RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16023
(416 letters)
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 373 bits (960), Expect = e-129
Identities = 145/176 (82%), Positives = 158/176 (89%)
Query: 61 PRPDVLKQHFILEGRIDETAALKIINEGATLLRSEKTMIDIEAPVTVCGDIHGQFYDLMK 120
PR DVLK HF+ EGR+ E AL+II EGA +LR E ++ IEAPVTVCGDIHGQFYDL+K
Sbjct: 1 PRIDVLKAHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLK 60
Query: 121 LFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLRGNHECRHLTEYF 180
LFEVGG PA+T+YLFLGDYVDRGYFSIECVLYLWALK+ +P TLFLLRGNHECRHLTEYF
Sbjct: 61 LFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYF 120
Query: 181 TFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIHNLDDIRKTD 236
TFKQECKIKYSERVYDACM+AFDCLPLAALMNQQFLCVHGGLSPE+ LDDIRK D
Sbjct: 121 TFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLCVHGGLSPELKTLDDIRKLD 176
Score = 76.6 bits (189), Expect = 1e-15
Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 374 KAAVLKYENNVMNIRQFNCSPHPYWLPN 401
KAAVLKYENNVMNIRQFNCSPHPYWLPN
Sbjct: 278 KAAVLKYENNVMNIRQFNCSPHPYWLPN 305
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 261 bits (670), Expect = 1e-85
Identities = 85/156 (54%), Positives = 112/156 (71%)
Query: 81 ALKIINEGATLLRSEKTMIDIEAPVTVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYV 140
L+++ E + R E ++++ APVTVCGDIHGQF DL++LF+ G P T Y+FLGDYV
Sbjct: 6 ILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDKNGQPPETNYVFLGDYV 65
Query: 141 DRGYFSIECVLYLWALKLCHPTTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMD 200
DRG FSIE +L L+ALK+ +P + LLRGNHE R + E + F ECK KY ER+Y+ +
Sbjct: 66 DRGPFSIEVILLLFALKILYPNRIVLLRGNHESRSMNEIYGFYDECKRKYGERIYEKFNE 125
Query: 201 AFDCLPLAALMNQQFLCVHGGLSPEIHNLDDIRKTD 236
AF LPLAAL+N + LC+HGGLSP++ LDDIRK
Sbjct: 126 AFSWLPLAALINGKILCMHGGLSPDLTTLDDIRKLK 161
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 221 bits (565), Expect = 1e-69
Identities = 84/149 (56%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 91 LLRSEKTMIDIEAPVTVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECV 150
+L E + + +PVTVCGDIHGQFYDL++LF VGG P T YLFLGDYVDRGY+S+E
Sbjct: 30 ILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETF 89
Query: 151 LYLWALKLCHPTTLFLLRGNHECRHLTEYFTFKQECKIKY-SERVYDACMDAFDCLPLAA 209
L L ALK+ +P + LLRGNHE R +T+ + F EC KY + V+ C D FD LPLAA
Sbjct: 90 LLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAA 149
Query: 210 LMNQQFLCVHGGLSPEIHNLDDIRKTDSK 238
L++ Q CVHGGLSP I LD IR D
Sbjct: 150 LIDNQIFCVHGGLSPSIDTLDQIRAIDRF 178
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 183 bits (467), Expect = 5e-55
Identities = 67/141 (47%), Positives = 103/141 (73%)
Query: 94 SEKTMIDIEAPVTVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYL 153
S+ ++++EAP+ +CGDIHGQ+YDL++LFE GG P + YLFLGDYVDRG S+E + L
Sbjct: 41 SQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLL 100
Query: 154 WALKLCHPTTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQ 213
A K+ +P FLLRGNHEC + + F ECK +Y+ +++ D F+CLP+AA++++
Sbjct: 101 LAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDE 160
Query: 214 QFLCVHGGLSPEIHNLDDIRK 234
+ C+HGGLSP++ +++ IR+
Sbjct: 161 KIFCMHGGLSPDLQSMEQIRR 181
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 183 bits (467), Expect = 1e-54
Identities = 76/177 (42%), Positives = 114/177 (64%), Gaps = 6/177 (3%)
Query: 66 LKQHFILEGRIDETAALKIINEGATLLRSEKTMIDIEAP----VTVCGDIHGQFYDLMKL 121
+ + F + ++ + A +I+ + LL+ ++++I P +TVCGD HGQFYDL+ +
Sbjct: 19 MIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNI 78
Query: 122 FEVGGPPASTK-YLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLRGNHECRHLTEYF 180
FE+ G P+ T YLF GD+VDRG FS+E +L L+A KL +P L RGNHE ++ + +
Sbjct: 79 FELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMY 138
Query: 181 TFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEIHNLDDIRKTD 236
F+ E K KY+E+++D + F+ LPLA L+N + L VHGGL S + LDDIRK D
Sbjct: 139 GFEGEVKAKYNEQMFDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKID 195
>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
Provisional.
Length = 303
Score = 174 bits (443), Expect = 2e-51
Identities = 82/170 (48%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 71 ILEGRIDETAALKIINEGAT-LLRSEKTMIDIEAPVTVCGDIHGQFYDLMKLFEVGGPPA 129
+L G LK+I E A + E + + APV VCGDIHGQFYDL LF+ GG
Sbjct: 10 LLNGGCLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIP 69
Query: 130 STKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLRGNHECRHLTEYFTFKQECKIK 189
+ Y+F+GD+VDRGY S+E + YL LK+ +P + LLRGNHE R T+ + F +E K
Sbjct: 70 NANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRK 129
Query: 190 Y-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIHNLDDIRKTDSK 238
Y + + MD FDCLPLAAL+ Q LCVHGGLSP++ +D IR D K
Sbjct: 130 YGNSNPWRLFMDVFDCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRK 179
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 170 bits (431), Expect = 1e-49
Identities = 77/186 (41%), Positives = 117/186 (62%), Gaps = 9/186 (4%)
Query: 49 IIADVFDTRTGKPRPDVLKQHFILEGRIDETAALKIINEGATLLRSEKTMIDIEAPVTVC 108
II + R KP +V + E + + + S+ ++++EAP+ +C
Sbjct: 14 IIERLLSVRGSKPGKNV---------NLTEAEVRGLCIKARDIFISQPILLELEAPLKIC 64
Query: 109 GDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLR 168
GD+HGQ++DL++LFE GG P + YLFLGDYVDRG S+E + L A K+ +P FLLR
Sbjct: 65 GDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 124
Query: 169 GNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIHN 228
GNHEC + + F ECK +Y+ +++ D F+CLP+AAL++++ LC+HGGLSPE+ N
Sbjct: 125 GNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAALIDEKILCMHGGLSPELSN 184
Query: 229 LDDIRK 234
L+ IR+
Sbjct: 185 LEQIRR 190
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 159 bits (403), Expect = 2e-46
Identities = 59/138 (42%), Positives = 76/138 (55%), Gaps = 11/138 (7%)
Query: 106 TVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLF 165
V GDIHG DL++L E G P + K +FLGDYVDRG S+E + L ALK+ P +
Sbjct: 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVI 59
Query: 166 LLRGNHECRHLTEYFTFKQE---------CKIKYSERVYDACMDAFDCLPLAALMNQ-QF 215
LLRGNHE L + F E K E +++ D F LPLAAL+ +
Sbjct: 60 LLRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKV 119
Query: 216 LCVHGGLSPEIHNLDDIR 233
LCVHGGLSP + + I+
Sbjct: 120 LCVHGGLSPGLPLEEQIK 137
>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
related proteins, C-terminal metallophosphatase domain.
Bsu1 encodes a nuclear serine-threonine protein
phosphatase found in plants and protozoans. Bsu1 has a
C-terminal phosphatase domain and an N-terminal
Kelch-repeat domain. Bsu1 is preferentially expressed
in elongating plant cells. It modulates the
phosphorylation state of Bes1, a transcriptional
regulator phosphorylated by the glycogen synthase kinase
Bin2, as part of a steroid hormone signal transduction
pathway. The PPP (phosphoprotein phosphatase) family,
to which Bsu1 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 311
Score = 146 bits (370), Expect = 1e-40
Identities = 65/185 (35%), Positives = 100/185 (54%), Gaps = 14/185 (7%)
Query: 62 RPDVLKQHFILEGRIDETAALKIINEGATLLRSEKTMIDIEAPVTVCGDIHGQFYDLMKL 121
+P + K + L++ + + + E ++ + AP+ + GDIHGQF DLM+L
Sbjct: 7 KPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRL 66
Query: 122 FEVGGPP--------ASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLRGNHEC 173
F+ G P YLFLGDYVDRG S+E + L ALK+ +P + L+RGNHE
Sbjct: 67 FDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHED 126
Query: 174 RHLTEYFTFKQECKIKYSERVYDACM------DAFDCLPLAALMNQQFLCVHGGLSPEIH 227
R + F F++ECK + E D F+ LPLAA++ + LC+HGG+ I+
Sbjct: 127 RDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKILCMHGGIGRSIN 186
Query: 228 NLDDI 232
++ +I
Sbjct: 187 HVSEI 191
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 143 bits (362), Expect = 8e-40
Identities = 60/157 (38%), Positives = 100/157 (63%)
Query: 76 IDETAALKIINEGATLLRSEKTMIDIEAPVTVCGDIHGQFYDLMKLFEVGGPPASTKYLF 135
I E ++ E + S+ +++I PV VCGD HGQ+YDL+++FE G P + YLF
Sbjct: 25 IREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPYSNYLF 84
Query: 136 LGDYVDRGYFSIECVLYLWALKLCHPTTLFLLRGNHECRHLTEYFTFKQECKIKYSERVY 195
LGDYVDRG S+E + + K+ +P FLLRGNHEC + + + F + K +Y+ +++
Sbjct: 85 LGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLF 144
Query: 196 DACMDAFDCLPLAALMNQQFLCVHGGLSPEIHNLDDI 232
A D F+ +P+ +++++ +C+HGGLSP++ +L +
Sbjct: 145 KAFTDVFNTMPVCCVISEKIICMHGGLSPDLTSLASV 181
>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain. PP7 is a plant
phosphoprotein phosphatase that is highly expressed in a
subset of stomata and thought to play an important role
in sensory signaling. PP7 acts as a positive regulator
of signaling downstream of cryptochrome blue light
photoreceptors. PP7 also controls amplification of
phytochrome signaling, and interacts with
nucleotidediphosphate kinase 2 (NDPK2), a positive
regulator of phytochrome signalling. In addition, PP7
interacts with heat shock transcription factor HSF and
up-regulates protective heat shock proteins. PP7 may
also play a role in salicylic acid-dependent defense
signaling. The PPP (phosphoprotein phosphatase) family,
to which PP7 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP2A, PP2B (calcineurin),
PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 377
Score = 129 bits (326), Expect = 8e-34
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 8/140 (5%)
Query: 91 LLRSEKTMIDIE----APVTVCGDIHGQFYDLMKLFEVGGPPASTK-YLFLGDYVDRGYF 145
+L E + I+ V V GD+HGQ +D++ L E G P + Y+F GDYVDRG +
Sbjct: 50 ILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAW 109
Query: 146 SIECVLYLWALKLCHPTTLFLLRGNHECRHLTEYFTFKQECKIKYSER---VYDACMDAF 202
+E L L + K+ P ++LLRGNHE + T + F+QE KY ++ VY C+ F
Sbjct: 110 GLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCLGCF 169
Query: 203 DCLPLAALMNQQFLCVHGGL 222
+ LPLA+++ + HGGL
Sbjct: 170 EGLPLASIIAGRVYTAHGGL 189
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 103 bits (258), Expect = 4e-26
Identities = 54/163 (33%), Positives = 75/163 (46%), Gaps = 28/163 (17%)
Query: 104 PVTVCGDIHGQFYDL---MKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCH 160
+ V GD+HG DL + L E+ G P LFLGD VDRG S+E + L+ALKL
Sbjct: 1 RILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA 60
Query: 161 PTTLFLLRGNHECRHLTEYFTFKQEC-------------------------KIKYSERVY 195
P ++L+RGNH+ F EC K V+
Sbjct: 61 PGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVW 120
Query: 196 DACMDAFDCLPLAALMNQQFLCVHGGLSPEIHNLDDIRKTDSK 238
+ ++ D L LAAL++ + L VHG LSP + + DDI +
Sbjct: 121 EEFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDIYLFGEE 163
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 99.8 bits (249), Expect = 2e-23
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Query: 105 VTVCGDIHGQFYDLMKLFEVGG-PPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTT 163
VT+CGD+HG+ DL +F G P Y+F GD+VDRG SIE ++ L+A L +P
Sbjct: 53 VTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNE 112
Query: 164 LFLLRGNHECRHLTEYFTFKQECKIKY---SERVYDACMDAFDCLPLAALMNQQFLCVHG 220
+ L RGNHE + + F +E KY +++ D F LPLA +++ + L VHG
Sbjct: 113 VHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILVVHG 172
Query: 221 GLSPEIHNLDDIRKTD 236
G+S + +LD + K D
Sbjct: 173 GIS-DSTDLDLLDKID 187
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 54.2 bits (131), Expect = 2e-08
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 107 VCGDIHGQFYDLMKLFE-VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLF 165
V GDIHG + L K + VG PA + + +GD +DRG S+ C L+L
Sbjct: 5 VVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLAC------LELLLEPWFH 58
Query: 166 LLRGNHEC 173
+RGNHE
Sbjct: 59 AVRGNHEQ 66
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 43.1 bits (101), Expect = 3e-05
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 107 VCGDIHGQFYDLMKLFE---VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTT 163
V DIHG L + E L LGD V G E + AL L
Sbjct: 2 VISDIHGNLEALEAVLEAALAAAEKPDF-VLVLGDLVGDGPDPEEVLAAALALLLLLGIP 60
Query: 164 LFLLRGNHE 172
++++ GNH+
Sbjct: 61 VYVVPGNHD 69
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 44.5 bits (106), Expect = 6e-05
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K+ +KK+K+K+K K KK+ + KN K
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNIGKR 425
Score = 43.0 bits (102), Expect = 2e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+KK+K+K+K K KK+ + K KP
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIGKRRKP 428
Score = 39.9 bits (94), Expect = 0.002
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK K+ +KK+K+K+K K KK+
Sbjct: 393 KKVLAKRAEKKEKEKEKPKVKKR 415
Score = 39.5 bits (93), Expect = 0.002
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+ +KK+K+K+K K KK+ +
Sbjct: 397 AKRAEKKEKEKEKPKVKKRHRDT 419
Score = 39.5 bits (93), Expect = 0.002
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+K+K K KK+ + K K++K +
Sbjct: 406 EKEKPKVKKRHRDTKNIGKRRKPS 429
Score = 39.5 bits (93), Expect = 0.003
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K+ +KK+K+K+K K KK+ +
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDT 419
Score = 39.2 bits (92), Expect = 0.003
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K+ +KK+K+K+K K KK+ K
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 39.2 bits (92), Expect = 0.003
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K+K K KK+ + K K++K
Sbjct: 407 KEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 38.8 bits (91), Expect = 0.004
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK K+ +KK+K+K+K K KK
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVKK 414
Score = 38.4 bits (90), Expect = 0.005
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KK K+ +KK+K+K+K K
Sbjct: 389 GKPSKKVLAKRAEKKEKEKEKPK 411
Score = 38.0 bits (89), Expect = 0.007
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK K+ +KK+K+K+K K K
Sbjct: 391 PSKKVLAKRAEKKEKEKEKPKVK 413
Score = 38.0 bits (89), Expect = 0.007
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KK K KK K+ +KK+K+K+ P
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKEKEKP 410
Score = 38.0 bits (89), Expect = 0.009
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KK K+ +KK+K+K+K K
Sbjct: 390 KPSKKVLAKRAEKKEKEKEKPKV 412
Score = 37.6 bits (88), Expect = 0.011
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KK K+ +KK+K+K+K
Sbjct: 388 TGKPSKKVLAKRAEKKEKEKEKPK 411
Score = 35.3 bits (82), Expect = 0.059
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK K KK K+ +KK+K+K
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEK 407
Score = 34.9 bits (81), Expect = 0.068
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K KK+ + K K++K +
Sbjct: 409 KPKVKKRHRDTKNIGKRRKPSGTS 432
Score = 33.8 bits (78), Expect = 0.16
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK K KK K+ +KK+K+
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKE 406
Score = 33.0 bits (76), Expect = 0.26
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+KK K KK K+ +KK+K KP
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKP 410
Score = 33.0 bits (76), Expect = 0.29
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KK+ + K K++K
Sbjct: 410 PKVKKRHRDTKNIGKRRKPSGTSE 433
Score = 32.6 bits (75), Expect = 0.34
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K +KK K KK K+ +KK K
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEK 407
>gnl|CDD|236911 PRK11439, pphA, serine/threonine protein phosphatase 1;
Provisional.
