dLrNMRsplATI 395 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFREAI-QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVW--------DLRNMRSPLATI 395 (481)
T ss_pred cceEEEEeccCceeEeccchhhc-ceeeeecccccceeEEEEecCCceeecCCCceEEEe--------eeccccCcceee
Confidence 34556666666666677666532 2344444 55899998876 6688888888999996 66655 335
Q ss_pred EeCCCCCceeEeeeeCCE--EEEEeCC-eEEEEeCCCCc
Q psy16019 78 TLGLPHHSVRSLAAVYNK--VWCGYKN-KIHVVDPKSLD 113 (121)
Q Consensus 78 ~lg~~~~pV~~m~~v~~~--lw~~~gn-~I~Vi~~~tl~ 113 (121)
.... |+..+.+..+. +..--.| +|.+||...-.
T Consensus 396 RtdS---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 396 RTDS---PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred ecCC---ccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 5444 77777666332 3333334 57788775543
No 241
>KOG1645|consensus
Probab=85.62 E-value=3.7 Score=34.22 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=58.6
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeE--ecC-CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCC-----CCceE
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSI--QLK-DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDL-----SKYHT 76 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~--~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~-----~~~~~ 76 (121)
.+-++.|-++|.++||++..+.. .+..+ ++. .+|..|.|.... ..-..|.++++....-..|+. ..|++
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~-~~~e~~a~~t~~pv~~i~~~~~n--~~f~~gglLv~~lt~l~f~ei~~s~~~~p~v 324 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEG-PLMELVANVTINPVHKIAPVQPN--KIFTSGGLLVFALTVLQFYEIVFSAECLPCV 324 (463)
T ss_pred cceeEEeccCceEEEEEccCCCc-hHhhhhhhhccCcceeecccCcc--ccccccceEEeeehhhhhhhhhccccCCCcc
Confidence 45789999999999999888532 22222 233 578788887544 555567777776654444533 12344
Q ss_pred EEeCCCCCceeEeeeeC--CEEEEEeCC
Q psy16019 77 VTLGLPHHSVRSLAAVY--NKVWCGYKN 102 (121)
Q Consensus 77 i~lg~~~~pV~~m~~v~--~~lw~~~gn 102 (121)
+.++.| .+..+|...+ +++-+.++.
T Consensus 325 lele~p-G~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 325 LELEPP-GICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred cccCCC-cceeeeeecCccceEEEEecC
Confidence 566653 5655666655 666666663
No 242
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.55 E-value=25 Score=31.10 Aligned_cols=89 Identities=18% Similarity=0.292 Sum_probs=59.3
Q ss_pred eEecCCCEEEEEEe--CCEEEEEecCCcEEEEEc---------CCC----C--C-----CCCC-----------------
Q psy16019 32 SIQLKDSVLNIVHV--QGRVVCALADGSVAIFRR---------GPD----G--Q-----WDLS----------------- 72 (121)
Q Consensus 32 ~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r---------~~~----g--~-----wd~~----------------- 72 (121)
.+++.+.|..|+.. +..+||-+.||.+-+|+. .-. + . -|.+
T Consensus 125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence 45667788888887 678999999999999998 110 0 0 0001
Q ss_pred --CceEEEeCCCCCceeEe---------------eeeCCEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019 73 --KYHTVTLGLPHHSVRSL---------------AAVYNKVWCGYKNKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 73 --~~~~i~lg~~~~pV~~m---------------~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~~~ 120 (121)
.++++.++....|+--+ +...+.||+=..+.|.+++..++++++++++
T Consensus 205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred cEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEe
Confidence 11334453322333222 2234888888888999999999999999876
No 243
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=85.02 E-value=26 Score=30.79 Aligned_cols=92 Identities=13% Similarity=0.212 Sum_probs=53.8
Q ss_pred eEEEEECCcccceeeeeEecCCCEEEEEEe---CCE-EEEEecCCcEEEEEcCC-----CC-CCCCCCceEEEeCCC-CC
Q psy16019 16 SVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGR-VVCALADGSVAIFRRGP-----DG-QWDLSKYHTVTLGLP-HH 84 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~-v~v~LanG~l~Vy~r~~-----~g-~wd~~~~~~i~lg~~-~~ 84 (121)
++.||++.+..-+-..++...+.|.+|-.. +++ +.+-.=...|.+|.... .+ .|- ..+.|.+.+- ++
T Consensus 52 ~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~--~i~~i~i~~~T~h 129 (631)
T PF12234_consen 52 ELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA--PIRKIDISSHTPH 129 (631)
T ss_pred EEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc--eeEEEEeecCCCC
Confidence 566777665322223344445788777754 222 22222334677776532 11 122 2244555542 47
Q ss_pred ceeEeeee-CCEEEEEeCCeEEEEeC
Q psy16019 85 SVRSLAAV-YNKVWCGYKNKIHVVDP 109 (121)
Q Consensus 85 pV~~m~~v-~~~lw~~~gn~I~Vi~~ 109 (121)
||....-. ++.+-+|+||+++|+|-
T Consensus 130 ~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 130 PIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred CccceeEecCCeEEEEeCCEEEEECC
Confidence 88887766 58999999999999965
No 244
>KOG2063|consensus
Probab=84.96 E-value=0.35 Score=43.51 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=58.5
Q ss_pred ecCCCEE-EEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCc----e-E-EEeCCCCCceeEeeeeC--CEEEEEeCCeE
Q psy16019 34 QLKDSVL-NIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY----H-T-VTLGLPHHSVRSLAAVY--NKVWCGYKNKI 104 (121)
Q Consensus 34 ~l~~~V~-~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~----~-~-i~lg~~~~pV~~m~~v~--~~lw~~~gn~I 104 (121)
++|..|. |+...++.||||.-||.|..|.-..++.-...+. . + -.++ .+||+.|.... +-+.+-|.++|
T Consensus 13 ~~~~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~--kk~i~~l~~~~~~~~ll~l~dsqi 90 (877)
T KOG2063|consen 13 RLPLEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFS--KKPINKLLVCASLELLLILSDSQI 90 (877)
T ss_pred hcCCccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhc--cchhHHHhhcchhcchheecCCcc
Confidence 4566677 9999999999999999999998766542111111 1 1 1333 38999998885 77889999999
Q ss_pred EEEeCCCCcE
Q psy16019 105 HVVDPKSLDV 114 (121)
Q Consensus 105 ~Vi~~~tl~i 114 (121)
.+.+..+++-
T Consensus 91 ~~~~l~~~~~ 100 (877)
T KOG2063|consen 91 AVHKLPELEP 100 (877)
T ss_pred eeeecCcccc
Confidence 9998888765
No 245
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=84.70 E-value=2.1 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.1
Q ss_pred CCCCCeEEEEecCCeEEEEECCc
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVS 24 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~ 24 (121)
++..+.+-+||++|.|++|.++-
T Consensus 20 ~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 20 CPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCCCEEEEEECCCeEEEEECCC
Confidence 34567899999999999999843
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=84.67 E-value=13 Score=30.33 Aligned_cols=106 Identities=14% Similarity=0.169 Sum_probs=62.3
Q ss_pred eEEEEec----CCeEEEEECCcccc--eeeeeEecCCCEEEEEEeCCE--EEEEecC---CcEEEEEcCCC-CCCCCCCc
Q psy16019 7 TMWLGSQ----NGSVFVHSAVSQWR--RCLHSIQLKDSVLNIVHVQGR--VVCALAD---GSVAIFRRGPD-GQWDLSKY 74 (121)
Q Consensus 7 tvwiGt~----~g~I~v~~~~~~~~--~~l~~~~l~~~V~~i~~~~~~--v~v~Lan---G~l~Vy~r~~~-g~wd~~~~ 74 (121)
++++||- ++.|++|++..... ..++.+.-++.++=|..++++ +|++-.+ |.++.|+-+.+ |.-.+-+.
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~ 83 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR 83 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec
Confidence 6889984 68999999885322 123344445677777777654 9999887 77999976532 32111111
Q ss_pred eEEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCC-CcEEE
Q psy16019 75 HTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKS-LDVIR 116 (121)
Q Consensus 75 ~~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~t-l~i~~ 116 (121)
.. .-|. .| ..+++. +..|++++= +.|.|+-..+ +.+..
T Consensus 84 ~~-~~g~--~p-~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~ 126 (346)
T COG2706 84 QT-LPGS--PP-CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP 126 (346)
T ss_pred cc-cCCC--CC-eEEEECCCCCEEEEEEccCceEEEEEcccCCcccc
Confidence 11 1222 22 233333 456777654 6788887644 44443
No 247
>KOG1408|consensus
Probab=84.44 E-value=8.7 Score=34.57 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=59.9
Q ss_pred cCCeEEEEECCcccc--eeeeeEecCCCEEEEEEe-------------CCEEEEEecCCcEEEEEcCCCCCCCC------
Q psy16019 13 QNGSVFVHSAVSQWR--RCLHSIQLKDSVLNIVHV-------------QGRVVCALADGSVAIFRRGPDGQWDL------ 71 (121)
Q Consensus 13 ~~g~I~v~~~~~~~~--~~l~~~~l~~~V~~i~~~-------------~~~v~v~LanG~l~Vy~r~~~g~wd~------ 71 (121)
+|.+||||+..+.-| |+.-.+-+.+-|-+++.. ++......+||+|-+|.....-.-++
T Consensus 344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence 689999999998633 222222333444444322 22344566788887765432100000
Q ss_pred -----------CCceE-------------EEeCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 72 -----------SKYHT-------------VTLGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 72 -----------~~~~~-------------i~lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
.+... ...-++.--+||+.+.. ..|..|-+ .++.|.+...++..-.+|
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e 498 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME 498 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee
Confidence 00011 11123457899999884 66777665 689999988776654444
No 248
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.34 E-value=4.3 Score=32.25 Aligned_cols=66 Identities=11% Similarity=0.338 Sum_probs=37.3
Q ss_pred CCCeEEEEecCCeEEEEECCcc---cceeeeeEecCC-CEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQ---WRRCLHSIQLKD-SVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWD 70 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~---~~~~l~~~~l~~-~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd 70 (121)
..+.+|+.++-|.|+.=+..+. |.+...-++... .++++.|. ++.+|++..+|+|.+ +.+.+..|.
T Consensus 196 ~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~ 266 (302)
T PF14870_consen 196 PDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQ 266 (302)
T ss_dssp TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-E
T ss_pred CCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccce
Confidence 3478999999888887762332 222221122223 58999998 579999999997765 444445564
No 249
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=84.31 E-value=14 Score=27.02 Aligned_cols=99 Identities=19% Similarity=0.249 Sum_probs=61.3
Q ss_pred CeEEEEec-CCeEEEEECCcccceeeeeEec-CCCEEEEEEeCCE--EEEE-ecCCcEEEEEcCCCCCCCCCCceEEE--
Q psy16019 6 PTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQGR--VVCA-LADGSVAIFRRGPDGQWDLSKYHTVT-- 78 (121)
Q Consensus 6 ~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~~~--v~v~-LanG~l~Vy~r~~~g~wd~~~~~~i~-- 78 (121)
..+..+.+ ++.+.+|+... .+.+..+.. .+.|.++.+..+. ++++ ..||.+.+| |......+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w--------d~~~~~~~~~~ 237 (466)
T COG2319 168 KLLASGSSLDGTIKLWDLRT--GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW--------DLSTGKLLRST 237 (466)
T ss_pred CEEEecCCCCCceEEEEcCC--CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE--------ECCCCcEEeee
Confidence 35666665 99999999887 455666654 4789999988442 6666 788999987 333222322
Q ss_pred eCCCCCc-eeEeeeeCCEEEEEeC-CeEEEEeCCCCcE
Q psy16019 79 LGLPHHS-VRSLAAVYNKVWCGYK-NKIHVVDPKSLDV 114 (121)
Q Consensus 79 lg~~~~p-V~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i 114 (121)
+...... +.+....+..+..++. +.+.+++..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 238 LSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred cCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 3221112 3344444444444444 6799998887654
No 250
>KOG3621|consensus
Probab=84.26 E-value=1.7 Score=38.25 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=45.6
Q ss_pred CCCeEEEEecCCeEEEEECCccccee---eeeEe--cCCCEEEEEEeCC--EEEEEecCCcEEEEEcCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRC---LHSIQ--LKDSVLNIVHVQG--RVVCALADGSVAIFRRGP 65 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~---l~~~~--l~~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~ 65 (121)
....|-.||++|.|.||..+..-+.. +.... ++..|+|+.+..| ++|.|-.-|+|..-+-+.
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 34457789999999999987742222 23333 3679999999765 899999999988775543
No 251
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=84.12 E-value=21 Score=29.02 Aligned_cols=103 Identities=17% Similarity=0.296 Sum_probs=61.6
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecC-----------C--CEEEEEEeCCEEEEEecCCc----------EEEEE
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-----------D--SVLNIVHVQGRVVCALADGS----------VAIFR 62 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-----------~--~V~~i~~~~~~v~v~LanG~----------l~Vy~ 62 (121)
++.+-=|-+|.+|-.+.....-+......+- . .++.+....+++||-.-.|. |-||
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~- 274 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY- 274 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE-
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE-
Confidence 4555578899999887666433444444431 1 34444445678887544332 2333
Q ss_pred cCCCCCCCCCCceE---EEeCCCCCceeEeeeeC--C-EEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019 63 RGPDGQWDLSKYHT---VTLGLPHHSVRSLAAVY--N-KVWCGYK--NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 63 r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v~--~-~lw~~~g--n~I~Vi~~~tl~i~~~~~ 119 (121)
|++..+. +.+. .|+.+|.+.. + .|++.++ ..++|+|+.|++..++.+
T Consensus 275 -------D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 275 -------DLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp -------ETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred -------ECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 5666555 3443 4888888884 3 5666665 369999999999999875
No 252
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.85 E-value=17 Score=27.69 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=65.1
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCE-EEEEecC----C---cEEEEEcCCCCCCCCC---
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGR-VVCALAD----G---SVAIFRRGPDGQWDLS--- 72 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~-v~v~Lan----G---~l~Vy~r~~~g~wd~~--- 72 (121)
.++-+.+++..++|.+|++.+...+.+.+|..=+.|..|.|...- =.|.|.. . .+-+|- .|...
T Consensus 27 g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~-----NWr~~~~~ 101 (215)
T PF14761_consen 27 GPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF-----NWRSQKEE 101 (215)
T ss_pred CCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEE-----Ehhhhccc
Confidence 347888999999999999985434567777666999999997432 2233322 1 355552 23322
Q ss_pred -Cc-eEEEeCC-------------------C-CCceeEeeee--CCEEEEEeCCeEEEEeCCCCc
Q psy16019 73 -KY-HTVTLGL-------------------P-HHSVRSLAAV--YNKVWCGYKNKIHVVDPKSLD 113 (121)
Q Consensus 73 -~~-~~i~lg~-------------------~-~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl~ 113 (121)
.| +..-+|. | +.|..|++-- .+.|-.||+|++.++......
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT 166 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence 11 1112220 1 3466666644 599999999999998554433
No 253
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=83.58 E-value=12 Score=30.59 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=35.7
Q ss_pred eEEEEECCcccceeeeeEecC-CCEEEEEEeC-CEEEEEecCCcEEEEE
Q psy16019 16 SVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-GRVVCALADGSVAIFR 62 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-~~v~v~LanG~l~Vy~ 62 (121)
.|.||+... +.+.++... +.+.++.+.+ ..+.+=+.||.+.+|+
T Consensus 62 ~I~iys~sG---~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~ 107 (410)
T PF04841_consen 62 SIQIYSSSG---KLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYD 107 (410)
T ss_pred EEEEECCCC---CEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEe
Confidence 599999888 567777766 7888988854 4788888999999994
No 254
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.33 E-value=10 Score=31.51 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=47.3
Q ss_pred CCCCeEEEEecCCeEEEEECCcccce---eeeeEecCCCEEEEEEe------CCEEEEEecCCcEEEEEcC
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRR---CLHSIQLKDSVLNIVHV------QGRVVCALADGSVAIFRRG 64 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~---~l~~~~l~~~V~~i~~~------~~~v~v~LanG~l~Vy~r~ 64 (121)
+..+.+-+|+.+|.|.||.......+ .+-..++.+||++|..- ++.-.|-|---.|+||+-.
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~ 105 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS 105 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Confidence 35679999999999999998664323 45667888999999864 3345566888889999873
No 255
>KOG1963|consensus
Probab=83.28 E-value=20 Score=32.31 Aligned_cols=91 Identities=11% Similarity=0.094 Sum_probs=57.8
Q ss_pred cCCeEEEEECCcccce-eeeeE--ecCCCEEEE--EEeCCEEEEEecCCcEEEEEcCC-CCCCCCCCceEEEeCCCCCce
Q psy16019 13 QNGSVFVHSAVSQWRR-CLHSI--QLKDSVLNI--VHVQGRVVCALADGSVAIFRRGP-DGQWDLSKYHTVTLGLPHHSV 86 (121)
Q Consensus 13 ~~g~I~v~~~~~~~~~-~l~~~--~l~~~V~~i--~~~~~~v~v~LanG~l~Vy~r~~-~g~wd~~~~~~i~lg~~~~pV 86 (121)
-+..+++|......+. +.+.+ ++.-.++|. .+.++.+-+|-.||.|.|++... ++ |-..+++++=.. .+|
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~--~~~t~t~lHWH~--~~V 254 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD--DSETCTLLHWHH--DEV 254 (792)
T ss_pred EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc--ccccceEEEecc--ccc
Confidence 3567888887663221 22212 222224454 45566677777889999998764 22 556677888877 899
Q ss_pred eEeeee--CCEEEEEeCCeEEEE
Q psy16019 87 RSLAAV--YNKVWCGYKNKIHVV 107 (121)
Q Consensus 87 ~~m~~v--~~~lw~~~gn~I~Vi 107 (121)
.|+..+ +..|+-|-.-.|+|.
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred ceeEEecCCceEeecccceEEEE
Confidence 999988 455666655666664
No 256
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=83.24 E-value=4.6 Score=21.66 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=21.8
Q ss_pred CEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 94 NKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 94 ~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
+.+++++. +.|+.+|++|+++.=+++.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 46777766 5899999999999877654
No 257
>KOG3881|consensus
Probab=83.13 E-value=14 Score=30.72 Aligned_cols=99 Identities=9% Similarity=0.130 Sum_probs=63.2
Q ss_pred EecC--CeEEEEECCcccceeeee----------EecCCCEEEEEEeCC---EEEEE-ecCCcEEEEEcCCCCCCCCCCc
Q psy16019 11 GSQN--GSVFVHSAVSQWRRCLHS----------IQLKDSVLNIVHVQG---RVVCA-LADGSVAIFRRGPDGQWDLSKY 74 (121)
Q Consensus 11 Gt~~--g~I~v~~~~~~~~~~l~~----------~~l~~~V~~i~~~~~---~v~v~-LanG~l~Vy~r~~~g~wd~~~~ 74 (121)
|... -.+-||++... +..++ +..|-=+++|.+.++ +.||. .--|.|-+|.-.... .+.
T Consensus 167 GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV 240 (412)
T KOG3881|consen 167 GGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPV 240 (412)
T ss_pred Cchhcccceeeeecccc--eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cce
Confidence 5544 45667776664 22332 233445567777654 55654 556999999332111 111
Q ss_pred eEEEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019 75 HTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 75 ~~i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~ 117 (121)
..+.+.. .||+|+... ++.++.|.. .++..||..+.+....
T Consensus 241 ~~fd~~E--~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 241 AQFDFLE--NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred eEecccc--CcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 2245555 999998877 689999988 7899999999887654
No 258
>KOG1524|consensus
Probab=82.97 E-value=3.1 Score=36.08 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=44.6
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRG 64 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~ 64 (121)
.++..+-++||+++|.+-.. +..+++.-+ ++++|=..+ +--+..+..||.+-+|+|.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs 134 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS 134 (737)
T ss_pred cceEEEEcCCceEEEecccc---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc
Confidence 45888899999999998665 445666444 788887765 4468899999999999886
No 259
>KOG0313|consensus
Probab=82.77 E-value=21 Score=29.59 Aligned_cols=112 Identities=17% Similarity=0.025 Sum_probs=75.2
Q ss_pred eEEEEecCCeEEEEECCcccce--eeeeE-ecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCC---CCCCCCC-----
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRR--CLHSI-QLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPD---GQWDLSK----- 73 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~--~l~~~-~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~---g~wd~~~----- 73 (121)
++..|++|..|.+|..+....+ +++.- -+.++|-|+... ..+++.|..|-+|-+|+...+ ...+..+
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence 5677889999988875543221 22221 345789888854 568889999999999982211 1111111
Q ss_pred ----------ceEEEeCCCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019 74 ----------YHTVTLGLPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 74 ----------~~~i~lg~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~ 118 (121)
-.++.++.-.+||..+.-.+..+.++++ +.|.+-|.+++....++
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~ 297 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL 297 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeee
Confidence 1235555546899998888877777777 78999999998877654
No 260
>KOG0272|consensus
Probab=82.58 E-value=7.2 Score=32.62 Aligned_cols=59 Identities=20% Similarity=0.102 Sum_probs=47.9
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEE
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFR 62 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~ 62 (121)
++.+-.|-.|++|+..-||++.. ++++.+|. +.+-|++.+|.+ ..+..|..|+++-+|.
T Consensus 354 sPNGy~lATgs~Dnt~kVWDLR~--r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 354 SPNGYHLATGSSDNTCKVWDLRM--RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred CCCceEEeecCCCCcEEEeeecc--cccceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence 34555788899999999999998 67788775 447899999974 5788888999999984
No 261
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.50 E-value=20 Score=28.24 Aligned_cols=89 Identities=12% Similarity=0.194 Sum_probs=54.3
Q ss_pred cCCeEEEEECCcc-cceeeeeEecCCCEEEEEEe-CCEEEEEec-------CCcEEEEEcCCCCCCCCCCceEEEeCC--
Q psy16019 13 QNGSVFVHSAVSQ-WRRCLHSIQLKDSVLNIVHV-QGRVVCALA-------DGSVAIFRRGPDGQWDLSKYHTVTLGL-- 81 (121)
Q Consensus 13 ~~g~I~v~~~~~~-~~~~l~~~~l~~~V~~i~~~-~~~v~v~La-------nG~l~Vy~r~~~g~wd~~~~~~i~lg~-- 81 (121)
+...|.+|+.... |...-. .+...|.+|++. +++++||.. ...++.| |+++..--.++.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~--~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~y--------d~~~~~w~~~~~~~ 83 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN--GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATY--------DFKNQTWSSLGGGS 83 (281)
T ss_pred CCCEEEEEECCCCEeecCCC--CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEE--------ecCCCeeeecCCcc
Confidence 4567899996652 333333 277899999986 889999863 3457777 343433322322
Q ss_pred ---CCCceeEeeee---CCEEEEEeC-----CeEEEEeCCC
Q psy16019 82 ---PHHSVRSLAAV---YNKVWCGYK-----NKIHVVDPKS 111 (121)
Q Consensus 82 ---~~~pV~~m~~v---~~~lw~~~g-----n~I~Vi~~~t 111 (121)
-+.||..+.+. .+.+|++-+ ..|.-+|-.+
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 24788888875 477884322 3455555443
No 262
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=82.09 E-value=6.4 Score=22.13 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=19.5
Q ss_pred CEEEEEEeCCEEEEEecCCcEEEE
Q psy16019 38 SVLNIVHVQGRVVCALADGSVAIF 61 (121)
Q Consensus 38 ~V~~i~~~~~~v~v~LanG~l~Vy 61 (121)
...++.-.++++|+|-.++-|.|+
T Consensus 3 ~a~~v~v~g~yaYva~~~~Gl~Iv 26 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGNNGLVIV 26 (42)
T ss_pred eEEEEEEECCEEEEEeCCCCEEEE
Confidence 355778889999999887777787
No 263
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.00 E-value=25 Score=30.94 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=26.2
Q ss_pred EEeCCCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCCc
Q psy16019 77 VTLGLPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSLD 113 (121)
Q Consensus 77 i~lg~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl~ 113 (121)
|.+|..+.-|. +.+-++.++++.+ |.|.|||.++++
T Consensus 317 IPVGKsPHGV~-vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 317 VPVPKNPHGVN-TSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EECCCCccceE-ECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 56665334442 4555788999888 899999999977
No 264
>KOG1897|consensus
Probab=81.95 E-value=24 Score=32.68 Aligned_cols=92 Identities=14% Similarity=0.248 Sum_probs=58.6
Q ss_pred eEEEEec----------CCeEEEEECCc-ccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019 7 TMWLGSQ----------NGSVFVHSAVS-QWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYH 75 (121)
Q Consensus 7 tvwiGt~----------~g~I~v~~~~~-~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~ 75 (121)
.+.+||- .|+|.||...+ +.-+.++..++.++|.++.-.++++.||- |-+|.+|+-.. -+
T Consensus 789 ~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~I-n~~vrLye~t~--------~~ 859 (1096)
T KOG1897|consen 789 YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGI-NQSVRLYEWTT--------ER 859 (1096)
T ss_pred EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEec-CcEEEEEEccc--------cc
Confidence 4566764 79999999887 21234666788899999999998887776 55999995332 23
Q ss_pred EEEeCCC-CCceeEeeee--CCEEEEEeC-CeEEEE
Q psy16019 76 TVTLGLP-HHSVRSLAAV--YNKVWCGYK-NKIHVV 107 (121)
Q Consensus 76 ~i~lg~~-~~pV~~m~~v--~~~lw~~~g-n~I~Vi 107 (121)
.+.+... ..|+..|.+. ++++++|-- .+|.++
T Consensus 860 eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 860 ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 3333221 2454444333 567776665 444444
No 265
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=81.83 E-value=14 Score=33.36 Aligned_cols=97 Identities=13% Similarity=0.212 Sum_probs=67.5
Q ss_pred CeEEEEecCCeEEEEECCcccceeee----eEecCCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLH----SIQLKDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL 79 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~----~~~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l 79 (121)
...++|..+..|+-++..-.-.+.++ .......-.|+... ++++-||..+|.|-.|.|. | ...-..| .+
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~--g---~~AKT~lp~l 617 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL--G---KRAKTALPGL 617 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc--c---hhhhhcCCCC
Confidence 36789999999999997764333332 23223345566543 6799999999999999763 2 1111223 55
Q ss_pred CCCCCceeEeeee--CCEEEEEeCCeEEEEeCC
Q psy16019 80 GLPHHSVRSLAAV--YNKVWCGYKNKIHVVDPK 110 (121)
Q Consensus 80 g~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~ 110 (121)
|+ ||..|.+. |+=|-+.|..-+.+|++.
T Consensus 618 G~---pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 618 GD---PIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred CC---CeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 66 99998887 466778999999999863
No 266
>KOG1445|consensus
Probab=81.21 E-value=8.6 Score=34.18 Aligned_cols=58 Identities=5% Similarity=0.136 Sum_probs=41.5
Q ss_pred eEEEEecCCeEEEEECCcc-----cceeeeeEecC-CCEEEEEEeC---CEEEEEecCCcEEEEEcC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQ-----WRRCLHSIQLK-DSVLNIVHVQ---GRVVCALADGSVAIFRRG 64 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~-----~~~~l~~~~l~-~~V~~i~~~~---~~v~v~LanG~l~Vy~r~ 64 (121)
.+-+|++||.|-+|-...+ .....+.++.. +-|.+|.++. +-+.+|+-|-+|-+|...
