RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16019
         (121 letters)



>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite
          reductase subunit beta, DsrB {Desulfovibrio vulgaris
          [TaxId: 881]}
          Length = 177

 Score = 28.5 bits (63), Expect = 0.17
 Identities = 13/60 (21%), Positives = 16/60 (26%), Gaps = 10/60 (16%)

Query: 38 SVLNIVHVQGRVVCAL----ADGSVA-----IFRRGPDGQWDLSKYHTVTLGLPHHSVRS 88
           V NIVH QG V C      A G V      +F          +          +     
Sbjct: 3  GVSNIVHTQGWVHCHTPATDASGPVKAIMDEVFED-FQSMRLPAPVRISLACCINMCGAV 61


>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476
           {Pectobacterium atrosepticum [TaxId: 29471]}
          Length = 132

 Score = 26.5 bits (57), Expect = 0.68
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 60  IFRRGPDGQWDLSKYH 75
           + R+   G W  ++Y 
Sbjct: 111 LLRKSATGSWQTARYC 126


>d1fmd1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus)
           coat proteins {FMDV (Foot-and-mouth disease virus),
           strain bfs, 1860 [TaxId: 12110]}
          Length = 207

 Score = 26.2 bits (58), Expect = 0.93
 Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 2/35 (5%)

Query: 72  SKYHTVTLGLPHHSV-RSLAAVYNKVWCGYKNKIH 105
            K     L LP+ +  R LA  Y      Y     
Sbjct: 108 HKGPVTRLALPYTAPHRVLATAYTG-TTTYTASAR 141


>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite
          reductase subunit beta, DsrB {Archaeoglobus fulgidus
          [TaxId: 2234]}
          Length = 179

 Score = 25.0 bits (54), Expect = 2.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 36 KDSVLNIVHVQGRVVCALA 54
          +  + NIVH QG + C   
Sbjct: 3  EYGLSNIVHTQGWIHCHTP 21


>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
           megaterium [TaxId: 1404]}
          Length = 453

 Score = 25.1 bits (53), Expect = 3.3
 Identities = 4/50 (8%), Positives = 15/50 (30%), Gaps = 3/50 (6%)

Query: 64  GPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKV---WCGYKNKIHVVDPK 110
            P    +L     +    P  ++  +A    ++       +   ++   +
Sbjct: 5   QPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQR 54


>d1sg7a1 a.239.1.1 (A:22-96) Putative cation transport regulator
           ChaB {Escherichia coli [TaxId: 562]}
          Length = 75

 Score = 23.3 bits (50), Expect = 5.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 76  TVTLGLPHHSVRSLAAVYNKVWCGYKNK 103
           +V   LP H+       +N  W  YK+K
Sbjct: 11  SVKHVLPSHAQDIYKEAFNSAWDQYKDK 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 470,887
Number of extensions: 19411
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 15
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.6 bits)