Length = 218
Score = 42.4 bits (100), Expect = 1e-04
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 105 VTVCGDIHGQFYDLM-KLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTT 163
+ + GDIHG F LM KL P + +GD +DRG S+ C L+L
Sbjct: 19 IWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRC------LQLLEEHW 72
Query: 164 LFLLRGNHE 172
+ +RGNHE
Sbjct: 73 VRAVRGNHE 81
>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases [Signal
transduction mechanisms].
Length = 155
Score = 41.6 bits (97), Expect = 1e-04
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 174 RHLTEYFTFKQECKIKYSERVY----DACMDAFDCLPLAALMN-QQFLCVHGGLSPEIHN 228
LT + F E KY E + ++ FD LPLAA+ + LC HGGLSP +
Sbjct: 1 MLLTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDR 60
Query: 229 LDDI 232
L DI
Sbjct: 61 LLDI 64
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal.
This domain is found to the N-terminus of bacterial
signal peptidases of the S49 family (pfam01343).
Length = 154
Score = 41.0 bits (97), Expect = 2e-04
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCL 30
+K +KK +K K K +KKK KK KP L
Sbjct: 70 AWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 28.3 bits (64), Expect = 5.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYK 27
KK+ K +K +KK +K K K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEK 87
>gnl|CDD|233082 TIGR00668, apaH, bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a
regulatory metabolite of stress conditions. It is
hydrolyzed to two ADP by this enzyme. Alternate names
include diadenosine-tetraphosphatase and Ap4A hydrolase
[Cellular processes, Adaptations to atypical
conditions].
Length = 279
Score = 42.2 bits (99), Expect = 3e-04
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 109 GDIHGQFYDLMKLFE-VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLL 167
GD+HG + +L L E V P GD V RG S+E + Y+ +L + L+
Sbjct: 7 GDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLV 62
Query: 168 RGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFD---------CLPLAAL-MNQQFLC 217
GNH+ L F + K +R+ D ++A D PL ++ +
Sbjct: 63 LGNHDLHLLA---VFAGISRNKPKDRL-DPLLEAPDADELLNWLRRQPLLQHDEEKKLVM 118
Query: 218 VHGGLSPE 225
H G++P+
Sbjct: 119 AHAGITPQ 126
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 42.6 bits (101), Expect = 3e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK+++KK +K+KKKKK+KKK KK K
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 42.3 bits (100), Expect = 3e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KKK+++KK +K+KKKKK+KKK K
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKK 407
Score = 41.1 bits (97), Expect = 9e-04
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K +K+KKKKK+KKK KK+KKK +
Sbjct: 391 KPQKRKKKKKRKKKGKKRKKKGR 413
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K+KKKKK+KKK KK+KKK +K
Sbjct: 392 PQKRKKKKKRKKKGKKRKKKGRK 414
Score = 40.7 bits (96), Expect = 0.001
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK +K+KKKKK+KKK KK+KKK
Sbjct: 390 KKPQKRKKKKKRKKKGKKRKKKG 412
Score = 40.7 bits (96), Expect = 0.001
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KKK+++KK +K+KKKKK+KKK +
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGKKRK 409
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKK+++KK +K+KKKKK+KKK
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKG 405
Score = 38.0 bits (89), Expect = 0.008
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KKK+++KK +K+KKKKK+KK
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKK 403
Score = 35.7 bits (83), Expect = 0.044
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYKP 28
K KKK+++KK +K+KKKKK+
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGK 406
Score = 34.9 bits (81), Expect = 0.063
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K+K K KKK+++KK +K+KKK K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKK 403
>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins,
metallophosphatase domain. PrpE (protein phosphatase E)
is a bacterial member of the PPP (phosphoprotein
phosphatase) family of serine/threonine phosphatases and
a key signal transduction pathway component controlling
the expression of spore germination receptors GerA and
GerK in Bacillus subtilis. PrpE is closely related to
ApaH (also known symmetrical Ap(4)A hydrolase and
bis(5'nucleosyl)-tetraphosphatase). PrpE has
specificity for phosphotyrosine only, unlike the
serine/threonine phosphatases to which it is related.
The Bacilli members of this family are single domain
proteins while the other members have N- and C-terminal
domains in addition to this phosphatase domain. The PPP
(phosphoprotein phosphatase) family, to which PrpE
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 234
Score = 41.5 bits (98), Expect = 3e-04
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 104 PVTVCGDIHGQFYDLMKLFEVGG----------PPASTKYLFLGDYVDRGYFSIECVLYL 153
P + GD+HG + +L +L E G P + +F+GD VDRG S E VL L
Sbjct: 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPE-VLRL 60
Query: 154 WALKLCHPTTLFLLRGNHECRHLTEYF 180
+ + + GNH L
Sbjct: 61 -VMSMVAAGAALCVPGNH-DNKLYRKL 85
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 41.7 bits (99), Expect = 4e-04
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCL 30
KK+ K K +KKK+K++ K K KP L
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPRL 92
Score = 33.7 bits (78), Expect = 0.15
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
K +KKK+K++ K K K K +
Sbjct: 68 AWHKAQKKKEKQEAKAAKAKSKPRLF 93
>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
metallophosphatase domain. ApaH (also known as
symmetrically cleaving Ap4A hydrolase and
bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
of the PPP (phosphoprotein phosphatase) family of
serine/threonine phosphatases that hydrolyzes the
nucleotide-signaling molecule diadenosine tetraphosphate
(Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
Gp(4)G, and other extending compounds. Null mutations
in apaH result in high intracellular levels of Ap(4)A
which correlate with multiple phenotypes, including a
decreased expression of catabolite-repressible genes, a
reduction in the expression of flagellar operons, and an
increased sensitivity to UV and heat. Ap4A hydrolase
is important in responding to heat shock and oxidative
stress via regulating the concentration of Ap4A in
bacteria. Ap4A hydrolase is also thought to play a role
in siderophore production, but the mechanism by which
ApaH interacts with siderophore pathways in unknown.
The PPP (phosphoprotein phosphatase) family, to which
ApaH belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 41.3 bits (98), Expect = 4e-04
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 109 GDIHGQFYDLMKLFE-VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLL 167
GDI G + +L +L E + PA + +GD V+RG S+E + ++ +L T L
Sbjct: 5 GDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLGDSAKTVL--- 61
Query: 168 RGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQ----------FLC 217
GNH+ L K K K + + D ++A D L + Q L
Sbjct: 62 -GNHDLHLLAVAAGIK---KPKKKDTL-DDILNAPDRDELLDWLRHQPLLHRDPELGILM 116
Query: 218 VHGGLSPE 225
VH G+ P+
Sbjct: 117 VHAGIPPQ 124
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 41.7 bits (98), Expect = 5e-04
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 105 VTVC-GDIHGQFYDLMKLF---EVGGPP---ASTKYLFLGDYVDRGYFSIECVLYLWALK 157
V +C GDIHG L L+ + P AS +FLGDY DRG + + + +L +L
Sbjct: 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLP 62
Query: 158 LCHP--TTLFLLRGNHE 172
HP +FL GNH+
Sbjct: 63 EKHPKQRHVFLC-GNHD 78
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 39.6 bits (93), Expect = 5e-04
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
KK+ K++KKK+KKKKKKK KK N
Sbjct: 85 KKRAKRQKKKQKKKKKKKAKKGN 107
Score = 39.3 bits (92), Expect = 7e-04
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK+ K++KKK+KKKKKKK KK
Sbjct: 85 KKRAKRQKKKQKKKKKKKAKKGNK 108
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KK+ K++KKK+KKKKKKK K
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKK 105
Score = 36.9 bits (86), Expect = 0.004
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K+ K++KKK+KKKKKKK KK K
Sbjct: 86 KRAKRQKKKQKKKKKKKAKKGNKK 109
Score = 35.8 bits (83), Expect = 0.012
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
+K KK+ K++KKK+KKKKKKK
Sbjct: 81 EKTAKKRAKRQKKKQKKKKKKKA 103
Score = 35.8 bits (83), Expect = 0.013
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+K KK+ K++KKK+KKKKKKK
Sbjct: 81 EKTAKKRAKRQKKKQKKKKKKKAK 104
Score = 33.9 bits (78), Expect = 0.053
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KKK+KKKKKKK KK KK++K+ +
Sbjct: 92 KKKQKKKKKKKAKKGNKKEEKEGSK 116
Score = 30.8 bits (70), Expect = 0.63
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K+KKKKKKK KK KK++K+ K+
Sbjct: 94 KQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 30.4 bits (69), Expect = 0.76
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K ++K KK+ K++KKK+KKKK
Sbjct: 77 RKDEEKTAKKRAKRQKKKQKKKK 99
Score = 30.0 bits (68), Expect = 1.0
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+K ++K KK+ K++KKK+KKK
Sbjct: 76 KRKDEEKTAKKRAKRQKKKQKKK 98
Score = 29.6 bits (67), Expect = 1.5
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK+K ++K KK+ K++KKK+KK
Sbjct: 75 KKRKDEEKTAKKRAKRQKKKQKK 97
Score = 29.2 bits (66), Expect = 2.1
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 10/34 (29%)
Query: 1 KKKKKK----------KKKKKKKKKKKKKKKKKN 24
++K+++ KK+ K++KKK+KKKKKK
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKK 102
Score = 28.9 bits (65), Expect = 2.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KKKKKKK KK KK++K+ K
Sbjct: 96 KKKKKKKAKKGNKKEEKEGSKSSE 119
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 38.6 bits (90), Expect = 6e-04
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
K KK KKKKKKKKKK K K+
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEV 36
Score = 37.8 bits (88), Expect = 0.001
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KK KKKKKKKKKK K K++
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEE 35
Score = 37.0 bits (86), Expect = 0.002
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KKKKKKKKKK K K++ +K +
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEE 44
Score = 36.6 bits (85), Expect = 0.002
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K KK KKKKKKKKKK K K
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKE 34
Score = 36.2 bits (84), Expect = 0.003
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPC 29
KKKKKKKKKK K K++ +K+ K
Sbjct: 19 VKKKKKKKKKKNKSKEEVVTEKEEEEKSS 47
Score = 35.9 bits (83), Expect = 0.004
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDT 33
KK KKKKKKKKKK K K++ + +
Sbjct: 15 KKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSS 47
Score = 35.5 bits (82), Expect = 0.005
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KKKKKKKKKK K K++
Sbjct: 14 GKKIDVKKKKKKKKKKNKSKEEV 36
Score = 35.1 bits (81), Expect = 0.009
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K K KK KKKKKKKKKKN
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKN 30
Score = 31.2 bits (71), Expect = 0.19
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYK 27
K K K KK KKKKKKKK K
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNK 31
Score = 30.9 bits (70), Expect = 0.31
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KKKKKKK K K++ +K++++K+ +
Sbjct: 23 KKKKKKKNKSKEEVVTEKEEEEKSSAE 49
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 41.5 bits (98), Expect = 7e-04
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 17/88 (19%)
Query: 100 DIEAPVTVCGDIHGQFYDLMKLFEVGG---------------PPASTKYLFLGDYVDRGY 144
D P + GD+HG +L L E G P K +F+GD VDRG
Sbjct: 177 DEHGPFDIIGDVHGCRDELETLLEELGYQIERDEGGRPVDVTHPEGRKAVFVGDLVDRGP 236
Query: 145 FSIECVLYLWALKLCHPTTLFLLRGNHE 172
S VL L + + T + GNH+
Sbjct: 237 DSPG-VLRL-VMGMVAAGTALCVPGNHD 262
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 39.3 bits (92), Expect = 7e-04
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+KK+KKKKKKKKKKK KK KK
Sbjct: 111 QKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 38.5 bits (90), Expect = 0.001
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+KK+KKKKKKKKKKK KK K
Sbjct: 110 KQKKQKKKKKKKKKKKTSKKAAK 132
Score = 38.5 bits (90), Expect = 0.001
Identities = 18/23 (78%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+KKKKKKKKKKK KK KKKK
Sbjct: 113 KQKKKKKKKKKKKTSKKAAKKKK 135
Score = 38.5 bits (90), Expect = 0.001
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K+KK+KKKKKKKKKKK KK K
Sbjct: 108 KAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 38.1 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+K K+KK+KKKKKKKKKKK K
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSK 128
Score = 38.1 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K K+KK+KKKKKKKKKKK KK
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSKK 129
Score = 37.4 bits (87), Expect = 0.004
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K+K K+KK+KKKKKKKKKKK
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAAK 132
Score = 36.2 bits (84), Expect = 0.007
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K+ K+K K+KK+KKKKKKKKKK K
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKK 129
>gnl|CDD|234673 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 40.1 bits (95), Expect = 0.001
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 109 GDIHGQFYDLMKLFE-VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLL 167
GDI G + +L +L E + PA +GD V+RG S+E + ++ +L T L
Sbjct: 7 GDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLGDSAVTVL--- 63
Query: 168 RGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDC---------LPLAA-LMNQQFLC 217
GNH+ L K + K + + D ++A D PL +
Sbjct: 64 -GNHDLHLLAVAAGIK---RNKKKDTL-DPILEAPDRDELLDWLRHQPLLHVDEELGLVM 118
Query: 218 VHGGLSP 224
VH G+ P
Sbjct: 119 VHAGIPP 125
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 39.4 bits (92), Expect = 0.001
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KKKK + K++KKKKK+KKKKK + P
Sbjct: 144 HKKKKHEDDKERKKKKKEKKKKKKRHSP 171
Score = 38.3 bits (89), Expect = 0.003
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 4/32 (12%)
Query: 1 KKKKKK----KKKKKKKKKKKKKKKKKNPYKP 28
K KKKK K++KKKKK+KKKKKK+ +P P
Sbjct: 143 KHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
Score = 37.5 bits (87), Expect = 0.005
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KKKK + K++KKKKK+KKK
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKK 164
Score = 30.6 bits (69), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K++KKKKK+KKKKKK+ +
Sbjct: 151 DDKERKKKKKEKKKKKKRHSPEHPG 175
>gnl|CDD|107154 PHA02239, PHA02239, putative protein phosphatase.