T Consensus 642 rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 642 RLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred HeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 4678999999999975543 22344556555 7888898873 567788888888887543
No 267
>KOG2444|consensus
Probab=81.06 E-value=9.9 Score=29.37 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=47.6
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T 78 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~ 78 (121)
...++.+||.+|.|++|+.+..-.. ...+ ..-.+|.|+... ++..+++..||.+--. ...+.+.+ .
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~-~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~--------n~~p~k~~g~ 139 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAH-SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRAC--------NIKPNKVLGY 139 (238)
T ss_pred cCceEEeecccceEEEecCCccchH-HHhhhcccccceeccccccccceeEEeccCCceeee--------ccccCceeee
Confidence 4568999999999999998742111 1111 122355555443 3489999999998764 55555553 2
Q ss_pred eCCCC-CceeEeeee
Q psy16019 79 LGLPH-HSVRSLAAV 92 (121)
Q Consensus 79 lg~~~-~pV~~m~~v 92 (121)
+|... .|+..+.++
T Consensus 140 ~g~h~~~~~e~~ivv 154 (238)
T KOG2444|consen 140 VGQHNFESGEELIVV 154 (238)
T ss_pred eccccCCCcceeEEe
Confidence 22222 455554444
No 268
>KOG0650|consensus
Probab=81.05 E-value=6.9 Score=34.28 Aligned_cols=90 Identities=24% Similarity=0.243 Sum_probs=61.4
Q ss_pred EEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE---EeCC
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV---TLGL 81 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i---~lg~ 81 (121)
|..-..+..++||.+.. ++..--|+. ...|.+.+++. -++|||.++ .|.+| |+....++ .=|.
T Consensus 539 V~~~~~~~~VliHQLSK--~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiY--------dL~kqelvKkL~tg~ 607 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSK--RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIY--------DLSKQELVKKLLTGS 607 (733)
T ss_pred eccCCCcceEEEEeccc--ccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEE--------ehhHHHHHHHHhcCC
Confidence 33334567899999876 333334433 37888988874 589999998 78999 66554332 2233
Q ss_pred CCCceeEeeee--CCEEEEEeC-CeEEEEeCC
Q psy16019 82 PHHSVRSLAAV--YNKVWCGYK-NKIHVVDPK 110 (121)
Q Consensus 82 ~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~ 110 (121)
.=|.+|++. ++.|.+|+- +++..+|+.
T Consensus 608 --kwiS~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 608 --KWISSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred --eeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 567778877 488888766 789888874
No 269
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=80.63 E-value=32 Score=28.65 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=71.4
Q ss_pred CCeEEEEecCCeEEEEECCccc-ceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCC-----C------------
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQW-RRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGP-----D------------ 66 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~-~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~-----~------------ 66 (121)
.+.+++=+-||.|.+|+-+... ...+-.+-+|+|+.-. ..-+..+++.++..|.-|+-.. +
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~-~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~ 223 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYC-PRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDI 223 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEe-ecCCEEEEecCceeEEEecHHHhhhccccccccccccccc
Confidence 4688999999999999977643 2334456678876333 3345788888888999887531 1
Q ss_pred -CCCCCCCceEEEeCCCCCceeEeeeeC-----CEEEEEeCCeEEEEeCCC-CcEEEEEE
Q psy16019 67 -GQWDLSKYHTVTLGLPHHSVRSLAAVY-----NKVWCGYKNKIHVVDPKS-LDVIRPVT 119 (121)
Q Consensus 67 -g~wd~~~~~~i~lg~~~~pV~~m~~v~-----~~lw~~~gn~I~Vi~~~t-l~i~~~~~ 119 (121)
..-.+.+...+.+|+ ++-.|..+. ..+-+=|..++++++... ++.+++|+
T Consensus 224 ~~~k~l~~dWs~nlGE---~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~krLd 280 (418)
T PF14727_consen 224 SSGKKLNPDWSFNLGE---QALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQKRLD 280 (418)
T ss_pred cccccccceeEEECCc---eeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEEEEecC
Confidence 112233335578888 666777664 356666678888887743 33334443
No 270
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=80.39 E-value=18 Score=28.26 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=43.3
Q ss_pred cCCCEEEEEEe---------CCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeCCCCCceeEeee------eCCEE
Q psy16019 35 LKDSVLNIVHV---------QGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAA------VYNKV 96 (121)
Q Consensus 35 l~~~V~~i~~~---------~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~------v~~~l 96 (121)
-++.|+||... -..+.+|..+|.|.|. |.+...+ +.+.. -|+ +|.. ++-++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iL--------d~~af~il~~~~lps--vPv-~i~~~G~~devdyRI 243 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYIL--------DPQAFTILKQVQLPS--VPV-FISVSGQYDEVDYRI 243 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEE--------CchhheeEEEEecCC--Cce-EEEEEeeeeccceEE
Confidence 34688898764 2479999999999999 5555544 45544 555 3333 44678
Q ss_pred EEEeC-CeEEEE
Q psy16019 97 WCGYK-NKIHVV 107 (121)
Q Consensus 97 w~~~g-n~I~Vi 107 (121)
.++|+ ++|+.|
T Consensus 244 ~Va~Rdg~iy~i 255 (257)
T PF14779_consen 244 VVACRDGKIYTI 255 (257)
T ss_pred EEEeCCCEEEEE
Confidence 89999 478876
No 271
>KOG0645|consensus
Probab=80.36 E-value=28 Score=27.79 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=64.9
Q ss_pred eEEEEecCCeEEEEECCcc-cceeeeeE--ecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQ-WRRCLHSI--QLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL 81 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~-~~~~l~~~--~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~ 81 (121)
.+.-+.+|..|.||+..+. .-.|+..+ .+..+|-++.. +..++.+|.=|+++.||... ++.|. - +=+|.-
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efe--c--v~~lEG 103 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFE--C--VATLEG 103 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-CCcee--E--Eeeeec
Confidence 4677888999999998852 11244333 24568888888 57788889999999999765 33232 1 224444
Q ss_pred CCCceeEeeeeC--CEEEEEeC-CeEEEEeCC
Q psy16019 82 PHHSVRSLAAVY--NKVWCGYK-NKIHVVDPK 110 (121)
Q Consensus 82 ~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~ 110 (121)
+..-|+|.+-.. +-|.-+++ ..|.|-...
T Consensus 104 HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 104 HENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 557899988773 44444444 456665443
No 272
>KOG1063|consensus
Probab=79.66 E-value=5.6 Score=35.15 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=43.4
Q ss_pred EEEEecCCeEEEEECCcccceee---eeEecCCCEEEEEEe-------CCEEEEEecCCcEEEEEcC
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCL---HSIQLKDSVLNIVHV-------QGRVVCALADGSVAIFRRG 64 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l---~~~~l~~~V~~i~~~-------~~~v~v~LanG~l~Vy~r~ 64 (121)
.-.++.|..+.||...+..-++. ..+++.++|+.+.+. .+-|-|||..|.|.+|++.
T Consensus 633 FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 45678899999999776422322 445677899998875 2368999999999999987
No 273
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=79.60 E-value=3.4 Score=20.18 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=15.9
Q ss_pred CCCceeEeeee-CCEEEEEeCC
Q psy16019 82 PHHSVRSLAAV-YNKVWCGYKN 102 (121)
Q Consensus 82 ~~~pV~~m~~v-~~~lw~~~gn 102 (121)
|...|+||..- ++.||+|..|
T Consensus 3 ~~n~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 3 PNNNIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp SSSCEEEEEE-TTSCEEEEETS
T ss_pred CCCeEEEEEEcCCcCEEEEeCC
Confidence 34789999888 5999999754
No 274
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=79.23 E-value=16 Score=28.62 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=37.7
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe-CCEEEEEecCCc--EEEEEc
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV-QGRVVCALADGS--VAIFRR 63 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~-~~~v~v~LanG~--l~Vy~r 63 (121)
|..+.+|||+|-..++ ..+.. .....+.-..+|++|... +..+++.+++.+ |.+|+-
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~-~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L 72 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQP-GTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPL 72 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCC-CCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence 3579999998754444 44311 112222223489898875 557999999988 999976
No 275
>KOG1034|consensus
Probab=79.00 E-value=15 Score=30.00 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=72.4
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCce-EEE
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYH-TVT 78 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~-~i~ 78 (121)
..|.+-+|.--|-|.|++..+ .++.+.+. +-.+|-.|+.++ +.|..|..|-+|-++ +.++.. ++-
T Consensus 104 ~~p~la~~G~~GvIrVid~~~--~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw--------nI~~~~Cv~V 173 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVS--GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW--------NIQTDVCVAV 173 (385)
T ss_pred CCeeEEeecceeEEEEEecch--hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEE--------eccCCeEEEE
Confidence 356777788889999999998 67777774 558999999874 468889999888885 676653 455
Q ss_pred eCCC---CCceeEeeeeC-CEEEEEeC--CeEEEEeCCCCcE
Q psy16019 79 LGLP---HHSVRSLAAVY-NKVWCGYK--NKIHVVDPKSLDV 114 (121)
Q Consensus 79 lg~~---~~pV~~m~~v~-~~lw~~~g--n~I~Vi~~~tl~i 114 (121)
+|-. ..-|-++-... +.--++|| .++.+-+..+-+.
T Consensus 174 fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 174 FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHH
Confidence 6643 35666666663 44556777 6788877764443
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=78.91 E-value=21 Score=32.63 Aligned_cols=60 Identities=7% Similarity=0.155 Sum_probs=45.2
Q ss_pred CCCCeEEEEecCCeEEEE----ECCcccceeeeeEecCCCEEEEEEeCC--EEEEEecCCcEEEEEcC
Q psy16019 3 SVLPTMWLGSQNGSVFVH----SAVSQWRRCLHSIQLKDSVLNIVHVQG--RVVCALADGSVAIFRRG 64 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~----~~~~~~~~~l~~~~l~~~V~~i~~~~~--~v~v~LanG~l~Vy~r~ 64 (121)
+...++++++++|.|.++ +..+..-+++. .+.+.|.++.+..+ .+.++..+|+|.++.|.
T Consensus 85 ~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG--~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 85 ADSESLCIALASGDIILVREDPDPDEDEIEIVG--SVDSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred cCCCcEEEEECCceEEEEEccCCCCCceeEEEE--EEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 356789999999999999 54442223334 55678999999855 57777888999999886
No 277
>KOG1445|consensus
Probab=78.48 E-value=6.2 Score=35.02 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=72.0
Q ss_pred cCCeEEEEECCccccee---eeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCC-CCCCCCc-eEEEeCCCCC
Q psy16019 13 QNGSVFVHSAVSQWRRC---LHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDG-QWDLSKY-HTVTLGLPHH 84 (121)
Q Consensus 13 ~~g~I~v~~~~~~~~~~---l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~-~~i~lg~~~~ 84 (121)
.-|.|-||.++++-|-. +-.+.-...|+++.+. +.++-||..||.|.+|+-..+| .-....| +.|+.+. +
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~--e 678 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG--E 678 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc--c
Confidence 35889999999865532 3444455688898865 5689999999999999987655 3344444 5578877 7
Q ss_pred ceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019 85 SVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 85 pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~~~~ 118 (121)
-|.+|-.+. +-|..++- -.|.+-|..+.+..-+|
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l 716 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL 716 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee
Confidence 787777663 55555544 36777777776654443
No 278
>KOG0280|consensus
Probab=78.46 E-value=9.6 Score=30.68 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=45.4
Q ss_pred CeEEEEecCCeEEEEECCcccceeeee-Ee-cCCCEEEEEEeCC---EEEEEecCCcEEEEE
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHS-IQ-LKDSVLNIVHVQG---RVVCALADGSVAIFR 62 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~-~~-l~~~V~~i~~~~~---~v~v~LanG~l~Vy~ 62 (121)
+.|+-|.+||.+.-|+...+ ++++++ .+ +...|.||+..+. .+|.|.=|-.+-++.
T Consensus 179 nlvytGgDD~~l~~~D~R~p-~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIP-KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred ceEEecCCCceEEEEEecCC-cceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 57899999999999998853 456655 34 4579999998866 899999999998874
No 279
>KOG0303|consensus
Probab=77.88 E-value=26 Score=29.39 Aligned_cols=100 Identities=16% Similarity=0.284 Sum_probs=62.7
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL 81 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~ 81 (121)
+.|-+.-..-|-.|.+|++.. .+.+-++++||.|.++.++ ++++..+.-|-.|-|+ |...-+++.-+.
T Consensus 143 A~NVLlsag~Dn~v~iWnv~t--geali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~--------dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGT--GEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVI--------DPRRGTVVSEGV 212 (472)
T ss_pred chhhHhhccCCceEEEEeccC--CceeeecCCCCeEEEEEeccCCceeeeecccceeEEE--------cCCCCcEeeecc
Confidence 344455566678999999887 4667778899999999876 4567777778888887 444444554442
Q ss_pred C---CCceeEeeeeCCEEEE-EeC----CeEEEEeCCCCc
Q psy16019 82 P---HHSVRSLAAVYNKVWC-GYK----NKIHVVDPKSLD 113 (121)
Q Consensus 82 ~---~~pV~~m~~v~~~lw~-~~g----n~I~Vi~~~tl~ 113 (121)
. ..|.|.+-+-++.+.- |.+ -++-+-|+++++
T Consensus 213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred cccCCCcceeEEeccCceeeeccccccccceeccCccccc
Confidence 2 2565655544433221 222 245555665554
No 280
>KOG4328|consensus
Probab=77.82 E-value=34 Score=29.08 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=65.4
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT 78 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~ 78 (121)
...+.+..|++-|...+++.... +.....+.+. .-|..+..+ +..+..|.-|++..||.-.+-+.- .+| ++.
T Consensus 289 ~e~~~vl~~~~~G~f~~iD~R~~-~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K--~sp-~ls 364 (498)
T KOG4328|consen 289 AESRSVLFGDNVGNFNVIDLRTD-GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK--ASP-FLS 364 (498)
T ss_pred CCCccEEEeecccceEEEEeecC-CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC--CCc-cee
Confidence 45567888999998888887763 2234444444 256666654 345666778899999854332211 113 343
Q ss_pred eCCCCCceeEee--eeCCEEEEEeC-CeEEEEeCC
Q psy16019 79 LGLPHHSVRSLA--AVYNKVWCGYK-NKIHVVDPK 110 (121)
Q Consensus 79 lg~~~~pV~~m~--~v~~~lw~~~g-n~I~Vi~~~ 110 (121)
.=+...+|.+-. +.++.|.+.|. |.|.|+|..
T Consensus 365 t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 322246776644 44688999888 899999983
No 281
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=77.81 E-value=14 Score=25.33 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=38.8
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-C-----EEEEEecCCcEEE
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-G-----RVVCALADGSVAI 60 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~-----~v~v~LanG~l~V 60 (121)
+..--|.++|.|=||+-. +.+|+++-...+++|...+ + .+.+|=+||.|-+
T Consensus 54 ~~F~Y~l~NGTVGvY~~~----~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 54 GRFAYALANGTVGVYDRS----QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CEEEEEecCCEEEEEeCc----ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 455678899999999743 4588888777788888663 2 5999999998743
No 282
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=76.97 E-value=36 Score=28.64 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=23.0
Q ss_pred eCCEEEEEe----C--CeEEEEeCCCCcEEEEEEeC
Q psy16019 92 VYNKVWCGY----K--NKIHVVDPKSLDVIRPVTIR 121 (121)
Q Consensus 92 v~~~lw~~~----g--n~I~Vi~~~tl~i~~~~~~~ 121 (121)
-++.++.+- | +-|+.||+.|.+..+-++|.
T Consensus 400 e~G~aYi~Vtt~~g~~~~IY~iDp~TatAtKGl~Ve 435 (435)
T PF14298_consen 400 ENGKAYIPVTTEDGSDPYIYKIDPATATATKGLKVE 435 (435)
T ss_pred eCCEEEEEEeecCCCceeEEEEcCcccccccceEeC
Confidence 357777653 3 67999999999999888763
No 283
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=76.26 E-value=48 Score=28.28 Aligned_cols=97 Identities=9% Similarity=0.111 Sum_probs=55.8
Q ss_pred eEEEEECCcccc-eeeeeEec--CCCEEEEEEeCCEEEEEecCCcEEEEEcC-CCCCCCCCCceEEEeC-----------
Q psy16019 16 SVFVHSAVSQWR-RCLHSIQL--KDSVLNIVHVQGRVVCALADGSVAIFRRG-PDGQWDLSKYHTVTLG----------- 80 (121)
Q Consensus 16 ~I~v~~~~~~~~-~~l~~~~l--~~~V~~i~~~~~~v~v~LanG~l~Vy~r~-~~g~wd~~~~~~i~lg----------- 80 (121)
+|-+|+..+..+ +++.+..+ +.+=....|. -+.|.-...-.+..|+-. ..+.|..+...++.+.
T Consensus 403 KisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~d-hkAfl~~~~~~ll~~Pv~~~~~~~~~~g~~v~~i~~~~g~~~~g~i 481 (521)
T PF09826_consen 403 KISLFDVSDPANPKELDKEVIGDRGSYSEALYD-HKAFLFDKEKNLLAFPVSSSYGYFNFQGAYVFSIDPEDGFTLKGKI 481 (521)
T ss_pred EEEEEecCCCCCccEeEEEEcCCCCccCccccC-ceEEEEeCCCCEEEEEEEEccCccccceEEEEEEeCCCCeEEEEEE
Confidence 577899888643 45666666 2211122222 233444444444444443 2222222233232222
Q ss_pred ---CC----CCceeEeeeeCCEEEEEeCCeEEEEeCCCCc
Q psy16019 81 ---LP----HHSVRSLAAVYNKVWCGYKNKIHVVDPKSLD 113 (121)
Q Consensus 81 ---~~----~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~ 113 (121)
.+ ..+++..+.+++.||.-+.+.|.+.|.+|+|
T Consensus 482 ~h~~~~~~~~~~~~R~lyi~d~lYtvS~~~i~~~~l~t~~ 521 (521)
T PF09826_consen 482 THPSPDYYYSYQIQRSLYIGDTLYTVSDNGIKAYDLNTLE 521 (521)
T ss_pred EccCcccccccceeEEEEECCEEEEEECCEEEEEehHhcC
Confidence 21 1358899999999999999999999999886
No 284
>KOG0313|consensus
Probab=76.04 E-value=45 Score=27.78 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=70.3
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCC-CC--------------
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGP-DG-------------- 67 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~-~g-------------- 67 (121)
...++-++.|..|-+|++.. -++..++..+.+.+||-|.. +.+..|.+|-.+.+|.... +|
T Consensus 271 ~~v~yS~SwDHTIk~WDlet--g~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV 348 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLET--GGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV 348 (423)
T ss_pred CCceEeecccceEEEEEeec--ccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh
Confidence 45677889999999999887 46778888899999999974 5788888898899987643 23
Q ss_pred ---CCCCCCc-eEEEeC-----------CCCCceeEeeeeCCEEEEEeCC-eEEEEeC
Q psy16019 68 ---QWDLSKY-HTVTLG-----------LPHHSVRSLAAVYNKVWCGYKN-KIHVVDP 109 (121)
Q Consensus 68 ---~wd~~~~-~~i~lg-----------~~~~pV~~m~~v~~~lw~~~gn-~I~Vi~~ 109 (121)
.|...+. .+++.+ .+..|+--|.-.++++.+.--| .+.|+..
T Consensus 349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSG 406 (423)
T KOG0313|consen 349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSG 406 (423)
T ss_pred hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEec
Confidence 3444333 333332 1234777777777777666553 4555543
No 285
>KOG4547|consensus
Probab=75.97 E-value=51 Score=28.47 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=68.7
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeE----ecCCCEEEEEEe--------------------CC--EEEEEec
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI----QLKDSVLNIVHV--------------------QG--RVVCALA 54 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~----~l~~~V~~i~~~--------------------~~--~v~v~La 54 (121)
|++++...-.-++||.|.||++..+ +..+.+ ++.++=+|.+.. .+ .+.-|..
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~--~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKN--QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCc--eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 4566777778899999999997763 222222 333444444432 22 3555677
Q ss_pred CCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019 55 DGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 55 nG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~~~ 120 (121)
.|.+..|+-..++. ...+.=+....+|.+++-.. ++++-+.+ .+|..++..+.++.+.+.+
T Consensus 79 ~g~v~~ys~~~g~i-----t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEI-----TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred CccEEEEEecCCeE-----EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc
Confidence 89999996654431 01122233347888866443 44443333 5899999999999887765
No 286
>KOG1920|consensus
Probab=75.41 E-value=50 Score=31.28 Aligned_cols=71 Identities=10% Similarity=0.114 Sum_probs=50.7
Q ss_pred CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeC--CEEEEEeCCeEEEEeCCCC
Q psy16019 37 DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYKNKIHVVDPKSL 112 (121)
Q Consensus 37 ~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~--~~lw~~~gn~I~Vi~~~tl 112 (121)
+-|.++.+. .+.++++++.|.+.+- |.+...+--+|.....|.+|.... .-+....|.+..++.+.++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilv--------d~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILV--------DPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEE--------cccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence 467777775 6799999999999886 333333444555557888988884 4566678877777777777
Q ss_pred cEE
Q psy16019 113 DVI 115 (121)
Q Consensus 113 ~i~ 115 (121)
++.
T Consensus 141 ~~i 143 (1265)
T KOG1920|consen 141 EPI 143 (1265)
T ss_pred cch
Confidence 653
No 287
>KOG0267|consensus
Probab=74.73 E-value=5.8 Score=35.29 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=63.8
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEE--EEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVV--CALADGSVAIFRRGPDGQWDLSKYHTVTLG 80 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~--v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg 80 (121)
....+-.|++|..+-||++.. .+.++.|+ ....|..+..++..+. -|.+|+++-+| |++.+.+|.=+
T Consensus 165 ~Gr~v~~g~ed~tvki~d~~a--gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~--------dletfe~I~s~ 234 (825)
T KOG0267|consen 165 DGRWVASGGEDNTVKIWDLTA--GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFW--------DLETFEVISSG 234 (825)
T ss_pred CCceeeccCCcceeeeecccc--cccccccccccccccccccCchhhhhccCCCCceeeee--------ccceeEEeecc
Confidence 334566788899999999877 56677776 3356666666554433 46677888775 99989888666
Q ss_pred CC-CCceeEeeeeC--CEEEEEeCCeE
Q psy16019 81 LP-HHSVRSLAAVY--NKVWCGYKNKI 104 (121)
Q Consensus 81 ~~-~~pV~~m~~v~--~~lw~~~gn~I 104 (121)
.| ..+|+|..... ..+.+|++-..
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred CCccCCceeeeecCCceeeecCchhhh
Confidence 55 67999999884 56666766433
No 288
>KOG1898|consensus
Probab=74.45 E-value=49 Score=31.04 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=65.0
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeee--eEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLH--SIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~--~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
.-|+.+..|-+ ..+++|++.. |+.+. .++ .|..|..|.....+++||-.--++..|+ |+-++-+++.+
T Consensus 943 ~f~~~~LagvG-~~l~~YdlG~--K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~------y~~~~n~l~~f 1013 (1205)
T KOG1898|consen 943 PFQGRVLAGVG-RFLRLYDLGK--KKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVR------YRREDNQLIVF 1013 (1205)
T ss_pred ccCCEEEEecc-cEEEEeeCCh--HHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEE------EecCCCeEEEE
Confidence 44667777776 5789999887 33222 223 5889999999999999998877765553 33345566666
Q ss_pred CC-C-CCceeEeeee-CCEEEEEeC-CeEEEE
Q psy16019 80 GL-P-HHSVRSLAAV-YNKVWCGYK-NKIHVV 107 (121)
Q Consensus 80 g~-~-~~pV~~m~~v-~~~lw~~~g-n~I~Vi 107 (121)
.+ | +.-|+++..+ .+.+..|-+ .+|.++
T Consensus 1014 adD~~pR~Vt~~~~lD~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1014 ADDPVPRHVTALELLDYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred eCCCccceeeEEEEecCCceeeccccCcEEEE
Confidence 55 2 4445666555 488888877 566665
No 289
>KOG4640|consensus
Probab=73.97 E-value=11 Score=32.96 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=55.8
Q ss_pred EecCCCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCcee-Eeeee--CCEEEEEeCC-eEEE
Q psy16019 33 IQLKDSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVR-SLAAV--YNKVWCGYKN-KIHV 106 (121)
Q Consensus 33 ~~l~~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~-~m~~v--~~~lw~~~gn-~I~V 106 (121)
..+|--+--+.+++. -+-.+.++|.|+++|-+-. ++-++..|..+++ |+.-- |+-|.+|..| +|.+
T Consensus 17 ~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q--------Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 17 MSLPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ--------RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRL 88 (665)
T ss_pred hccccceEEEEEcCccchhheeccCCcEEEEEeccc--------eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEE
Confidence 356666666667654 3455667899999975533 3444655668888 77654 6888999995 8999
Q ss_pred EeCCCCcEEEE
Q psy16019 107 VDPKSLDVIRP 117 (121)
Q Consensus 107 i~~~tl~i~~~ 117 (121)
.|.++.....+
T Consensus 89 ~Dve~~~~l~~ 99 (665)
T KOG4640|consen 89 HDVEKGGRLVS 99 (665)
T ss_pred EEccCCCceec
Confidence 99999888777
No 290
>KOG0277|consensus
Probab=73.68 E-value=44 Score=26.59 Aligned_cols=98 Identities=11% Similarity=0.156 Sum_probs=59.9
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEE---eCCEEEEEecCCcEEEEEcCCCCCCCCCCc-eEEEeCC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVH---VQGRVVCALADGSVAIFRRGPDGQWDLSKY-HTVTLGL 81 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~---~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i~lg~ 81 (121)
....++=||.|-+|+... ++.+.+++= .+-|..-.+ ..|.+--+.+||++-+| |+..+ +.+.+..
T Consensus 119 ~~ltsSWD~TiKLW~~~r--~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lw--------dvr~~gk~~~i~a 188 (311)
T KOG0277|consen 119 IFLTSSWDGTIKLWDPNR--PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLW--------DVRSPGKFMSIEA 188 (311)
T ss_pred eEEeeccCCceEeecCCC--CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEE--------EecCCCceeEEEe
Confidence 345566688888888776 456666643 355555543 35666667889999987 66555 3333433
Q ss_pred CCCceeEeeee--C-CEEEEEeC-CeEEEEeCCCCcE
Q psy16019 82 PHHSVRSLAAV--Y-NKVWCGYK-NKIHVVDPKSLDV 114 (121)
Q Consensus 82 ~~~pV~~m~~v--~-~~lw~~~g-n~I~Vi~~~tl~i 114 (121)
+..-|.|+--. + +-|.-|.- |.|++-|..+++.
