BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16020
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58A65|JIP4_MOUSE C-Jun-amino-terminal kinase-interacting protein 4 OS=Mus musculus
GN=Spag9 PE=1 SV=2
Length = 1321
Score = 227 bits (578), Expect = 2e-59, Method: Composition-based stats.
Identities = 99/139 (71%), Positives = 119/139 (85%)
Query: 13 KILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY 72
K+ D+ L VHV+G V+ ALADG++AIF RG DGQWDLS YH + LG PHHS+R + V+
Sbjct: 998 KLKDSILSIVHVKGIVLVALADGTLAIFHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVH 1057
Query: 73 NKVWCGYKNKIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNA 132
+KVWCGY+NKI+VV PK++ + KSFDAHPR+ESQVRQ+ W GDGVWVSIRLDSTLR+Y+A
Sbjct: 1058 DKVWCGYRNKIYVVQPKAMKIEKSFDAHPRKESQVRQLAWVGDGVWVSIRLDSTLRLYHA 1117
Query: 133 HTYQHLQDVDIEPYVSKML 151
HTYQHLQDVDIEPYVSKML
Sbjct: 1118 HTYQHLQDVDIEPYVSKML 1136
>sp|Q9UPT6|JIP3_HUMAN C-Jun-amino-terminal kinase-interacting protein 3 OS=Homo sapiens
GN=MAPK8IP3 PE=1 SV=3
Length = 1336
Score = 227 bits (578), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 101/139 (72%), Positives = 121/139 (87%)
Query: 13 KILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY 72
K+ D+ L VHV+GRV+ ALADG++AIF RG DGQWDLS YH + LG PHHS+R +A VY
Sbjct: 997 KLKDSVLSLVHVKGRVLVALADGTLAIFHRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVY 1056
Query: 73 NKVWCGYKNKIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNA 132
++VWCGYKNK+HV+ PK++ + KSFDAHPRRESQVRQ+ W GDGVWVSIRLDSTLR+Y+A
Sbjct: 1057 DRVWCGYKNKVHVIQPKTMQIEKSFDAHPRRESQVRQLAWIGDGVWVSIRLDSTLRLYHA 1116
Query: 133 HTYQHLQDVDIEPYVSKML 151
HT+QHLQDVDIEPYVSKML
Sbjct: 1117 HTHQHLQDVDIEPYVSKML 1135
>sp|O60271|JIP4_HUMAN C-Jun-amino-terminal kinase-interacting protein 4 OS=Homo sapiens
GN=SPAG9 PE=1 SV=4
Length = 1321
Score = 226 bits (577), Expect = 3e-59, Method: Composition-based stats.
Identities = 99/139 (71%), Positives = 119/139 (85%)
Query: 13 KILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY 72
K+ D+ L VHV+G V+ ALADG++AIF RG DGQWDLS YH + LG PHHS+R + V+
Sbjct: 998 KLKDSILSIVHVKGIVLVALADGTLAIFHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVH 1057
Query: 73 NKVWCGYKNKIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNA 132
+KVWCGY+NKI+VV PK++ + KSFDAHPR+ESQVRQ+ W GDGVWVSIRLDSTLR+Y+A
Sbjct: 1058 DKVWCGYRNKIYVVQPKAMKIEKSFDAHPRKESQVRQLAWVGDGVWVSIRLDSTLRLYHA 1117
Query: 133 HTYQHLQDVDIEPYVSKML 151
HTYQHLQDVDIEPYVSKML
Sbjct: 1118 HTYQHLQDVDIEPYVSKML 1136
>sp|Q9ESN9|JIP3_MOUSE C-Jun-amino-terminal kinase-interacting protein 3 OS=Mus musculus
GN=Mapk8ip3 PE=1 SV=1
Length = 1337
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 100/139 (71%), Positives = 120/139 (86%)
Query: 13 KILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY 72
K+ D+ L VHV+GRV+ ALADG++AIF RG DGQWDLS YH + LG PHHS+R +A V
Sbjct: 998 KLKDSVLSLVHVKGRVLVALADGTLAIFHRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVN 1057
Query: 73 NKVWCGYKNKIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNA 132
++VWCGYKNK+HV+ PK++ + KSFDAHPRRESQVRQ+ W GDGVWVSIRLDSTLR+Y+A
Sbjct: 1058 DRVWCGYKNKVHVIQPKTMQIEKSFDAHPRRESQVRQLAWIGDGVWVSIRLDSTLRLYHA 1117
Query: 133 HTYQHLQDVDIEPYVSKML 151
HT+QHLQDVDIEPYVSKML
Sbjct: 1118 HTHQHLQDVDIEPYVSKML 1136
>sp|Q9GQF1|JIP3_DROME JNK-interacting protein 3 OS=Drosophila melanogaster GN=syd PE=1 SV=1
Length = 1227
Score = 187 bits (476), Expect = 1e-47, Method: Composition-based stats.