Length = 235
Score = 39.6 bits (92), Expect = 0.002
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 105 VTVCGDIHGQFYDLMKLFE--VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPT 162
+ V DIHG++ L+ + + +FLGDYVDRG S + V Y++ L
Sbjct: 3 IYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDN 62
Query: 163 TLFLLRGNHE 172
+ LL GNH+
Sbjct: 63 VVTLL-GNHD 71
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 38.9 bits (91), Expect = 0.002
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KK+KKKKK+ KK+KK+KK KK+K
Sbjct: 154 KKEKKKKKEVKKEKKEKKDKKEKMV 178
Score = 37.8 bits (88), Expect = 0.005
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KK+K + K KKKKKKKKK
Sbjct: 170 KKDKKEKMVEPKGSKKKKKKKKK 192
Score = 37.4 bits (87), Expect = 0.005
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KK+K + K KKKKKKKKKK
Sbjct: 171 KDKKEKMVEPKGSKKKKKKKKKK 193
Score = 36.2 bits (84), Expect = 0.014
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDT 33
+KKKKK+ KK+KK+KK KK+K P
Sbjct: 156 EKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Score = 35.8 bits (83), Expect = 0.019
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
++KK+KKKKK+ KK+KK+KK KK
Sbjct: 152 EEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 35.5 bits (82), Expect = 0.028
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK KK+K + K KKKKKKKK
Sbjct: 169 EKKDKKEKMVEPKGSKKKKKKKK 191
Score = 35.1 bits (81), Expect = 0.037
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+KK KK+K + K KKKKKKK
Sbjct: 168 KEKKDKKEKMVEPKGSKKKKKKK 190
Score = 34.3 bits (79), Expect = 0.056
Identities = 14/23 (60%), Positives = 21/23 (91%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+++KK+KKKKK+ KK+KK+KK K
Sbjct: 151 EEEKKEKKKKKEVKKEKKEKKDK 173
Score = 33.2 bits (76), Expect = 0.15
Identities = 13/23 (56%), Positives = 21/23 (91%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++++KK+KKKKK+ KK+KK+KK
Sbjct: 149 VEEEEKKEKKKKKEVKKEKKEKK 171
Score = 33.2 bits (76), Expect = 0.17
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++++KK+KKKKK+ KK+KK+KK K
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKM 177
Score = 32.0 bits (73), Expect = 0.36
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ ++++KK+KKKKK+ KK+KK+K K
Sbjct: 148 EVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 30.8 bits (70), Expect = 0.92
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K+ + ++++KK+KKKKK+ KK+K K
Sbjct: 145 KEAEVEEEEKKEKKKKKEVKKEKKEKKD 172
Score = 28.9 bits (65), Expect = 3.6
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+K+ + ++++KK+KKKKK+ KK+ K
Sbjct: 144 EKEAEVEEEEKKEKKKKKEVKKEKKEK 170
Score = 28.5 bits (64), Expect = 4.9
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K +K+ + ++++KK+KKKKK+ K K
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 28.5 bits (64), Expect = 5.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K +K+ + ++++KK+KKKKK+ K
Sbjct: 141 AKVEKEAEVEEEEKKEKKKKKEVKKEKK 168
Score = 28.5 bits (64), Expect = 5.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K +K+ + ++++KK+KKKKK K
Sbjct: 139 TTAKVEKEAEVEEEEKKEKKKKKEVKK 165
>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE;
Provisional.
Length = 245
Score = 38.5 bits (90), Expect = 0.003
Identities = 37/157 (23%), Positives = 57/157 (36%), Gaps = 33/157 (21%)
Query: 107 VCGDIHGQFYDLMKLFEV-------GGP--PASTKYLFLGDYVDRGYFSIECVLYLWALK 157
+ GDIHG + + L E G P P K F+GD DRG S+ + +W
Sbjct: 5 IIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWE-- 62
Query: 158 LCHPTTLFLLRGNHECRHLTEYF------------TFKQECK---IKYSERVYDACMDAF 202
L + + GNH C L +F T E + + + + +
Sbjct: 63 LVEKKAAYYVPGNH-CNKLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLY 121
Query: 203 DCLPL-AALMNQQFLCVHGGLSPEIHNLDDIRKTDSK 238
+ PL L + + H G+ D I + D K
Sbjct: 122 EQAPLYHILDEGRLVVAHAGIRQ-----DYIGRQDKK 153
>gnl|CDD|163656 cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related
proteins, metallophosphatase domain. PA3087 is an
uncharacterized protein from Pseudomonas aeruginosa with
a metallophosphatase domain that belongs to the
phosphoprotein phosphatase (PPP) family. The PPP family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 222
Score = 38.0 bits (89), Expect = 0.004
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 109 GDIHGQFYDLMKLFEVGG--------PPASTKYLFLGDYVDRGYFSIECVLYLWALKLCH 160
GDIHG L+ L G + +FLGD +DRG E + + + +
Sbjct: 5 GDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKS--MVD 62
Query: 161 PTTLFLLRGNHE 172
+ GNHE
Sbjct: 63 AGHALAVMGNHE 74
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 35.4 bits (82), Expect = 0.005
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KKKKKKKKKK + K KK
Sbjct: 24 KKKKKKKKKKAEDTAATAKAKKATA 48
Score = 34.3 bits (79), Expect = 0.014
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KKKKKKKKKK + K KK
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 33.1 bits (76), Expect = 0.038
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKKKKKKKKK + K K
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAK 44
Score = 31.6 bits (72), Expect = 0.12
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNP 25
KKKKKKKKKK +
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKA 43
Score = 31.6 bits (72), Expect = 0.14
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKN 24
KKKKKKKKKK + K
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKA 43
Score = 30.4 bits (69), Expect = 0.37
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KKKKKKKK + K KK
Sbjct: 26 KKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 28.1 bits (63), Expect = 2.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K + KKKKKKKKKK +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAA 39
Score = 27.7 bits (62), Expect = 3.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
K + KKKKKKKKKK +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAA 39
>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases,
metallophosphatase domain. This family includes
bacterial, eukaryotic, and archeal proteins orthologous
to the Shewanella cold-active protein-tyrosine
phosphatase, CAPTPase. CAPTPase is an uncharacterized
protein that belongs to the Shelph (Shewanella-like
phosphatase) family of PPP (phosphoprotein
phosphatases). The PPP family is one of two known
protein phosphatase families specific for serine and
threonine. In addition to Shelps, the PPP family also
includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6,
PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase.
The PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 208
Score = 36.1 bits (84), Expect = 0.016
Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 32/142 (22%)
Query: 109 GDIHGQFYDLMKLFE-----------VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALK 157
GD+HG ++ + +GG ST + LGD DRG IE + L+ L+
Sbjct: 4 GDLHGDLDAFREILKGAGVIDSNDHWIGG---STHLVQLGDIFDRGPDVIEILWLLYKLE 60
Query: 158 LCHPT---TLFLLRGNHECR---------HLTEYFTFKQECKIK---YSERVYDACMDAF 202
+ L GNHE H + F + +S
Sbjct: 61 QEAAKAGGKVHFLLGNHELMNLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRW--L 118
Query: 203 DCLPLAALMNQQFLCVHGGLSP 224
P+ +N L VHGGL P
Sbjct: 119 RSKPVIVKVN-DTLFVHGGLGP 139
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 37.0 bits (86), Expect = 0.019
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+ K KK KKKKKKKKK++K +
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLD 293
Score = 36.7 bits (85), Expect = 0.024
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKN 24
K KK KKKKKKKKK++K
Sbjct: 273 VKFKKPKKKKKKKKKRRKDLDE 294
Score = 28.6 bits (64), Expect = 6.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK++KKK+ ++KK +K+K+
Sbjct: 99 KKRQKKKEAERKKALLLDEKEKER 122
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 34.8 bits (80), Expect = 0.021
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+++ KK KKK++KKKKKKK KN
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKN 122
Score = 32.5 bits (74), Expect = 0.12
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++ KK KKK++KKKKKKK K
Sbjct: 101 RQAKKLKKKREKKKKKKKGAKNL 123
Score = 32.1 bits (73), Expect = 0.16
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ KK KKK++KKKKKKK K
Sbjct: 102 QAKKLKKKREKKKKKKKGAKNLA 124
Score = 29.4 bits (66), Expect = 1.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYK 27
+++ KK KKK++KKKKKK K
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAK 121
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 35.7 bits (83), Expect = 0.023
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
KK+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 35.7 bits (83), Expect = 0.023
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKK 23
KK+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 34.2 bits (79), Expect = 0.071
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 1 KKKKK--KKKKKKKKKKKKKKKKKKNPYK 27
KK+++ KK+K KK KKKKK KKK
Sbjct: 178 KKREENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 33.4 bits (77), Expect = 0.14
Identities = 9/24 (37%), Positives = 22/24 (91%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+++K++++K +KK+K+K+ KKK++
Sbjct: 11 RRRKREQRKARKKQKRKEAKKKED 34
Score = 31.9 bits (73), Expect = 0.46
Identities = 9/23 (39%), Positives = 21/23 (91%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++++K++++K +KK+K+K+ KKK
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKK 32
Score = 31.1 bits (71), Expect = 0.75
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K++++K +KK+K+K+ KKK+
Sbjct: 13 RKREQRKARKKQKRKEAKKKEDA 35
Score = 31.1 bits (71), Expect = 0.78
Identities = 8/23 (34%), Positives = 21/23 (91%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+++++K++++K +KK+K+K+ KK
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKK 31
Score = 30.7 bits (70), Expect = 1.0
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Query: 1 KKKKKKKKK-----KKKKKKKKKKKKKKNPYK 27
KKK +++KK KK+K KK KKKKK K
Sbjct: 171 KKKAERQKKREENLKKRKDDKKNKKKKKAKKK 202
Score = 30.4 bits (69), Expect = 1.2
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK K+K+K+KKK KK+ K++K+
Sbjct: 145 KKALKRKEKQKKKSKKEWKERKEK 168
Score = 30.4 bits (69), Expect = 1.5
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++++K +KK+K+K+ KKK+ +K
Sbjct: 15 REQRKARKKQKRKEAKKKEDAQK 37
Score = 30.4 bits (69), Expect = 1.5
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K++++K +KK+K+K+ KKK+ +
Sbjct: 14 KREQRKARKKQKRKEAKKKEDAQ 36
Score = 29.6 bits (67), Expect = 2.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 1 KKKKKKKKKK-----KKKKKKKKKKKKKNPYKP 28
+KKK +++KK KK+K KK KKKK K
Sbjct: 170 EKKKAERQKKREENLKKRKDDKKNKKKKKAKKK 202
Score = 29.6 bits (67), Expect = 2.3
Identities = 7/23 (30%), Positives = 20/23 (86%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
+++++K++++K +KK+K+K+ K
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKK 31
Score = 29.6 bits (67), Expect = 2.3
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 8/31 (25%)
Query: 1 KKKKKKKKKKKKK--------KKKKKKKKKK 23
K+K+K+KKK KK+ +KKK +++KK
Sbjct: 149 KRKEKQKKKSKKEWKERKEKVEKKKAERQKK 179
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 33.8 bits (78), Expect = 0.024
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLT 31
K+K + KKKKK+K KKK++ P T
Sbjct: 38 KQKADEGNNSGKKKKKRKAKKKRDEAGPAST 68
Score = 32.2 bits (74), Expect = 0.10
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPG 39
+++K+ K+K + KKKKK+ K +
Sbjct: 32 QEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGPASTAA 70
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 34.1 bits (78), Expect = 0.029
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 34.1 bits (78), Expect = 0.029
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKK 23
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.7 bits (77), Expect = 0.043
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKN 24
K KKKKKK KK KK KK KK+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.1 bits (65), Expect = 1.6
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 7 KKKKKKKKKKKKKKKKKNPYK 27
K KKKKKK KK KK KK+ K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 34.6 bits (80), Expect = 0.030
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+ +K+K+ +K ++KK K+++K+K
Sbjct: 106 RAEKEKRTRKNREKKFKRRQKEKE 129
Score = 33.8 bits (78), Expect = 0.049
Identities = 9/23 (39%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K+K+ +K ++KK K+++K+K+K
Sbjct: 108 EKEKRTRKNREKKFKRRQKEKEK 130
Score = 32.6 bits (75), Expect = 0.11
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K++ +K+K+ +K ++KK K+++K K
Sbjct: 104 KERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 32.6 bits (75), Expect = 0.12
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ K++ +K+K+ +K ++KK K++
Sbjct: 102 RTKERAEKEKRTRKNREKKFKRR 124
Score = 32.2 bits (74), Expect = 0.15
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++ K++ +K+K+ +K ++KK K+
Sbjct: 101 ERTKERAEKEKRTRKNREKKFKR 123
Score = 31.5 bits (72), Expect = 0.29
Identities = 8/30 (26%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 1 KKK---KKKKKKKKKKKKKKKKKKKKNPYK 27
KK+ + ++++ K++ +K+K+ +KN K
Sbjct: 90 KKRRIALRLRRERTKERAEKEKRTRKNREK 119
Score = 31.1 bits (71), Expect = 0.36
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++++ K++ +K+K+ +K ++KK
Sbjct: 98 LRRERTKERAEKEKRTRKNREKK 120
Score = 31.1 bits (71), Expect = 0.42
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+++ K++ +K+K+ +K ++KK K
Sbjct: 100 RERTKERAEKEKRTRKNREKKFK 122
Score = 29.9 bits (68), Expect = 0.89
Identities = 5/27 (18%), Positives = 19/27 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ ++++ K++ +K+K+ +K ++ +K
Sbjct: 96 LRLRRERTKERAEKEKRTRKNREKKFK 122