T Consensus 189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred ccceeEeecccccCCcEEEecCCCceEEEEehhhccc
Confidence 33566776655 2 33444333 6788888877653
No 291
>KOG2919|consensus
Probab=73.66 E-value=37 Score=27.87 Aligned_cols=112 Identities=15% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCCCCC--eEEEEe-cCCeEEEEECCccccee-eeeEecCC---CEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCC
Q psy16019 1 MTSVLP--TMWLGS-QNGSVFVHSAVSQWRRC-LHSIQLKD---SVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDL 71 (121)
Q Consensus 1 ~~~~~~--tvwiGt-~~g~I~v~~~~~~~~~~-l~~~~l~~---~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~ 71 (121)
|.+.|| .+|..+ ++.-|++|++-+..-++ -+.+...| +-.|+.+. ..++|+|- +-.|-||.-..-|. |.
T Consensus 116 M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr-~c 193 (406)
T KOG2919|consen 116 MKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGR-DC 193 (406)
T ss_pred cccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCC-CC
Confidence 677777 566665 79999999988743332 22333333 33466654 45788775 55999997754443 44
Q ss_pred CCceEEEeCCC--CCceeEeeeeC---CEE-EEEeCCeEEEEeCCCCcE
Q psy16019 72 SKYHTVTLGLP--HHSVRSLAAVY---NKV-WCGYKNKIHVVDPKSLDV 114 (121)
Q Consensus 72 ~~~~~i~lg~~--~~pV~~m~~v~---~~l-w~~~gn~I~Vi~~~tl~i 114 (121)
+.+.++.-|.- ..=|.|++... +.+ |-++++++=+.+-.....
T Consensus 194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p 242 (406)
T KOG2919|consen 194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP 242 (406)
T ss_pred cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc
Confidence 45555433211 12345566553 344 446777777776555443
No 292
>KOG3914|consensus
Probab=73.61 E-value=24 Score=29.20 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=60.5
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEec--CCCEEEEEEeCCEE-EEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KDSVLNIVHVQGRV-VCALADGSVAIFRRGPDGQWDLSKYHTVTLG 80 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~~V~~i~~~~~~v-~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg 80 (121)
.+..+...-.|+.|.|-..... -...++-+ .+=|-.|...+++. ..|.+|++|-+|+-.++.. ++++.+.
T Consensus 162 D~~~IitaDRDEkIRvs~ypa~--f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~-----L~t~dl~ 234 (390)
T KOG3914|consen 162 DDQFIITADRDEKIRVSRYPAT--FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKL-----LDTCDLS 234 (390)
T ss_pred CCCEEEEecCCceEEEEecCcc--cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCc-----ccccchh
Confidence 3344555555666665443331 22333333 34565666666654 8999999999985544332 2333333
Q ss_pred CCCCceeEeeee------------CCEEEEEeCC-eEEEEeCCCCcEEE
Q psy16019 81 LPHHSVRSLAAV------------YNKVWCGYKN-KIHVVDPKSLDVIR 116 (121)
Q Consensus 81 ~~~~pV~~m~~v------------~~~lw~~~gn-~I~Vi~~~tl~i~~ 116 (121)
....||+.+++- ...+|+-|++ -|+++..++++-..
T Consensus 235 s~~~~i~~lap~~f~~~~i~i~e~~~~~~~~~~~~p~~if~~~a~~~~~ 283 (390)
T KOG3914|consen 235 SLVIPILPLAPPKFIPTIIAIFESSRLVWLLCDGTPVVIFGAEALPTSL 283 (390)
T ss_pred HhhhhccccCchhhhhhHHHHHHhhhhhheecCCCeEEEEeecCCCcee
Confidence 334455544432 2778887874 38999888876543
No 293
>PRK13684 Ycf48-like protein; Provisional
Probab=73.39 E-value=16 Score=28.98 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=39.3
Q ss_pred CCeEEEEecCCeEEEEECC--cccceeeeeEecCCCEEEEEEe-CCEEEEEecCCcEEEEEc
Q psy16019 5 LPTMWLGSQNGSVFVHSAV--SQWRRCLHSIQLKDSVLNIVHV-QGRVVCALADGSVAIFRR 63 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~--~~~~~~l~~~~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r 63 (121)
.+.+|+..++|.|+. +.. ..|+.....-.+|.....+.+. +++.|+...+|.|+.|+-
T Consensus 270 ~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 270 PGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 457999999998774 333 2344321112355667777755 788999999999999854
No 294
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=73.06 E-value=35 Score=27.75 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=45.7
Q ss_pred eeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeCCEEEEEe-CCeEEEEe
Q psy16019 30 LHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGY-KNKIHVVD 108 (121)
Q Consensus 30 l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~~~lw~~~-gn~I~Vi~ 108 (121)
+..+.+++.+.+++..++++|+|-.+.-|.|+.-. +.++|..+..=+-..=-++..+.++..|++. -+...++|
T Consensus 80 ~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS-----~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivd 154 (370)
T COG5276 80 LSVINARDLFADVRVSEEYVYVADWSSGLRIVDIS-----TPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVD 154 (370)
T ss_pred EEEEehhhhhheeEecccEEEEEcCCCceEEEecc-----CCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEE
Confidence 45568889999999999999999988788888432 1122233211110011244555566666666 34555555
Q ss_pred CC
Q psy16019 109 PK 110 (121)
Q Consensus 109 ~~ 110 (121)
..
T Consensus 155 vs 156 (370)
T COG5276 155 VS 156 (370)
T ss_pred CC
Confidence 43
No 295
>KOG0322|consensus
Probab=72.56 E-value=4.8 Score=32.01 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=42.5
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-EEEEEecCCcEEEE
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-RVVCALADGSVAIF 61 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-~v~v~LanG~l~Vy 61 (121)
++..+.-|++.|.+++|.+..+-..++..+.....|+.+++..+ ++..=.-|+.|..|
T Consensus 24 a~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 24 ANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILW 82 (323)
T ss_pred cchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEE
Confidence 34568889999999999998854445666566788999999874 44444556666665
No 296
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=72.22 E-value=13 Score=29.43 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCeEEEEecCC--eEEEEECCcccceeeeeEecC-CCEEEEEEeC---CEEEEEecCCcE
Q psy16019 5 LPTMWLGSQNG--SVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ---GRVVCALADGSV 58 (121)
Q Consensus 5 ~~tvwiGt~~g--~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~---~~v~v~LanG~l 58 (121)
.+.+|+....+ .|.+|+... +.+..+++| ..++|..+-. +.+||..+.-..
T Consensus 223 dG~lw~~a~~~g~~v~~~~pdG---~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPDG---KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred CCCEEEecccCCceEEEECCCC---cEEEEEECCCCCCccceEeCCCcCEEEEEecCCCC
Confidence 46899655554 999999774 678899999 7888888876 789988887543
No 297
>KOG1912|consensus
Probab=72.11 E-value=5.7 Score=35.89 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=34.4
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeCCEEEEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQGRVVCA 52 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~~~v~v~ 52 (121)
..+|.+-+||++|.|.||+...+ ..-+++.. +..|-+|.+.++.=||.
T Consensus 435 ~~~pLvAvGT~sGTV~vvdvst~--~v~~~fsvht~~VkgleW~g~sslvS 483 (1062)
T KOG1912|consen 435 GTVPLVAVGTNSGTVDVVDVSTN--AVAASFSVHTSLVKGLEWLGNSSLVS 483 (1062)
T ss_pred eeeeeEEeecCCceEEEEEecch--hhhhhhcccccceeeeeeccceeEEE
Confidence 45788999999999999998873 44445543 46777877765554444
No 298
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=71.83 E-value=11 Score=19.34 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.7
Q ss_pred CEEEEEEeCCEEEEEecCCcEEEE
Q psy16019 38 SVLNIVHVQGRVVCALADGSVAIF 61 (121)
Q Consensus 38 ~V~~i~~~~~~v~v~LanG~l~Vy 61 (121)
.|.+|..-++.|.|+.+.+.|-+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 478888999999999999999988
No 299
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.59 E-value=53 Score=26.62 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=35.2
Q ss_pred CeEEEEECCcccceeeee--EecC----CCEEEEEEe--CCEEEEEecCCc--EEEEEcC
Q psy16019 15 GSVFVHSAVSQWRRCLHS--IQLK----DSVLNIVHV--QGRVVCALADGS--VAIFRRG 64 (121)
Q Consensus 15 g~I~v~~~~~~~~~~l~~--~~l~----~~V~~i~~~--~~~v~v~LanG~--l~Vy~r~ 64 (121)
..||.|+..+..-+-+|. +..+ .-|.+|.|. +++++.|=+||. |-||+-.
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ld 137 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLD 137 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEc
Confidence 367778866643334554 3333 389999996 689999999997 7788654
No 300
>PHA02713 hypothetical protein; Provisional
Probab=71.55 E-value=45 Score=28.42 Aligned_cols=24 Identities=4% Similarity=0.127 Sum_probs=17.9
Q ss_pred EeeeeCCEEEEEeC--------CeEEEEeCCC
Q psy16019 88 SLAAVYNKVWCGYK--------NKIHVVDPKS 111 (121)
Q Consensus 88 ~m~~v~~~lw~~~g--------n~I~Vi~~~t 111 (121)
+++..+++||+-.| +.|..+|+++
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 56777899988655 2467899887
No 301
>KOG0280|consensus
Probab=71.31 E-value=53 Score=26.54 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=55.1
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCC-CEEEEEE---eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE--
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-SVLNIVH---VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-- 77 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-~V~~i~~---~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-- 77 (121)
....+.++..+|.+.+.+-.+.--+..++.+-.+ ..=--++ +.|-||-|..||.|.-| |+..|+..
T Consensus 132 ~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~--------D~R~p~~~i~ 203 (339)
T KOG0280|consen 132 SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCW--------DIRIPKTFIW 203 (339)
T ss_pred cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEE--------EecCCcceee
Confidence 3445788888888885443332112223333222 1000111 35789999999999887 55544332
Q ss_pred ---EeCCCCCceeEeeee---CCEEEEE-eCCeEEEEeCCCC
Q psy16019 78 ---TLGLPHHSVRSLAAV---YNKVWCG-YKNKIHVVDPKSL 112 (121)
Q Consensus 78 ---~lg~~~~pV~~m~~v---~~~lw~~-~gn~I~Vi~~~tl 112 (121)
++.+ .-|.||.-. +-.++.| |...|.++|.++.
T Consensus 204 ~n~kvH~--~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 204 HNSKVHT--SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred ecceeee--cceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 2222 444454444 2355554 4479999998863
No 302
>PHA03098 kelch-like protein; Provisional
Probab=70.89 E-value=60 Score=26.98 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=46.9
Q ss_pred eEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCC------cEEEEEcCCCCCCCCCCceEEEeCCCCCceeEe
Q psy16019 16 SVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADG------SVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSL 89 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG------~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m 89 (121)
.++.|+.....=..+..+..|-.-.+....++++|+-.+.+ ++-.|+.. .+.|..-.+ +..|.. -.+.
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~----lp~~r~-~~~~ 385 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPG-ESKWREEPP----LIFPRY-NPCV 385 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCC-CCceeeCCC----cCcCCc-cceE
Confidence 46677765521112222222322234556688888866642 35566433 345653221 111111 1234
Q ss_pred eeeCCEEEEEeC--------CeEEEEeCCCCcE
Q psy16019 90 AAVYNKVWCGYK--------NKIHVVDPKSLDV 114 (121)
Q Consensus 90 ~~v~~~lw~~~g--------n~I~Vi~~~tl~i 114 (121)
+..++++|+--| +.+..+|+.+.+-
T Consensus 386 ~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 386 VNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred EEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 556788888544 4688888877543
No 303
>KOG4499|consensus
Probab=70.69 E-value=45 Score=26.36 Aligned_cols=80 Identities=15% Similarity=0.289 Sum_probs=50.8
Q ss_pred EEEEeCCEEEEEecCCcEEEEEcCC---CC-CCCCCCceEE-------Ee---------CC---C--------CCceeE-
Q psy16019 41 NIVHVQGRVVCALADGSVAIFRRGP---DG-QWDLSKYHTV-------TL---------GL---P--------HHSVRS- 88 (121)
Q Consensus 41 ~i~~~~~~v~v~LanG~l~Vy~r~~---~g-~wd~~~~~~i-------~l---------g~---~--------~~pV~~- 88 (121)
.+....+.+|+=+++|.+-++...- .| -||.+.-++- ++ |+ + .+|--.
T Consensus 133 ~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~ 212 (310)
T KOG4499|consen 133 DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL 212 (310)
T ss_pred cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC
Confidence 4556677899999999988876642 22 4875544331 11 10 0 012122
Q ss_pred ----eeee-CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019 89 ----LAAV-YNKVWCGYK--NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 89 ----m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~ 120 (121)
|++- ++.||+++- .+|+-+|+.|+++...|..
T Consensus 213 ~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl 251 (310)
T KOG4499|consen 213 EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL 251 (310)
T ss_pred CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc
Confidence 2222 588999986 4899999999999988753
No 304
>KOG4227|consensus
Probab=70.64 E-value=48 Score=28.02 Aligned_cols=97 Identities=8% Similarity=0.069 Sum_probs=60.7
Q ss_pred EEEEecCCeEEEEECCcccc----eeeeeEe--cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019 8 MWLGSQNGSVFVHSAVSQWR----RCLHSIQ--LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL 79 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~----~~l~~~~--l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l 79 (121)
+--|.+|-...+|+..+... |.++-.. +.+.|+|+.+. ..+||.|--+|+|+.. |+++...|-+
T Consensus 71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H--------DiEt~qsi~V 142 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH--------DIETKQSIYV 142 (609)
T ss_pred EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee--------ecccceeeee
Confidence 44566788999999777532 3333332 23799999987 3479999999999887 6666666544
Q ss_pred CCC---CCceeEeeee--CCEEEEEeC-CeEEEEeCCCC
Q psy16019 80 GLP---HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSL 112 (121)
Q Consensus 80 g~~---~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl 112 (121)
..- ..-|--|... .+.+..... ..|.++|...-
T Consensus 143 ~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 143 ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred ecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 321 1234444433 455555555 56777765543
No 305
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=70.62 E-value=13 Score=30.83 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=39.5
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-----------CEEEEEecCCcEEEEE
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-----------GRVVCALADGSVAIFR 62 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-----------~~v~v~LanG~l~Vy~ 62 (121)
..+-+|+.+|.+.+|+-.. ..-+.+.-++++|+.|+... +.+++--. +.+++++
T Consensus 80 ~~I~VG~ssG~vrfyte~G--~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Id 144 (415)
T PF14655_consen 80 TCIAVGTSSGYVRFYTENG--VLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIID 144 (415)
T ss_pred EEEEEEecccEEEEEeccc--hHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEe
Confidence 4788999999999999766 23333444578999999753 56777666 6777776
No 306
>KOG1275|consensus
Probab=70.24 E-value=57 Score=30.25 Aligned_cols=97 Identities=16% Similarity=0.258 Sum_probs=61.8
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCC-CEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCCCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-SVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLPH 83 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~~ 83 (121)
.++|=|-|+ .|..|+.+. -+..+...+.+ .|+-|++++...|.|-.+|+|.+= |.++.+++ ++..-.
T Consensus 149 ~~i~Gg~Q~-~li~~Dl~~--~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~Lr--------D~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 149 TLIMGGLQE-KLIHIDLNT--EKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLR--------DPNSFETIHTFDAHS 217 (1118)
T ss_pred ceeecchhh-heeeeeccc--ceeeeeeeccCCceEEEEecCcEEEeecccceEEee--------cCCcCceeeeeeccc
Confidence 455555664 455566664 12223334443 599999999999999999999886 66666554 333334
Q ss_pred CceeEeeeeCCEE-EEEeCCe---------EEEEeCCCCc
Q psy16019 84 HSVRSLAAVYNKV-WCGYKNK---------IHVVDPKSLD 113 (121)
Q Consensus 84 ~pV~~m~~v~~~l-w~~~gn~---------I~Vi~~~tl~ 113 (121)
..|.-|.+.++.| -||++.+ |.|.|.+.+.
T Consensus 218 ~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 218 GSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred cceeeeeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 7888888887765 5666532 4555555543
No 307
>KOG1409|consensus
Probab=69.65 E-value=19 Score=29.58 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=45.7
Q ss_pred CCCCeEEEEecCCeEEEEECCc---ccceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCC
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVS---QWRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGP 65 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~---~~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~ 65 (121)
+..++||-.++|-.+-||--.+ .|+...+ .+|.++.++.|.. .++|+|+-||++.-|.-..
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~se 99 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSE 99 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeeccceEEEEEEecceEEEEEhhh
Confidence 4567899999999999885333 2332222 5788888888874 4899999999999997764
No 308
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.54 E-value=45 Score=24.98 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=30.0
Q ss_pred eeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEc
Q psy16019 29 CLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRR 63 (121)
Q Consensus 29 ~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r 63 (121)
.+-.+.++.++..+...++++.|-.++|.+.||+-
T Consensus 5 l~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl 39 (219)
T PF07569_consen 5 LLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNL 39 (219)
T ss_pred ccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 34567888888889999999999999999999743
No 309
>KOG2066|consensus
Probab=69.15 E-value=24 Score=31.89 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=36.7
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRG 64 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~ 64 (121)
..+-+||-+|.++++....+. .+.....+. -..+.++-.+.-||++.|....
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~---~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNP----KTNFDHSSS---ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred ceeeeccccceEEEEecCCcc----ccccccccc---ccCCceEEEecCCCcEEEeecc
Confidence 357789999999999988853 222223222 4456678888889999998543
No 310
>KOG2919|consensus
Probab=68.86 E-value=44 Score=27.48 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=56.1
Q ss_pred CCCCCeEEEEecCCeEEEEECCccc--ce--------eeeeEecC--CCEEEEEEe--------CCEEEEE-ecCCcEEE
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQW--RR--------CLHSIQLK--DSVLNIVHV--------QGRVVCA-LADGSVAI 60 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~--~~--------~l~~~~l~--~~V~~i~~~--------~~~v~v~-LanG~l~V 60 (121)
+....++..-++|.++.+|++.... ++ ..-+++.+ +.|.+-... +..+|++ ..+--|-+
T Consensus 58 SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~ 137 (406)
T KOG2919|consen 58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHL 137 (406)
T ss_pred CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceee
Confidence 4567788899999999999866531 11 12233444 445443332 1122222 22233333
Q ss_pred EEcCCCCCCCCCCceEEEeCCCCCceeEeeee--CCEEEEEeCCeEEEEeC-CCC
Q psy16019 61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYKNKIHVVDP-KSL 112 (121)
Q Consensus 61 y~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~-~tl 112 (121)
+.--.+. --.+++...--+--....|+... +..|+||+.+.|+|||. ..+
T Consensus 138 wdaftG~--lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpG 190 (406)
T KOG2919|consen 138 WDAFTGK--LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPG 190 (406)
T ss_pred eeccccc--cccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCC
Confidence 3221111 00122222111111334466655 68999999999999998 444
No 311
>KOG2139|consensus
Probab=68.69 E-value=68 Score=26.74 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=62.3
Q ss_pred EEEEecCCeEEEEECCcccceeeeeEecC--CCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCC-----CCceEE
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDL-----SKYHTV 77 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~-----~~~~~i 77 (121)
+-+|++|-.|.||+-.+ ++-..++.+ ..|+|+.+... .+-||..- -|++|.....+.=.. .+.+.=
T Consensus 113 fava~nddvVriy~kss---t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~q 188 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS---TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQ 188 (445)
T ss_pred hhhhccCcEEEEeccCC---CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchh
Confidence 34688899999999877 444444433 58999998642 45555554 477776543321000 011111
Q ss_pred EeCCC-CCceeEeeeeC-CEEEEE--eC-CeEEEEeCCCCcE
Q psy16019 78 TLGLP-HHSVRSLAAVY-NKVWCG--YK-NKIHVVDPKSLDV 114 (121)
Q Consensus 78 ~lg~~-~~pV~~m~~v~-~~lw~~--~g-n~I~Vi~~~tl~i 114 (121)
-+.+| +.||++|.-.+ +..|.. .| ..|.|-|+.+.+-
T Consensus 189 vl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 189 VLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred heeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc
Confidence 12223 58999999885 555654 44 4799999988754
No 312
>KOG2079|consensus
Probab=68.61 E-value=14 Score=34.37 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=56.8
Q ss_pred cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCC
Q psy16019 35 LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKS 111 (121)
Q Consensus 35 l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~t 111 (121)
.++.|....+...-+-+|.+-|.++.+.- .|++.. ...=...+.||+|++.. +..+.+|.+ +-|+|+|..+
T Consensus 88 ~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~----~~nL~~--~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 88 IAAGVISSAIVVVPIVIGTSHGHVLLSDM----TGNLGP--LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred CCcceeeeeeeeeeEEEEcCchhhhhhhh----hcccch--hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 34677788888888888999999988732 233332 11112236799999988 477888988 5799999999
Q ss_pred CcEEEEEE
Q psy16019 112 LDVIRPVT 119 (121)
Q Consensus 112 l~i~~~~~ 119 (121)
.++.+.|.
T Consensus 162 ~k~l~~i~ 169 (1206)
T KOG2079|consen 162 AKILKVIT 169 (1206)
T ss_pred Ccceeeee
Confidence 88887653
No 313
>KOG0300|consensus
Probab=68.54 E-value=14 Score=30.34 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=42.6
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCE--EEEEecCCcEEEEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGR--VVCALADGSVAIFR 62 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~--v~v~LanG~l~Vy~ 62 (121)
+.||.+=.++-|..-.||+.++ -+|+.++. +.++|-||++++.. +..|.+|++--||+
T Consensus 158 ~tqpi~gtASADhTA~iWs~Es--g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 158 STQPICGTASADHTARIWSLES--GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred cCCcceeecccccceeEEeecc--ccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 4566444455688889999988 58998885 55899999998654 55566666766765
No 314
>KOG0293|consensus
Probab=67.53 E-value=30 Score=29.25 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=62.0
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecCCCEEE--EEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN--IVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHH 84 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~ 84 (121)
.+-.|+.|+.|+-+++..+...+=.-.+.| .|.| |.+.+..|+....|-.+.+|+|...- +-.+++. .+
T Consensus 326 ~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~-~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~-----dr~lise---~~ 396 (519)
T KOG0293|consen 326 RFVTGSPDRTIIMWDLDGNILGNWEGVRDP-KVHDLAITYDGKYVLLVTVDKKIRLYNREARV-----DRGLISE---EQ 396 (519)
T ss_pred eeEecCCCCcEEEecCCcchhhcccccccc-eeEEEEEcCCCcEEEEEecccceeeechhhhh-----hhccccc---cC
Confidence 456899999999999998755443333434 2334 44677899999999999999775321 1112222 36
Q ss_pred ceeEeeeeC-CEEEEE-eC-CeEEEEeCCCCcE
Q psy16019 85 SVRSLAAVY-NKVWCG-YK-NKIHVVDPKSLDV 114 (121)
Q Consensus 85 pV~~m~~v~-~~lw~~-~g-n~I~Vi~~~tl~i 114 (121)
||+++.+.+ +++..- -. +.|+.-|.+..++
T Consensus 397 ~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l 429 (519)
T KOG0293|consen 397 PITSFSISKDGKLALVNLQDQEIHLWDLEENKL 429 (519)
T ss_pred ceeEEEEcCCCcEEEEEcccCeeEEeecchhhH
Confidence 888888875 444332 22 3566665554333
No 315
>PRK01742 tolB translocation protein TolB; Provisional
Probab=67.49 E-value=66 Score=26.12 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=55.1
Q ss_pred CCCeEEEE-ecCCe--EEEEECCcccceeeeeE-ecCCCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCceE
Q psy16019 4 VLPTMWLG-SQNGS--VFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYHT 76 (121)
Q Consensus 4 ~~~tvwiG-t~~g~--I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~~ 76 (121)
....+..+ ..+|. ||+++.... + ...+ ..+..+.+..+..+ .+|++..+|..-||.-+.++. ....
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~--~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~----~~~~ 330 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGG--T-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG----GASL 330 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCC--C-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CeEE
Confidence 34455554 45664 556666542 2 2222 22334555555433 355655678888876543321 1222
Q ss_pred EEeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEE
Q psy16019 77 VTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVI 115 (121)
Q Consensus 77 i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~ 115 (121)
+ +..... -...+.++.|.++.++.++++|..+++.+
T Consensus 331 l--~~~~~~-~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 331 V--GGRGYS-AQISADGKTLVMINGDNVVKQDLTSGSTE 366 (429)
T ss_pred e--cCCCCC-ccCCCCCCEEEEEcCCCEEEEECCCCCeE
Confidence 2 221111 13455578888888888999999888754
No 316
>KOG2394|consensus
Probab=67.44 E-value=77 Score=27.69 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=65.3
Q ss_pred eEEEEecCCeEEEEECCcc-cceee--eeEecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCC-----CCCC-CCc
Q psy16019 7 TMWLGSQNGSVFVHSAVSQ-WRRCL--HSIQLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDG-----QWDL-SKY 74 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~-~~~~l--~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g-----~wd~-~~~ 74 (121)
.+.||=..|.+++++.... ..+.. ....-..+|+||+.. ++.+.|+=++|.+.+|...... .|.. ..+
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 5778888999999886652 11111 112223799999986 5689999999999999664221 1211 112
Q ss_pred eEEEeCC----C-CCceeEeeee------------CCEEEEEeC-CeEEEEeCCCCcE
Q psy16019 75 HTVTLGL----P-HHSVRSLAAV------------YNKVWCGYK-NKIHVVDPKSLDV 114 (121)
Q Consensus 75 ~~i~lg~----~-~~pV~~m~~v------------~~~lw~~~g-n~I~Vi~~~tl~i 114 (121)
..+++.. . ..||.+..+- ++.|+|-++ ....|||-.+.++
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL 324 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH
Confidence 2222221 1 2566665433 366777666 5688888777554
No 317
>KOG1034|consensus
Probab=67.39 E-value=12 Score=30.58 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=36.7
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecC---CCEEEEEEeCC--EEEEEecCCcEEEEEc
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHVQG--RVVCALADGSVAIFRR 63 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~~~--~v~v~LanG~l~Vy~r 63 (121)
|.-+-+|.|.|++++|++.......-.++..+ +.|.+..+..+ .+..-..||+|.-|+|
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 45667899999999999887543222223222 46766666533 3444556677766655
No 318
>KOG1272|consensus
Probab=67.08 E-value=15 Score=31.22 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=27.5
Q ss_pred CCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEE
Q psy16019 83 HHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 83 ~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~ 117 (121)
..||+++++. ++..-+..| +++.|.|..++.-.++
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence 4799999988 477777777 7899999998874444
No 319
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=66.56 E-value=1.1e+02 Score=28.42 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=38.8
Q ss_pred EEEEEe--CCEEEEEec-CCcEEEEEcCCCCC--CCCCCceEEEeCC------CCCceeEeeee--CCEEEEEeC--CeE
Q psy16019 40 LNIVHV--QGRVVCALA-DGSVAIFRRGPDGQ--WDLSKYHTVTLGL------PHHSVRSLAAV--YNKVWCGYK--NKI 104 (121)
Q Consensus 40 ~~i~~~--~~~v~v~La-nG~l~Vy~r~~~g~--wd~~~~~~i~lg~------~~~pV~~m~~v--~~~lw~~~g--n~I 104 (121)
.++... ++.+||+.+ ++.|.+|....+.. ..-+....-..+. -..| ..|++. ++.||++.. ++|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P-~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQP-SGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCc-cEEEEeCCCCEEEEEECCCCeE
Confidence 355554 578999865 56777775432110 0000000000000 0122 235554 467998877 699
Q ss_pred EEEeCCCCcE
Q psy16019 105 HVVDPKSLDV 114 (121)
Q Consensus 105 ~Vi~~~tl~i 114 (121)
.++|+++...
