BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16020
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|B Chain B, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|C Chain C, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|D Chain D, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2WO6|A Chain A, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
pdb|2WO6|B Chain B, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
Length = 382
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 11 LNKILDT-ALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSK 52
+NKI++ +PP H+ + A + F + PDG W+L K
Sbjct: 267 MNKIVEVLGIPPAHILDQ-----APKARKFFEKLPDGTWNLKK 304
>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|B Chain B, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|C Chain C, Human Dyrk1a In Complex With Leucettine L41
Length = 382
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 11 LNKILDT-ALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSK 52
+NKI++ +PP H+ + A + F + PDG W+L K
Sbjct: 267 MNKIVEVLGIPPAHILDQ-----APKARKFFEKLPDGTWNLKK 304
>pdb|3BBN|Q Chain Q, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 142
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 24 VQGRVVCALADGSVAI 39
+QGRVVCA +D +VA+
Sbjct: 63 MQGRVVCATSDKTVAV 78
>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|B Chain B, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|C Chain C, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|D Chain D, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANR|A Chain A, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|B Chain B, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|C Chain C, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|D Chain D, Human Dyrk1aHARMINE COMPLEX
Length = 368
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 11 LNKILDT-ALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSK 52
+NKI++ +PP H+ + A + F + PDG W+L K
Sbjct: 248 MNKIVEVLGIPPAHILDQ-----APKARKFFEKLPDGTWNLKK 285
>pdb|3DXA|D Chain D, Crystal Structure Of The Dm1 Tcr In Complex With
Hla-B4405 And Decamer Ebv Antigen
pdb|3DXA|I Chain I, Crystal Structure Of The Dm1 Tcr In Complex With
Hla-B4405 And Decamer Ebv Antigen
pdb|3DXA|N Chain N, Crystal Structure Of The Dm1 Tcr In Complex With
Hla-B4405 And Decamer Ebv Antigen
Length = 199
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 57 TLGLPHHSVRSLAAVYNKVWCGYK 80
TL LPH ++R A Y VW GY+
Sbjct: 71 TLILPHATLRDTAVYYCIVWGGYQ 94
>pdb|3DX9|A Chain A, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DX9|C Chain C, Crystal Structure Of The Dm1 Tcr At 2.75a
Length = 198
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 57 TLGLPHHSVRSLAAVYNKVWCGYK 80
TL LPH ++R A Y VW GY+
Sbjct: 71 TLILPHATLRDTAVYYCIVWGGYQ 94
>pdb|3DFI|A Chain A, The Crystal Structure Of Antimicrobial Reagent A40926
Pseudoaglycone Deacetylase Dbv21
Length = 270
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 38 AIFRRGPDGQWDL--SKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLVVLK 95
AI+RR PDGQW L ++ V P ++ +AA+ + ++ I DP ++
Sbjct: 98 AIYRRSPDGQWLLHHNEGSMVRQQSPANNHDLVAAIREDI----ESMIAECDPTLVLTCV 153
Query: 96 SFDAHP 101
+ HP
Sbjct: 154 AIGKHP 159
>pdb|3VGZ|A Chain A, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|B Chain B, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|C Chain C, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|D Chain D, Crystal Structure Of E. Coli Ynce
Length = 353
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 66 RSLAAVYN----KVWCGYKN--KIHVVDPKSLVVLKSFD--AHPRRESQVRQMTWAGDGV 117
SLA ++N + + ++ K+ V+D KS V+K+FD HP + ++ G +
Sbjct: 273 ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLA----LSADGKTL 328
Query: 118 WVSIRLDST 126
+VS++ ST
Sbjct: 329 YVSVKQKST 337
>pdb|3VH0|A Chain A, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|B Chain B, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|C Chain C, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|D Chain D, Crystal Structure Of E. Coli Ynce Complexed With Dna
Length = 353
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 66 RSLAAVYN----KVWCGYKN--KIHVVDPKSLVVLKSFD--AHPRRESQVRQMTWAGDGV 117
SLA ++N + + ++ K+ V+D KS V+K+FD HP + ++ G +
Sbjct: 273 ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLA----LSADGKTL 328
Query: 118 WVSIRLDST 126
+VS++ ST
Sbjct: 329 YVSVKQKST 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,060,568
Number of Sequences: 62578
Number of extensions: 188825
Number of successful extensions: 377
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 9
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)