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 34.1 bits (79), Expect = 0.033
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ K ++++K K+KKKKKKK+ +N Y+
Sbjct: 68 RNKAAEERRKLKEKKKKKKKELENFYR 94
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 35.3 bits (82), Expect = 0.033
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
K+KKK K++KK K++K+K + PY CL D
Sbjct: 98 KEKKKAMSKEEKKAIKEEKEKLEEPYGYCLVD 129
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 35.8 bits (83), Expect = 0.034
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K K++ KKKK K+ K K KK
Sbjct: 253 KSKEEIKKKKPKESKGVKALKKVVA 277
Score = 31.9 bits (73), Expect = 0.55
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KKKK K+ K K KK K K
Sbjct: 259 KKKKPKESKGVKALKKVVAKGMKK 282
Score = 31.1 bits (71), Expect = 1.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+K K++ KKKK K+ K K K
Sbjct: 251 KRKSKEEIKKKKPKESKGVKALK 273
Score = 31.1 bits (71), Expect = 1.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
++ KKKK K+ K K KK K
Sbjct: 256 EEIKKKKPKESKGVKALKKVVAKG 279
Score = 30.8 bits (70), Expect = 1.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
+KK+K K++ KKKK K+ K K K
Sbjct: 249 EKKRKSKEEIKKKKPKESKGVKALKK 274
Score = 30.4 bits (69), Expect = 1.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK+K K++ KKKK K+ K K
Sbjct: 250 KKRKSKEEIKKKKPKESKGVKAL 272
Score = 30.0 bits (68), Expect = 2.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK+K K++ KKKK K+ K K
Sbjct: 249 EKKRKSKEEIKKKKPKESKGVKA 271
Score = 29.2 bits (66), Expect = 3.4
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKKK K+ K K KK K
Sbjct: 258 IKKKKPKESKGVKALKKVVAKGM 280
Score = 28.8 bits (65), Expect = 5.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ +KK+K K++ KKKK K+ K K
Sbjct: 247 RAEKKRKSKEEIKKKKPKESKGVKALKK 274
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 35.2 bits (82), Expect = 0.035
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
K+KKK K++KK K++K K + PY CL D
Sbjct: 99 KEKKKAMSKEEKKAIKEEKDKLEEPYGYCLVD 130
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 35.0 bits (81), Expect = 0.044
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ KKKK+ K K K+ KKKKK
Sbjct: 82 ERLKKKKRVKTKAYKEPTKKKKKKDPTA 109
Score = 34.7 bits (80), Expect = 0.066
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ KKKK+ K K K+ KKKKKK+P
Sbjct: 83 RLKKKKRVKTKAYKEPTKKKKKKDPTAA 110
Score = 34.3 bits (79), Expect = 0.072
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KKKK+ K K K+ KKKKKK K
Sbjct: 85 KKKKRVKTKAYKEPTKKKKKKDPTAAKS 112
Score = 33.1 bits (76), Expect = 0.17
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KKK+ K K K+ KKKKKK P
Sbjct: 86 KKKRVKTKAYKEPTKKKKKKDPTAAKSP 113
Score = 30.8 bits (70), Expect = 1.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 1 KKKKKKK----KKKKKKKKKKKKKKKKNPYKPCLTD 32
KKKKKK K K + KKK ++ + P L D
Sbjct: 100 KKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLD 135
Score = 30.4 bits (69), Expect = 1.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+++++ KKKK+ K K K+ KK K
Sbjct: 79 QREERLKKKKRVKTKAYKEPTKKKKKKD 106
Score = 29.3 bits (66), Expect = 2.9
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K+ KKKKKK K K P K
Sbjct: 96 KEPTKKKKKKDPTAAKSPKAAAPRPKKK 123
Score = 28.5 bits (64), Expect = 5.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K+ K K K+ KKKKKK K
Sbjct: 88 KRVKTKAYKEPTKKKKKKDPTAAKSPKA 115
Score = 28.1 bits (63), Expect = 6.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+K+ +++++ KKKK+ K K K P K
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKK 101
Score = 28.1 bits (63), Expect = 7.5
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 1 KKKKKKKKKKKKKKKKKKKKK 21
+ ++KK + K +K+K+KKK+K
Sbjct: 161 EIRRKKIQAKARKRKEKKKEK 181
Score = 28.1 bits (63), Expect = 7.5
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 2 KKKKKKKKKKKKKKKKKKKKK 22
+ ++KK + K +K+K+KKK+K
Sbjct: 161 EIRRKKIQAKARKRKEKKKEK 181
Score = 28.1 bits (63), Expect = 7.5
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 3 KKKKKKKKKKKKKKKKKKKKK 23
+ ++KK + K +K+K+KKK+K
Sbjct: 161 EIRRKKIQAKARKRKEKKKEK 181
Score = 28.1 bits (63), Expect = 7.5
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
K+++ ++KK + K +K+K+KKK+
Sbjct: 158 KEREIRRKKIQAKARKRKEKKKEKEL 183
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain.
This presumed domain is found at the N-terminus of
Ribosomal L30 proteins and has been termed RL30NT or
NUC018.
Length = 71
Score = 32.6 bits (75), Expect = 0.045
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK+K+ +K + K+ KK+ KK
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAAR 27
Score = 32.6 bits (75), Expect = 0.045
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K + K+ KK+ KK +KKK+K
Sbjct: 11 KLRAKRAKKRAAKKAARKKKRKLI 34
Score = 31.4 bits (72), Expect = 0.095
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K+ KK+ KK +KKK+K K
Sbjct: 14 AKRAKKRAAKKAARKKKRKLIFKRA 38
Score = 30.3 bits (69), Expect = 0.24
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K+ +K + K+ KK+ KK +KK
Sbjct: 7 KRNEKLRAKRAKKRAAKKAARKKK 30
Score = 29.1 bits (66), Expect = 0.62
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK+ KK +KKK+K K+ +K
Sbjct: 18 KKRAAKKAARKKKRKLIFKRAEK 40
Score = 28.3 bits (64), Expect = 1.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK+K+ +K + K+ KK+ KK
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKK 24
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 34.5 bits (80), Expect = 0.046
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
KKK KK KK+K+K++K+ +K +
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADD 37
Score = 34.1 bits (79), Expect = 0.067
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 32.7 bits (75), Expect = 0.057
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 1 KKKKKKKKKKKKKKKKKKKK----KKK 23
++ ++KKKKKKK KKK K +KK
Sbjct: 35 ISQRNRRKKKKKKKLKKKSKEWILRKK 61
Score = 29.2 bits (66), Expect = 0.83
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K ++ ++ ++KKKKKKK KKK
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKS 53
Score = 29.2 bits (66), Expect = 0.83
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
K ++ ++ ++KKKKKKK KKK+
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKS 53
Score = 28.0 bits (63), Expect = 2.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 7/31 (22%)
Query: 1 KKKKKKKKKKKKKKK----KKK---KKKKKN 24
++KKKKKKK KKK K +KK +++ K
Sbjct: 40 RRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor
involved in ribosome biogenesis.
Length = 112
Score = 33.2 bits (76), Expect = 0.060
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTL 34
KKK++KKK K+ +K++K++KK +TDTL
Sbjct: 48 KKKQRKKKPKRLTRKQRKRQKKGLERAEIVTDTL 81
Score = 30.5 bits (69), Expect = 0.49
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKK++KKK K+ +K++K++KK
Sbjct: 47 SKKKQRKKKPKRLTRKQRKRQKK 69
Score = 29.0 bits (65), Expect = 1.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKK++KKK K+ +K++K++K
Sbjct: 46 VSKKKQRKKKPKRLTRKQRKRQK 68
Score = 27.5 bits (61), Expect = 5.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
KKK++KKK K+ +K++K++
Sbjct: 46 VSKKKQRKKKPKRLTRKQRKRQK 68
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 35.2 bits (82), Expect = 0.068
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K KK K +K K Y
Sbjct: 824 LADAPAKDPAGKKAAVKFSRKTKQQYV 850
Score = 33.2 bits (77), Expect = 0.26
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK K +K K++ +K K
Sbjct: 835 KKAAVKFSRKTKQQYVASEKDGK 857
Score = 32.5 bits (75), Expect = 0.55
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K +K K++ +K K
Sbjct: 836 KAAVKFSRKTKQQYVASEKDGKA 858
Score = 32.1 bits (74), Expect = 0.68
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK K +K K++ + K
Sbjct: 831 DPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 31.7 bits (73), Expect = 0.75
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KK K +K K++
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVAS 852
Score = 31.7 bits (73), Expect = 0.88
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KK K +K K++
Sbjct: 829 AKDPAGKKAAVKFSRKTKQQYVA 851
Score = 31.3 bits (72), Expect = 1.1
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
+ K KK K +K
Sbjct: 822 RYLADAPAKDPAGKKAAVKFSRKTK 846
Score = 29.0 bits (66), Expect = 5.3
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K + K KK K
Sbjct: 819 EKLRYLADAPAKDPAGKKAAVKF 841
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 34.2 bits (79), Expect = 0.080
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K KK K K ++K+K K++K+
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKE 77
Score = 33.9 bits (78), Expect = 0.11
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLF 35
K KK K K ++K+K K++K++ + DT
Sbjct: 56 AKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPE 90
Score = 33.1 bits (76), Expect = 0.20
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K KKKK K K K + Y
Sbjct: 202 KGGKKKKGKAKAKLNVGGANDDDDDYD 228
Score = 32.3 bits (74), Expect = 0.40
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAK 214
Score = 31.9 bits (73), Expect = 0.50
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
K K +K K KKKK K K K N
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAKLN 216
Score = 31.2 bits (71), Expect = 0.74
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKN 24
K K KK K K ++K+K K++
Sbjct: 55 KAKAKKALKAKIEEKEKAKREK 76
Score = 30.8 bits (70), Expect = 0.95
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
+K K +K K KKKK K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKL 215
Score = 30.8 bits (70), Expect = 0.95
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K K KK K K ++K+K K
Sbjct: 51 KVAAKAKAKKALKAKIEEKEKAK 73
Score = 30.8 bits (70), Expect = 1.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K K K KK K K ++K+K
Sbjct: 49 KAKVAAKAKAKKALKAKIEEKEK 71
Score = 30.8 bits (70), Expect = 1.1
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K +K K KKKK K K K
Sbjct: 196 KAEKAAKGGKKKKGKAKAKLNVGGAND 222
Score = 30.8 bits (70), Expect = 1.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K KK K K ++K+K K+
Sbjct: 52 VAAKAKAKKALKAKIEEKEKAKR 74
Score = 30.0 bits (68), Expect = 1.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+K+++K K K K KK K K
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIE 67
Score = 30.0 bits (68), Expect = 1.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++K+++K K K K KK K K
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAK 65
Score = 30.0 bits (68), Expect = 2.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
++K K K K KK K K ++K
Sbjct: 47 EEKAKVAAKAKAKKALKAKIEEKE 70
Score = 29.2 bits (66), Expect = 3.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+++K K K K KK K K ++
Sbjct: 46 EEEKAKVAAKAKAKKALKAKIEE 68
Score = 28.5 bits (64), Expect = 5.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++K+++K K K K KK K
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKA 64
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 33.9 bits (78), Expect = 0.088
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K KKKK K K KK KK K +K K
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKDEKE 117
Score = 33.5 bits (77), Expect = 0.12
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KKKK KKKK K K KK KK +
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDD 108
Score = 33.1 bits (76), Expect = 0.14
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+K K KKKK KKKK K K KK
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKD 103
Score = 33.1 bits (76), Expect = 0.14
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K KKKK KKKK K K KK K
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKK 106
Score = 33.1 bits (76), Expect = 0.16
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+K+K K KKKK KKKK K K KK+
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKD 103
Score = 32.7 bits (75), Expect = 0.18
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KKKK KKKK K K KK KK+
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 32.0 bits (73), Expect = 0.31
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K K KKKK KKKK K K KK
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDD 104
Score = 31.6 bits (72), Expect = 0.42
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKKK KKKK K K KK KK K
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDK 109
Score = 31.6 bits (72), Expect = 0.44
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KKK K K KK KK K +KK + +
Sbjct: 93 KKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 31.6 bits (72), Expect = 0.48
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
+K+K K KKKK KKKK K K K
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKD 103
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K K KK KK K +KK +K+ ++
Sbjct: 97 KDKDKKDDKKDDKSEKKDEKEAEDK 121
Score = 28.9 bits (65), Expect = 3.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KK KK K +KK +K+ + K
Sbjct: 99 KDKKDDKKDDKSEKKDEKEAEDKL 122
Score = 28.5 bits (64), Expect = 4.2
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK+ ++K+K K KKKK KKKK K+
Sbjct: 75 KKEYEEKQKWKWKKKKSKKKKDKD 98
Score = 28.5 bits (64), Expect = 5.2
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K KK+ ++K+K K KKKK KKKK+ K
Sbjct: 73 KVKKEYEEKQKWKWKKKKSKKKKDKDK 99
Score = 27.7 bits (62), Expect = 9.4
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK K +KK +K+ + K + Y
Sbjct: 104 DKKDDKSEKKDEKEAEDKLEDLTKSYSE 131
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein
7 (Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal
RNA recognition motif (RRM), also termed RBD (RNA
binding domain) or RNP (ribonucleoprotein domain), and
a C-terminal RRP7 domain.