T Consensus 765 rv~D~~tg~~ 774 (1057)
T PLN02919 765 RALDLKTGGS 774 (1057)
T ss_pred EEEECCCCcE
Confidence 9999988654
No 320
>KOG2315|consensus
Probab=66.29 E-value=88 Score=27.18 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=65.4
Q ss_pred CCeEEEEECCcccceeeeeEecC--CCEEEEEEeCC----EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCcee
Q psy16019 14 NGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQG----RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVR 87 (121)
Q Consensus 14 ~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~ 87 (121)
+..+|.++... . ..+++|+ ++|.|.+++.. .|.-|=-=..+++| |++---+..++. .|=.
T Consensus 250 Eq~Lyll~t~g--~--s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif--------nlr~~~v~df~e--gpRN 315 (566)
T KOG2315|consen 250 EQTLYLLATQG--E--SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIF--------NLRGKPVFDFPE--GPRN 315 (566)
T ss_pred cceEEEEEecC--c--eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEE--------cCCCCEeEeCCC--CCcc
Confidence 34677777763 2 3345665 79999998753 24455555788898 565556667766 7878
Q ss_pred EeeeeC--CE-EEEEeCC---eEEEEeCCCCcEEEEEEe
Q psy16019 88 SLAAVY--NK-VWCGYKN---KIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 88 ~m~~v~--~~-lw~~~gn---~I~Vi~~~tl~i~~~~~~ 120 (121)
+|..+. +- +-||.|| .|-|+|..+.+...+|+|
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a 354 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA 354 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence 888773 33 4678885 799999999888877765
No 321
>PHA03098 kelch-like protein; Provisional
Probab=65.73 E-value=78 Score=26.31 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=46.3
Q ss_pred eEEEEECCcc-cceeeeeEecCCCEEEEEEeCCEEEEEecCC---------cEEEEEcCCCCCCCCCCceEEEeCCCCCc
Q psy16019 16 SVFVHSAVSQ-WRRCLHSIQLKDSVLNIVHVQGRVVCALADG---------SVAIFRRGPDGQWDLSKYHTVTLGLPHHS 85 (121)
Q Consensus 16 ~I~v~~~~~~-~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG---------~l~Vy~r~~~g~wd~~~~~~i~lg~~~~p 85 (121)
.++.|+..+. |++ +..++.+-.-.+....++++|+-.+.. .+.+|... .+.|..-++ +..| ..
T Consensus 407 ~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~-~~~W~~~~~----~~~~-r~ 479 (534)
T PHA03098 407 TVECFSLNTNKWSK-GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPV-TNKWTELSS----LNFP-RI 479 (534)
T ss_pred eEEEEeCCCCeeee-cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCC-CCceeeCCC----CCcc-cc
Confidence 5677776542 332 222222222334566778888866531 25666332 234542221 1111 11
Q ss_pred eeEeeeeCCEEEEEeC-------CeEEEEeCCCCc
Q psy16019 86 VRSLAAVYNKVWCGYK-------NKIHVVDPKSLD 113 (121)
Q Consensus 86 V~~m~~v~~~lw~~~g-------n~I~Vi~~~tl~ 113 (121)
-.++...++++|+-.| +.|.++|+++.+
T Consensus 480 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 480 NASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 1234555888887544 468899888764
No 322
>KOG2321|consensus
Probab=65.41 E-value=58 Score=28.68 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=60.8
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEecC-CCEE--EEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCc---eEEEeC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVL--NIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY---HTVTLG 80 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~--~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~---~~i~lg 80 (121)
-|++|.-.-.+|=+++.+ -+-|..+.+. +.+- +|.-..+.+-+|..||.+-.| |...- ..+.++
T Consensus 147 Dly~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw--------DpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW--------DPRDKSRVGTLDAA 216 (703)
T ss_pred cEEEeecCcceEEEEccc--cccccccccccccceeeeecCccceEEecccCceEEEe--------cchhhhhheeeecc
Confidence 355666666788888887 3557777766 4443 444445667777779999887 32221 122222
Q ss_pred ---------CCCCceeEeeeeCCEEEEEeC---CeEEEEeCCCCcE
Q psy16019 81 ---------LPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSLDV 114 (121)
Q Consensus 81 ---------~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~tl~i 114 (121)
+..-.|+++...++-|=.|+| ..|+|.|..+-+.
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 112358888888755544444 5899999987654
No 323
>KOG1240|consensus
Probab=64.96 E-value=1.3e+02 Score=28.84 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=58.2
Q ss_pred CCCeEEEEecCCeEEEEECCcc-cce-eeeeEec-----CCCEEEEEEeC----C-EEEEEecCCcEEEEEcCCCCCCCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQ-WRR-CLHSIQL-----KDSVLNIVHVQ----G-RVVCALADGSVAIFRRGPDGQWDL 71 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~-~~~-~l~~~~l-----~~~V~~i~~~~----~-~v~v~LanG~l~Vy~r~~~g~wd~ 71 (121)
..+++-+||+||.|+++..... .++ ....... +++|.++.... . .+.++..+|.++. ||+
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~--------~D~ 1180 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS--------WDT 1180 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE--------ecc
Confidence 4568889999999999987762 122 1222222 35777777542 2 3444555555555 465
Q ss_pred CCceE---EEeCCCCCceeEeeeeCCEEEEEeC---CeEEEEeCC
Q psy16019 72 SKYHT---VTLGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPK 110 (121)
Q Consensus 72 ~~~~~---i~lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~ 110 (121)
...+. ++......-|+++++.+..=|..-| +.+.+-|..
T Consensus 1181 r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1181 RMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred hhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEee
Confidence 55433 3333334678888888755577666 345555543
No 324
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=64.78 E-value=70 Score=25.48 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCeEEEEec------------CC-eEEEEECCccc-ceeeeeEecC--CCEEEEEEeCCEEEEEecCCcEEEEEc-CCCC
Q psy16019 5 LPTMWLGSQ------------NG-SVFVHSAVSQW-RRCLHSIQLK--DSVLNIVHVQGRVVCALADGSVAIFRR-GPDG 67 (121)
Q Consensus 5 ~~tvwiGt~------------~g-~I~v~~~~~~~-~~~l~~~~l~--~~V~~i~~~~~~v~v~LanG~l~Vy~r-~~~g 67 (121)
.+.||++.. .| +|+++.-.+.. +-...++... .....|....+-|||+..+ .|..|.. +.++
T Consensus 24 ~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~-~i~~~~d~~gdg 102 (367)
T TIGR02604 24 RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPP-DILFLRDKDGDD 102 (367)
T ss_pred CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCC-eEEEEeCCCCCC
Confidence 467899862 34 78887644321 1111111111 2345566554459998655 4555543 3333
Q ss_pred CCCCCCceEE--EeCCC----CCceeEeeee-CCEEEEEeC---------------------CeEEEEeCCCCcEE
Q psy16019 68 QWDLSKYHTV--TLGLP----HHSVRSLAAV-YNKVWCGYK---------------------NKIHVVDPKSLDVI 115 (121)
Q Consensus 68 ~wd~~~~~~i--~lg~~----~~pV~~m~~v-~~~lw~~~g---------------------n~I~Vi~~~tl~i~ 115 (121)
.=|- ..+++ .++.. ......+..- ++.||++.| ..|+-+++.+.++|
T Consensus 103 ~ad~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e 177 (367)
T TIGR02604 103 KADG-EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLR 177 (367)
T ss_pred CCCC-ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEE
Confidence 2221 33433 22221 2334445444 468988777 24788888876655
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=64.10 E-value=86 Score=26.23 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=48.0
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEec-CCcEEEEEcCCCCCCCCCCce--EEEeC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALA-DGSVAIFRRGPDGQWDLSKYH--TVTLG 80 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~--~i~lg 80 (121)
....+.+ .++|.-.||.+... +. ... ..-++..+....-||.+. +++|.||+. +++.. .+++.
T Consensus 43 ngr~v~V-~g~geY~iyt~~~~-r~-k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn-------~~~~~~k~i~~~ 108 (443)
T PF04053_consen 43 NGRFVLV-CGDGEYEIYTALAW-RN-KAF----GSGLSFVWSSRNRYAVLESSSTIKIYKN-------FKNEVVKSIKLP 108 (443)
T ss_dssp TSSEEEE-EETTEEEEEETTTT-EE-EEE----EE-SEEEE-TSSEEEEE-TTS-EEEEET-------TEE-TT-----S
T ss_pred CCCEEEE-EcCCEEEEEEccCC-cc-ccc----CceeEEEEecCccEEEEECCCeEEEEEc-------CccccceEEcCC
Confidence 3445666 77788888885542 21 111 111223333322355555 677888732 22322 34332
Q ss_pred CCCCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019 81 LPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 81 ~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~~~ 120 (121)
.++..|-. +.-|.+...+.|..+|.++.++.+++++
T Consensus 109 ---~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 109 ---FSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDV 144 (443)
T ss_dssp ---S-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS
T ss_pred ---cccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEec
Confidence 34555555 4444445445699999999999999875
No 326
>KOG1064|consensus
Probab=63.79 E-value=18 Score=35.88 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=67.0
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEec--CCCEEEEE--EeCCEEEEEecCCcEEEEEcCC-----------------
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KDSVLNIV--HVQGRVVCALADGSVAIFRRGP----------------- 65 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~~V~~i~--~~~~~v~v~LanG~l~Vy~r~~----------------- 65 (121)
.-..|.+||.+-+|.-.. ++.+-.++. ++.|+.+. |.+|+-=++-+||.|..|+-++
T Consensus 2222 ~Yltgs~dgsv~~~~w~~--~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGH--GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFR 2299 (2439)
T ss_pred eEEecCCCceEEEEeccC--CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCcccccee
Confidence 345688899888877555 233333322 24454444 2344555555666666554332
Q ss_pred -------------C----CCCCCCCceE---EEeCCCCCceeEeeeeC-CEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019 66 -------------D----GQWDLSKYHT---VTLGLPHHSVRSLAAVY-NKVWCGYK--NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 66 -------------~----g~wd~~~~~~---i~lg~~~~pV~~m~~v~-~~lw~~~g--n~I~Vi~~~tl~i~~~~~ 119 (121)
+ +.||..-+.. |.... ...++|++.+. .+|..++| ..|.++|..-.++.|.|+
T Consensus 2300 Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H-~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2300 FIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH-DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred eeehhhhccccCCCCCcccchhcccCcccceeeeec-CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence 2 2477654422 33222 27899999996 56888777 579999998887777665
No 327
>KOG4532|consensus
Probab=63.54 E-value=77 Score=25.50 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=62.2
Q ss_pred ecCCeEEEEECCcccceeee-eE-ecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE----EEeCC--
Q psy16019 12 SQNGSVFVHSAVSQWRRCLH-SI-QLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT----VTLGL-- 81 (121)
Q Consensus 12 t~~g~I~v~~~~~~~~~~l~-~~-~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~----i~lg~-- 81 (121)
.++..++.|+..+.....++ .. ...|.=+|--+. +.+.-|+..||+++|| |+.+..+ ++=..
T Consensus 177 gds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~--------DVR~~~tpm~~~sstrp~ 248 (344)
T KOG4532|consen 177 GDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY--------DVRNMATPMAEISSTRPH 248 (344)
T ss_pred cCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE--------EecccccchhhhcccCCC
Confidence 35678888887765333333 22 223555555544 4466789999999999 4444333 22222
Q ss_pred CCCceeEeeee----CCEEEEEeC-CeEEEEeCCCCcEEE
Q psy16019 82 PHHSVRSLAAV----YNKVWCGYK-NKIHVVDPKSLDVIR 116 (121)
Q Consensus 82 ~~~pV~~m~~v----~~~lw~~~g-n~I~Vi~~~tl~i~~ 116 (121)
+...+|..-.. .+-|..+-+ ..+.|+|+.++.-..
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 35678876666 266788888 789999999986543
No 328
>KOG1896|consensus
Probab=62.93 E-value=1.5e+02 Score=28.50 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=61.6
Q ss_pred CCeEEEEECCcccceeeeeEecC--CCEEEEEEe-----------CCEEEEEecC---------CcEEEEEcCC---CCC
Q psy16019 14 NGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHV-----------QGRVVCALAD---------GSVAIFRRGP---DGQ 68 (121)
Q Consensus 14 ~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~-----------~~~v~v~Lan---------G~l~Vy~r~~---~g~ 68 (121)
.++|.+.+..+ |+- .-.+.++ .-|+++++. +.++.||.+. |.+.+|+--. ...
T Consensus 1003 ~f~i~LisP~s-w~v-i~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg 1080 (1366)
T KOG1896|consen 1003 QFSIQLISPES-WEV-IDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG 1080 (1366)
T ss_pred cceeEEecCCc-ccc-ccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCC
Confidence 35667776553 332 2225555 578888874 4578888765 8899997632 221
Q ss_pred CCCCCceEEEeC--CCCCceeEeeeeCCEEEEEeCCeEEEEeC
Q psy16019 69 WDLSKYHTVTLG--LPHHSVRSLAAVYNKVWCGYKNKIHVVDP 109 (121)
Q Consensus 69 wd~~~~~~i~lg--~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~ 109 (121)
-.....++-.+. .-..||..++-+.+.|-.|-|.+|+|-+.
T Consensus 1081 kP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1081 KPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKL 1123 (1366)
T ss_pred CCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEe
Confidence 122333332232 22579999999999999999999999876
No 329
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=62.61 E-value=53 Score=27.27 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=35.5
Q ss_pred CCCCeEEEEec-CC--------eEEEEECCcccceeeeeEecC--CCEEEEEEeCCEEEEEecCCcEEEEEcC
Q psy16019 3 SVLPTMWLGSQ-NG--------SVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQGRVVCALADGSVAIFRRG 64 (121)
Q Consensus 3 ~~~~tvwiGt~-~g--------~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~~~~v~v~LanG~l~Vy~r~ 64 (121)
..++|+.+|+= ++ .|.+++... .+.....+.| ..|++=...++++.+++++|.+..|+-.
T Consensus 406 ~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~--~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~ 476 (504)
T PF10433_consen 406 TDEPTLAAGNVGDGRIVQVTPKGIRLIDLED--GKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELD 476 (504)
T ss_dssp SSS-EEEEEEETTTEEEEEESSEEEEEESSS--TSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEE
T ss_pred CCCCCeEEEEcCCCeEEEEecCeEEEEECCC--CeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEE
Confidence 45778888885 33 344444433 2333333344 4777777788899999999999999654
No 330
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=62.40 E-value=81 Score=25.38 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=66.9
Q ss_pred CCCCeEEEEec---CCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEe-cCCcEEEEEcCCCCCCCCCCce-
Q psy16019 3 SVLPTMWLGSQ---NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYH- 75 (121)
Q Consensus 3 ~~~~tvwiGt~---~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~- 75 (121)
.....+|+.-. ++.+.+++... .+..++++.-..-+.+... .+++||+- .++.|.++.-...-.|- ..+.
T Consensus 125 ~~~~~vYV~n~~~~~~~vsvid~~t--~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~ 201 (381)
T COG3391 125 PDGKYVYVANAGNGNNTVSVIDAAT--NKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS 201 (381)
T ss_pred CCCCEEEEEecccCCceEEEEeCCC--CeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc
Confidence 34567888776 68888888777 4555555553322555554 56799998 67889998533222221 1111
Q ss_pred EEEeCCCCCcee-EeeeeCCEEEEEeCC----eEEEEeCCCCcEEEE
Q psy16019 76 TVTLGLPHHSVR-SLAAVYNKVWCGYKN----KIHVVDPKSLDVIRP 117 (121)
Q Consensus 76 ~i~lg~~~~pV~-~m~~v~~~lw~~~gn----~I~Vi~~~tl~i~~~ 117 (121)
.+.++. .|-. .+.+.++.+++.+.+ +|.++|..++.+...
T Consensus 202 ~~~~~~--~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 202 LVGVGT--GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ccccCC--CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 233333 3421 233346778888774 799999999877654
No 331
>PRK01742 tolB translocation protein TolB; Provisional
Probab=61.76 E-value=86 Score=25.45 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=45.5
Q ss_pred CeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEe-cCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEee-
Q psy16019 15 GSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCAL-ADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLA- 90 (121)
Q Consensus 15 g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~- 90 (121)
..|++++.....++.+.. .+....+..+.. .+++.++ .+|..-+|.-+.++ .....++-+. ..+....
T Consensus 228 ~~i~i~dl~tg~~~~l~~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~----~~~~~lt~~~--~~~~~~~w 299 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS--FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG----GTPSQLTSGA--GNNTEPSW 299 (429)
T ss_pred cEEEEEeCCCCceEEEec--CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCC----CCeEeeccCC--CCcCCEEE
Confidence 368888876532333333 333333445543 3455544 57776666432211 1122232222 2333333
Q ss_pred -eeCCEEEEEeC----CeEEEEeCCCCcEE
Q psy16019 91 -AVYNKVWCGYK----NKIHVVDPKSLDVI 115 (121)
Q Consensus 91 -~v~~~lw~~~g----n~I~Vi~~~tl~i~ 115 (121)
+.++.|+++.. .+|+.++..+.+..
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 33566766542 37888887766543
No 332
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=61.59 E-value=29 Score=27.07 Aligned_cols=93 Identities=9% Similarity=0.125 Sum_probs=53.5
Q ss_pred eEEEEECCcccceeeeeEecCCCEE-------EEEEeC-------CEEEEEecC-CcEEEEEcCCCCCCCCCCc------
Q psy16019 16 SVFVHSAVSQWRRCLHSIQLKDSVL-------NIVHVQ-------GRVVCALAD-GSVAIFRRGPDGQWDLSKY------ 74 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~~l~~~V~-------~i~~~~-------~~v~v~Lan-G~l~Vy~r~~~g~wd~~~~------ 74 (121)
+|.+|++.. .+.++++.+|+.+. +|.... ..+|++-+- +-|.||+...+..|-+...
T Consensus 35 KLv~~Dl~t--~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 35 KLVAFDLKT--NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp EEEEEETTT--TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred EEEEEECCC--CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence 899999988 46788888885433 344332 478988777 5799998888776744332
Q ss_pred --eEEEeCCC----CCceeEeeeeC-----CEEEEEe--CCeEEEEeCC
Q psy16019 75 --HTVTLGLP----HHSVRSLAAVY-----NKVWCGY--KNKIHVVDPK 110 (121)
Q Consensus 75 --~~i~lg~~----~~pV~~m~~v~-----~~lw~~~--gn~I~Vi~~~ 110 (121)
..+.++.. ...+--|++.. +.||.+. |.+++-+.+.
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence 11222220 12344445442 4677663 4566666543
No 333
>KOG1064|consensus
Probab=61.00 E-value=7.7 Score=38.15 Aligned_cols=86 Identities=17% Similarity=0.288 Sum_probs=57.5
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE---Ee
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV---TL 79 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i---~l 79 (121)
+.+.++.-|..+|.+.+|+..+ ++..|+++- ...+....-|.+.|++-|++ ++.+.++ +.
T Consensus 2346 P~~qllisggr~G~v~l~D~rq--rql~h~~~~-------~~~~~~f~~~ss~g~ikIw~--------~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2346 PKHQLLISGGRKGEVCLFDIRQ--RQLRHTFQA-------LDTREYFVTGSSEGNIKIWR--------LSEFGLLHTFPS 2408 (2439)
T ss_pred CcceEEEecCCcCcEEEeehHH--HHHHHHhhh-------hhhhheeeccCcccceEEEE--------ccccchhhcCch
Confidence 3456788899999999999998 666676654 22455677788899999974 4444332 11
Q ss_pred CCCCCceeEeeeeCCEEEEEeCCeEEEE
Q psy16019 80 GLPHHSVRSLAAVYNKVWCGYKNKIHVV 107 (121)
Q Consensus 80 g~~~~pV~~m~~v~~~lw~~~gn~I~Vi 107 (121)
......+ ...++.++.+|-.|+|++=
T Consensus 2409 e~ak~gf--Fr~~g~Q~~v~~~nrifsC 2434 (2439)
T KOG1064|consen 2409 EHAKQGF--FRNIGMQINVGQCNRIFSC 2434 (2439)
T ss_pred hhcccch--hhhcCceeeeccCceEEEe
Confidence 1122333 4455688888888888764
No 334
>KOG2695|consensus
Probab=59.96 E-value=29 Score=28.65 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=56.1
Q ss_pred eEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcC---CCCCCCCCCceEEEeCCCCCceeEee
Q psy16019 16 SVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRG---PDGQWDLSKYHTVTLGLPHHSVRSLA 90 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~---~~g~wd~~~~~~i~lg~~~~pV~~m~ 90 (121)
.+.+.+.+. ..-++|...+-|+.+.|. ++.||.|+-||.|.+++.. .+..|- ...+-.+ .+|+||.
T Consensus 235 qv~L~nvet---g~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~-----a~rlyh~-Ssvtslq 305 (425)
T KOG2695|consen 235 QVLLTNVET---GHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC-----AQRLYHD-SSVTSLQ 305 (425)
T ss_pred eeEEEEeec---ccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc-----eEEEEcC-cchhhhh
Confidence 444445443 223455545678877775 6899999999999999653 333342 3333222 6788877
Q ss_pred eeC---CEEEEEeC-CeEEEEeCCCCcE
Q psy16019 91 AVY---NKVWCGYK-NKIHVVDPKSLDV 114 (121)
Q Consensus 91 ~v~---~~lw~~~g-n~I~Vi~~~tl~i 114 (121)
... -.|-++.= .+|...|..-.+-
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhc
Confidence 663 33443333 6899888877666
No 335
>KOG0268|consensus
Probab=59.42 E-value=17 Score=30.09 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=41.6
Q ss_pred CeEEEEecCCeEEEEECCcccceee-eeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCL-HSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGP 65 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l-~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~ 65 (121)
.-.--|+-|.+|-||..++.-.+.. ++=++ ..|+|.+|. ..+|+.|..||+|-+|.-+.
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRM-q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRM-QHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhh-heeeEEEEeccccEEEecCCCcceeeeecch
Confidence 3455688899999999988422211 11111 469999997 44899999999999996653
No 336
>KOG0771|consensus
Probab=59.23 E-value=22 Score=29.52 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=33.7
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cC-CCEEEEEEeCC
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LK-DSVLNIVHVQG 47 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~-~~V~~i~~~~~ 47 (121)
+-....+-+||.||.+.||++.+ -++++-++ .+ ..|+.+.+.++
T Consensus 290 S~dGkf~AlGT~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 290 SDDGKFLALGTMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred cCCCcEEEEeccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCC
Confidence 34566889999999999999998 46666553 33 58999998864
No 337
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=58.68 E-value=87 Score=27.91 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=24.9
Q ss_pred ecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCC
Q psy16019 34 QLKDSVLNIVHV--QGRVVCALADGSVAIFRRGP 65 (121)
Q Consensus 34 ~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~ 65 (121)
.++..|.+|... +..++++.+||+|-+|+|..
T Consensus 257 ~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t 290 (753)
T PF11635_consen 257 TLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNT 290 (753)
T ss_pred ccCCeEEEEEecccCcEEEEEEcCCeEEEEecCc
Confidence 344567777754 66899999999999999864
No 338
>KOG4714|consensus
Probab=58.40 E-value=49 Score=26.40 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=59.7
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeE---ecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSI---QLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL 81 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~---~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~ 81 (121)
.+-|.+|-+||.+-+++... ..+..+++ .+-.+=.|+.++.+.+ +++|-..+=.-.+---|++++.+++....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i---~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSI---LSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred CCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeecccEE---ecCCcceEeeccceeeecccccccccccc
Confidence 34689999999999999765 23322322 2222333455555544 33433333222222347888777742221
Q ss_pred -CCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCC
Q psy16019 82 -PHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSL 112 (121)
Q Consensus 82 -~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl 112 (121)
....|.++.... ..+.||.+ ..|-+.|++.+
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~ 212 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV 212 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccc
Confidence 124577777663 56788888 46888888765
No 339
>KOG1275|consensus
Probab=58.35 E-value=43 Score=30.98 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=53.1
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeCCEEEEEecCCcEEEEEcC-CCCCCCCCCceEE-EeCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQGRVVCALADGSVAIFRRG-PDGQWDLSKYHTV-TLGL 81 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~~~v~v~LanG~l~Vy~r~-~~g~wd~~~~~~i-~lg~ 81 (121)
...++.|.+.|.+.+-+.++ -+..+++.. .++|.++-..+|.+....-.+...-+--+ --..||+...+.| +++.
T Consensus 187 nr~lf~G~t~G~V~LrD~~s--~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~ 264 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLRDPNS--FETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF 264 (1118)
T ss_pred CcEEEeecccceEEeecCCc--CceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc
Confidence 45688999999999999988 578899965 58999999999987777666554221111 1234688777653 4443
Q ss_pred C
Q psy16019 82 P 82 (121)
Q Consensus 82 ~ 82 (121)
|
T Consensus 265 ~ 265 (1118)
T KOG1275|consen 265 P 265 (1118)
T ss_pred c
Confidence 3
No 340
>PRK00178 tolB translocation protein TolB; Provisional
Probab=58.28 E-value=96 Score=24.89 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=18.6
Q ss_pred eeeCCEEEEEeC----CeEEEEeCCCCcEEE
Q psy16019 90 AAVYNKVWCGYK----NKIHVVDPKSLDVIR 116 (121)
Q Consensus 90 ~~v~~~lw~~~g----n~I~Vi~~~tl~i~~ 116 (121)
.+.++.|++... .+|+++|..+.+.++
T Consensus 295 spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 295 GKDGRTLYFTSDRGGKPQIYKVNVNGGRAER 325 (430)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 344577766543 479999998888654
No 341
>KOG1897|consensus
Probab=58.25 E-value=1.6e+02 Score=27.55 Aligned_cols=47 Identities=28% Similarity=0.335 Sum_probs=31.4
Q ss_pred CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeC
Q psy16019 46 QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY 93 (121)
Q Consensus 46 ~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~ 93 (121)
..++++|++||.+.-|--+.... -+.+++-.++|..+-..|.....+
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg-~lsd~Kk~~lGt~P~~Lr~f~sk~ 641 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTG-QLSDRKKVTLGTQPISLRTFSSKS 641 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccc-eEccccccccCCCCcEEEEEeeCC
Confidence 56899999999998887653211 356667778888434445544444
No 342
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=58.25 E-value=1e+02 Score=25.20 Aligned_cols=112 Identities=18% Similarity=0.141 Sum_probs=66.0
Q ss_pred CCCCeEEEEecC---CeEEEEECCccc-c-eeeeeEecCCCE-EEEEE--eCCEEEEEecC-CcEEEEEcCCCCCCCCCC
Q psy16019 3 SVLPTMWLGSQN---GSVFVHSAVSQW-R-RCLHSIQLKDSV-LNIVH--VQGRVVCALAD-GSVAIFRRGPDGQWDLSK 73 (121)
Q Consensus 3 ~~~~tvwiGt~~---g~I~v~~~~~~~-~-~~l~~~~l~~~V-~~i~~--~~~~v~v~Lan-G~l~Vy~r~~~g~wd~~~ 73 (121)
..|..++.+-++ |.|-.|...... + ..+....++.+- .-+.. .+..||+|.=. |.|.||+.+.+|. +.+
T Consensus 49 ~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~--l~~ 126 (346)
T COG2706 49 PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGS--LQP 126 (346)
T ss_pred CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCc--ccc
Confidence 345678888764 788888876521 1 234555566432 22333 34478877654 8999999988874 333
Q ss_pred c-eE-EEeCC-C----CCc-eeE--eeeeCCEEEEEe-C-CeEEEEeCCCCcEEE
Q psy16019 74 Y-HT-VTLGL-P----HHS-VRS--LAAVYNKVWCGY-K-NKIHVVDPKSLDVIR 116 (121)
Q Consensus 74 ~-~~-i~lg~-~----~~p-V~~--m~~v~~~lw~~~-g-n~I~Vi~~~tl~i~~ 116 (121)
+ .+ ...|. | ..| +.+ +.+.++.||.-+ | ++|++++.+.++++.