Identities = 87/143 (60%), Positives = 108/143 (75%), Gaps = 2/143 (1%)
Query: 11 LNKIL--DTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSL 68
L+++L D L VHV+ RVV ALA+ +A+FRR DGQWDL+ YH VTLG +HS+R L
Sbjct: 940 LHRVLLPDAVLAIVHVEARVVVALANAQLAVFRRQTDGQWDLNSYHLVTLGDRNHSIRCL 999
Query: 69 AAVYNKVWCGYKNKIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLR 128
++W ++NKI +VDP SL ++ S DAHPR+ESQVRQM G GVWVSIRLDSTLR
Sbjct: 1000 CVAGERIWAAHRNKIFIVDPVSLNIVHSLDAHPRKESQVRQMAATGAGVWVSIRLDSTLR 1059
Query: 129 MYNAHTYQHLQDVDIEPYVSKML 151
+YN HT++H QDVDIEPYVSKML
Sbjct: 1060 LYNTHTFEHKQDVDIEPYVSKML 1082
>sp|Q29EP6|JIP3_DROPS JNK-interacting protein 3 OS=Drosophila pseudoobscura pseudoobscura
GN=syd PE=3 SV=2
Length = 1235
Score = 187 bits (475), Expect = 2e-47, Method: Composition-based stats.
Identities = 87/143 (60%), Positives = 108/143 (75%), Gaps = 2/143 (1%)
Query: 11 LNKIL--DTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSL 68
L+++L D L VHV+ RVV ALA+ +A+FRR DGQWDL+ YH VTLG +HS+R L
Sbjct: 948 LHRVLLPDAVLAIVHVEARVVVALANAQLAVFRRQTDGQWDLNSYHLVTLGDRNHSIRCL 1007
Query: 69 AAVYNKVWCGYKNKIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLR 128
++W ++NKI +VDP SL ++ S DAHPR+ESQVRQM G GVWVSIRLDSTLR
Sbjct: 1008 CVAGERIWAAHRNKIFIVDPISLNIVHSLDAHPRKESQVRQMAATGAGVWVSIRLDSTLR 1067
Query: 129 MYNAHTYQHLQDVDIEPYVSKML 151
+YN HT++H QDVDIEPYVSKML
Sbjct: 1068 LYNTHTFEHKQDVDIEPYVSKML 1090
>sp|P34609|JIP_CAEEL JNK-interacting protein OS=Caenorhabditis elegans GN=unc-16 PE=1
SV=3
Length = 1157
Score = 169 bits (427), Expect = 7e-42, Method: Composition-based stats.
Identities = 77/139 (55%), Positives = 100/139 (71%)
Query: 13 KILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY 72
K+ D L VH + R+ ALA+G++AIF R G+W YH++ +G SVRSL V
Sbjct: 846 KMPDAVLSIVHYKSRIFAALANGTIAIFHRNKHGEWSDEGYHSLRVGSATSSVRSLCLVS 905
Query: 73 NKVWCGYKNKIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNA 132
+W YKN + V+D +SL ++K F AHPR++SQVR M W G GVW+SIRLDSTLR+Y+A
Sbjct: 906 TNIWATYKNCVVVLDAESLQIVKVFAAHPRKDSQVRNMQWVGAGVWLSIRLDSTLRLYHA 965
Query: 133 HTYQHLQDVDIEPYVSKML 151
HTY+HLQDVDIEPYV+KML
Sbjct: 966 HTYEHLQDVDIEPYVTKML 984
>sp|O15013|ARHGA_HUMAN Rho guanine nucleotide exchange factor 10 OS=Homo sapiens GN=ARHGEF10
PE=1 SV=4
Length = 1369
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 30 CALADGSVAIFRRGPDGQWDLSKYHTVTLG-LPHHSVRSLAAVYNKVWCGYKNKIHVVDP 88
L +G+VA + R PDG WD + LG LP VRSL + + +W ++ ++
Sbjct: 1037 AGLVNGAVASYARAPDGSWDSEPQKVIKLGVLP---VRSLLMMEDTLWAASGGQVFIISV 1093
Query: 89 KSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVS 148
++ V +AH + M +G G+W++ STLR+++ T +HLQD++I V
Sbjct: 1094 ETHAVEGQLEAHQEEGMVISHMAVSGVGIWIAFTSGSTLRLFHTETLKHLQDINIATPVH 1153
Query: 149 KML 151
ML
Sbjct: 1154 NML 1156
>sp|Q8C033|ARHGA_MOUSE Rho guanine nucleotide exchange factor 10 OS=Mus musculus GN=Arhgef10
PE=1 SV=2
Length = 1345
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 31 ALADGSVAIFRRGPDGQWDLSKYHTVTLG-LPHHSVRSLAAVYNKVWCGYKNKIHVVDPK 89
L +GSVA + + PDG W+ + LG LP VRSL V +W ++ + +
Sbjct: 1015 GLVNGSVASYTKAPDGSWNSEPQQVIKLGVLP---VRSLLLVEGALWAASGGQVFMASVE 1071
Query: 90 SLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSK 149