Length = 118
Score = 32.6 bits (75), Expect = 0.11
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
++ + K K+K+KKKKKKK+ ++ Y+
Sbjct: 68 EEAVEAKAKEKEKKKKKKKELEDFYR 93
Score = 28.8 bits (65), Expect = 2.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
++ + K K+K+KKKKKKK+ +
Sbjct: 68 EEAVEAKAKEKEKKKKKKKELE 89
Score = 28.4 bits (64), Expect = 3.0
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 1 KKKKKKK------KKKKKKKKKKKKKKKK 23
+ +K K + K K+K+KKKKKKK
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKK 86
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast)
and GNL3L (human) are putative GTPases which are
required for growth and play a role in processing of
nucleolar pre-rRNA. This family contains a potential
nuclear localisation signal.
Length = 80
Score = 31.5 bits (72), Expect = 0.12
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
+ + K +KK + +K +K+ KKNP
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNP 25
Score = 31.1 bits (71), Expect = 0.16
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 1 KKKKKKKKKKKKKKKKK----KKKKKKNP 25
+KK + +K +K+ KK K KKKK+P
Sbjct: 7 EKKVAEHHRKLRKEAKKNPTWKSKKKKDP 35
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 33.3 bits (76), Expect = 0.13
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KKKK K KK K K KK + KKK
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.0 bits (65), Expect = 3.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 6 KKKKKKKKKKKKKKKKKKNPYK 27
KKKK K KK K K KK ++ K
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKK 112
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 33.4 bits (77), Expect = 0.14
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+K+K ++++K K K +KK+K KP
Sbjct: 127 EKEKAPRRERKPKPKAPRKKRKPRAQKP 154
Score = 33.4 bits (77), Expect = 0.15
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+K ++++K K K +KK+K + +P
Sbjct: 129 EKAPRRERKPKPKAPRKKRKPRAQKPEP 156
Score = 33.0 bits (76), Expect = 0.20
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK++ +K+K ++++K K K P K
Sbjct: 119 AKKREAAGEKEKAPRRERKPKPKAPRKK 146
Score = 32.2 bits (74), Expect = 0.38
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+K+K ++++K K K +KK+K +
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRKPRAQK 153
Score = 31.8 bits (73), Expect = 0.43
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ ++ +++ KK++ +K+K + KP
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPRRERKP 138
Score = 30.7 bits (70), Expect = 0.96
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ +++ KK++ +K+K +++ KP
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKP 140
Score = 30.7 bits (70), Expect = 0.96
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ KK++ +K+K ++++K K +
Sbjct: 118 QAKKREAAGEKEKAPRRERKPKPKAPRK 145
Score = 30.3 bits (69), Expect = 1.3
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK++ +K+K ++++K K K K
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKR 147
Score = 29.9 bits (68), Expect = 1.8
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ KK++ +K+K ++++K K
Sbjct: 117 QQAKKREAAGEKEKAPRRERKPKPKAPR 144
Score = 29.9 bits (68), Expect = 1.8
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ +K+K ++++K K K +K
Sbjct: 123 EAAGEKEKAPRRERKPKPKAPRKKRKPR 150
Score = 29.9 bits (68), Expect = 1.9
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDT 33
++++K K K +KK+K + +K P ++D
Sbjct: 132 PRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164
Score = 29.9 bits (68), Expect = 2.1
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+++ KK++ +K+K ++++K P P
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAP 143
Score = 29.9 bits (68), Expect = 2.1
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ +K+K ++++K K K + KP
Sbjct: 122 REAAGEKEKAPRRERKPKPKAPRKKRKP 149
Score = 28.7 bits (65), Expect = 4.7
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+++ KK++ +K+K ++++K K
Sbjct: 115 AEQQAKKREAAGEKEKAPRRERKPKPKA 142
Score = 28.4 bits (64), Expect = 6.2
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTL 34
+++K K K +KK+K + +K + L
Sbjct: 134 RERKPKPKAPRKKRKPRAQKPEPQHTPVSDISEL 167
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is
a small protein module with a triple-stranded
beta-sheet fold. This is a family of WW domain binding
proteins.
Length = 78
Score = 31.5 bits (72), Expect = 0.14
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KKK+ KK K +++ +++ K KKNP
Sbjct: 15 KKKELKKNKAERQARREAKLAKKNP 39
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 33.9 bits (77), Expect = 0.19
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKL 48
KK KKK+KK+K+K++ K KKK+ L L SP ++
Sbjct: 200 KKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEAD 246
Score = 33.5 bits (76), Expect = 0.19
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPC 29
KK K KKKK++K+K++KKKKKK+ + C
Sbjct: 275 KKSPKHKKKKQRKEKEEKKKKKKHHHHRC 303
Score = 33.5 bits (76), Expect = 0.20
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCL 30
KK KKK+KK+K+K++ K KKK+ +K L
Sbjct: 200 KKPKKKEKKEKEKERDKDKKKEVEGFKSLL 229
Score = 33.1 bits (75), Expect = 0.28
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KK KKK+KK+K+K++ K KK
Sbjct: 197 KKSKKPKKKEKKEKEKERDKDKK 219
Score = 33.1 bits (75), Expect = 0.28
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K KK KKK+KK+K+K++ K KKK
Sbjct: 198 KSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 32.7 bits (74), Expect = 0.39
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVP 41
+KK KK KKK+KK+K+K++ K K L P
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSP 236
Score = 31.2 bits (70), Expect = 1.00
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
K KKKK++K+K++KKKKKK +
Sbjct: 279 KHKKKKQRKEKEEKKKKKKHHHHRCH 304
Score = 29.3 bits (65), Expect = 4.7
Identities = 7/24 (29%), Positives = 21/24 (87%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+++ +K K++KKK++K+K+ ++++
Sbjct: 91 RQRLEKDKREKKKREKEKRGRRRH 114
Score = 29.3 bits (65), Expect = 5.1
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ +K K++KKK++K+K+ +++ +
Sbjct: 92 QRLEKDKREKKKREKEKRGRRRHHSLGT 119
Score = 28.5 bits (63), Expect = 9.0
Identities = 7/23 (30%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+++ +++ +K K++KKK++K+K+
Sbjct: 87 ERRHRQRLEKDKREKKKREKEKR 109
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 32.4 bits (74), Expect = 0.20
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+K++K+ K+ ++K+ K KK+K K
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKE 123
Score = 30.9 bits (70), Expect = 0.76
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+ ++K+ K KK+KK+KK+KK
Sbjct: 103 SKETEEKEAIKAKKEKKEKKEKK 125
Score = 30.1 bits (68), Expect = 1.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+K+ K+ ++K+ K KK+KK+K K
Sbjct: 99 QKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 30.1 bits (68), Expect = 1.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
++K+ K+ ++K+ K KK+KK+ K
Sbjct: 98 EQKEVSKETEEKEAIKAKKEKKEKKEK 124
Score = 29.3 bits (66), Expect = 1.9
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++K+ K KK+KK+KK+KK +K
Sbjct: 107 EEKEAIKAKKEKKEKKEKKVAEK 129
Score = 27.8 bits (62), Expect = 7.2
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 1 KKKKKKKKKKKKKKKKK--KKKKKKN 24
K+ K KK+KK+KK+KK +K KK
Sbjct: 109 KEAIKAKKEKKEKKEKKVAEKLAKKK 134
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein
7 homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 31.9 bits (73), Expect = 0.22
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+K+ K +K+KKKKKKK+ KN Y+
Sbjct: 66 RKESVAAKAAEKEKKKKKKKELKNFYR 92
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 31.0 bits (71), Expect = 0.23
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYK 27
+KKK+KK+ K + K+ KK +
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLE 84
Score = 31.0 bits (71), Expect = 0.27
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKK 20
+KKK+KK+ K + K+ KK
Sbjct: 61 RKKKEKKEVKAESKRYNAKK 80
Score = 31.0 bits (71), Expect = 0.27
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 2 KKKKKKKKKKKKKKKKKKKK 21
+KKK+KK+ K + K+ KK
Sbjct: 61 RKKKEKKEVKAESKRYNAKK 80
Score = 31.0 bits (71), Expect = 0.27
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 3 KKKKKKKKKKKKKKKKKKKK 22
+KKK+KK+ K + K+ KK
Sbjct: 61 RKKKEKKEVKAESKRYNAKK 80
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 33.4 bits (77), Expect = 0.23
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+K +KK++++KK+KKKK KK +
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEE 444
Score = 32.2 bits (74), Expect = 0.59
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK KK +K +KK++++KK+KKK +
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFA 436
Score = 31.4 bits (72), Expect = 0.97
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KK++++KK+KKKK KKK+++
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEE 445
Score = 31.4 bits (72), Expect = 0.99
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K +K +KK++++KK+KKKK K
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKE 441
Score = 31.4 bits (72), Expect = 1.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KK +K +KK++++KK+KK
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKK 431
Score = 31.0 bits (71), Expect = 1.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KK KK +K +KK++++KK
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKK 428
Score = 30.7 bits (70), Expect = 1.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KK KK +K +KK++++K
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEK 427
Score = 30.7 bits (70), Expect = 1.6
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K++++KK+KKKK KKK++++
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEE 446
Score = 30.3 bits (69), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KK KK +K +KK++++KK+
Sbjct: 407 KATKKIKKIVEKAEKKREEEKKE 429
Score = 30.3 bits (69), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KK +K +KK++++KK+K
Sbjct: 408 ATKKIKKIVEKAEKKREEEKKEK 430
Score = 30.3 bits (69), Expect = 2.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KK KK +K +KK++++
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEE 426
Score = 30.3 bits (69), Expect = 2.2
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
+KK+KKKK KKK+++++++K
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEK 450
Score = 29.9 bits (68), Expect = 2.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+KKKK KKK+++++++K+KK K
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKEEEKE 456
Score = 29.5 bits (67), Expect = 3.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K+KKKK KKK+++++++K+K
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKE 452
Score = 29.1 bits (66), Expect = 5.2
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++KK+KKKK KKK+++++++
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEE 447
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 32.4 bits (74), Expect = 0.25
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KKK + K +K+ K+K +KK
Sbjct: 4 KKKNRSSNYKVNRKRLKRKDRKKKI 28
Score = 32.0 bits (73), Expect = 0.32
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+KKKK + K +K+ K+K +
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRK 25
Score = 31.6 bits (72), Expect = 0.39
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K + K +K+ K+K +KKK N
Sbjct: 6 KNRSSNYKVNRKRLKRKDRKKKINIIG 32
Score = 31.6 bits (72), Expect = 0.42
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KK + K +K+ K+K +KKK
Sbjct: 5 KKNRSSNYKVNRKRLKRKDRKKKIN 29
Score = 31.3 bits (71), Expect = 0.49
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYKP 28
+KKKK + K +K+ K+K+ K
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKK 27
Score = 28.9 bits (65), Expect = 3.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
K +K+ K+K +KKK NP
Sbjct: 11 NYKVNRKRLKRKDRKKKINIIGNP 34
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 32.7 bits (75), Expect = 0.26
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K + ++++ KKKKKKKKKK KKN
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKN 195
Score = 31.9 bits (73), Expect = 0.45
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K + ++++ KKKKKKKKKK KK N
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNN 196
Score = 30.0 bits (68), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPS 45
K + ++++ KKKKKKKKKK K + S VP S
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELS 215
Score = 30.0 bits (68), Expect = 1.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KKKKKKKKKK KK +
Sbjct: 182 KKKKKKKKKKTKKNNATGSSAEATV 206
Score = 29.6 bits (67), Expect = 2.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
++++ KKKKKKKKKK KK +
Sbjct: 177 EEERAKKKKKKKKKKTKKNNATGSS 201
Score = 28.9 bits (65), Expect = 4.6
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPC 29
KKKKKKKKK KK +
Sbjct: 183 KKKKKKKKKTKKNNATGSSAEATVSSAVP 211
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 32.4 bits (74), Expect = 0.34
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
+K K K KK KK
Sbjct: 190 TASSGDEKSPKSKAAPKKAGKKM 212
Score = 31.6 bits (72), Expect = 0.71
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
+K K K KK KK
Sbjct: 190 TASSGDEKSPKSKAAPKKAGKK 211
Score = 30.5 bits (69), Expect = 1.6
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K K K KK KK +K
Sbjct: 192 SSGDEKSPKSKAAPKKAGKKMRK 214
Score = 29.7 bits (67), Expect = 2.5
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYK 27
+K K K KK K K
Sbjct: 190 TASSGDEKSPKSKAAPKKAGKKMRK 214
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 31.9 bits (73), Expect = 0.34
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KK K K+ +K + KKKKKK NP
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKKDDNP 109
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 32.6 bits (75), Expect = 0.35
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK++K +KK +K++ +K KKK
Sbjct: 416 KKQRKAEKKAEKEEAEKAAAKKKA 439
Score = 31.4 bits (72), Expect = 1.0
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK++K +KK +K++ +K KK
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKK 437
Score = 31.4 bits (72), Expect = 1.0
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
++KK +KK++K +KK +K++ +K
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKA 433
Score = 31.1 bits (71), Expect = 1.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK +KK++K +KK +K++ +K
Sbjct: 412 KKLRKKQRKAEKKAEKEEAEKAA 434
Score = 30.3 bits (69), Expect = 1.9
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
+KK++K +KK +K++ +K K
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKK 438
Score = 29.9 bits (68), Expect = 3.1
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K +KK++K +KK +K++ +K
Sbjct: 413 KLRKKQRKAEKKAEKEEAEKAAAK 436
Score = 29.5 bits (67), Expect = 3.4
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++KK +KK++K +KK +K++ +
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAE 431
Score = 29.1 bits (66), Expect = 5.5
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++KK +KK++K +KK +K++
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEA 430
Score = 28.7 bits (65), Expect = 6.9
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++K +KK +K++ +K KKK +
Sbjct: 418 QRKAEKKAEKEEAEKAAAKKKAE 440
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 32.1 bits (73), Expect = 0.40
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+K K +KK KK K K K K K K KP
Sbjct: 86 EKPKPEKKPKKPKPKPKPKPKPKPKVKP 113
Score = 31.7 bits (72), Expect = 0.53
Identities = 15/47 (31%), Positives = 16/47 (34%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQK 47
K K K K K K K K K + K K P PPS
Sbjct: 96 KPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAA 142
Score = 31.3 bits (71), Expect = 0.76
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K +KK KK K K K K K K K +P
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Score = 30.9 bits (70), Expect = 0.94
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K+K K +KK KK K K K K K P
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKP 109
Score = 29.8 bits (67), Expect = 2.5
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K KK K K K K K K K K + P KP
Sbjct: 93 KPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Score = 29.8 bits (67), Expect = 2.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K+K K +KK KK K K K K K K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKV 111
Score = 29.4 bits (66), Expect = 3.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K K+K K +KK KK K K K K P
Sbjct: 83 KPKEKPKPEKKPKKPKPKPKPKPKP 107
Score = 28.6 bits (64), Expect = 6.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
+KK KK K K K K K K K K P
Sbjct: 91 EKKPKKPKPKPKPKPKPKPKVKPQP 115
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 32.9 bits (75), Expect = 0.41
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K K KKK K K KK KK+ Y P
Sbjct: 763 KAAKTVKKKSKAKSKKTTKKRAGPLYTP 790
Score = 32.5 bits (74), Expect = 0.44
Identities = 14/38 (36%), Positives = 14/38 (36%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSP 38
KK K K K KKK K K K K SP
Sbjct: 755 KKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPLYTPSP 792
Score = 30.9 bits (70), Expect = 1.3
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKL 48
KK K KKK K K K KKK+ K T G + PS L
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKK--RAGPLYTPSPAL 794
Score = 29.8 bits (67), Expect = 3.4
Identities = 15/49 (30%), Positives = 16/49 (32%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLI 49
K K KKK K K K KKK T P P +I
Sbjct: 750 KTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPLYTPSPALAAMI 798
>gnl|CDD|217754 pfam03836, RasGAP_C, RasGAP C-terminus.