T Consensus 127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 127 VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccc
Confidence 3 22 22222 1 122 333 334456676644 3 799999999877664
No 343
>PRK04922 tolB translocation protein TolB; Provisional
Probab=58.20 E-value=1e+02 Score=25.06 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=43.8
Q ss_pred CeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEE-EEecCCc--EEEEEcCCCCCCCCCCceEEEeCCCCCcee--
Q psy16019 15 GSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVV-CALADGS--VAIFRRGPDGQWDLSKYHTVTLGLPHHSVR-- 87 (121)
Q Consensus 15 g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~-v~LanG~--l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~-- 87 (121)
..|++++.....++.+. ..+....+..+. +.+++ +...+|. |.+|+ ++......+........
T Consensus 228 ~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d--------~~~g~~~~lt~~~~~~~~~ 297 (433)
T PRK04922 228 SAIYVQDLATGQRELVA--SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD--------LGSRQLTRLTNHFGIDTEP 297 (433)
T ss_pred cEEEEEECCCCCEEEec--cCCCCccCceECCCCCEEEEEEeCCCCceEEEEE--------CCCCCeEECccCCCCccce
Confidence 36888887653222222 223333333443 33454 4445554 55553 32222222221101111
Q ss_pred EeeeeCCEEEEEeC----CeEEEEeCCCCcEEE
Q psy16019 88 SLAAVYNKVWCGYK----NKIHVVDPKSLDVIR 116 (121)
Q Consensus 88 ~m~~v~~~lw~~~g----n~I~Vi~~~tl~i~~ 116 (121)
+..+.++.|.++.. .+|+++|..+.+.++
T Consensus 298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 23344566766553 369999988877654
No 344
>PHA02713 hypothetical protein; Provisional
Probab=57.85 E-value=1.2e+02 Score=25.88 Aligned_cols=78 Identities=8% Similarity=0.168 Sum_probs=37.2
Q ss_pred eEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEec-CC-----cEEEEEcCCCCCCCCCCceEEEeCCCCCcee--
Q psy16019 16 SVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALA-DG-----SVAIFRRGPDGQWDLSKYHTVTLGLPHHSVR-- 87 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~La-nG-----~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~-- 87 (121)
.++.|+...+.-..+..+..|-.=.+....++++||-.+ +| ++-.|.... ..|.. +...+.|..
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~-~~W~~-------~~~mp~~r~~~ 392 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD-DKWKM-------LPDMPIALSSY 392 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC-CeEEE-------CCCCCcccccc
Confidence 355666544311122223223233456677889988655 33 255664433 34542 222122322
Q ss_pred EeeeeCCEEEEEeC
Q psy16019 88 SLAAVYNKVWCGYK 101 (121)
Q Consensus 88 ~m~~v~~~lw~~~g 101 (121)
+++..+++|++--|
T Consensus 393 ~~~~~~g~IYviGG 406 (557)
T PHA02713 393 GMCVLDQYIYIIGG 406 (557)
T ss_pred cEEEECCEEEEEeC
Confidence 34455788887433
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=57.76 E-value=35 Score=30.86 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=42.2
Q ss_pred CCCCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe-CCEEEEEecCCcEEEEEc
Q psy16019 2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV-QGRVVCALADGSVAIFRR 63 (121)
Q Consensus 2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r 63 (121)
++..+.|-+|+++|.|-+|+-.. ++....| .|-+||+.|-.. +++=.+|.-+-.|+++.-
T Consensus 585 Tt~~G~iavgs~~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 585 TTEDGYIAVGSNKGDIRLYDRLG--KRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred ecCCceEEEEeCCCcEEeecccc--hhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 56788999999999999999544 4444444 355799888753 455556666666666653
No 346
>KOG1009|consensus
Probab=57.73 E-value=25 Score=29.36 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=38.4
Q ss_pred EEEEecCCeEEEEECCcccceeeeeE-ecC-CCEEEEEEeCC--EEEEEecCCc--EEEE
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCLHSI-QLK-DSVLNIVHVQG--RVVCALADGS--VAIF 61 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l~~~-~l~-~~V~~i~~~~~--~v~v~LanG~--l~Vy 61 (121)
.-++|+ ..+|||+.+. -+++..+ .++ .++++|.+.++ .++++..||- +.-|
T Consensus 315 faiAt~-~svyvydtq~--~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 315 FAIATK-NSVYVYDTQT--LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred EEEeec-ceEEEecccc--ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 346666 4789999887 3455555 566 79999999987 8999999996 4455
No 347
>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....
Probab=57.68 E-value=21 Score=29.16 Aligned_cols=47 Identities=9% Similarity=0.043 Sum_probs=26.8
Q ss_pred EEEEEecCCcEE-EEEcCCCCCCCCCCceE--EEeCCCCCceeEeeeeCC
Q psy16019 48 RVVCALADGSVA-IFRRGPDGQWDLSKYHT--VTLGLPHHSVRSLAAVYN 94 (121)
Q Consensus 48 ~v~v~LanG~l~-Vy~r~~~g~wd~~~~~~--i~lg~~~~pV~~m~~v~~ 94 (121)
-+|+|.++|.|. +..-..++.-...+..+ +.+-.+++||+.|.+..+
T Consensus 383 V~flGT~~G~l~K~v~~~~~~~~~~~~~~iee~~~~~~~~pI~~~~l~~~ 432 (433)
T PF01403_consen 383 VAFLGTDDGRLHKKVVLSNSSSGHYESYIIEEIQVFPDSEPIQSMKLSPK 432 (433)
T ss_dssp EEEEEETTSEEEEEEEESSSSTCT-EEEEEEEEE-STSC-EEEEEEEETT
T ss_pred EEEEecCCceEEEEEEecCCCCcccccEEEEEEeecCCCCceEEEEeccC
Confidence 599999999998 54433322101111122 455555689999998753
No 348
>KOG1900|consensus
Probab=57.35 E-value=86 Score=29.98 Aligned_cols=105 Identities=13% Similarity=0.174 Sum_probs=62.1
Q ss_pred CCCCeEEEEecCCeEEEEECCcccce-----eeeeEecC---CCEEEEEEe-CCEEEEEecCCcEEEEEc--CCCCCCCC
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRR-----CLHSIQLK---DSVLNIVHV-QGRVVCALADGSVAIFRR--GPDGQWDL 71 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~-----~l~~~~l~---~~V~~i~~~-~~~v~v~LanG~l~Vy~r--~~~g~wd~ 71 (121)
..|..+.++|.- .|++|...-.... -..+++++ ..|.||.|. ++++|-|.+||. +|+- .....|-.
T Consensus 138 ~IqhlLvvaT~~-ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~ 214 (1311)
T KOG1900|consen 138 EIQHLLVVATPV-EIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFG 214 (1311)
T ss_pred hhheeEEecccc-eEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhh
Confidence 356678888874 5666653332111 12345555 489999964 679999999995 4444 34455755
Q ss_pred CCce---------------EEEeC-CCCCceeEeeeeC--CEEEEEeC-CeEEEEeCC
Q psy16019 72 SKYH---------------TVTLG-LPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPK 110 (121)
Q Consensus 72 ~~~~---------------~i~lg-~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~ 110 (121)
..-+ ++++. ....||+-|++-+ +-++.=.. ..|.+.|..
T Consensus 215 ~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 215 SRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred cccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEcc
Confidence 4222 23343 3357999999886 34555333 444444443
No 349
>PHA02790 Kelch-like protein; Provisional
Probab=57.12 E-value=1.1e+02 Score=25.37 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=39.8
Q ss_pred EEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeCCEEEEEeC-------CeEEEEeCCCC
Q psy16019 40 LNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK-------NKIHVVDPKSL 112 (121)
Q Consensus 40 ~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~~~lw~~~g-------n~I~Vi~~~tl 112 (121)
.+....++++||.. |..-+|... .+.|..-++ +..|... -+++..+++||+--| +.|.++|+++.
T Consensus 401 ~~~~~~~~~IYv~G--G~~e~ydp~-~~~W~~~~~----m~~~r~~-~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 401 SCALVFGRRLFLVG--RNAEFYCES-SNTWTLIDD----PIYPRDN-PELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ceEEEECCEEEEEC--CceEEecCC-CCcEeEcCC----CCCCccc-cEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 35566788999987 567788553 356753222 1111111 145677888888544 46888888775
Q ss_pred c
Q psy16019 113 D 113 (121)
Q Consensus 113 ~ 113 (121)
+
T Consensus 473 ~ 473 (480)
T PHA02790 473 S 473 (480)
T ss_pred e
Confidence 4
No 350
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=56.63 E-value=69 Score=22.72 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=42.8
Q ss_pred EEEEEecCCcEEEEEcCCCCC----CCCCCceEEEeCCCCCceeEeeee-------CCEEEEEeCCeEEEEeCCC
Q psy16019 48 RVVCALADGSVAIFRRGPDGQ----WDLSKYHTVTLGLPHHSVRSLAAV-------YNKVWCGYKNKIHVVDPKS 111 (121)
Q Consensus 48 ~v~v~LanG~l~Vy~r~~~g~----wd~~~~~~i~lg~~~~pV~~m~~v-------~~~lw~~~gn~I~Vi~~~t 111 (121)
.+-+|..-|+|.|+....... ++ ++-.+++++. .|+||+.- .+.|..|..+.+.++|.+.
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~-~~i~~LNin~---~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQD-SDISFLNINQ---EITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred eEEEEecCCEEEEECCCcccccccccc-CceeEEECCC---ceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 466677788999997653321 21 3336677766 88888644 3889999999999998765
No 351
>KOG1898|consensus
Probab=56.60 E-value=52 Score=30.84 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=39.3
Q ss_pred CCeEEEEECCcccce--eeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEc
Q psy16019 14 NGSVFVHSAVSQWRR--CLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRR 63 (121)
Q Consensus 14 ~g~I~v~~~~~~~~~--~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r 63 (121)
+|.+|.|....+-++ -+++...|.+|..|+-..+++++|-++ .|.+|.-
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~-~l~~Ydl 961 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGR-FLRLYDL 961 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEeccc-EEEEeeC
Confidence 677999987664333 366778889999999999999999988 8899954
No 352
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=56.58 E-value=91 Score=27.03 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=53.1
Q ss_pred eeeEecCCCEEEEEEeCCEEE-EEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeCCEEEEEeCCeEEEEe
Q psy16019 30 LHSIQLKDSVLNIVHVQGRVV-CALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVD 108 (121)
Q Consensus 30 l~~~~l~~~V~~i~~~~~~v~-v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~ 108 (121)
.+-+.|+.-|.|=.....+|| ..--+|.=.+|+-+-+|. |+..+. .+-+ +=-|.+-.-++++-...+..|+++|
T Consensus 219 eK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGk-DlrrHT--nFtd--YY~R~~nsDGkrIvFq~~GdIylyd 293 (668)
T COG4946 219 EKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGK-DLRRHT--NFTD--YYPRNANSDGKRIVFQNAGDIYLYD 293 (668)
T ss_pred eeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCc-hhhhcC--Cchh--ccccccCCCCcEEEEecCCcEEEeC
Confidence 344566666666555666664 455567777887765552 443332 2333 3334555567889999999999999
Q ss_pred CCCCcEEE
Q psy16019 109 PKSLDVIR 116 (121)
Q Consensus 109 ~~tl~i~~ 116 (121)
++|-.+++
T Consensus 294 P~td~lek 301 (668)
T COG4946 294 PETDSLEK 301 (668)
T ss_pred CCcCccee
Confidence 99987775
No 353
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=54.25 E-value=1.1e+02 Score=25.63 Aligned_cols=75 Identities=8% Similarity=0.217 Sum_probs=43.9
Q ss_pred eCCEEEEEecCCcEEEEEcCC----CCCCCCCCceE----------EEeC----C-CCCcee--Eeee----eCCEEEEE
Q psy16019 45 VQGRVVCALADGSVAIFRRGP----DGQWDLSKYHT----------VTLG----L-PHHSVR--SLAA----VYNKVWCG 99 (121)
Q Consensus 45 ~~~~v~v~LanG~l~Vy~r~~----~g~wd~~~~~~----------i~lg----~-~~~pV~--~m~~----v~~~lw~~ 99 (121)
.++.++|++.||.|..+.|.. ++.|....+.- +... . ....+. .+.. -.+.|+.-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 678999999999999999986 33454322211 0000 0 011222 2222 24778899
Q ss_pred eC-CeEEEEeCCCCcEEEEEE
Q psy16019 100 YK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 100 ~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
|. +++++=|.+|++..+++.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 99 589999999999977654
No 354
>PRK05137 tolB translocation protein TolB; Provisional
Probab=54.23 E-value=1.2e+02 Score=24.64 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=45.8
Q ss_pred CCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEE-EEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeE--
Q psy16019 14 NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRV-VCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRS-- 88 (121)
Q Consensus 14 ~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v-~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~-- 88 (121)
+..|++++......+.+. ..+..+....+. +.++ |....+|.--+|. ||++......+.......+.
T Consensus 225 ~~~i~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~------~d~~~~~~~~Lt~~~~~~~~~~ 296 (435)
T PRK05137 225 RPRVYLLDLETGQRELVG--NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT------MDLRSGTTTRLTDSPAIDTSPS 296 (435)
T ss_pred CCEEEEEECCCCcEEEee--cCCCcccCcEECCCCCEEEEEEecCCCceEEE------EECCCCceEEccCCCCccCcee
Confidence 357888887653222221 234444444443 2233 3444455533332 13333333333321122222
Q ss_pred eeeeCCEEEEEeC----CeEEEEeCCCCcEEE
Q psy16019 89 LAAVYNKVWCGYK----NKIHVVDPKSLDVIR 116 (121)
Q Consensus 89 m~~v~~~lw~~~g----n~I~Vi~~~tl~i~~ 116 (121)
..+.++.|++.+. .+|+++|..+.+.++
T Consensus 297 ~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 297 YSPDGSQIVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred EcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence 3334567766552 479999988877654
No 355
>KOG4499|consensus
Probab=53.63 E-value=83 Score=24.92 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=33.9
Q ss_pred CCeEEEEec-CCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC---EEEEEecC
Q psy16019 5 LPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG---RVVCALAD 55 (121)
Q Consensus 5 ~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~---~v~v~Lan 55 (121)
.+.+|+.+- -|+++-++... -|.|+.+++| ..|+|-++-.. .+||..|.
T Consensus 222 eG~L~Va~~ng~~V~~~dp~t--GK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTT--GKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CCcEEEEEecCcEEEEECCCC--CcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 456788884 44677777666 4889999999 78888777543 45555443
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=53.44 E-value=1.2e+02 Score=24.73 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=23.6
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecC--CCEEEEEEeCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQG 47 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~~~ 47 (121)
....|.+=+++|.++|.+..= ++++-.+.+. ....+|..+++
T Consensus 227 ng~~iAl~t~~g~l~v~ssDf--~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 227 NGKFIALFTDSGNLWVVSSDF--SEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred CCCEEEEEECCCCEEEEECcc--cceeEEeecCcCCCCcEEEEECC
Confidence 344566666777777766433 3444444444 45666666654
No 357
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=53.38 E-value=34 Score=27.19 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=36.0
Q ss_pred CCeEEEEecCCeEEEE-ECCcccceeeeeEecCCCEEEEEEe-CCEEEEEecCCcEEEE
Q psy16019 5 LPTMWLGSQNGSVFVH-SAVSQWRRCLHSIQLKDSVLNIVHV-QGRVVCALADGSVAIF 61 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~-~~~~~~~~~l~~~~l~~~V~~i~~~-~~~v~v~LanG~l~Vy 61 (121)
.+.+|++..+|.|++= +--..|++....-++|+....|++. +++-||=..||.|.=|
T Consensus 243 ~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 243 PNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 4789999999976652 2333455544444678888889986 4699999999999877
No 358
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=52.31 E-value=1e+02 Score=27.43 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=39.6
Q ss_pred EEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeCC---C--CCceeEeeee-CCEEEEEeCCeEEEEeCCC
Q psy16019 42 IVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGL---P--HHSVRSLAAV-YNKVWCGYKNKIHVVDPKS 111 (121)
Q Consensus 42 i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg~---~--~~pV~~m~~v-~~~lw~~~gn~I~Vi~~~t 111 (121)
++|..+.+|.= .++++.+| ++.+.++ |++.. . .++| +|.+. .+++-.+..|+|+.+|..=
T Consensus 238 f~Y~~G~LY~l-~~~~i~~y--------sip~f~~~~tI~l~~ii~~~~~~~v-Sl~~~s~nRvLLs~~nkIyLld~~~ 306 (670)
T PF10395_consen 238 FCYQFGKLYQL-SKKTISSY--------SIPNFQIQKTISLPSIIDKESDDLV-SLKPPSPNRVLLSVNNKIYLLDLKF 306 (670)
T ss_pred EEEeCCEEEEE-eCCEEEEE--------EcCCceEEEEEEechhhccccccce-EeecCCCCeEEEEcCCEEEEEeehh
Confidence 45666666654 77777777 5555543 55541 1 1344 55544 7999999999999998753
No 359
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=52.07 E-value=1.2e+02 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=16.8
Q ss_pred eeCCEEEEEeC----CeEEEEeCCCCcEEE
Q psy16019 91 AVYNKVWCGYK----NKIHVVDPKSLDVIR 116 (121)
Q Consensus 91 ~v~~~lw~~~g----n~I~Vi~~~tl~i~~ 116 (121)
+.++.|.+... .+|+++|..+.+.++
T Consensus 287 ~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~ 316 (417)
T TIGR02800 287 PDGKSIAFTSDRGGSPQIYMMDADGGEVRR 316 (417)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 34566644332 379999998877653
No 360
>PRK03629 tolB translocation protein TolB; Provisional
Probab=51.27 E-value=1.3e+02 Score=24.44 Aligned_cols=97 Identities=10% Similarity=0.070 Sum_probs=48.2
Q ss_pred EEecCC--eEEEEECCcccceeeeeE-ecCCCEEEEEEeC--CE-EEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019 10 LGSQNG--SVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQ--GR-VVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH 83 (121)
Q Consensus 10 iGt~~g--~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~--~~-v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~ 83 (121)
....+| .|++++.... + ...+ ..+..+....+.+ .+ +|++-.+|..-+|.-+.++ ...+.+....
T Consensus 260 ~~~~~g~~~I~~~d~~tg--~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~----g~~~~lt~~~-- 330 (429)
T PRK03629 260 ALSKTGSLNLYVMDLASG--Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING----GAPQRITWEG-- 330 (429)
T ss_pred EEcCCCCcEEEEEECCCC--C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC----CCeEEeecCC--
Confidence 334444 5888887652 2 2222 2233455555553 23 3444444555566433221 1223333222
Q ss_pred Ccee--EeeeeCCEEEEEeC----CeEEEEeCCCCcEE
Q psy16019 84 HSVR--SLAAVYNKVWCGYK----NKIHVVDPKSLDVI 115 (121)
Q Consensus 84 ~pV~--~m~~v~~~lw~~~g----n~I~Vi~~~tl~i~ 115 (121)
.... ++.+.++.+++... ..|+++|.++.+.+
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 1222 34445677766554 35999999888754
No 361
>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....
Probab=51.02 E-value=27 Score=28.55 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=24.8
Q ss_pred CeEEEEecCCeEE-EEECCccc-c---e-eeeeEec---CCCEEEEEEeC
Q psy16019 6 PTMWLGSQNGSVF-VHSAVSQW-R---R-CLHSIQL---KDSVLNIVHVQ 46 (121)
Q Consensus 6 ~tvwiGt~~g~I~-v~~~~~~~-~---~-~l~~~~l---~~~V~~i~~~~ 46 (121)
.-+++||++|.|+ +....... . . .+..+++ +.+|..+....
T Consensus 382 tV~flGT~~G~l~K~v~~~~~~~~~~~~~~iee~~~~~~~~pI~~~~l~~ 431 (433)
T PF01403_consen 382 TVAFLGTDDGRLHKKVVLSNSSSGHYESYIIEEIQVFPDSEPIQSMKLSP 431 (433)
T ss_dssp EEEEEEETTSEEEEEEEESSSSTCT-EEEEEEEEE-STSC-EEEEEEEET
T ss_pred EEEEEecCCceEEEEEEecCCCCcccccEEEEEEeecCCCCceEEEEecc
Confidence 4689999999999 55543321 1 1 3344443 24888887654
No 362
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=50.82 E-value=1.4e+02 Score=24.58 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCCeEEEEecCCeEEEEECCc-ccce-eeeeEecC---CCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVS-QWRR-CLHSIQLK---DSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV 77 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~-~~~~-~l~~~~l~---~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i 77 (121)
..+.+|+.++.|.++.-.-.. .+.. ....+..+ ..++++.+. ++.++++..+|.+..- .+.+..|...
T Consensus 290 ~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~tW~~~----- 363 (398)
T PLN00033 290 ADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGKSWKRD----- 363 (398)
T ss_pred CCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCcceeEc-----
Confidence 457899999999987754332 1111 23333333 358888765 6689999999976664 3444456632
Q ss_pred EeCCC-CCceeEeeee-CCEEEEEeCCeEE
Q psy16019 78 TLGLP-HHSVRSLAAV-YNKVWCGYKNKIH 105 (121)
Q Consensus 78 ~lg~~-~~pV~~m~~v-~~~lw~~~gn~I~ 105 (121)
..++. +.+...+... +++.|+.-.+.+.
T Consensus 364 ~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 364 KGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred cccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 22221 4678888855 4888886655543
No 363
>KOG1900|consensus
Probab=50.18 E-value=81 Score=30.13 Aligned_cols=65 Identities=20% Similarity=0.444 Sum_probs=47.2
Q ss_pred CCCCeEEEEecCCeEE--EEECCcccc--eeee-------------eE-ecC----CCEEEEEEe--CCEEEEEecCCcE
Q psy16019 3 SVLPTMWLGSQNGSVF--VHSAVSQWR--RCLH-------------SI-QLK----DSVLNIVHV--QGRVVCALADGSV 58 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~--v~~~~~~~~--~~l~-------------~~-~l~----~~V~~i~~~--~~~v~v~LanG~l 58 (121)
+..+.+++|.+||.|| +|.+.+.|- +|.+ ++ +.| ++|..|.-. .+-+|+=..-|++
T Consensus 187 t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v 266 (1311)
T KOG1900|consen 187 TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTV 266 (1311)
T ss_pred ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceE
Confidence 4556789999999998 688998873 2311 22 444 478777764 4568888889999
Q ss_pred EEEEcCCCC
Q psy16019 59 AIFRRGPDG 67 (121)
Q Consensus 59 ~Vy~r~~~g 67 (121)
.+|.-..+|
T Consensus 267 ~~Y~i~~~G 275 (1311)
T KOG1900|consen 267 SAYDIGGNG 275 (1311)
T ss_pred EEEEccCCC
Confidence 999887766
No 364
>KOG1538|consensus
Probab=50.05 E-value=1e+02 Score=27.98 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=16.8
Q ss_pred CCEEEEEecCCcEEEEEcCC
Q psy16019 46 QGRVVCALADGSVAIFRRGP 65 (121)
Q Consensus 46 ~~~v~v~LanG~l~Vy~r~~ 65 (121)
+.++++|.+||.|-+|.|..
T Consensus 234 GEy~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred CcEEEEccCCCceEEEeecC
Confidence 45789999999999998863
No 365
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=49.52 E-value=98 Score=22.40 Aligned_cols=94 Identities=12% Similarity=0.072 Sum_probs=51.0
Q ss_pred EEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEE-ec--CCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019 9 WLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCA-LA--DGSVAIFRRGPDGQWDLSKYHTVTLGLPH 83 (121)
Q Consensus 9 wiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~-La--nG~l~Vy~r~~~g~wd~~~~~~i~lg~~~ 83 (121)
..|...+.|.+|+... +.+.++. ..++..|.+.+ +.+.+| .+ +|.|-+| |.++.+.+.-...
T Consensus 77 i~g~~~~~v~lyd~~~---~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~w--------d~~~~~~i~~~~~- 143 (194)
T PF08662_consen 77 IYGSMPAKVTLYDVKG---KKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFW--------DVRKKKKISTFEH- 143 (194)
T ss_pred EEccCCcccEEEcCcc---cEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEE--------ECCCCEEeecccc-
Confidence 3455667899999863 3344442 25677788874 344433 33 4778886 6777666544332
Q ss_pred CceeEeeee--CCEEEEEe-------CCeEEEEeCCCCcEEE
Q psy16019 84 HSVRSLAAV--YNKVWCGY-------KNKIHVVDPKSLDVIR 116 (121)
Q Consensus 84 ~pV~~m~~v--~~~lw~~~-------gn~I~Vi~~~tl~i~~ 116 (121)
.-+..+.-. +..+..+. .|.+.|.+. +++...
