RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16020
         (151 letters)



>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
           {Paracoccus denitrificans [TaxId: 266]}
          Length = 337

 Score = 30.5 bits (67), Expect = 0.063
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 77  CGYKNKIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDG--VWVSIRLDSTLRMYNAHT 134
               +K+ V+D + + V K         +       A  G   + ++    +L   +  T
Sbjct: 7   PARPDKLVVIDTEKMAVDKVITIADAGPT-PMVPMVAPGGRIAYATVNKSESLVKIDLVT 65

Query: 135 YQHL 138
            + L
Sbjct: 66  GETL 69


>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
           megaterium [TaxId: 1404]}
          Length = 453

 Score = 29.3 bits (64), Expect = 0.18
 Identities = 10/102 (9%), Positives = 31/102 (30%), Gaps = 5/102 (4%)

Query: 43  GPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKV---WCGYKNKIHVVDPKSL--VVLKSF 97
            P    +L     +    P  ++  +A    ++       +   ++   + +     +S 
Sbjct: 5   QPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESR 64

Query: 98  DAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQ 139
                 ++      +AGDG++ S   +   +  +        
Sbjct: 65  FDKNLSQALKFVRDFAGDGLFTSWTHEKNWKKAHNILLPSFS 106


>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
           {Pseudomonas putida [TaxId: 303]}
          Length = 346

 Score = 29.3 bits (64), Expect = 0.18
 Identities = 13/65 (20%), Positives = 21/65 (32%)

Query: 78  GYKNKIHVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQH 137
            Y N +HVVD  S  V KS     +       M       +V       +   +  T ++
Sbjct: 15  NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN 74

Query: 138 LQDVD 142
               +
Sbjct: 75  TFHAN 79



 Score = 23.9 bits (50), Expect = 9.3
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 34  DGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLA--AVYNKVW-CGYKNKIHVVDPKS 90
           D +          ++DL +   +      H+   +A     +K++  G  N + V +P +
Sbjct: 263 DPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322

Query: 91  LVVLKSFDAH 100
           L  +K+    
Sbjct: 323 LEKVKNIKLP 332


>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
           protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
          Length = 340

 Score = 28.2 bits (61), Expect = 0.40
 Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 27  RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNK---VWCGYKNKI 83
                  D +  +F    D +     +           + S++   +    +        
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDN-----IICGITSVSFSKSGRLLLAGYDDFNC 294

Query: 84  HVVDPKSLVVLKSFDAHPRRESQVRQMTWAGDGVW-VSIRLDSTLRMYN 131
           +V D            H   +++V  +    DG+   +   DS L+++N
Sbjct: 295 NVWDALKADRAGVLAGH---DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340


>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476
           {Pectobacterium atrosepticum [TaxId: 29471]}
          Length = 132

 Score = 26.1 bits (56), Expect = 1.5
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 39  IFRRGPDGQWDLSKYH 54
           + R+   G W  ++Y 
Sbjct: 111 LLRKSATGSWQTARYC 126


>d1sg7a1 a.239.1.1 (A:22-96) Putative cation transport regulator
           ChaB {Escherichia coli [TaxId: 562]}
          Length = 75

 Score = 25.2 bits (55), Expect = 1.6
 Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 21/74 (28%)

Query: 55  TVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLVVLKSFDAHPRRESQVRQMTWA- 113
           +V   LP H+       +N  W  YK+K    D  S            RE    ++ WA 
Sbjct: 11  SVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDAS------------REETAHKVAWAA 58

Query: 114 --------GDGVWV 119
                    D  W 
Sbjct: 59  VKHEYAKGDDDKWH 72


>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila
           melanogaster [TaxId: 7227]}
          Length = 106

 Score = 24.5 bits (53), Expect = 3.6
 Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 2/64 (3%)

Query: 76  WCGYKNKIHVVDPKSL--VVLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAH 133
           W        + +       +L     H    S +RQ+   G     SI         +  
Sbjct: 26  WTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEI 85

Query: 134 TYQH 137
            + H
Sbjct: 86  EFSH 89


>d1omha_ d.89.1.5 (A:) TrwC relaxase {Escherichia coli [TaxId: 562]}
          Length = 293

 Score = 24.5 bits (53), Expect = 6.4
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 14/81 (17%)

Query: 78  GYKNKIHVVDPKSLVVLK-------SFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLR-- 128
             + K  +    +LV+ K         D      + +  MT   DG W +++ D  ++  
Sbjct: 130 KIQGKTRIETTGNLVIGKFRHETSRERDPQLHTHAVILNMTKRSDGQWRALKNDEIVKAT 189

Query: 129 -----MYNAHTYQHLQDVDIE 144
                +YNA     LQ +  +
Sbjct: 190 RYLGAVYNAELAHELQKLGYQ 210


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.440 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,220
Number of extensions: 26468
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 16
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.4 bits)