Length = 139
Score = 31.1 bits (71), Expect = 0.42
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK K+K KK +KK KK K YK
Sbjct: 92 KKFSKQKFSVKKLQKKHGKKPKFGSYK 118
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 32.5 bits (74), Expect = 0.46
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK K KKK KK KKK+ K+ K+
Sbjct: 147 KKGKAKKKTKKSKKKEAKESSDKD 170
Score = 31.3 bits (71), Expect = 0.86
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNP 25
+ K KK K KKK KK KKK+
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKE 165
Score = 31.3 bits (71), Expect = 1.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ K KK K KKK KK KKK+ K
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSD 168
Score = 31.0 bits (70), Expect = 1.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KK K KKK KK KKK+ K+
Sbjct: 144 TKAKKGKAKKKTKKSKKKEAKES 166
Score = 31.0 bits (70), Expect = 1.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+ K KK K KKK KK KKK+ K++
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKES 166
Score = 30.6 bits (69), Expect = 1.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK K KKK KK KKK+ K+
Sbjct: 146 AKKGKAKKKTKKSKKKEAKESSD 168
Score = 30.6 bits (69), Expect = 1.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KK K KKK KK KKK+ K+
Sbjct: 145 KAKKGKAKKKTKKSKKKEAKESS 167
Score = 30.6 bits (69), Expect = 1.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K K KKK KK KKK+ K+ K +
Sbjct: 148 KGKAKKKTKKSKKKEAKESSDKDDE 172
Score = 28.6 bits (64), Expect = 7.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KKK KK KKK+ K+ K +
Sbjct: 150 KAKKKTKKSKKKEAKESSDKDDEE 173
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 31.9 bits (73), Expect = 0.48
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
K++KK K++KK K +K+K + Y C+ D
Sbjct: 98 KEEKKAMSKEEKKAIKAEKEKLEEEYGFCILD 129
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 32.2 bits (73), Expect = 0.50
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K+++K+K++ K++KKKKK+K K+ P
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDR 131
Score = 31.8 bits (72), Expect = 0.76
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K+++K+K++ K++KKKKK+K K K
Sbjct: 103 GKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Score = 31.8 bits (72), Expect = 0.77
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
+ K+++K+K++ K++KKKKK+ P
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKP 124
Score = 30.6 bits (69), Expect = 1.5
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K + K+++K+K++ K++KKKKK
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKK 121
Score = 30.2 bits (68), Expect = 1.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
K+K++ K++KKKKK+K K++ K K +
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKE 139
Score = 30.2 bits (68), Expect = 1.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+KKKKK+K K++ K +K K++ K P
Sbjct: 116 EKKKKKEKPKEEPKDRKPKEEAKEKRPP 143
Score = 30.2 bits (68), Expect = 2.4
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K++ K+K+ K+K+K+K+KK ++
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPR 158
Score = 29.9 bits (67), Expect = 2.7
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++K+K++ K++KKKKK+K K++ KP
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKP 133
Score = 29.9 bits (67), Expect = 2.7
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K + K+++K+K++ K++KKKK
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKK 120
Score = 29.9 bits (67), Expect = 2.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K + K+++K+K++ K++KKK KP
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKP 124
Score = 29.1 bits (65), Expect = 5.0
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K+ K + K+++K+K++ K++KK +
Sbjct: 96 KEPKNESGKEEEKEKEQVKEEKKKKKEK 123
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
dehydrogenase/3-phosphoshikimate
1-carboxyvinyltransferase; Provisional.
Length = 673
Score = 32.0 bits (72), Expect = 0.62
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 86 NEGATLLRSEKTMIDIEAPVTVCGDIHGQFYD--LMKLFEVGGPPASTKYLFLGDYVDRG 143
NEG LR I ++AP+ V GD+ QF LM L V ++ G+ + +
Sbjct: 381 NEGFPPLRIRPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGASVVEIDGELISKP 440
Query: 144 YFSI 147
Y I
Sbjct: 441 YIEI 444
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein
7 (Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 30.7 bits (70), Expect = 0.63
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYK 27
K +++KK+K+KKKKKKK+ ++ Y+
Sbjct: 72 KAAEEEKKEKEKKKKKKKELEDFYR 96
Score = 27.2 bits (61), Expect = 7.4
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 1 KKKKKKKKKKKKKKKKKKKKK 21
K +++KK+K+KKKKKKK+ +
Sbjct: 72 KAAEEEKKEKEKKKKKKKELE 92
Score = 27.2 bits (61), Expect = 7.4
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 2 KKKKKKKKKKKKKKKKKKKKK 22
K +++KK+K+KKKKKKK+ +
Sbjct: 72 KAAEEEKKEKEKKKKKKKELE 92
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 29.9 bits (68), Expect = 0.65
Identities = 6/24 (25%), Positives = 18/24 (75%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K++K+++K +++++ K+ K K+
Sbjct: 1 KERKEEEKAQREEELKRLKNLKRE 24
Score = 29.2 bits (66), Expect = 1.4
Identities = 5/23 (21%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K+++K +++++ K+ K K+++
Sbjct: 3 RKEEEKAQREEELKRLKNLKREE 25
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 30.9 bits (70), Expect = 0.69
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLII 50
+ + K + K+KKK++ K K KP T P P P KL I
Sbjct: 112 EDPPETKTESKEKKKREVPKPKTEKEKP-KT-----EPKKPKPSKPKLYI 155
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 31.4 bits (71), Expect = 0.69
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
K+KKK + K++KK K++K K+ PY C+ D
Sbjct: 95 KEKKKSRTKEEKKALKEEKDKEAEPYMWCVWD 126
>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family. Members of this family are
short proteins that are rich in aspartate, glutamate,
lysine and arginine. Although the function of these
proteins is unknown, they are found to be ubiquitously
expressed.
Length = 38
Score = 28.3 bits (64), Expect = 0.74
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
KK KKKKK K + K K
Sbjct: 16 KKAAKKKKKGAKSQLKAAAKALE 38
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 30.7 bits (70), Expect = 0.75
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K+ K K++K+++ ++K+K+ K
Sbjct: 126 KELAKLKREKRRENERKQKEILKE 149
Score = 29.2 bits (66), Expect = 2.4
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ +K+ K K++K+++ ++K+K
Sbjct: 122 ELLEKELAKLKREKRRENERKQK 144
Score = 28.0 bits (63), Expect = 5.1
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K++K+++ ++K+K+ K++
Sbjct: 128 LAKLKREKRRENERKQKEILKEQ 150
Score = 27.6 bits (62), Expect = 6.7
Identities = 6/24 (25%), Positives = 17/24 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K++K+++ ++K+K+ K++
Sbjct: 129 AKLKREKRRENERKQKEILKEQMK 152
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 31.6 bits (72), Expect = 0.76
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K K ++ KK++ + ++KKK+K
Sbjct: 362 TKAKPERDKKERPGRYRRKKKEKKA 386
Score = 31.2 bits (71), Expect = 1.1
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K ++ KK++ + ++KKK
Sbjct: 360 PPTKAKPERDKKERPGRYRRKKKEKKA 386
Score = 29.7 bits (67), Expect = 2.8
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ KK++ + ++KKK+KK K ++
Sbjct: 368 RDKKERPGRYRRKKKEKKAKSER 390
Score = 29.7 bits (67), Expect = 3.1
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
++ + ++KKK+KK K +++ +N
Sbjct: 372 ERPGRYRRKKKEKKAKSERRGLQN 395
Score = 29.7 bits (67), Expect = 3.3
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK++ + ++KKK+KK K +++
Sbjct: 369 DKKERPGRYRRKKKEKKAKSERR 391
Score = 29.3 bits (66), Expect = 4.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK++ + ++KKK+KK K +++
Sbjct: 370 KKERPGRYRRKKKEKKAKSERRG 392
Score = 28.5 bits (64), Expect = 6.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K ++ KK++ + ++KKK+KK K
Sbjct: 365 KPERDKKERPGRYRRKKKEKKAK 387
Score = 28.5 bits (64), Expect = 6.9
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K++ + ++KKK+KK K +++
Sbjct: 371 KERPGRYRRKKKEKKAKSERRGL 393
Score = 28.1 bits (63), Expect = 8.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNP 25
+ KK++ + ++KKK+KK K
Sbjct: 368 RDKKERPGRYRRKKKEKKAKSER 390
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 30.3 bits (69), Expect = 0.77
Identities = 10/23 (43%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+KK+++K++K++ K++KKK K
Sbjct: 107 KEKKEEEKERKRQLKQQKKKAKH 129
Score = 29.9 bits (68), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 10/33 (30%)
Query: 1 KKKKKKKKKKKKK----------KKKKKKKKKK 23
K++KKK+ K+KK K++KKK K +
Sbjct: 98 NKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 29.5 bits (67), Expect = 1.5
Identities = 9/22 (40%), Positives = 20/22 (90%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
++ K++KKK+ K+KK+++K++K
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERK 117
Score = 29.5 bits (67), Expect = 1.5
Identities = 9/22 (40%), Positives = 20/22 (90%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKK 23
++ K++KKK+ K+KK+++K++K
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERK 117
>gnl|CDD|185511 PTZ00199, PTZ00199, high mobility group protein; Provisional.
Length = 94
Score = 29.8 bits (67), Expect = 0.77
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 6 KKKKKKKKKKKKKKKKKKNPYKP 28
KK+ K +K K+KKK+P P
Sbjct: 1 MAKKQGKVLVRKNKRKKKDPNAP 23
Score = 27.5 bits (61), Expect = 5.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLF 35
KK+ K +K K+KKK N K L+ +F
Sbjct: 1 MAKKQGKVLVRKNKRKKKDPNAPKRALSAYMF 32
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 30.7 bits (69), Expect = 0.78
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKN 24
KKKK+K +KK K KKK++K N
Sbjct: 27 KKKKEKVSEKKGKSKKKEEKPN 48
Score = 29.2 bits (65), Expect = 2.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
K KKKK+K +KK K KKK++ P
Sbjct: 24 KSDKKKKEKVSEKKGKSKKKEEKP 47
Score = 29.2 bits (65), Expect = 2.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KKKK+K +KK K KKK++K
Sbjct: 24 KSDKKKKEKVSEKKGKSKKKEEK 46
Score = 27.6 bits (61), Expect = 6.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYKP 28
K KKKK+K +KK K KK KP
Sbjct: 24 KSDKKKKEKVSEKKGKSKKKEEKP 47
Score = 27.6 bits (61), Expect = 8.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KKK+K +KK K KKK++K K P
Sbjct: 28 KKKEKVSEKKGKSKKKEEKPNGKIP 52
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 31.2 bits (71), Expect = 0.79
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ K K K K K K KK +++ K KP
Sbjct: 96 EPKPKPKPKPKPKPVKKVEEQPKREVKP 123
Score = 31.2 bits (71), Expect = 0.82
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K K K KK +++ K++ K + P P
Sbjct: 104 KPKPKPVKKVEEQPKREVKPVEPRPASP 131
Score = 28.1 bits (63), Expect = 7.6
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K K K K K K KK +++ K+
Sbjct: 97 PKPKPKPKPKPKPVKKVEEQPKREVKPV 124
Score = 28.1 bits (63), Expect = 9.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K K K K K KK +++ K++ P +P
Sbjct: 100 KPKPKPKPKPVKKVEEQPKREVKPVEP 126
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 28.7 bits (65), Expect = 0.80
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K +K+K+KK +K+++KK +
Sbjct: 40 KPSEKRKRKKAAARKRRRKKLARE 63
Score = 28.3 bits (64), Expect = 1.3
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 4 KKKKKKKKKKKKKKKKKKKKN 24
K+K+KK +K+++KK ++
Sbjct: 44 KRKRKKAAARKRRRKKLAREE 64
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 31.2 bits (71), Expect = 0.82
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
+K+K KK KK KK+K+K++P
Sbjct: 225 RKRKAPKKVAKKVAAAKKRKQKRSP 249
Score = 31.2 bits (71), Expect = 0.82
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
K+K KK KK KK+K+K+ P +
Sbjct: 226 KRKAPKKVAKKVAAAKKRKQKRSPPPPFNMVS 257
Score = 29.3 bits (66), Expect = 3.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKPCLT 31
+K+K KK KK KK+K+K P
Sbjct: 225 RKRKAPKKVAKKVAAAKKRKQKRSPPPPFN 254
>gnl|CDD|150240 pfam09495, DUF2462, Protein of unknown function (DUF2462). This
protein is highly conserved, but its function is
unknown. It can be isolated from HeLa cell nucleoli and
is found to be homologous with Leydig cell tumour
protein whose function is unknown.