T Consensus 144 ~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~ 184 (194)
T PF08662_consen 144 SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLY 184 (194)
T ss_pred CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeE
Confidence 223344433 34444332 266677765 344433
No 366
>PHA02790 Kelch-like protein; Provisional
Probab=49.37 E-value=1.5e+02 Score=24.59 Aligned_cols=90 Identities=10% Similarity=0.030 Sum_probs=44.7
Q ss_pred eEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecC---CcEEEEEcCCCCCCCCCCceEEEeCCCCCcee--Eee
Q psy16019 16 SVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALAD---GSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVR--SLA 90 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~Lan---G~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~--~m~ 90 (121)
.++.|+...+.-..+..++.|-.-.+....++++||..+. .++-.|.. ..+.|. .+...+.|.. +++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp-~~n~W~-------~~~~l~~~r~~~~~~ 359 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFH-GDAAWV-------NMPSLLKPRCNPAVA 359 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEEC-CCCeEE-------ECCCCCCCCcccEEE
Confidence 3556665542111233333332224455678899988764 23444432 123342 2222123333 345
Q ss_pred eeCCEEEEEeC-----CeEEEEeCCCCc
Q psy16019 91 AVYNKVWCGYK-----NKIHVVDPKSLD 113 (121)
Q Consensus 91 ~v~~~lw~~~g-----n~I~Vi~~~tl~ 113 (121)
..+++||+--| +.+..+|+++.+
T Consensus 360 ~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 360 SINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred EECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 55788887544 356677776643
No 367
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=49.33 E-value=1.5e+02 Score=24.44 Aligned_cols=76 Identities=8% Similarity=0.104 Sum_probs=46.6
Q ss_pred CCEEEEEE-eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeee-CCEEEEEeCCeEEEEeCCCCc
Q psy16019 37 DSVLNIVH-VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-YNKVWCGYKNKIHVVDPKSLD 113 (121)
Q Consensus 37 ~~V~~i~~-~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~ 113 (121)
..++.+.. .++.++++..+|.+.. .+..+..|...+...+.......++..+... ++++|++-.+.+.......++
T Consensus 281 ~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~ 358 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGK 358 (398)
T ss_pred cceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCc
Confidence 46666654 4668888888888655 3444445654344445444334567777666 578888777665555444433
No 368
>KOG3630|consensus
Probab=48.71 E-value=55 Score=31.11 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=50.9
Q ss_pred ecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC----CCc
Q psy16019 12 SQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP----HHS 85 (121)
Q Consensus 12 t~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~----~~p 85 (121)
..|+.|.|+.+... .+...++++...++|+++. +.++++|-.||++.=|...- .-...+..| ++.
T Consensus 175 l~dlsl~V~~~~~~-~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l--------eik~~ip~Pp~~e~yr 245 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQL-AQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL--------EIKSEIPEPPVEENYR 245 (1405)
T ss_pred ccccchhhhhhhhh-hhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc--------ceeecccCCCcCCCcc
Confidence 34778888877663 3345567777899999986 46999999999999994321 111122222 356
Q ss_pred eeEeeeeCCEEEE
Q psy16019 86 VRSLAAVYNKVWC 98 (121)
Q Consensus 86 V~~m~~v~~~lw~ 98 (121)
|.|++..+.+.|+
T Consensus 246 vl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 246 VLSVTWLSTQEFL 258 (1405)
T ss_pred eeEEEEecceeEE
Confidence 6677666655544
No 369
>KOG1912|consensus
Probab=48.36 E-value=1.3e+02 Score=27.69 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=61.1
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCC-EEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDS-VLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT 78 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~-V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~ 78 (121)
|+=..+++-+|--+|.|.+|+... |+...-...|++ +..++... .=+||+.+|.+.+---.||.+.... ..
T Consensus 634 mAwk~d~lv~GD~~GNl~~WDlg~--R~SRg~~d~p~~ra~~l~~~~-----ipG~~~~lvl~~d~~~lwdtk~~~lV~s 706 (1062)
T KOG1912|consen 634 MAWKDDILVVGDVEGNLVVWDLGR--RQSRGVRDSPDPRAHSLTFPQ-----IPGDHTTLVLELDWLPLWDTKADTLVLS 706 (1062)
T ss_pred hhccCCeeEeecccCceeEEeccc--ccccCccCCCCchhhheeccc-----CCCCceEEEEecCcceecccccceeeee
Confidence 445678999999999999999776 444443345542 11111111 1246788887777666788877655 46
Q ss_pred eCCCCCceeEeeee--C-CEEEEEeCCeEEEE
Q psy16019 79 LGLPHHSVRSLAAV--Y-NKVWCGYKNKIHVV 107 (121)
Q Consensus 79 lg~~~~pV~~m~~v--~-~~lw~~~gn~I~Vi 107 (121)
+......-|++.+. + +.+.....|++.+.
T Consensus 707 iag~dssfrlldvdlc~~~~~~l~~d~~~Rf~ 738 (1062)
T KOG1912|consen 707 IAGMDSSFRLLDVDLCEKSPLVLPNDNKERFR 738 (1062)
T ss_pred eccCCcceEEEEEEecccCceecCCCCceeEE
Confidence 63334677776655 2 55666665554443
No 370
>PHA00653 mtd major tropism determinant
Probab=47.63 E-value=72 Score=26.10 Aligned_cols=59 Identities=10% Similarity=0.078 Sum_probs=47.9
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy 61 (121)
.++.-+-+-|....++|++-...--..|..+.+++.++.+.-..+..|++..+++|.|-
T Consensus 20 ga~~ei~~~t~~~~l~v~Dgtt~gg~~L~kl~~~~~~~~~~~~s~~~~~~tG~~~ltvk 78 (381)
T PHA00653 20 GAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIK 78 (381)
T ss_pred ccceeEEEccCCceEEEecCcccCCceeeccccccceeeeecccceeEEecCCceEEEe
Confidence 45667888888999999997664446788889999998888888888999988888774
No 371
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=47.62 E-value=1.1e+02 Score=25.32 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=41.3
Q ss_pred ecC-CCEEEE-EEeCCEEEEEecCCcEEEEEcCCCCCC-----CCCCceEEEeCC--C-CCceeEeeeeCCEEE-EEeCC
Q psy16019 34 QLK-DSVLNI-VHVQGRVVCALADGSVAIFRRGPDGQW-----DLSKYHTVTLGL--P-HHSVRSLAAVYNKVW-CGYKN 102 (121)
Q Consensus 34 ~l~-~~V~~i-~~~~~~v~v~LanG~l~Vy~r~~~g~w-----d~~~~~~i~lg~--~-~~pV~~m~~v~~~lw-~~~gn 102 (121)
+|. ..+.|= .|.-+.-| ..||+-.+|.-+.+|.| |+++....+|-+ . +..--++..-.+.++ +-.+.
T Consensus 25 rLT~~~~~~h~~YF~~~~f--t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~ 102 (386)
T PF14583_consen 25 RLTPPDGHSHRLYFYQNCF--TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGR 102 (386)
T ss_dssp E-S-TTS-EE---TTS--B---TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTT
T ss_pred EecCCCCcccceeecCCCc--CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCC
Confidence 443 344443 33333444 56777777766666655 666667766644 1 122345555568875 45667
Q ss_pred eEEEEeCCCCcEEEEEEe
Q psy16019 103 KIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 103 ~I~Vi~~~tl~i~~~~~~ 120 (121)
+++-+|.+|++...-+++
T Consensus 103 ~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 103 SLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp EEEEEETTT--EEEEEE-
T ss_pred eEEEEECCcCcEEEEEEC
Confidence 999999999997766654
No 372
>KOG3611|consensus
Probab=47.24 E-value=1.1e+02 Score=27.62 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=37.7
Q ss_pred EEEEEecCCcEEEEEcCCCCCCCCCC--ceEEEeCCCCCceeEeeeeC--CEEEEEeCCeEEEEeC
Q psy16019 48 RVVCALADGSVAIFRRGPDGQWDLSK--YHTVTLGLPHHSVRSLAAVY--NKVWCGYKNKIHVVDP 109 (121)
Q Consensus 48 ~v~v~LanG~l~Vy~r~~~g~wd~~~--~~~i~lg~~~~pV~~m~~v~--~~lw~~~gn~I~Vi~~ 109 (121)
-+|+|..+|+|.=.=...+..+ ..+ ..-+.+=...+||+.|.+.. +.|++|.+..|.=+..
T Consensus 427 VlflGTd~G~vlKvV~~~~~~~-~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV~qvpl 491 (737)
T KOG3611|consen 427 VLFLGTDAGTVLKVVSPGKESG-KSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGVVQVPL 491 (737)
T ss_pred EEEEecCCCeEEEEEecCCccC-ccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcEEEeeh
Confidence 4899999999653322211111 112 11144433348999999985 6799999988766543
No 373
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=47.06 E-value=1.1e+02 Score=22.20 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=56.3
Q ss_pred ecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCCE--EEEEec-CCcEEEEEcCCCCCCCCCCceEE-EeCCCCCce
Q psy16019 12 SQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQGR--VVCALA-DGSVAIFRRGPDGQWDLSKYHTV-TLGLPHHSV 86 (121)
Q Consensus 12 t~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~~--v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i-~lg~~~~pV 86 (121)
..++.+.+|+.... .+....+ ..++.|.++.+.++. ++++.. ||.+.+|+... .+.+ .+.....+|
T Consensus 131 ~~d~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v 201 (466)
T COG2319 131 SLDGTVKLWDLSTP-GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--------GKPLSTLAGHTDPV 201 (466)
T ss_pred CCCccEEEEEecCC-CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--------CceEEeeccCCCce
Confidence 44888999987751 1233444 445788888887543 444543 89999985443 2221 222134788
Q ss_pred eEeeeeC-CE-EEEEeC--CeEEEEeCCCCcEEE
Q psy16019 87 RSLAAVY-NK-VWCGYK--NKIHVVDPKSLDVIR 116 (121)
Q Consensus 87 ~~m~~v~-~~-lw~~~g--n~I~Vi~~~tl~i~~ 116 (121)
.++.... +. +-.+++ +.|.+.|..+.+..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~ 235 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEe
Confidence 8888773 32 444423 567766766555554
No 374
>PLN02153 epithiospecifier protein
Probab=46.87 E-value=1.4e+02 Score=23.31 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=19.3
Q ss_pred EeeeeCCEEEEEeC---------------CeEEEEeCCCCcEE
Q psy16019 88 SLAAVYNKVWCGYK---------------NKIHVVDPKSLDVI 115 (121)
Q Consensus 88 ~m~~v~~~lw~~~g---------------n~I~Vi~~~tl~i~ 115 (121)
+++..++++++-.| +.+.++|+++.+-.
T Consensus 188 ~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 188 GFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred eEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 46667888876322 56889998886544
No 375
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=46.38 E-value=1.4e+02 Score=23.27 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=58.9
Q ss_pred CCeEEEEecCCeEEEEECCcc-c-c-e-eeeeEecC---CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQ-W-R-R-CLHSIQLK---DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV 77 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~-~-~-~-~l~~~~l~---~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i 77 (121)
.+.+++|...+...+++.... . + . .++.+.-+ +++....-.++.+.++-.+..+.| .. .| |.......+
T Consensus 165 ~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~v~V--n~-~G-~~~~r~~~l 240 (302)
T smart00036 165 RPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEFGVFV--NL-YG-KRRSRNPIL 240 (302)
T ss_pred ceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcEEEEE--eC-CC-CccccceEE
Confidence 468999998644555554321 0 0 1 11111111 233222233444555544443222 22 12 222233456
Q ss_pred EeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEEEE
Q psy16019 78 TLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 78 ~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~~ 119 (121)
..+. .| .+++.....|++-..+.|-|.+.+|+++..++.
T Consensus 241 ~w~~--~p-~~~~~~~pyll~~~~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 241 HWEF--MP-ESFAYHSPYLLAFHDNGIEIRSIKTGELLQELA 279 (302)
T ss_pred EcCC--cc-cEEEEECCEEEEEcCCcEEEEECCCCceEEEEe
Confidence 6666 33 467777899998888999999999999887764
No 376
>KOG0292|consensus
Probab=45.97 E-value=2.6e+02 Score=26.27 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=67.2
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEE-----------cCCCCCCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFR-----------RGPDGQWD 70 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~-----------r~~~g~wd 70 (121)
.|.+--|.+|..+-+|-.++.---++.+.+ +...|.|..++. +.+.....|+++-||. |..|.-|=
T Consensus 218 lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~ 297 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWI 297 (1202)
T ss_pred cceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEE
Confidence 466778899998888887763112444543 447899999887 7899999999988864 33444454
Q ss_pred CCCceE--------------EEeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCC
Q psy16019 71 LSKYHT--------------VTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKS 111 (121)
Q Consensus 71 ~~~~~~--------------i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~t 111 (121)
+..+.. +++.. ..| +-+++++.|++--..+|+-+|..|
T Consensus 298 laahP~lNLfAAgHDsGm~VFkleR-Erp--a~~v~~n~LfYvkd~~i~~~d~~t 349 (1202)
T KOG0292|consen 298 LAAHPELNLFAAGHDSGMIVFKLER-ERP--AYAVNGNGLFYVKDRFIRSYDLRT 349 (1202)
T ss_pred EEecCCcceeeeecCCceEEEEEcc-cCc--eEEEcCCEEEEEccceEEeeeccc
Confidence 433211 12221 134 334566777777777788887776
No 377
>KOG2395|consensus
Probab=45.90 E-value=1.5e+02 Score=25.93 Aligned_cols=95 Identities=17% Similarity=0.226 Sum_probs=57.7
Q ss_pred EEEEecCCeEEEEECCcccceeeeeEecC-----CCEEEEEE-eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeC
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLK-----DSVLNIVH-VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLG 80 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~-----~~V~~i~~-~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg 80 (121)
-.+|-.+-+|+=++..-.-+..+.-.+-. ---.|+.. .++++-||.-+|.|-.|.|- +. ..-..+ .||
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri-~~----~AKTAlPgLG 471 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI-GR----RAKTALPGLG 471 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhh-hh----hhhhcccccC
Confidence 35788888888887554222122111111 12223332 36789999999999999772 11 111122 455
Q ss_pred CCCCceeEeeee--CCEEEEEeCCeEEEEeCC
Q psy16019 81 LPHHSVRSLAAV--YNKVWCGYKNKIHVVDPK 110 (121)
Q Consensus 81 ~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~ 110 (121)
+ ||.-+.+. ++-+-|.|.+-+.+|+..
T Consensus 472 ~---~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 472 D---AIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred C---ceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 5 77776655 688999999999998763
No 378
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=45.15 E-value=46 Score=21.52 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=31.3
Q ss_pred EEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecC-CcEEEEEcCC
Q psy16019 10 LGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALAD-GSVAIFRRGP 65 (121)
Q Consensus 10 iGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~Lan-G~l~Vy~r~~ 65 (121)
+|.--|.+.-|+..+ ++.....+..|.- |.+. ++.||||... +.|-||+|..
T Consensus 31 l~~~~~~Vvyyd~~~-~~~va~g~~~aNG---I~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 31 LGLPWGNVVYYDGKE-VKVVASGFSFANG---IAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred hcCCCceEEEEeCCE-eEEeeccCCCCce---EEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 444456666677544 2333333444433 3443 5789998776 7799998865
No 379
>KOG4190|consensus
Probab=44.97 E-value=1.8e+02 Score=25.92 Aligned_cols=107 Identities=15% Similarity=0.207 Sum_probs=69.9
Q ss_pred CeEEEEecCCeEEEEECCcc--cc---eeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQ--WR---RCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T 78 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~--~~---~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~ 78 (121)
+..--++.|..+-+|+.... .+ .|..+.+ +..+|.+|-+..+.-+++.-||-+-+|..-.+. .+ .
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr--------~Laq 819 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGR--------LLAQ 819 (1034)
T ss_pred cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccc--------hhHh
Confidence 34444566777777775542 11 2566664 447899999988878999999999998443221 11 0
Q ss_pred eCC-C----CCceeEeeeeCCE-EEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019 79 LGL-P----HHSVRSLAAVYNK-VWCGYK--NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 79 lg~-~----~~pV~~m~~v~~~-lw~~~g--n~I~Vi~~~tl~i~~~~~~ 120 (121)
+-+ | ..-|+|+.-+... |-+||. ..|..+|+.+.+-...+.|
T Consensus 820 ~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 820 MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 111 1 2467888777654 566777 6899999999887666554
No 380
>KOG1524|consensus
Probab=44.70 E-value=2.2e+02 Score=25.12 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=17.0
Q ss_pred CCCeEEEEecCCeEEEEECCcccc
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWR 27 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~ 27 (121)
.+.-+....|||-|-+|+-..+.|
T Consensus 115 dGtgLlt~GEDG~iKiWSrsGMLR 138 (737)
T KOG1524|consen 115 DGAGLLTAGEDGVIKIWSRSGMLR 138 (737)
T ss_pred CCceeeeecCCceEEEEeccchHH
Confidence 344566677899999999666544
No 381
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=44.46 E-value=66 Score=24.53 Aligned_cols=26 Identities=8% Similarity=0.058 Sum_probs=20.0
Q ss_pred EEEEEEeC-CEEEEEecCCcEEEEEcC
Q psy16019 39 VLNIVHVQ-GRVVCALADGSVAIFRRG 64 (121)
Q Consensus 39 V~~i~~~~-~~v~v~LanG~l~Vy~r~ 64 (121)
..++...+ +.+|+|++...|-||.-.
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~ 46 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLE 46 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcc
Confidence 34555556 899999999999999543
No 382
>KOG3617|consensus
Probab=44.23 E-value=50 Score=30.67 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=31.3
Q ss_pred eeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCC
Q psy16019 30 LHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDG 67 (121)
Q Consensus 30 l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g 67 (121)
+-.+.+.+.++|++|. +.++++|...|++++|.+..+|
T Consensus 297 Kyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~ 336 (1416)
T KOG3617|consen 297 KYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKG 336 (1416)
T ss_pred chhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCcc
Confidence 3445566799999997 5689999999999999998765
No 383
>PLN02153 epithiospecifier protein
Probab=43.69 E-value=1.5e+02 Score=23.01 Aligned_cols=28 Identities=18% Similarity=-0.084 Sum_probs=19.1
Q ss_pred eEeeeeCCEEEEEeC----------------CeEEEEeCCCCcE
Q psy16019 87 RSLAAVYNKVWCGYK----------------NKIHVVDPKSLDV 114 (121)
Q Consensus 87 ~~m~~v~~~lw~~~g----------------n~I~Vi~~~tl~i 114 (121)
.++..++++|++-.| |.++++|+++.+-
T Consensus 245 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 245 FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence 345566778777544 4789999887654
No 384
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=42.07 E-value=81 Score=19.33 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEEEeCC-EEEEEecCCcEEEEEcC
Q psy16019 39 VLNIVHVQG-RVVCALADGSVAIFRRG 64 (121)
Q Consensus 39 V~~i~~~~~-~v~v~LanG~l~Vy~r~ 64 (121)
|.+..+.++ ++++-.+||...+|+-.
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~~~~dl~ 27 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGETRIFDLS 27 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEECC
T ss_pred CeEEEEcCCcEEEEEEcCCCEEEEEhH
Confidence 456777777 99999999999999554
No 385
>KOG0642|consensus
Probab=41.54 E-value=46 Score=28.89 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=43.2
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCC--EEEEEecCCcEEEE
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQG--RVVCALADGSVAIF 61 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~--~v~v~LanG~l~Vy 61 (121)
.++..+.+.|++.|-+|+... -+.++++ ..+++|++|....| ++-.+..||.+..+
T Consensus 500 ~~~~~~~~hed~~Ir~~dn~~--~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~ 558 (577)
T KOG0642|consen 500 TADITFTAHEDRSIRFFDNKT--GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLW 558 (577)
T ss_pred CCCeeEecccCCceecccccc--cccchheeeccceecceeecCCCceEEeecCCceeehh
Confidence 357788899999999998776 3667776 56799999998866 45556677887765
No 386
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=40.16 E-value=1.8e+02 Score=22.86 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=53.7
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeE-ec--C--CCEEEEEEeC-----CEEEEEecCC---------cEEEEEcCCC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSI-QL--K--DSVLNIVHVQ-----GRVVCALADG---------SVAIFRRGPD 66 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l--~--~~V~~i~~~~-----~~v~v~LanG---------~l~Vy~r~~~ 66 (121)
+.|++..+.|.|+++......+..+..+ ++ . .-.+.|..+. +.+|++-..- .|.-|....+
T Consensus 13 G~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~ 92 (331)
T PF07995_consen 13 GRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDG 92 (331)
T ss_dssp SCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETT
T ss_pred CcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCC
Confidence 6899999999999999444322233333 11 1 3678899887 6889888832 3444444332
Q ss_pred CCCCCCCceEEEeC-----CCCCceeEeeee-CCEEEEEeC
Q psy16019 67 GQWDLSKYHTVTLG-----LPHHSVRSLAAV-YNKVWCGYK 101 (121)
Q Consensus 67 g~wd~~~~~~i~lg-----~~~~pV~~m~~v-~~~lw~~~g 101 (121)
.-++.+.+.|-.+ ...+.-+.|..- ++.||++.|
T Consensus 93 -~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 93 -DGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp -SCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred -ccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 1123334443211 124666777777 489999877
No 387
>KOG1523|consensus
Probab=39.82 E-value=2.1e+02 Score=23.44 Aligned_cols=103 Identities=15% Similarity=0.233 Sum_probs=63.4
Q ss_pred CCCCeEEEEecCCeEEEEECC-c-ccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAV-S-QWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT 78 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~-~-~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~ 78 (121)
+..|.+--+.+|..-|||... + .||+.+--+++..+++|++.. +|+.-||.+--.+.|.--..+..|=+..+
T Consensus 65 p~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKh---- 140 (361)
T KOG1523|consen 65 PKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKH---- 140 (361)
T ss_pred CCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhh----
Confidence 345677788888999999873 3 366667777888999999986 55666666665666654444444532222
Q ss_pred eCCC-CCceeEeeeeCCE--EEEEeC-CeEEEEeC
Q psy16019 79 LGLP-HHSVRSLAAVYNK--VWCGYK-NKIHVVDP 109 (121)
Q Consensus 79 lg~~-~~pV~~m~~v~~~--lw~~~g-n~I~Vi~~ 109 (121)
+.-| ...|.|+.-..+. |.+|+- .+.+||.+
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence 2222 2456666655433 344443 46677654
No 388
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=38.89 E-value=1.8e+02 Score=22.40 Aligned_cols=69 Identities=9% Similarity=-0.006 Sum_probs=35.8
Q ss_pred EEEEEeCCEEEEEecC------CcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeCCEEEEEeC------CeEEEE
Q psy16019 40 LNIVHVQGRVVCALAD------GSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK------NKIHVV 107 (121)
Q Consensus 40 ~~i~~~~~~v~v~Lan------G~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~~~lw~~~g------n~I~Vi 107 (121)
.+....++++||..+. ..+-+|+.. ...|..-+ ++..+...-.++...+++||+--| +.+.++
T Consensus 117 ~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~-~~~W~~~~----~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~y 191 (323)
T TIGR03548 117 GSACYKDGTLYVGGGNRNGKPSNKSYLFNLE-TQEWFELP----DFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKY 191 (323)
T ss_pred ceEEEECCEEEEEeCcCCCccCceEEEEcCC-CCCeeECC----CCCCCCCCcceEEEECCEEEEEcCCCCccccceEEE
Confidence 3455668888887653 245566433 23453211 111100111134566888888554 246788
Q ss_pred eCCCCc
Q psy16019 108 DPKSLD 113 (121)
Q Consensus 108 ~~~tl~ 113 (121)
|+++.+
T Consensus 192 d~~~~~ 197 (323)
T TIGR03548 192 SPKKNQ 197 (323)
T ss_pred ecCCCe
Confidence 887754
No 389
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=38.83 E-value=98 Score=19.32 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=40.1
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCCEEEEEecC---CcEEEE
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQGRVVCALAD---GSVAIF 61 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~~v~v~Lan---G~l~Vy 61 (121)
.....+|+|-...+|.||.-.... . ....+ ..|..|.|.+....+-+.+ +....|
T Consensus 2 ~~~~~~~LGv~~~GI~i~~~~~~~--~--~~~f~W~~I~~l~~~~k~F~I~~~~~~~~~~~~f 60 (90)
T PF09380_consen 2 KNGSPLWLGVSPRGISIYRDNNRI--S--TQFFPWSEISKLSFKKKKFTIEVRDESKEIKLKF 60 (90)
T ss_dssp TTSBEEEEEEESSEEEEEETTBSS--S--SEEEEGGGEEEEEEETTEEEEEESSTSSSEEEEE
T ss_pred CCCCEEEEEEcCCEeEEEeCCCcc--c--ceeeehhheeEEEecccEEEEEEeecccceEEEE
Confidence 356689999999999999655521 1 22444 6788999999999988864 555555
No 390
>KOG4283|consensus
Probab=38.72 E-value=1.6e+02 Score=24.08 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=45.1
Q ss_pred CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC---EEEEEecCCcEEEEEc
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG---RVVCALADGSVAIFRR 63 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~---~v~v~LanG~l~Vy~r 63 (121)
+..-.+-.||.+-.|.+-+..+ -.+-|++. +.+.|+....... -++.|.+||.+-.|.-
T Consensus 156 ~sHcLiA~gtr~~~VrLCDi~S--Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDi 218 (397)
T KOG4283|consen 156 MSHCLIAAGTRDVQVRLCDIAS--GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDI 218 (397)
T ss_pred hcceEEEEecCCCcEEEEeccC--CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEe
Confidence 3344678899999999988777 35677775 6689999988643 4777999999988753
No 391
>KOG0918|consensus
Probab=38.68 E-value=98 Score=26.14 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=52.0
Q ss_pred eEEEEECCcccceeeeeEecCC---CEEEEEEe----CCEEEEEecCCc-EEEEEcCCCCCCCCCCceE---EEeCC---
Q psy16019 16 SVFVHSAVSQWRRCLHSIQLKD---SVLNIVHV----QGRVVCALADGS-VAIFRRGPDGQWDLSKYHT---VTLGL--- 81 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~~l~~---~V~~i~~~----~~~v~v~LanG~-l~Vy~r~~~g~wd~~~~~~---i~lg~--- 81 (121)
++++|.-.. .+-.++++|.+ .+++|++. .+.-||+.|-|. +.=|..+++..|..+--.- .++..
T Consensus 230 ~lhvy~w~~--~~~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~kv~~w~~ 307 (476)
T KOG0918|consen 230 HLHVYQWSP--GELKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLKVENWIL 307 (476)
T ss_pred eeEEEecCC--ccceeEEecCCCCcceEEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEecCccccccccC
Confidence 577887665 46678888874 78888864 567888877765 4445555667675332111 11111
Q ss_pred C--CCceeEeeee--CCEEEEEeC--CeEEEEe
Q psy16019 82 P--HHSVRSLAAV--YNKVWCGYK--NKIHVVD 108 (121)
Q Consensus 82 ~--~~pV~~m~~v--~~~lw~~~g--n~I~Vi~ 108 (121)
| +.=|+-|++. ...||++|- ..|.=+|
T Consensus 308 ~eMP~LITDilISmDDRFLYvs~WLHGDirQYd 340 (476)
T KOG0918|consen 308 PEMPGLITDILISLDDRFLYVSNWLHGDIRQYD 340 (476)
T ss_pred cccchhhheeEEeecCcEEEEEeeeecceeeec
Confidence 1 2335555555 355677665 3444443
No 392
>PRK04043 tolB translocation protein TolB; Provisional
Probab=38.65 E-value=2.2e+02 Score=23.34 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=21.5
Q ss_pred EeeeeCCEEEEEeC----CeEEEEeCCCCcEEE
Q psy16019 88 SLAAVYNKVWCGYK----NKIHVVDPKSLDVIR 116 (121)
Q Consensus 88 ~m~~v~~~lw~~~g----n~I~Vi~~~tl~i~~ 116 (121)
...+.+++|+..+. .+|+++|.++.+.++
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 34555678877664 389999999988865
No 393
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=38.07 E-value=2.1e+02 Score=22.81 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=26.7
Q ss_pred CCCeEEE--EecCCeEEEEECCcc---cceeeeeEec-CCCEEEEEEeCCEEEEEecC
Q psy16019 4 VLPTMWL--GSQNGSVFVHSAVSQ---WRRCLHSIQL-KDSVLNIVHVQGRVVCALAD 55 (121)
Q Consensus 4 ~~~tvwi--Gt~~g~I~v~~~~~~---~~~~l~~~~l-~~~V~~i~~~~~~v~v~Lan 55 (121)
..+.|++ |..+...++|+.... |. .+..+.. |-.-.+....++++||-.+.