+ + +AH + M AG G+W++ STLR+++ T +HLQDV+I+ V
Sbjct: 1072 THTIENQLEAHQDEGMVISHMAVAGVGIWIAFTSGSTLRLFHTETLKHLQDVNIDAPVHS 1131
Query: 150 ML 151
ML
Sbjct: 1132 ML 1133
>sp|Q80U35|ARHGH_MOUSE Rho guanine nucleotide exchange factor 17 OS=Mus musculus GN=Arhgef17
PE=1 SV=2
Length = 2057
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 72/130 (55%)
Query: 22 VHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKN 81
+++ +V +LA+G + +++R WD + ++TLG + + +V ++WCG +N
Sbjct: 1772 LYLNNKVFVSLANGELVVYQREAGRFWDPQNFKSMTLGSQGSPITKMVSVGGRLWCGCQN 1831
Query: 82 KIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDV 141
++ V+ P +L + +F V M + GVWV+++ + + +Y+ T++ L +V
Sbjct: 1832 RVLVLSPDTLQLEHTFYVGQDSSRSVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEV 1891
Query: 142 DIEPYVSKML 151
D+ P V +ML
Sbjct: 1892 DVTPPVHRML 1901
>sp|Q96PE2|ARHGH_HUMAN Rho guanine nucleotide exchange factor 17 OS=Homo sapiens GN=ARHGEF17
PE=1 SV=1
Length = 2063
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 71/130 (54%)
Query: 22 VHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKN 81
+++ +V +LA+G + +++R WD + +VTLG + + +V ++WCG +N
Sbjct: 1778 LYLNNQVFVSLANGELVVYQREAGHFWDPQNFKSVTLGTQGSPITKMVSVGGRLWCGCQN 1837
Query: 82 KIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDV 141
++ V+ P +L + F V M + GVWV+++ + + +Y+ T++ L +V
Sbjct: 1838 RVLVLSPDTLQLEHMFYVGQDSSRCVACMVDSSLGVWVTLKGSAHVCLYHPDTFEQLAEV 1897
Query: 142 DIEPYVSKML 151
D+ P V +ML
Sbjct: 1898 DVTPPVHRML 1907
>sp|A2AWP8|ARGAL_MOUSE Rho guanine nucleotide exchange factor 10-like protein OS=Mus
musculus GN=Arhgef10l PE=1 SV=1
Length = 1280
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 28 VVCALADGSVAIF-RRGPDGQWDL-SKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHV 85
++ L DG++A + R D WDL S +T+G +R+L ++ + W ++ V
Sbjct: 935 LLAGLQDGTLAAYPRTSGDIPWDLESPPMCITVG--PGPIRTLLSLEDAAWASCGPRVTV 992
Query: 86 VDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 145
+D +L +SF+AH V M AG GVW++ S++R+++ T +HLQ+++I
Sbjct: 993 LDAATLQTQQSFEAHQDEAVSVTHMVKAGSGVWMAFSSGSSIRLFHTETLEHLQEINIAT 1052
Query: 146 YVSKML 151
+ +L
Sbjct: 1053 RTTFLL 1058
>sp|Q29RM4|ARGAL_BOVIN Rho guanine nucleotide exchange factor 10-like protein OS=Bos taurus
GN=ARHGEF10L PE=2 SV=1
Length = 1237
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 28 VVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVV 86
++ L DG++A + R WDL + + L + VR+L ++ VW ++ V+
Sbjct: 893 LLAGLQDGTLAAYPRTSGSVPWDL-ESPPMCLPVGPGPVRALLSLEEAVWASCGPRVTVL 951
Query: 87 DPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPY 146
D SL +SF+AH V M AG GVW++ S++R+++ T +HLQ+++I
Sbjct: 952 DATSLQTQQSFEAHQDEAVSVTHMVKAGSGVWMAFSSGSSIRLFHTETLEHLQEINIATR 1011
Query: 147 VSKML 151
+ +L
Sbjct: 1012 TTFLL 1016
>sp|Q5R5M3|ARGAL_PONAB Rho guanine nucleotide exchange factor 10-like protein OS=Pongo
abelii GN=ARHGEF10L PE=2 SV=1
Length = 1233
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 28 VVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVV 86
++ L DG++A + R G WDL + V L + VR+L ++ + VW ++ V+
Sbjct: 891 LLAGLQDGTLAAYPRTSGGVLWDL-ESPPVCLTVGPGPVRTLLSLEDAVWASCGPRVTVL 949
Query: 87 DPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPY 146