Length = 82
Score = 29.3 bits (66), Expect = 0.83
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYKP 28
K K K K KKK+K P K
Sbjct: 4 GALKVKAKGPAAVKAGKKKQKGPKKA 29
Score = 27.4 bits (61), Expect = 3.6
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K K K KKK+K KK KP
Sbjct: 9 KAKGPAAVKAGKKKQKGPKKAGPRVIKP 36
>gnl|CDD|188899 cd09500, SAM_AIDA1AB-like_repeat2, SAM domain of AIDA1AB-like
proteins, repeat 2. SAM (sterile alpha motif) domain
repeat 2 of AIDA1AB-like proteins is a protein-protein
interaction domain. AIDA1AB-like proteins have two
tandem SAM domains. They may form an intramolecular
head-to-tail homodimer. One of two basic motifs of the
nuclear localization signal (NLS) is located within
helix 5 of the SAM2 (motif HKRK). This signal plays a
role in decoupling of SAM2 from SAM1, thus facilitating
translocation of this type proteins into the nucleus.
SAM domains of the AIDA1AB-like subfamily can directly
bind ubiquitin and participate in regulating the
degradation of ubiquitinated EphA receptors,
particularly EPH-A8 receptor. Additionally AIDA1AB-like
proteins may participate in the regulation of
nucleoplasmic coilin protein interactions.
Length = 65
Score = 28.8 bits (65), Expect = 0.91
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 136 LGDYVDR----GYFSIECVLYLWALKL 158
LGDY++ GY S+E V +W ++L
Sbjct: 17 LGDYIETFLKHGYTSMERVKRIWEVEL 43
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 29.9 bits (68), Expect = 0.91
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K+K K +KK+++KK + +K K +
Sbjct: 19 KEKAKWEKKQEEKKSEAEKLAKMSA 43
Score = 29.1 bits (66), Expect = 1.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+K K +KK+++KK + +K K
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAK 40
Score = 27.2 bits (61), Expect = 8.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K+K K +KK+++KK + +K
Sbjct: 15 KAIAKEKAKWEKKQEEKKSEAEK 37
Score = 27.2 bits (61), Expect = 9.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
K+K K +KK+++KK + +K
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAK 40
Score = 26.8 bits (60), Expect = 9.5
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+K K ++K + + +K +K+
Sbjct: 35 AEKLAKMSAEEKAEYELEKLEKEL 58
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 31.3 bits (71), Expect = 0.96
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
++ K++ +KK+K KKK +K+K NP
Sbjct: 347 DEESKEEVEKKQKVKKKPRKRKVNP 371
Score = 29.8 bits (67), Expect = 3.0
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ K++ +KK+K KKK +K+K P
Sbjct: 346 DDEESKEEVEKKQKVKKKPRKRK--VNP 371
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 29.1 bits (66), Expect = 1.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K++++K KKK KK + ++ KKK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKV 92
Score = 27.2 bits (61), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+++K KKK KK + ++ KKK
Sbjct: 71 ERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 30.1 bits (68), Expect = 1.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KK KK K KK K KK+K + +
Sbjct: 9 KKAKKAAKAAKKGVKVKKRKVRTSV 33
Score = 30.1 bits (68), Expect = 1.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KKK KK K KK K KK+K
Sbjct: 6 KAKKKAKKAAKAAKKGVKVKKRK 28
Score = 29.3 bits (66), Expect = 2.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKK KK K KK K KK+K
Sbjct: 7 AKKKAKKAAKAAKKGVKVKKRKV 29
Score = 28.9 bits (65), Expect = 2.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KKK KK K KK K KK+
Sbjct: 5 KKAKKKAKKAAKAAKKGVKVKKR 27
Score = 28.9 bits (65), Expect = 3.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKK KK K KK K KK+K +
Sbjct: 8 KKKAKKAAKAAKKGVKVKKRKVR 30
Score = 28.9 bits (65), Expect = 3.1
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KKK KK K KK K KK
Sbjct: 4 AKKAKKKAKKAAKAAKKGVKVKK 26
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4;
Provisional.
Length = 191
Score = 30.5 bits (69), Expect = 1.1
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KKKK +KKK KK KKKKK+ P
Sbjct: 51 SKKKKTTPRKKKTTKKTKKKKKEKEEVP 78
Score = 29.8 bits (67), Expect = 1.9
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK KKKK +KKK KK KKK K
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKE 75
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 28.2 bits (63), Expect = 1.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
KK KKK ++KKKK KKK+K
Sbjct: 6 KKIAKKKPGTEQKKKKSAKKKRKPKL 31
Score = 27.4 bits (61), Expect = 2.0
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 1 KKKKKKKKKK-----KKKKKKKKKKKKKNP 25
KK KK KKK KKKK KKK+K K P
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPKLP 32
Score = 27.0 bits (60), Expect = 3.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
+KKKK KKK+K K K P
Sbjct: 17 QKKKKSAKKKRKPKLPKNFNPVVTP 41
Score = 26.6 bits (59), Expect = 4.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYKP 28
+KKKK KKK+K K K NP
Sbjct: 17 QKKKKSAKKKRKPKLPKNFNPVVT 40
Score = 25.9 bits (57), Expect = 8.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K KKK ++KKKK KKK+K K
Sbjct: 7 KIAKKKPGTEQKKKKSAKKKRKPKLPK 33
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 29.7 bits (67), Expect = 1.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KKK+KK + + KK KK+
Sbjct: 79 KKKRKKSRHVSSRSAKKISAKKRR 102
Score = 28.5 bits (64), Expect = 2.9
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KKK+KK + + KK KK
Sbjct: 79 KKKRKKSRHVSSRSAKKISAKKRRRSS 105
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 31.2 bits (71), Expect = 1.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK+KKK+K+K++ K + KK+
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEK 650
Score = 30.4 bits (69), Expect = 1.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK+KKK+K+K++ K + KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRK 652
Score = 30.4 bits (69), Expect = 2.1
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSP------------GVPFPPSQKLI 49
K K K K KKKKKK+K L D +PF QK +
Sbjct: 522 KAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDDEEDEDDEELPFLFKQKDL 581
Query: 50 IADVF 54
I + F
Sbjct: 582 IKEAF 586
Score = 29.3 bits (66), Expect = 4.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKK+K+K++ K + KK+K+K
Sbjct: 630 KKKRKRKRRFLTKIEGVKKEKRK 652
Score = 29.3 bits (66), Expect = 5.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 7 KKKKKKKKKKKKKKKKKNPYKP 28
KK+KKK+K+K++ K K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKK 648
Score = 28.9 bits (65), Expect = 5.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K+K+K++ K + KK+K+K K
Sbjct: 632 KRKRKRRFLTKIEGVKKEKRKDKK 655
Score = 28.9 bits (65), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 1 KKKKKKKKKKKK--KKKKKKKKKKKN 24
+K+K++ K + KK+K+K KK KN
Sbjct: 633 RKRKRRFLTKIEGVKKEKRKDKKLKN 658
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 30.6 bits (69), Expect = 1.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KK KK + K K K KK KKK
Sbjct: 148 KKPKKGQSPKVPKAPKPKKPKKKGS 172
Score = 30.6 bits (69), Expect = 1.6
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK KK + K K K KK KK
Sbjct: 147 VKKPKKGQSPKVPKAPKPKKPKKKGSVS 174
Score = 28.7 bits (64), Expect = 6.1
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K K K KK KKK + K P
Sbjct: 157 KVPKAPKPKKPKKKGSVSNRSVKMPGID 184
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 30.9 bits (70), Expect = 1.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYKP 28
+ +KK K K KK +K KK K
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKT 794
Score = 30.1 bits (68), Expect = 2.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK K K KK +K KK K
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAK 793
Score = 30.1 bits (68), Expect = 2.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ +KK K K KK +K KK K
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQK 796
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 29.6 bits (67), Expect = 1.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTL 34
K +K +KK K++ + +K++ +K KP L + L
Sbjct: 38 KSEKLEKKAKRQLRAEKRQALEKGRVKPVLPEDL 71
Score = 29.3 bits (66), Expect = 2.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
KK K KKK K +K +KK K++
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQ 49
Score = 29.3 bits (66), Expect = 2.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKK 23
KK K KKK K +K +KK K++
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQ 49
Score = 28.9 bits (65), Expect = 2.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ KK K KKK K +K +KK K+
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKR 48
Score = 28.9 bits (65), Expect = 2.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KKK K +K +KK K++ + +K+
Sbjct: 33 AKKKLKSEKLEKKAKRQLRAEKRQ 56
Score = 28.1 bits (63), Expect = 5.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KKK K +K +KK K++ + +K
Sbjct: 32 KAKKKLKSEKLEKKAKRQLRAEK 54
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 28.5 bits (64), Expect = 1.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K+KKK K + KK +K+ K KK P
Sbjct: 30 KQKKKNKLRFLKKLEKRPKDVKKGP 54
>gnl|CDD|218611 pfam05499, DMAP1, DNA methyltransferase 1-associated protein 1
(DMAP1). DNA methylation can contribute to
transcriptional silencing through several
transcriptionally repressive complexes, which include
methyl-CpG binding domain proteins (MBDs) and histone
deacetylases (HDACs). The chief enzyme that maintains
mammalian DNA methylation, DNMT1, can also establish a
repressive transcription complex. The non-catalytic
amino terminus of DNMT1 binds to HDAC2 and DMAP1 (for
DNMT1 associated protein), and can mediate
transcriptional repression. DMAP1 has intrinsic
transcription repressive activity, and binds to the
transcriptional co-repressor TSG101. DMAP1 is targeted
to replication foci through interaction with the far N
terminus of DNMT1 throughout S phase, whereas HDAC2
joins DNMT1 and DMAP1 only during late S phase,
providing a platform for how histones may become
deacetylated in heterochromatin following replication.
Length = 175
Score = 29.8 bits (67), Expect = 1.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFP 43
+K++KK KKK +K K K + +T G+ FP
Sbjct: 46 RKREKKLPKKKIPQKPGPSKEDSKVNVPET----AGIKFP 81
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 28.4 bits (64), Expect = 1.7
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KKKK KK KK +KKKK KK
Sbjct: 30 KKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 27.2 bits (61), Expect = 3.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KKKK KK KK +KKKK K
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 30.5 bits (69), Expect = 1.7
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSP 38
K+ K + KKK +KKKKKKK+KK P T F +P
Sbjct: 59 KEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTP 96
Score = 29.7 bits (67), Expect = 2.9
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 9/41 (21%)
Query: 1 KKKKKKKKKKKK---------KKKKKKKKKKKNPYKPCLTD 32
KKKKKK+KK+ K K KK KK KK P KP +
Sbjct: 73 KKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNE 113
Score = 29.7 bits (67), Expect = 3.3
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 1 KKKKKKKKKKKKKK--------KKKKKKKKKNPYKPCLTDT 33
KKKKKKK+KK+ K K KK KK P
Sbjct: 72 KKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPN 112
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 30.0 bits (68), Expect = 1.7
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KKKKKKK KKKK KK K
Sbjct: 182 KKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 28.8 bits (65), Expect = 4.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
++KKKKKKK KKKK KK
Sbjct: 180 EEKKKKKKKSAKKKKLKKVAAV 201
Score = 28.8 bits (65), Expect = 4.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKK 23
++KKKKKKK KKKK KK
Sbjct: 180 EEKKKKKKKSAKKKKLKKVAAV 201
Score = 28.4 bits (64), Expect = 5.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
+++KKKKKKK KKKK KK
Sbjct: 177 NAEEEKKKKKKKSAKKKKLKKVA 199
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 30.2 bits (68), Expect = 1.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K KK KK KK KK K KK K
Sbjct: 247 KAAKKAKKTAKKALKKAAKAVKKAAKKA 274
Score = 29.9 bits (67), Expect = 2.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK KK KK KK K KK K K
Sbjct: 250 KKAKKTAKKALKKAAKAVKKAAKKAAKA 277
Score = 29.5 bits (66), Expect = 3.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK K KK KK K K K K
Sbjct: 261 KKAAKAVKKAAKKAAKAAAKAAKGAAKA 288
Score = 29.1 bits (65), Expect = 4.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK K K KK KK KK K
Sbjct: 236 VSAKKAAKTAAKAAKKAKKTAKKALKKA 263
Score = 29.1 bits (65), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K KK KK K KK KK K K
Sbjct: 254 KTAKKALKKAAKAVKKAAKKAAKAAAK 280
Score = 28.7 bits (64), Expect = 5.2
Identities = 11/28 (39%), Positives = 11/28 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK K K KK KKK K K
Sbjct: 213 KKASAKAKSAAKKVSKKKAAKTAVSAKK 240
Score = 27.9 bits (62), Expect = 9.1
Identities = 10/28 (35%), Positives = 10/28 (35%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK KKK K KK K K
Sbjct: 221 SAAKKVSKKKAAKTAVSAKKAAKTAAKA 248
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 30.6 bits (70), Expect = 1.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKN 24
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
Score = 29.8 bits (68), Expect = 3.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPY 26
+K++ KKKKK+KK KK + +
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
Score = 29.8 bits (68), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 1 KKKKKKKKKKKKKKKKKKKKK 21
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.8 bits (68), Expect = 3.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 2 KKKKKKKKKKKKKKKKKKKKK 22
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated.