T Consensus 37 ~~~~iyv~gG~~~~~~~~~d~~~~~~~W~-~l~~~p~~~r~~~~~v~~~~~IYV~GG~ 93 (376)
T PRK14131 37 DNNTVYVGLGSAGTSWYKLDLNAPSKGWT-KIAAFPGGPREQAVAAFIDGKLYVFGGI 93 (376)
T ss_pred ECCEEEEEeCCCCCeEEEEECCCCCCCeE-ECCcCCCCCcccceEEEECCEEEEEcCC
Confidence 3567777 333456778887531 22 1222221 22233455667888886653
No 394
>PRK03629 tolB translocation protein TolB; Provisional
Probab=37.78 E-value=2.2e+02 Score=23.14 Aligned_cols=25 Identities=8% Similarity=-0.101 Sum_probs=16.6
Q ss_pred eCCEEEEEeC----CeEEEEeCCCCcEEE
Q psy16019 92 VYNKVWCGYK----NKIHVVDPKSLDVIR 116 (121)
Q Consensus 92 v~~~lw~~~g----n~I~Vi~~~tl~i~~ 116 (121)
.++.|.+... .+|+++|..+.+.++
T Consensus 297 DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~ 325 (429)
T PRK03629 297 DSQNLAYTSDQAGRPQVYKVNINGGAPQR 325 (429)
T ss_pred CCCEEEEEeCCCCCceEEEEECCCCCeEE
Confidence 3566765543 378888888876643
No 395
>KOG0974|consensus
Probab=37.31 E-value=2.2e+02 Score=26.46 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=64.3
Q ss_pred CCCeEEEEecCCeEEEEECCcccceee--eeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE--Ee
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCL--HSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV--TL 79 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l--~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i--~l 79 (121)
....+..-++|..|.+|...+ .+.+ .-+.+++.|.+++..+++++.+..|=+.-||+ ..+..|. .+ ..
T Consensus 186 dg~~i~s~SdDRsiRlW~i~s--~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~-~~~~~l~-----~y~~h~ 257 (967)
T KOG0974|consen 186 DGRYIASVSDDRSIRLWPIDS--REVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWG-VNGTQLE-----VYDEHS 257 (967)
T ss_pred CCcEEEEEecCcceeeeeccc--ccccCcccccccceeEEEEeccceeEEeccceEEEEEe-cccceeh-----hhhhhh
Confidence 344566777888888888877 3433 34678899999999999999999999999982 2222222 21 12
Q ss_pred CCCCCceeEeeeeCCEEEE-EeC--CeEEEEeCCCCcEEEE
Q psy16019 80 GLPHHSVRSLAAVYNKVWC-GYK--NKIHVVDPKSLDVIRP 117 (121)
Q Consensus 80 g~~~~pV~~m~~v~~~lw~-~~g--n~I~Vi~~~tl~i~~~ 117 (121)
+ ..|..++...+..|. .-| ..+.+.+..+...+..
T Consensus 258 g---~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 258 G---KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred h---cceeEEEEcCCceEEEeeccCcchhhhhhhccccccc
Confidence 2 355555555444333 333 3566665555544443
No 396
>KOG1896|consensus
Probab=36.50 E-value=2.7e+02 Score=26.86 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=61.9
Q ss_pred ecCCeEEEEECCcccc-eeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEee
Q psy16019 12 SQNGSVFVHSAVSQWR-RCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLA 90 (121)
Q Consensus 12 t~~g~I~v~~~~~~~~-~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~ 90 (121)
++..+|+||+..+... -.+.=+.+|--|.+++..+|.+++|-.--.+..++ |+-+++++.-++....|..++.
T Consensus 1113 ~~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~------fqeep~rlsL~srd~~~l~v~s 1186 (1366)
T KOG1896|consen 1113 SQGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLG------FQEEPYRLSLLSRDFEPLNVYS 1186 (1366)
T ss_pred ccCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEE------EccCceEEEEeecCCchhhcee
Confidence 3457999999844211 23444578889999999999999999888887773 4544555555555456666654
Q ss_pred ----eeCCEEEEEeC----C-eEEEEeCCC
Q psy16019 91 ----AVYNKVWCGYK----N-KIHVVDPKS 111 (121)
Q Consensus 91 ----~v~~~lw~~~g----n-~I~Vi~~~t 111 (121)
+.++.|...+. | +++.+.|+.
T Consensus 1187 ~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1187 TEFLVDGSNLSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred eeeEEcCCeeEEEEEcCCCcEEEEEeCCCC
Confidence 33788876554 3 355555543
No 397
>KOG4379|consensus
Probab=36.49 E-value=1.6e+02 Score=25.37 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=43.6
Q ss_pred EeCCEEEEEecCCc--EEEEEcCCCCCCCCCCc-----------eEEEeCCCCCceeEeeeeCCEEEEEeCCeEEEEeC
Q psy16019 44 HVQGRVVCALADGS--VAIFRRGPDGQWDLSKY-----------HTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDP 109 (121)
Q Consensus 44 ~~~~~v~v~LanG~--l~Vy~r~~~g~wd~~~~-----------~~i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~ 109 (121)
+.+|.=|||+-+|. |.||+-.....-++-+. +.|..+.-..||+-+...++.|.+.....++++..
T Consensus 516 CsPn~syaaice~~rrVlvYsqpa~~S~~l~nRk~g~~V~~v~kq~i~~~e~~DpIlGiq~tn~~lfvlTkk~l~~~~v 594 (596)
T KOG4379|consen 516 CSPNLSYAAICEPVRRVLVYSQPANNSADLLNRKNGPPVTLVKKQLITLGEEIDPILGIQTTNNLLFVLTKKELIHLQV 594 (596)
T ss_pred eCCCcceeeeeccceEEEEEeccCCccchhhccccCCccchhhhhhhhhccccCceeeeEeccceEEEeecccEEEEEe
Confidence 34666777776654 77785443222222211 22555555689999999999999999988888754
No 398
>KOG4283|consensus
Probab=36.22 E-value=2.4e+02 Score=23.07 Aligned_cols=107 Identities=13% Similarity=0.237 Sum_probs=63.8
Q ss_pred CCCeEEEEecCCeEEEEECCcccc----------eeeeeEecCC----CEEEEEE--eCCEEEEEec-CCcEEEEEcCCC
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWR----------RCLHSIQLKD----SVLNIVH--VQGRVVCALA-DGSVAIFRRGPD 66 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~----------~~l~~~~l~~----~V~~i~~--~~~~v~v~La-nG~l~Vy~r~~~ 66 (121)
....|.-|.-||.|-||++..... +|.-.-++|+ +|.+... ++.-+|...+ |-+|-||
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVW----- 129 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVW----- 129 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEe-----
Confidence 345688899999999999766431 1221223442 5666554 3556666544 6777775
Q ss_pred CCCCCCCceE-EEeCCCCCcee--Eeeee---CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019 67 GQWDLSKYHT-VTLGLPHHSVR--SLAAV---YNKVWCGYK-NKIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 67 g~wd~~~~~~-i~lg~~~~pV~--~m~~v---~~~lw~~~g-n~I~Vi~~~tl~i~~~~~ 119 (121)
|++..+. ..+--+ .-|- .|.++ .--+.+|++ .+|..-|..++..-|.+.
T Consensus 130 ---DtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 130 ---DTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred ---ecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence 7766544 222222 1121 13333 233566777 689999999988887763
No 399
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=36.03 E-value=69 Score=25.59 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=11.3
Q ss_pred CCEEEEEecCCcEEEEEcCCC
Q psy16019 46 QGRVVCALADGSVAIFRRGPD 66 (121)
Q Consensus 46 ~~~v~v~LanG~l~Vy~r~~~ 66 (121)
++.=.|-|+||.|.||.|.++
T Consensus 130 KDiRlveL~DG~IGVfTRPqg 150 (298)
T PF08950_consen 130 KDIRLVELADGRIGVFTRPQG 150 (298)
T ss_dssp ---EEEE-TTS-EEEEE----
T ss_pred ceeEEEEecCCeEEEEeCcCC
Confidence 456689999999999999764
No 400
>KOG3616|consensus
Probab=35.63 E-value=75 Score=29.35 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGP 65 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~ 65 (121)
.-++-+|.+||+|.+|+........+.....|.- .+.+.+--++++.+|-...-|.++.
T Consensus 26 ~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~--nlv~tnhgl~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 26 GQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKE--NLVFTNHGLVTATSDRRALAWKEDG 84 (1636)
T ss_pred CceEEEEecCCcEEEEeecccchhhhhhhcCCcc--ceeeeccceEEEeccchhheeeccC
Confidence 3478899999999999977632223555555632 3344444588899998888887764
No 401
>PF06565 DUF1126: Repeat of unknown function (DUF1126); InterPro: IPR010554 This group contains several eukaryote specific repeats of around 35 residues in length. The function of this family is unknown.; PDB: 2Z14_A 2Z13_A.
Probab=35.60 E-value=24 Score=18.80 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=10.1
Q ss_pred EEEecCCcEEEEEcC
Q psy16019 50 VCALADGSVAIFRRG 64 (121)
Q Consensus 50 ~v~LanG~l~Vy~r~ 64 (121)
.-=|+|+++.||+..
T Consensus 3 ~y~L~DdTi~I~E~~ 17 (33)
T PF06565_consen 3 SYYLADDTISIFEPP 17 (33)
T ss_dssp EEETTTTEEEEE---
T ss_pred EEEccCCCEEEEEec
Confidence 445899999999864
No 402
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=35.41 E-value=2.1e+02 Score=22.03 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=51.9
Q ss_pred CCCeEEEEe-cCCeEEEEECCcccceeeeeEecC--CCEEEEEEeCCEEEEEec--CCcEEEEEcCCCCC-CCCCCceEE
Q psy16019 4 VLPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQGRVVCALA--DGSVAIFRRGPDGQ-WDLSKYHTV 77 (121)
Q Consensus 4 ~~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~~~~v~v~La--nG~l~Vy~r~~~g~-wd~~~~~~i 77 (121)
..+++|.=+ +.+.|+.++... +.+.++++. +=.-.|.|.++..||-.. ++.|.+|+-..++. -+......+
T Consensus 32 d~~tLfaV~d~~~~i~els~~G---~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~ 108 (248)
T PF06977_consen 32 DTGTLFAVQDEPGEIYELSLDG---KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKI 108 (248)
T ss_dssp TTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEE
T ss_pred CCCeEEEEECCCCEEEEEcCCC---CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEE
Confidence 456777666 577888888754 567888887 356678898877777666 79999998754331 111112334
Q ss_pred EeCCC---CCceeEeeee--CCEEEEEeC
Q psy16019 78 TLGLP---HHSVRSLAAV--YNKVWCGYK 101 (121)
Q Consensus 78 ~lg~~---~~pV~~m~~v--~~~lw~~~g 101 (121)
+++.+ +.-+--++.. +++|+++..
T Consensus 109 ~l~~~~~~N~G~EGla~D~~~~~L~v~kE 137 (248)
T PF06977_consen 109 SLGFPNKGNKGFEGLAYDPKTNRLFVAKE 137 (248)
T ss_dssp E---S---SS--EEEEEETTTTEEEEEEE
T ss_pred ecccccCCCcceEEEEEcCCCCEEEEEeC
Confidence 55442 2334445544 466666655
No 403
>KOG1007|consensus
Probab=34.99 E-value=2.5e+02 Score=22.89 Aligned_cols=94 Identities=13% Similarity=0.197 Sum_probs=0.0
Q ss_pred EEEecCCeEEEEECCcccceeeeeEecCCCEE-EEE--------EeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019 9 WLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVL-NIV--------HVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT 78 (121)
Q Consensus 9 wiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~-~i~--------~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~ 78 (121)
.+...+..|.+++..+. ++....+..+.+-- ... |+++.-++.+.|+++--| |+...+- .+
T Consensus 138 lasm~dn~i~l~~l~es-s~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~--------D~RT~~~~~s 208 (370)
T KOG1007|consen 138 LASMDDNNIVLWSLDES-SKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFW--------DLRTMKKNNS 208 (370)
T ss_pred eEEeccCceEEEEcccC-cchheeecccccccccceecccccCCCCccceEEEeCCCcEEEE--------Eccchhhhcc
Q ss_pred eCCC-CCceeEeeeeC--CEEEEEeC--CeEEEEeCCC
Q psy16019 79 LGLP-HHSVRSLAAVY--NKVWCGYK--NKIHVVDPKS 111 (121)
Q Consensus 79 lg~~-~~pV~~m~~v~--~~lw~~~g--n~I~Vi~~~t 111 (121)
+.+. .+-||.|-.+. ..+-+.|| ..|++-|+..
T Consensus 209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
No 404
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. This family also includes formyltetrahydrofolate dehydrogenases, which produce formate from formyl-tetrahydrofolate. These enzymes contain an N-terminal domain in common with other formyl transferase enzymes (IPR002376 from INTERPRO). The C-terminal domain has an open beta-barrel fold [].; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3RFO_D 1Z7E_C 2BLN_A 1YRW_A 1FMT_A 2FMT_B 3Q0I_A 3R8X_A 3TQQ_A 2BW0_A ....
Probab=34.76 E-value=76 Score=19.97 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=31.5
Q ss_pred CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcC
Q psy16019 6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRG 64 (121)
Q Consensus 6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~ 64 (121)
|-.|.=-++..|.|+.+.-.... .....|+.|+ ...++.++|+++||.|.|-+-.
T Consensus 29 pga~~~~~~~~i~i~~~~~~~~~--~~~~~pG~i~--~~~~~~l~V~~~dg~l~i~~~q 83 (100)
T PF02911_consen 29 PGAFTTFNGKRIKILKAEPLEDD--SSSNPPGTIV--YIDKNGLLVACGDGALRIRELQ 83 (100)
T ss_dssp T-EEEEETTEEEEEEEEEEEETT--SSSSSTTBEE--EEETTEEEEETSBSEEEEEEEE
T ss_pred CCEEEeeCCeEEEEEeeeecccc--cccccCceEE--EEcCCEEEEEECCcEEEEEEEE
Confidence 33444336667777775431111 1111166543 3356689999999999997543
No 405
>PRK02888 nitrous-oxide reductase; Validated
Probab=34.27 E-value=2.3e+02 Score=25.10 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=52.0
Q ss_pred eEEEEecCCeEEEEECCcccceeeeeEe--cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCC
Q psy16019 7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQ--LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHH 84 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~--l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~ 84 (121)
-.|-|.++|.+.||.+.+ .+.+.+|. .|++=+-. |+.|-+..|......| ..+.-||.++
T Consensus 68 ~f~SgG~sG~~~v~G~PS--mr~l~~ipvf~~~~~~G~---------G~~~esk~~l~~~~~~-------~~~~~gD~HH 129 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPS--MRELMRIPVFNRDSATGW---------GITNESKKVLGEGARG-------GKYLNGDTHH 129 (635)
T ss_pred EEeeCCccceEEEEecCC--cceEEEeeeecCCCCccc---------CCchhHHHHhhccccC-------CcccCCCcCC
Confidence 358899999999999988 45566542 22221111 1122222221100000 1233455455
Q ss_pred ceeEee---eeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019 85 SVRSLA---AVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 85 pV~~m~---~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~ 120 (121)
|=.++. ..+.-||+--. .+|-.|++++++..+-+|+
T Consensus 130 p~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~i 170 (635)
T PRK02888 130 PHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITEL 170 (635)
T ss_pred CcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeC
Confidence 533333 22466777665 4899999999988776654
No 406
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=34.03 E-value=91 Score=24.56 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCCCCCCCCceEEEeCCCCCcee--EeeeeCCEEEEEeCCeEEEEeCCCCc
Q psy16019 55 DGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVR--SLAAVYNKVWCGYKNKIHVVDPKSLD 113 (121)
Q Consensus 55 nG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~--~m~~v~~~lw~~~gn~I~Vi~~~tl~ 113 (121)
.|.+.|| |++..+...+..+..++. ...+.++.+.+..+|+|++.+..+.+
T Consensus 22 ~~~y~i~--------d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 22 KGDYYIY--------DIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEE--------ETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred ceeEEEE--------ecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC
Confidence 4567777 666666666655322333 34455799999999999999987773
No 407
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=34.01 E-value=48 Score=21.73 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=13.8
Q ss_pred eEEEEeCCCCcEEEEEE
Q psy16019 103 KIHVVDPKSLDVIRPVT 119 (121)
Q Consensus 103 ~I~Vi~~~tl~i~~~~~ 119 (121)
-|.|+|.+|+++.|.+.
T Consensus 69 vVkViD~~T~eVIRqIP 85 (107)
T PF03646_consen 69 VVKVIDKETGEVIRQIP 85 (107)
T ss_dssp EEEEEETTT-SEEEEE-
T ss_pred EEEEEECCCCcEEEeCC
Confidence 58999999999999875
No 408
>PRK05137 tolB translocation protein TolB; Provisional
Probab=33.56 E-value=2.6e+02 Score=22.62 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=44.8
Q ss_pred eEEEEECCcccceeeeeE-ecCCCEEEEEEeCC---EEEEEecCC--cEEEEEcCCCCCCCCCCceEEEeCCCCCceeEe
Q psy16019 16 SVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQG---RVVCALADG--SVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSL 89 (121)
Q Consensus 16 ~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~---~v~v~LanG--~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m 89 (121)
.|++++.... ..+.+ .....+.+..+..+ -+|+.-.+| .|.++ |+.......+.....++...
T Consensus 183 ~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~--------dl~~g~~~~l~~~~g~~~~~ 251 (435)
T PRK05137 183 RLAIMDQDGA---NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLL--------DLETGQRELVGNFPGMTFAP 251 (435)
T ss_pred EEEEECCCCC---CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEE--------ECCCCcEEEeecCCCcccCc
Confidence 6777765442 12222 22346666666532 245544333 34444 44333222332222333333
Q ss_pred --eeeCCEEEEEeC----CeEEEEeCCCCcEEE
Q psy16019 90 --AAVYNKVWCGYK----NKIHVVDPKSLDVIR 116 (121)
Q Consensus 90 --~~v~~~lw~~~g----n~I~Vi~~~tl~i~~ 116 (121)
.+.+++|.+... ..|+++|.++.+..+
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR 284 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCceEE
Confidence 334677765543 469999998887643
No 409
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=32.85 E-value=51 Score=25.70 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=17.1
Q ss_pred EeCCeEEEEeCCCCcEEEEEEe
Q psy16019 99 GYKNKIHVVDPKSLDVIRPVTI 120 (121)
Q Consensus 99 ~~gn~I~Vi~~~tl~i~~~~~~ 120 (121)
-|++++.+||..|.++.++++.
T Consensus 31 ~~~pKLv~~Dl~t~~li~~~~~ 52 (287)
T PF03022_consen 31 VCPPKLVAFDLKTNQLIRRYPF 52 (287)
T ss_dssp TS--EEEEEETTTTCEEEEEE-
T ss_pred CCCcEEEEEECCCCcEEEEEEC
Confidence 4678999999999999998864
No 410
>KOG0145|consensus
Probab=32.27 E-value=58 Score=26.01 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=29.7
Q ss_pred eEEEEECCcccc-eeeeeEecC-CCEEEEEEe--------CCEEEEEecC
Q psy16019 16 SVFVHSAVSQWR-RCLHSIQLK-DSVLNIVHV--------QGRVVCALAD 55 (121)
Q Consensus 16 ~I~v~~~~~~~~-~~l~~~~l~-~~V~~i~~~--------~~~v~v~Lan 55 (121)
+|+||++....- ..+|.+.=| .+|+..+.. .++-||...|
T Consensus 280 ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtN 329 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 329 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecc
Confidence 899999765433 368988888 888888754 4567777766
No 411
>KOG2394|consensus
Probab=32.18 E-value=1.6e+02 Score=25.88 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=41.2
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEc
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRR 63 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r 63 (121)
...-|-.=+|||.|-||+... .+.+..++-= +.-+|..+.. .++.+|..|-.|.||+-
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt--~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDT--QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred CCceEEEEecCceEEEeeccH--HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 344555667999999999887 2323333322 6889999874 47888999999999853
No 412
>KOG4328|consensus
Probab=31.77 E-value=3.3e+02 Score=23.33 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=63.1
Q ss_pred EEEEecCCeEEEEECCcccce-e--eeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019 8 MWLGSQNGSVFVHSAVSQWRR-C--LHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP 82 (121)
Q Consensus 8 vwiGt~~g~I~v~~~~~~~~~-~--l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~ 82 (121)
+-.++.|+..-||++..--.| . +.++.+.-+|-+-.|. .+.+..-.+|..|-||+-.--+.|| ++..+|.=..-
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~-~p~~~I~Hn~~ 416 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD-EPLGTIPHNNR 416 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC-CccceeeccCc
Confidence 445678999999998874333 2 5666666788777775 4578888999999999664333444 22222321110
Q ss_pred ----CCceeEee-eeCCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019 83 ----HHSVRSLA-AVYNKVWCGYK-NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 83 ----~~pV~~m~-~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~ 118 (121)
-.|...+= +..+-+..|.= ..|=|||++..+...+|
T Consensus 417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el 458 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL 458 (498)
T ss_pred ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence 11221111 11122333332 46888888887755543
No 413
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=31.71 E-value=73 Score=15.72 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=8.6
Q ss_pred EeCCeEEEEeCCCCcEE
Q psy16019 99 GYKNKIHVVDPKSLDVI 115 (121)
Q Consensus 99 ~~gn~I~Vi~~~tl~i~ 115 (121)
...++|+|-|..+..++
T Consensus 10 ~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 10 DSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp ETTSEEEEEECCCTEEE
T ss_pred eCCCCEEEEECCCCEEE
Confidence 33455555555555444
No 414
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=31.58 E-value=1.5e+02 Score=19.37 Aligned_cols=10 Identities=0% Similarity=0.039 Sum_probs=5.4
Q ss_pred CCeEEEEECC
Q psy16019 14 NGSVFVHSAV 23 (121)
Q Consensus 14 ~g~I~v~~~~ 23 (121)
+|.+.+|...
T Consensus 30 dgnlv~~~~~ 39 (116)
T cd00028 30 DYNLILYKGS 39 (116)
T ss_pred eEEEEEEeCC
Confidence 5555556533
No 415
>KOG3914|consensus
Probab=31.12 E-value=2.8e+02 Score=23.14 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=50.3
Q ss_pred CCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeCCCCCceeEeeeeCCE-EEEEeC-CeEEEEeC
Q psy16019 37 DSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAVYNK-VWCGYK-NKIHVVDP 109 (121)
Q Consensus 37 ~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v~~~-lw~~~g-n~I~Vi~~ 109 (121)
+.++++...++ .+.-|--|+.|-|-+ ...+.. +.+|.- +=|..|.+..+. ||=|.| +++++-|-
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~--------ypa~f~IesfclGH~-eFVS~isl~~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSR--------YPATFVIESFCLGHK-EFVSTISLTDNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEe--------cCcccchhhhccccH-hheeeeeeccCceeeecCCCCcEEEEec
Confidence 45667666544 455555556666652 222222 456652 667888888654 588888 68999999
Q ss_pred CCCcEEEEEEe
Q psy16019 110 KSLDVIRPVTI 120 (121)
Q Consensus 110 ~tl~i~~~~~~ 120 (121)
.+++..+.|++
T Consensus 223 ~sgk~L~t~dl 233 (390)
T KOG3914|consen 223 TSGKLLDTCDL 233 (390)
T ss_pred ccCCcccccch
Confidence 99998888765
No 416
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=30.02 E-value=2.1e+02 Score=22.43 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.8
Q ss_pred EEEEecCCcEEEEEcCCC
Q psy16019 49 VVCALADGSVAIFRRGPD 66 (121)
Q Consensus 49 v~v~LanG~l~Vy~r~~~ 66 (121)
=++++.||.+.|-+|...
T Consensus 219 d~~al~d~~lLvLER~~~ 236 (326)
T PF13449_consen 219 DIAALPDGRLLVLERDFS 236 (326)
T ss_pred eEEEECCCcEEEEEccCC
Confidence 378899999999999743
No 417
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=29.70 E-value=84 Score=15.80 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=18.1
Q ss_pred EEEEEEeCCEEEEEecCCcEEEEEcCCCC
Q psy16019 39 VLNIVHVQGRVVCALADGSVAIFRRGPDG 67 (121)
Q Consensus 39 V~~i~~~~~~v~v~LanG~l~Vy~r~~~g 67 (121)
|.+|..-.+..++=+.||.|.-|-++..|
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~G 29 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYG 29 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTS
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCC
Confidence 45666667777777888888887655443
No 418
>KOG0645|consensus
Probab=29.59 E-value=3e+02 Score=22.12 Aligned_cols=66 Identities=15% Similarity=0.294 Sum_probs=45.4
Q ss_pred CCeEEEEecCCeEEEEECCcc-cceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCC
Q psy16019 5 LPTMWLGSQNGSVFVHSAVSQ-WRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWD 70 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~~-~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd 70 (121)
.+.+-.-+.|.++.|+...+. .-.|..-++ +..-|--...++ +.+|.+.=|.+|-+|++..++.|+
T Consensus 117 G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~ 186 (312)
T KOG0645|consen 117 GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWE 186 (312)
T ss_pred CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCee
Confidence 455666778888888886642 234555553 333344445554 789999999999999988777675
No 419
>KOG2041|consensus
Probab=28.97 E-value=1.6e+02 Score=27.12 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=29.4
Q ss_pred cCCeEEEEECCc-cc---------ceeeeeE--ecCCCEEEEEEeCCEEEEEecCCc
Q psy16019 13 QNGSVFVHSAVS-QW---------RRCLHSI--QLKDSVLNIVHVQGRVVCALADGS 57 (121)
Q Consensus 13 ~~g~I~v~~~~~-~~---------~~~l~~~--~l~~~V~~i~~~~~~v~v~LanG~ 57 (121)
.+|-|.||-+-. .| |..+.++ .+.++=.||.|.++.|.||..||+
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN 147 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN 147 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc
Confidence 477788775322 11 1234555 445677799999888888888776
No 420
>smart00284 OLF Olfactomedin-like domains.
Probab=28.86 E-value=1e+02 Score=23.96 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=22.6
Q ss_pred eeeeCCEEEEEeC-----CeEE--EEeCCCCcEEEEEE
Q psy16019 89 LAAVYNKVWCGYK-----NKIH--VVDPKSLDVIRPVT 119 (121)
Q Consensus 89 m~~v~~~lw~~~g-----n~I~--Vi~~~tl~i~~~~~ 119 (121)
+++-|+=||+=+. ++|. =||+.||++|++.+
T Consensus 133 lAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~ 170 (255)
T smart00284 133 LAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWI 170 (255)
T ss_pred EEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEE
Confidence 4555788999543 2354 48999999999875
No 421
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=28.72 E-value=21 Score=23.40 Aligned_cols=20 Identities=35% Similarity=0.785 Sum_probs=10.9
Q ss_pred EEecCCcEEEEEc-CCCCCCC
Q psy16019 51 CALADGSVAIFRR-GPDGQWD 70 (121)
Q Consensus 51 v~LanG~l~Vy~r-~~~g~wd 70 (121)
+||.+|.+.+++- +.||.|.