+ +L +SF+AH V M AG GVW++ +++R+++ T +HLQ+++I
Sbjct: 950 EATTLQPQQSFEAHQDEAVSVTHMVKAGSGVWMAFSSGTSIRLFHTETLEHLQEINIATR 1009
Query: 147 VSKML 151
+ +L
Sbjct: 1010 TTFLL 1014
>sp|Q9HCE6|ARGAL_HUMAN Rho guanine nucleotide exchange factor 10-like protein OS=Homo
sapiens GN=ARHGEF10L PE=1 SV=3
Length = 1279
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 28 VVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVV 86
++ L DG++A + R G WDL + V L + VR+L ++ + VW + V+
Sbjct: 937 LLAGLQDGTLAAYPRTSGGVLWDL-ESPPVCLTVGPGPVRTLLSLEDAVWASCGPWVTVL 995
Query: 87 DPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPY 146
+ +L +SF+AH V M AG GVW++ +++R+++ T +HLQ+++I
Sbjct: 996 EATTLQPQQSFEAHQDEAVSVTHMVKAGSGVWMAFSSGTSIRLFHTETLEHLQEINIATR 1055
Query: 147 VSKML 151
+ +L
Sbjct: 1056 TTFLL 1060
>sp|A4XQR9|MURE_PSEMY UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Pseudomonas mendocina (strain ymp) GN=murE
PE=3 SV=1
Length = 487
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 1 MEYPHPTPYPLNKILDTALPPVHVQGRVVCALADG 35
++Y H TP L K+L+ P HVQGR+VC G
Sbjct: 344 VDYAH-TPDALEKVLEAMRP--HVQGRLVCLFGCG 375
>sp|P39001|UME6_YEAST Transcriptional regulatory protein UME6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UME6 PE=1 SV=2
Length = 836
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 4 PHPTPYPLNKILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHH 63
PH + +P +L L +H + ++ S A+F D DLS YH L L
Sbjct: 561 PHSSSFPSKGVLRPILLRIHNSEQQPIFESNNSTAVFDEDQDQNQDLSPYH---LNL--- 614
Query: 64 SVRSLAAVYNKVWCGYKNKIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRL 123
N V+DP ES+ RQ+TW +G + RL
Sbjct: 615 -----------------NSKKVLDPTF-------------ESRTRQVTWNKNGKRIDRRL 644
Query: 124 DS 125
+
Sbjct: 645 SA 646
>sp|A5DHD2|CIAO1_PICGU Probable cytosolic iron-sulfur protein assembly protein 1
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=CIA1
PE=3 SV=2
Length = 382
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 26 GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLA 69
GR+ A ADG +A++++ DG W++ + G+ H + +LA
Sbjct: 318 GRIASAGADGKIAVYKQ-TDGVWEIEGVTSAAHGV--HEINTLA 358
>sp|Q2GSJ9|HIR1_CHAGB Protein HIR1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51
/ DSM 1962 / NBRC 6347 / NRRL 1970) GN=HIR1 PE=3 SV=1
Length = 1080
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 94 LKSFDAHPR---RESQVRQMTWAGD-GVWVSIRLDSTLRMYNAHTYQHLQDVDI 143
++++ H R +S V+ + W+ D + VS+ LDS + +++ HT++ L+ + +
Sbjct: 118 VENWKTHKRLVGHDSDVQDLAWSYDNSILVSVGLDSKVVVWSGHTFEKLKTIAV 171
>sp|B6JHH8|EFP_OLICO Elongation factor P OS=Oligotropha carboxidovorans (strain ATCC
49405 / DSM 1227 / OM5) GN=efp PE=3 SV=1
Length = 188
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 87 DPKSLVVLKSFDAHPRRESQVRQ--MTWAGDGVWVSIRLDSTLRMYNAHTYQH 137
D K VVL + + HP + + V Q M DGV +S R +T ++ AH H
Sbjct: 17 DGKLYVVLSAENIHPGKGTPVSQIEMRRISDGVKISERYKTTDQVERAHVEDH 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,018,188
Number of Sequences: 539616
Number of extensions: 2321148
Number of successful extensions: 4236
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4216
Number of HSP's gapped (non-prelim): 28
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)