T Consensus 67 a~L~~gQ~vliE~rn~DGtWP 87 (88)
T PF14836_consen 67 AGLYDGQVVLIEERNEDGTWP 87 (88)
T ss_dssp TT--TTEEEEEEE--TTS--T
T ss_pred ccCcCCCEEEEEeeccCCCCC
Confidence 3577788777765 6799994
No 422
>KOG0641|consensus
Probab=27.82 E-value=3.1e+02 Score=21.68 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=50.2
Q ss_pred CCEEEEEEeC-CEEEEEec-CCcEEEEEcCCCCCCCCCCceE-EEeCCCCCceeEeeeeC-----CEEEEEeC---CeEE
Q psy16019 37 DSVLNIVHVQ-GRVVCALA-DGSVAIFRRGPDGQWDLSKYHT-VTLGLPHHSVRSLAAVY-----NKVWCGYK---NKIH 105 (121)
Q Consensus 37 ~~V~~i~~~~-~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~-i~lg~~~~pV~~m~~v~-----~~lw~~~g---n~I~ 105 (121)
.+|.|..+.. +++.+..+ |-++-+.+-+.+.. +...+.+ ++..+ ..||-|+..+ +.+-++.| ++|+
T Consensus 90 gsiyc~~ws~~geliatgsndk~ik~l~fn~dt~-~~~g~dle~nmhd--gtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 90 GSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC-NATGHDLEFNMHD--GTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred ccEEEEEecCccCeEEecCCCceEEEEecccccc-cccCcceeeeecC--CceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 5777777653 34554444 45677777666543 2233333 56666 8899999884 66666554 6899
Q ss_pred EEeCCCCcEEEE
Q psy16019 106 VVDPKSLDVIRP 117 (121)
Q Consensus 106 Vi~~~tl~i~~~ 117 (121)
+-|+.+++-.+-
T Consensus 167 ~tdc~~g~~~~a 178 (350)
T KOG0641|consen 167 ITDCGRGQGFHA 178 (350)
T ss_pred EeecCCCCccee
Confidence 999988876543
No 423
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.41 E-value=58 Score=26.42 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=15.8
Q ss_pred CCceeEeeee-CCEEEEEeC
Q psy16019 83 HHSVRSLAAV-YNKVWCGYK 101 (121)
Q Consensus 83 ~~pV~~m~~v-~~~lw~~~g 101 (121)
+.+||-|.+- ++++||||+
T Consensus 225 ~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred hcceeeeeeCCCCcEEEEEE
Confidence 4678888877 599999997
No 424
>KOG1310|consensus
Probab=27.33 E-value=4.1e+02 Score=23.62 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=43.4
Q ss_pred cCCCEEEEEEeC-CEEEEEecCCc-EEEEEcCCCCCCCCCCceEE---EeCCCCCceeEeeee---CCEEEE-EeC-CeE
Q psy16019 35 LKDSVLNIVHVQ-GRVVCALADGS-VAIFRRGPDGQWDLSKYHTV---TLGLPHHSVRSLAAV---YNKVWC-GYK-NKI 104 (121)
Q Consensus 35 l~~~V~~i~~~~-~~v~v~LanG~-l~Vy~r~~~g~wd~~~~~~i---~lg~~~~pV~~m~~v---~~~lw~-~~g-n~I 104 (121)
+.+-|-|+.+.. +..+++.+|-+ +.| ||.-++|.+ .-|. ..-|=|...+ ++++-+ |.| ..|
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~iv--------Wd~~~~KllhsI~TgH-taNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIV--------WDPFEYKLLHSISTGH-TANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEe--------ecchhcceeeeeeccc-ccceeEEeeeccCCCeEEEeccCcceE
Confidence 446898999863 45555555544 555 687777664 3333 2556665555 466655 455 479
Q ss_pred EEEeCCCC
Q psy16019 105 HVVDPKSL 112 (121)
Q Consensus 105 ~Vi~~~tl 112 (121)
+++|..++
T Consensus 120 ~lfdl~~~ 127 (758)
T KOG1310|consen 120 KLFDLDSS 127 (758)
T ss_pred EEEecccc
Confidence 99999863
No 425
>KOG2395|consensus
Probab=26.58 E-value=1.8e+02 Score=25.48 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=38.5
Q ss_pred CCCCCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEE-eCCEEEEEecCCcEEEEE
Q psy16019 1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVH-VQGRVVCALADGSVAIFR 62 (121)
Q Consensus 1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~-~~~~v~v~LanG~l~Vy~ 62 (121)
|++..+.+-+|+++|.|-+|+-.. ++-...+ -|-++|.-|-. .++.-.+|.-+-.|.+..
T Consensus 437 aTT~sG~IvvgS~~GdIRLYdri~--~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 437 ATTESGYIVVGSLKGDIRLYDRIG--RRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred eecCCceEEEeecCCcEEeehhhh--hhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence 467788999999999999999744 3333333 24467765543 244555555565655553
No 426
>PRK04922 tolB translocation protein TolB; Provisional
Probab=26.56 E-value=3.5e+02 Score=21.89 Aligned_cols=28 Identities=21% Similarity=0.063 Sum_probs=19.3
Q ss_pred EeeeeCCEEEEEeC----CeEEEEeCCCCcEE
Q psy16019 88 SLAAVYNKVWCGYK----NKIHVVDPKSLDVI 115 (121)
Q Consensus 88 ~m~~v~~~lw~~~g----n~I~Vi~~~tl~i~ 115 (121)
+..+.++.+++..+ .+|+++|..+.+..
T Consensus 342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred EECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 34455788877654 26999999887754
No 427
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=26.53 E-value=1e+02 Score=19.51 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=16.2
Q ss_pred EEeCCCCCceeEeeeeC-CEEEEEeCC
Q psy16019 77 VTLGLPHHSVRSLAAVY-NKVWCGYKN 102 (121)
Q Consensus 77 i~lg~~~~pV~~m~~v~-~~lw~~~gn 102 (121)
|.+|.|+++++-+.--+ +.+|+.|.+
T Consensus 3 i~vGtP~q~~~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 3 IGIGTPPQTFNVLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEeCCCCceEEEEEeCCCCCEEEeCCC
Confidence 56788777764433334 567887763
No 428
>KOG0641|consensus
Probab=26.41 E-value=3.3e+02 Score=21.53 Aligned_cols=99 Identities=16% Similarity=0.286 Sum_probs=57.1
Q ss_pred EecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCCC------
Q psy16019 11 GSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLP------ 82 (121)
Q Consensus 11 Gt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~------ 82 (121)
|..|..||+-++.. -+..+.+. +..-|+.+..-.+..|++.+--.-.=| ||+.-+.-+ .+++.
T Consensus 159 gagdc~iy~tdc~~--g~~~~a~sghtghilalyswn~~m~~sgsqdktirf-------wdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 159 GAGDCKIYITDCGR--GQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRF-------WDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred CCCcceEEEeecCC--CCcceeecCCcccEEEEEEecCcEEEccCCCceEEE-------EeeeccceeeeccCcccCCCc
Confidence 44577788877766 35677664 568899998888888887655443444 677655333 33321
Q ss_pred -CCceeEeeeeC-CEEEE-EeC-CeEEEEeCCCCcEEEEE
Q psy16019 83 -HHSVRSLAAVY-NKVWC-GYK-NKIHVVDPKSLDVIRPV 118 (121)
Q Consensus 83 -~~pV~~m~~v~-~~lw~-~~g-n~I~Vi~~~tl~i~~~~ 118 (121)
...|...++-. ++|-+ |-. ..-..+|...+....+|
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f 269 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF 269 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence 24455444432 44433 332 34556666665555544
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=26.07 E-value=3.3e+02 Score=21.47 Aligned_cols=94 Identities=9% Similarity=0.195 Sum_probs=52.7
Q ss_pred CCeEEEEecCCeEEEEECCc--ccceeeeeEecC-----CCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCc-e
Q psy16019 5 LPTMWLGSQNGSVFVHSAVS--QWRRCLHSIQLK-----DSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKY-H 75 (121)
Q Consensus 5 ~~tvwiGt~~g~I~v~~~~~--~~~~~l~~~~l~-----~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~ 75 (121)
.+.+|+-.+.|.++.-+... .|++ +..| -.++.+.+. ++.++++..+|.+. ..++.+..|...+. .
T Consensus 225 ~g~~~~vg~~G~~~~~s~d~G~sW~~----~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~ 299 (334)
T PRK13684 225 DGNLWMLARGGQIRFNDPDDLESWSK----PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGE 299 (334)
T ss_pred CCCEEEEecCCEEEEccCCCCCcccc----ccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCC
Confidence 45677777777654322222 3332 1233 246777766 55799999999765 45555567864221 1
Q ss_pred EEEeCCCCCceeEeeee-CCEEEEEeC-CeEEEEe
Q psy16019 76 TVTLGLPHHSVRSLAAV-YNKVWCGYK-NKIHVVD 108 (121)
Q Consensus 76 ~i~lg~~~~pV~~m~~v-~~~lw~~~g-n~I~Vi~ 108 (121)
+. +.+...+... +++.|+.-. ..|.-.+
T Consensus 300 ----~~-~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 300 ----EV-PSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred ----CC-CcceEEEEEeCCCceEEECCCceEEEec
Confidence 11 2456666665 577776444 4555543
No 430
>KOG1920|consensus
Probab=25.98 E-value=2.5e+02 Score=26.89 Aligned_cols=58 Identities=5% Similarity=0.058 Sum_probs=37.2
Q ss_pred CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecC--CcEEEEEc
Q psy16019 4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALAD--GSVAIFRR 63 (121)
Q Consensus 4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~Lan--G~l~Vy~r 63 (121)
.++.++++++.|.|++.|..+..-.+.. ...+.|-++....+.=.+|++. ++|.+...
T Consensus 79 d~~~i~v~~~~G~iilvd~et~~~eivg--~vd~GI~aaswS~Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 79 DTNSICVITALGDIILVDPETLELEIVG--NVDNGISAASWSPDEELLALITGRQTLLFMTK 138 (1265)
T ss_pred ccceEEEEecCCcEEEEcccccceeeee--eccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence 4678999999999999976653223333 3445677777665544444444 46666544
No 431
>PLN02193 nitrile-specifier protein
Probab=25.63 E-value=3.9e+02 Score=22.13 Aligned_cols=28 Identities=32% Similarity=0.531 Sum_probs=20.4
Q ss_pred EeeeeCCEEEEEeC------CeEEEEeCCCCcEE
Q psy16019 88 SLAAVYNKVWCGYK------NKIHVVDPKSLDVI 115 (121)
Q Consensus 88 ~m~~v~~~lw~~~g------n~I~Vi~~~tl~i~ 115 (121)
++..+++++++-.| +.++++|+.+.+-.
T Consensus 323 ~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 323 GLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred EEEEECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 35566788877544 67999999987654
No 432
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=25.48 E-value=2e+02 Score=18.70 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=10.8
Q ss_pred cCCeEEEEECCcccceeeeeE
Q psy16019 13 QNGSVFVHSAVSQWRRCLHSI 33 (121)
Q Consensus 13 ~~g~I~v~~~~~~~~~~l~~~ 33 (121)
.+|.+.+|+... +..+++-
T Consensus 28 ~dgnlV~~~~~~--~~~vW~s 46 (114)
T smart00108 28 NDYNLILYKSSS--RTVVWVA 46 (114)
T ss_pred CCEEEEEEECCC--CcEEEEC
Confidence 466776776442 3455554
No 433
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=25.04 E-value=2.8e+02 Score=23.88 Aligned_cols=43 Identities=7% Similarity=0.114 Sum_probs=28.8
Q ss_pred ecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecC
Q psy16019 12 SQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALAD 55 (121)
Q Consensus 12 t~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~Lan 55 (121)
.+.|.|..|++.++ .|.+++..+.++-.+-.-+++.+|+...+
T Consensus 155 ~~~~git~yn~~e~-~k~vw~~~fnGsyvdaRlynG~lYiv~rk 197 (603)
T COG4880 155 GEVGGITLYNLYES-SKKVWVYNFNGSYVDARLYNGELYIVARK 197 (603)
T ss_pred EEeCCEEEEEeccc-cceeEEEecCCceeeeeeeCCEEEEEEcc
Confidence 35688888888654 45688888876544555555567776663
No 434
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=24.63 E-value=2.1e+02 Score=18.64 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=26.2
Q ss_pred CeEEEEecCCeEE--EEECCcccceeeeeEecCC-CEEEEEEe--CCEEEEEec
Q psy16019 6 PTMWLGSQNGSVF--VHSAVSQWRRCLHSIQLKD-SVLNIVHV--QGRVVCALA 54 (121)
Q Consensus 6 ~tvwiGt~~g~I~--v~~~~~~~~~~l~~~~l~~-~V~~i~~~--~~~v~v~La 54 (121)
+.=|+|+++-.+. ||. +++....-++.-|+ .+..+... .|++|+=|.
T Consensus 5 ~~WW~GMk~~~LQLmvyG--~nI~~~~v~i~~~gV~i~~v~~~~npNYLFv~L~ 56 (88)
T PF09087_consen 5 PNWWVGMKNPELQLMVYG--KNIASAEVSISYPGVTIKKVVKTDNPNYLFVYLD 56 (88)
T ss_dssp SEEETT-SS-EEEEEEES--TTGGGSEEEE-BTTEEEEEEEE-SSTTEEEEEEE
T ss_pred CchhcCCCCCcEEEEEec--CCcccCEEEEeCCCeEEEEEEecCCCCEEEEEEe
Confidence 4569999999854 564 44444444554454 56666654 567877553
No 435
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=24.47 E-value=4.6e+02 Score=22.64 Aligned_cols=63 Identities=19% Similarity=0.101 Sum_probs=39.0
Q ss_pred EEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeCCEEEEEeCCeEEEEeC-CCCcE
Q psy16019 43 VHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDP-KSLDV 114 (121)
Q Consensus 43 ~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~-~tl~i 114 (121)
+..++++|++ .+|.+.+. |-..|...++.-|..----++..++.|..+..+.|..++. ++-+.
T Consensus 108 KtdG~~iy~s-~~~KvYvi--------~~~pp~~~~i~~~i~ecg~l~l~~nvL~i~~~~git~yn~~e~~k~ 171 (603)
T COG4880 108 KTDGERIYVS-VNGKVYVI--------DKNPPLLETIDCPIPECGILALGGNVLAIGEVGGITLYNLYESSKK 171 (603)
T ss_pred ccCCcEEEEE-eCCeEEEE--------cCCCchhhhcccCCccceEEEEcCcEEEEEEeCCEEEEEeccccce
Confidence 4567778887 78888887 4344555455432111112455578888888888888877 44443
No 436
>PRK04792 tolB translocation protein TolB; Provisional
Probab=24.32 E-value=4e+02 Score=21.85 Aligned_cols=27 Identities=19% Similarity=-0.012 Sum_probs=18.5
Q ss_pred eeeCCEEEEEeC----CeEEEEeCCCCcEEE
Q psy16019 90 AAVYNKVWCGYK----NKIHVVDPKSLDVIR 116 (121)
Q Consensus 90 ~~v~~~lw~~~g----n~I~Vi~~~tl~i~~ 116 (121)
.+.++.|.+.+. .+|+++|.++.+.++
T Consensus 314 SpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 314 HPDGKSLIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 344566766542 479999998887654
No 437
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=24.25 E-value=52 Score=20.93 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=13.1
Q ss_pred CCEEEEEe-cCCcEEEEEcCCC
Q psy16019 46 QGRVVCAL-ADGSVAIFRRGPD 66 (121)
Q Consensus 46 ~~~v~v~L-anG~l~Vy~r~~~ 66 (121)
....|.|+ +||.|++|.-.++
T Consensus 8 K~ngYfGi~~dG~LslF~G~P~ 29 (75)
T PF08955_consen 8 KENGYFGISEDGVLSLFEGPPG 29 (75)
T ss_dssp GT---EEEETTTEEEEBSSS-S
T ss_pred hcCeeEEEcCCCcEEEEecCCC
Confidence 34678997 5999999965543
No 438
>KOG0290|consensus
Probab=24.11 E-value=4e+02 Score=21.75 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=55.7
Q ss_pred EecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCce
Q psy16019 11 GSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSV 86 (121)
Q Consensus 11 Gt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV 86 (121)
+.++.+|.|.+..-+. ..+.++ .+.++|-.|+.. ...++.|..|-...+ ||++.+..=.+- .|+
T Consensus 262 ~~dS~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qali--------WDl~q~~~~~~~---dPi 329 (364)
T KOG0290|consen 262 AMDSNKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALI--------WDLQQMPRENGE---DPI 329 (364)
T ss_pred hcCCceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecCCcceEEE--------EecccccccCCC---Cch
Confidence 4567788888876642 234555 355788888864 456666666655555 577665432222 355
Q ss_pred eEee---eeCCEEEEEeC-CeEEEEeCCCCcEEE
Q psy16019 87 RSLA---AVYNKVWCGYK-NKIHVVDPKSLDVIR 116 (121)
Q Consensus 87 ~~m~---~v~~~lw~~~g-n~I~Vi~~~tl~i~~ 116 (121)
..-. .+++-=|-... +-|-|...++++|.|
T Consensus 330 lay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiLR 363 (364)
T KOG0290|consen 330 LAYTAGGEVNQIQWSSSQPDWIAICFGKKLEILR 363 (364)
T ss_pred hhhhccceeeeeeecccCCCEEEEEecCeeeEEe
Confidence 4333 12333477666 457777777777765
No 439
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=23.26 E-value=97 Score=28.95 Aligned_cols=60 Identities=12% Similarity=0.214 Sum_probs=37.3
Q ss_pred CCCCeEEEEecCCeEEEEECCcccce-eee------eEecC-CCEEEEEEeC-CEEEEEecCCcEEEEEcC
Q psy16019 3 SVLPTMWLGSQNGSVFVHSAVSQWRR-CLH------SIQLK-DSVLNIVHVQ-GRVVCALADGSVAIFRRG 64 (121)
Q Consensus 3 ~~~~tvwiGt~~g~I~v~~~~~~~~~-~l~------~~~l~-~~V~~i~~~~-~~v~v~LanG~l~Vy~r~ 64 (121)
..+..+.++|+ ..++++...-..|. ++. .+..+ -.|-||..++ +++|.|.+++ +.||+-.
T Consensus 141 ~i~hlL~vAT~-~e~~ilgvs~d~~T~Els~fnTgl~vsvqGinV~civs~e~GrIFf~g~~d-~nvyEl~ 209 (1263)
T COG5308 141 RISHLLFVATE-KEVMILGVSKDTKTGELSLFNTGLVVSVQGINVRCIVSEEDGRIFFGGEND-PNVYELV 209 (1263)
T ss_pred hhhhhhhhhhh-heeeEEEEEeccccceeEEEecceEEeccCceeEEEEeccCCcEEEecCCC-CCeEEEE
Confidence 44556677776 45566553332221 121 22334 3788998776 9999999999 8888764
No 440
>PF12280 BSMAP: Brain specific membrane anchored protein; InterPro: IPR022065 This family of proteins is found in eukaryotes. Proteins in this family are typically between 285 and 331 amino acids in length. BSMAP has a putative transmembrane domain and is predicted to be a type I membrane glycoprotein.
Probab=23.08 E-value=58 Score=24.63 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=16.6
Q ss_pred eEEEEecCCeEEEEECCcc
Q psy16019 7 TMWLGSQNGSVFVHSAVSQ 25 (121)
Q Consensus 7 tvwiGt~~g~I~v~~~~~~ 25 (121)
|.++..+||+|+||.+.-.
T Consensus 96 TfYLQaDdGKvVVfQsqp~ 114 (207)
T PF12280_consen 96 TFYLQADDGKVVVFQSQPE 114 (207)
T ss_pred EEEEEcCCCCEEEEecccc
Confidence 7899999999999997763
No 441
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=22.21 E-value=3.8e+02 Score=22.12 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeC
Q psy16019 57 SVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDP 109 (121)
Q Consensus 57 ~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~ 109 (121)
.++|++...-..|..+....+.... ..+.-|....+++++-.. ..+++++.
T Consensus 175 vl~i~~~g~l~~w~~~~Wt~l~~~~--~~~~DIi~~kGkfYAvD~~G~l~~i~~ 226 (373)
T PLN03215 175 VLGIGRDGKINYWDGNVLKALKQMG--YHFSDIIVHKGQTYALDSIGIVYWINS 226 (373)
T ss_pred EEEEeecCcEeeecCCeeeEccCCC--ceeeEEEEECCEEEEEcCCCeEEEEec
Confidence 5667655544557755555565433 777788888999999766 68999884
No 442
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=21.82 E-value=4e+02 Score=20.89 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=17.8
Q ss_pred eeeCCEEEEEeCC----eEEEEeCCCCcEE
Q psy16019 90 AAVYNKVWCGYKN----KIHVVDPKSLDVI 115 (121)
Q Consensus 90 ~~v~~~lw~~~gn----~I~Vi~~~tl~i~ 115 (121)
.+.++.++++... +|+++|..+.+.+
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGGER 359 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence 3446777776653 7999999886554
No 443
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=21.70 E-value=1.3e+02 Score=24.74 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=26.7
Q ss_pred CCCEEEEEEeCCEEEEEecC--CcEEEEEcCCC
Q psy16019 36 KDSVLNIVHVQGRVVCALAD--GSVAIFRRGPD 66 (121)
Q Consensus 36 ~~~V~~i~~~~~~v~v~Lan--G~l~Vy~r~~~ 66 (121)
.+-|+...|...-.|+|.+| |.|..|+|...
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s 58 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKS 58 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccc
Confidence 36788888888779999999 99999999754
No 444
>PRK04792 tolB translocation protein TolB; Provisional
Probab=20.97 E-value=4.7e+02 Score=21.43 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=50.0
Q ss_pred CCCeEE-EEecCC--eEEEEECCcccceeeeeE-ecCCCEEEEEEeC--CE-EEEEecCCcEEEEEcCCCCCCCCCCceE
Q psy16019 4 VLPTMW-LGSQNG--SVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQ--GR-VVCALADGSVAIFRRGPDGQWDLSKYHT 76 (121)
Q Consensus 4 ~~~tvw-iGt~~g--~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~--~~-v~v~LanG~l~Vy~r~~~g~wd~~~~~~ 76 (121)
....+. ....+| .||++++... + ...+ ..+.......+.. .+ +|++-.+|...+|.-+.++ .....
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg--~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~----g~~~~ 344 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATK--A-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS----GKVSR 344 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCC--C-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC----CCEEE
Confidence 344454 455566 4888887652 2 2222 1122233334432 23 3444445665555433211 11233
Q ss_pred EEeCCCCCceeEeeeeCCEEEEEeC----CeEEEEeCCCCcEE
Q psy16019 77 VTLGLPHHSVRSLAAVYNKVWCGYK----NKIHVVDPKSLDVI 115 (121)
Q Consensus 77 i~lg~~~~pV~~m~~v~~~lw~~~g----n~I~Vi~~~tl~i~ 115 (121)
++.......-.+..+.++.|++... .+|+++|..+.+..
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 4332211111144555677777543 26888999888754
No 445
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=20.89 E-value=81 Score=20.31 Aligned_cols=17 Identities=29% Similarity=0.868 Sum_probs=13.0
Q ss_pred ecCCcEEEEEcC-CCCCC
Q psy16019 53 LADGSVAIFRRG-PDGQW 69 (121)
Q Consensus 53 LanG~l~Vy~r~-~~g~w 69 (121)
-..|+|.||... +||.|
T Consensus 71 ~~~g~l~v~~~s~~dGs~ 88 (88)
T PF10648_consen 71 PGKGTLEVFEDSAKDGSW 88 (88)
T ss_pred CCceEEEEEEeCCCCCCC
Confidence 346889999875 67877
No 446
>KOG2139|consensus
Probab=20.53 E-value=2.1e+02 Score=23.90 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=37.1
Q ss_pred CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeee---CCEEEEEeCCeEEEEe
Q psy16019 46 QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV---YNKVWCGYKNKIHVVD 108 (121)
Q Consensus 46 ~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v---~~~lw~~~gn~I~Vi~ 108 (121)
-...-+|+-|-+|.+|+.+. ...+++-+. .+.-|+||+-- .++|.+||+..|-+-.
T Consensus 110 ~~~fava~nddvVriy~kss-----t~pt~Lks~--sQrnvtclawRPlsaselavgCr~gIciW~ 168 (445)
T KOG2139|consen 110 IIAFAVATNDDVVRIYDKSS-----TCPTKLKSV--SQRNVTCLAWRPLSASELAVGCRAGICIWS 168 (445)
T ss_pred hhhhhhhccCcEEEEeccCC-----CCCceecch--hhcceeEEEeccCCcceeeeeecceeEEEE
Confidence 34455677788999996553 122222222 25789999965 4899999998776653
No 447
>PRK03467 hypothetical protein; Provisional
Probab=20.27 E-value=1.3e+02 Score=21.34 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=20.7
Q ss_pred CceeEeeee-CCEEEEEeCCeEEEEeCCCCcE
Q psy16019 84 HSVRSLAAV-YNKVWCGYKNKIHVVDPKSLDV 114 (121)
Q Consensus 84 ~pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~i 114 (121)
+.|-+|+.. ++.+||+ +.-|++|.+.+.+
T Consensus 17 ~hvltLa~~~~~~~w~A--~cFY~fd~~~~~l 46 (144)
T PRK03467 17 QHVVTLCVGQEGELWCA--NCFYVFDAQKVAF 46 (144)
T ss_pred CcEEEEEEEcCCCcceE--EEEEEEcCCCeEE
Confidence 556666666 5789998 6788888876543
No 448
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=20.05 E-value=4.5e+02 Score=20.88 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEE
Q psy16019 36 KDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVI 115 (121)
Q Consensus 36 ~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~ 115 (121)
+....++..++++|++.-..|-..+| |.+...+...-....| ...+ +.++-|+++|+++.......
T Consensus 66 ~~~~~F~al~gskIv~~d~~~~t~vy--------Dt~t~av~~~P~l~~p--k~~p----isv~VG~~LY~m~~~~~~~~ 131 (342)
T PF07893_consen 66 PWSMDFFALHGSKIVAVDQSGRTLVY--------DTDTRAVATGPRLHSP--KRCP----ISVSVGDKLYAMDRSPFPEP 131 (342)
T ss_pred CceeEEEEecCCeEEEEcCCCCeEEE--------ECCCCeEeccCCCCCC--Ccce----EEEEeCCeEEEeeccCcccc
Q ss_pred E------EEEe
Q psy16019 116 R------PVTI 120 (121)
Q Consensus 116 ~------~~~~ 120 (121)
. +|||
T Consensus 132 ~~~~~~~~FE~ 142 (342)
T PF07893_consen 132 AGRPDFPCFEA 142 (342)
T ss_pred ccCccceeEEE
Done!