Length = 128
Score = 29.0 bits (66), Expect = 1.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 11 KKKKKKKKKKKKKN 24
KKKK KKK KKN
Sbjct: 1 AKKKKTVKKKVKKN 14
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 28.0 bits (63), Expect = 1.9
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K+KK +K K+ K +++ +++ Y
Sbjct: 34 KRKKYEKAVKRLKSQRRVVREEDGGYG 60
Score = 27.6 bits (62), Expect = 3.0
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 1 KKKKK------KKKKKKKKKKKKKKKKKKNPYKP 28
+K+KK KK+KK +K K+ K ++ +
Sbjct: 21 RKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVRE 54
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 28.5 bits (64), Expect = 2.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK++KK K K KKKK
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKK 26
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 30.6 bits (69), Expect = 2.1
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KKKKKKK K+KKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 30.2 bits (68), Expect = 2.2
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPY 26
+KKKKKKK K+KKKKK ++ K +
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQIH 708
Score = 29.1 bits (65), Expect = 5.5
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 6 KKKKKKKKKKKKKKKKKKNPYK 27
+KKKKKKK K+KKKKK + K
Sbjct: 684 RKKKKKKKSKEKKKKKNREASK 705
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 30.4 bits (69), Expect = 2.2
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K+ K++K+ +K KK+++KKKK
Sbjct: 559 EKEALKEQKRLRKLKKQEEKKKK 581
Score = 30.0 bits (68), Expect = 2.9
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K+ K++K+ +K KK+++KKKK+
Sbjct: 560 KEALKEQKRLRKLKKQEEKKKKEL 583
Score = 28.5 bits (64), Expect = 7.6
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K++K+ +K KK+++KKKK+ +K
Sbjct: 563 LKEQKRLRKLKKQEEKKKKELEK 585
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 29.7 bits (67), Expect = 2.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPC 29
KK+ +K KK KKK K+K +
Sbjct: 53 KKRPTTPRKPATTKKSKKKDKEKLTEEEK 81
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 30.3 bits (68), Expect = 2.4
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KKKKKK K KKK KK K
Sbjct: 240 KSKKKKKKLAKNKKKLDDDKKGK 262
Score = 29.2 bits (65), Expect = 4.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
++K KKKKKK K KKK KK
Sbjct: 238 EEKSKKKKKKLAKNKKKLDDDKKGK 262
Score = 29.2 bits (65), Expect = 4.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKKKKK K KKK KK K+
Sbjct: 241 SKKKKKKLAKNKKKLDDDKKGKR 263
>gnl|CDD|221161 pfam11661, DUF2986, Protein of unknown function (DUF2986). This
family of proteins has no known function.
Length = 44
Score = 26.9 bits (60), Expect = 2.6
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
KK +K KKK KK K K Y
Sbjct: 5 KKINQKLKKKAKKANAKLHPSNKPKY 30
Score = 26.1 bits (58), Expect = 4.1
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+KKK +K KKK KK K N KP
Sbjct: 3 RKKKINQKLKKKAKKANAKLHPSN--KP 28
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 30.0 bits (68), Expect = 2.7
Identities = 13/55 (23%), Positives = 15/55 (27%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLIIADVFD 55
K KKK K + KK +KKN V D D
Sbjct: 87 AAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDD 141
Score = 29.2 bits (66), Expect = 4.8
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKK K K K KKK K
Sbjct: 76 KKKTKTAAKAAAAKAPAKKKLKD 98
Score = 28.8 bits (65), Expect = 5.8
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K KKK K + KK
Sbjct: 84 KAAAAKAPAKKKLKDELDSSKKA 106
Score = 28.8 bits (65), Expect = 6.1
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K KKK K + KK
Sbjct: 83 AKAAAAKAPAKKKLKDELDSSKK 105
Score = 28.8 bits (65), Expect = 6.7
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK K K K KKK K +
Sbjct: 77 KKTKTAAKAAAAKAPAKKKLKDE 99
Score = 28.4 bits (64), Expect = 9.0
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KKK K + KK +K
Sbjct: 86 AAAKAPAKKKLKDELDSSKKAEKK 109
Score = 28.0 bits (63), Expect = 9.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
KKK K K K KKK K+
Sbjct: 76 KKKTKTAAKAAAAKAPAKKKLKDE 99
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 29.6 bits (67), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+++ KK K KKKK K K K YK
Sbjct: 206 LQRELMKKGKGKKKKIVKDKDGKVVYK 232
Score = 28.5 bits (64), Expect = 6.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK K KKKK K K K K K K
Sbjct: 212 KKGKGKKKKIVKDKDGKVVYKWKKERK 238
Score = 27.7 bits (62), Expect = 9.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKKK K K K K KK++K+
Sbjct: 217 KKKKIVKDKDGKVVYKWKKERKR 239
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 29.6 bits (67), Expect = 2.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
K+K++ KK+KKKK KK K NP
Sbjct: 356 KRKREGDKKQKKKKSKKLKLTFNP 379
Score = 29.6 bits (67), Expect = 2.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYKP 28
K+K++ KK+KKKK KK K + P
Sbjct: 356 KRKREGDKKQKKKKSKKLKLTFNP 379
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 28.8 bits (65), Expect = 2.9
Identities = 7/24 (29%), Positives = 22/24 (91%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
++K+++K+++K++K++K++K+K
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKE 37
Score = 27.7 bits (62), Expect = 6.3
Identities = 6/27 (22%), Positives = 20/27 (74%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ ++K+++K+++K++K++K+ K
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEK 36
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 29.7 bits (67), Expect = 2.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KKKKKKKKK K+ + KK +
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFM 35
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 28.8 bits (65), Expect = 2.9
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ K + KKK + K+ P +P
Sbjct: 108 RVAANDAIKAEAKKKGELPSTKRQPAQP 135
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 29.4 bits (66), Expect = 3.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYKPCLT 31
++ K+KKKKK KKKK K+ +T
Sbjct: 86 NQENKQKKKKKDKKKKSPKSLLLNFVT 112
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 29.7 bits (67), Expect = 3.0
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KKKKKKKKK KK K KK K
Sbjct: 255 VKKKKKKKKKVVHKKYKTKKLTGKQRKA 282
Score = 29.3 bits (66), Expect = 3.8
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYK 27
K KKKKKKKKK KK K KK K
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGK 278
Score = 28.5 bits (64), Expect = 6.7
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
K KKKKKKKKK KK K KK
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLT 276
Score = 28.5 bits (64), Expect = 7.4
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 1 KKKKKKKKKKKKKKKKKKKKK 21
K KKKKKKKKK KK K KK
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKK 274
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 29.2 bits (66), Expect = 3.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 69 HFILEGRIDETAALKIINEGATL 91
HF L+ R+ E A +II EG L
Sbjct: 147 HFFLQKRVGENKAKQIIWEGKKL 169
>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein.
Length = 193
Score = 29.0 bits (66), Expect = 3.3
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 2 KKKKKKKKKKKKKKKKK--KKKKKNPYKPCL 30
++K K +K +++ K K+ NP CL
Sbjct: 43 QEKYKDDPQKLQQEMMKLYKEHGVNPLAGCL 73
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 29.3 bits (66), Expect = 3.4
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYKPCL---TDTLFCSPGVPFPPSQKLIIADVFDTRTG 59
+KKK + KKK K KK + + L SP + ++ +T
Sbjct: 153 AEKKKPRSKKKSSKNSKKLRIDLVGEWLSTAISPPDSSPVSLDAREKLRAYLPKWEGKTK 212
Score = 27.7 bits (62), Expect = 9.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKK 23
+KKK + KKK K KK +
Sbjct: 153 AEKKKPRSKKKSSKNSKKLRID 174
>gnl|CDD|204670 pfam11508, DUF3218, Protein of unknown function (DUF3218). This
family of proteins with unknown function appears to be
restricted to Pseudomonas.
Length = 213
Score = 29.2 bits (65), Expect = 3.4
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 36 CSPGVPFPPSQKLIIADVFDTRTGKPRPDVLKQHFILEGRIDETAALKIINEGATLLRSE 95
C+PG FP +Q + D+ P L FI G I K + +TLL E
Sbjct: 23 CNPGFVFPEAQTIEAWDI---------PLRLHPEFIPGGDIS-----KADQQYSTLLAQE 68
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 27.8 bits (62), Expect = 3.5
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPS 45
KK+KKKKK+ K + K K K F
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRR 63
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 28.7 bits (65), Expect = 3.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYK 27
KKKK K+ K K KKK +
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREE 23
>gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid
dehydrogenase-like protein)-like, extended (e) SDRs.
This subgroup includes human NSDHL and related proteins.
These proteins have the characteristic active site
tetrad of extended SDRs, and also have a close match to
their NAD(P)-binding motif. Human NSDHL is a
3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which
functions in the cholesterol biosynthetic pathway. 3
beta-HSD catalyzes the oxidative conversion of delta 5-3
beta-hydroxysteroids to the delta 4-3-keto
configuration; this activity is essential for the
biosynthesis of all classes of hormonal steroids.
Mutations in the gene encoding NSDHL cause CHILD
syndrome (congenital hemidysplasia with ichthyosiform
nevus and limb defects), an X-linked dominant,
male-lethal trait. This subgroup also includes an
unusual bifunctional [3beta-hydroxysteroid dehydrogenase
(3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana,
and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4
decarboxylase, involved in the synthesis of ergosterol,
the major sterol of yeast. Extended SDRs are distinct
from classical SDRs. In addition to the Rossmann fold
(alpha/beta folding pattern with a central beta-sheet)
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately 100
amino acids. Extended SDRs are a diverse collection of
proteins, and include isomerases, epimerases,
oxidoreductases, and lyases; they typically have a
TGXXGXXG cofactor binding motif. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid sythase have
a GGXGXXG NAD(P)-binding motif and an altered active
site motif (YXXXN). Fungal type ketoacyl reductases have
a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 335
Score = 29.2 bits (66), Expect = 3.6
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 231 DIRKTDSKSHPLSDQCVIYCGQ-THSSNINLTNNRHKPSVLFTTDSKSHPLSDQC---VI 286
DIR T S + + G T ++ N P+V+F T S H +D V
Sbjct: 31 DIRPTFELDPSSSGRVQFHTGDLTDPQDLEKAFNEKGPNVVFHTASPDHGSNDDLYYKVN 90
Query: 287 YCGQTHSKISAMKRT-PNILV-----TIVYEAAPIFIVTEML 322
G T + I A ++ LV ++V+ I E L
Sbjct: 91 VQG-TRNVIEACRKCGVKKLVYTSSASVVFNGQDIINGDESL 131
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 29.1 bits (65), Expect = 3.7
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
K+KKK K++K+ KKK++ K++ P+ L D
Sbjct: 97 KEKKKNLNKEEKEAKKKERAKREYPFNYALVD 128
>gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and
TR-II)-like, classical (c) SDRs. This subgroup includes
TR-I and TR-II; these proteins are members of the SDR
family. TRs catalyze the NADPH-dependent reductions of
the 3-carbonyl group of tropinone, to a beta-hydroxyl
group. TR-I and TR-II produce different stereoisomers
from tropinone, TR-I produces tropine
(3alpha-hydroxytropane), and TR-II, produces
pseudotropine (sigma-tropine, 3beta-hydroxytropane).
SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 251
Score = 29.0 bits (65), Expect = 3.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 197 ACMDAFDCLPLAALMNQQFLCVHGGLS 223
A + AF C+P A+ + Q + V GGL+
Sbjct: 223 AALVAFLCMPAASYITGQIIAVDGGLT 249
>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated.
Length = 650
Score = 29.4 bits (67), Expect = 3.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLF 35
+ KKK K K KKK++K+NP P T TL
Sbjct: 228 LAELKKKDFKVSKVKKKERKRNPPPPFTTSTLQ 260
>gnl|CDD|211409 cd11568, FAT-like_CASS4_C, C-terminal FAT-like Four helix bundle
domain, also called DUF3513, of CAS (Crk-Associated
Substrate) scaffolding protein family member 4; a
protein interaction module. CASS4, also called HEPL
(HEF1-EFS-p130Cas-like), localizes to focal adhesions
and plays a role in regulating FAK activity, focal
adhesion integrity, and cell spreading. It is most
abundant in blood cells and lung tissue, and is also
found in high levels in leukemia and ovarian cell lines.
CAS proteins function as molecular scaffolds to regulate
protein complexes that are involved in many cellular
processes. They share a common domain structure
containing protein interaction modules that enable their
scaffolding function, including an N-terminal SH3
domain, an unstructured substrate domain that contains
many YxxP motifs, a serine-rich four-helix bundle, and a
FAT-like C-terminal domain, which binds to the
C-terminal domain of NSPs (novel SH2-containing
proteins) to form multidomain signaling modules that
mediate cell migration and invasion.
Length = 123
Score = 28.3 bits (63), Expect = 3.9
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 273 TDSKSHPLSDQCVIYCGQTHSKISAM------KRTPNILVTIVYEAAPIFIVTEMLVNVL 326
++ PLS+ C +Y G IS + P + ++ + I +V + LV+ L
Sbjct: 1 QPARKCPLSEHCRLYFGALQKAISVFHSSLSSNQPPEVFIS---HSKLIIMVGQKLVDTL 57
Query: 327 NICSDDELMSDGDDAL 342
C + + ++ L
Sbjct: 58 --CQEAKEREARNEIL 71
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 29.3 bits (66), Expect = 3.9
Identities = 11/28 (39%), Positives = 11/28 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK KK K KK KK K K
Sbjct: 263 KKPAKKATAAKAKKTTAKKAAAKKAAKT 290
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 29.7 bits (67), Expect = 3.9
Identities = 12/23 (52%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KKKKKK+KKK+++ K+++K +
Sbjct: 744 KTKKKKKKEKKKEEEYKREEKAR 766
Score = 29.7 bits (67), Expect = 4.3
Identities = 12/23 (52%), Positives = 20/23 (86%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K KKKKKK+KKK+++ K+++K
Sbjct: 743 EKTKKKKKKEKKKEEEYKREEKA 765
Score = 28.9 bits (65), Expect = 5.8
Identities = 12/23 (52%), Positives = 21/23 (91%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++K KKKKKK+KKK+++ K+++K
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEK 764
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 29.7 bits (66), Expect = 4.1
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ + + + ++K + +KKK K
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Score = 29.3 bits (65), Expect = 4.7
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KKK ++ KK + K + +
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAAD 1357
Score = 29.0 bits (64), Expect = 6.0
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K + + + + ++K + +
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAE 1370
Score = 29.0 bits (64), Expect = 6.3
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K + + + + ++K + +K
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEK 1371
Score = 29.0 bits (64), Expect = 6.3
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ + + + ++K + +KK
Sbjct: 1350 AEAEAAADEAEAAEEKAEAAEKK 1372
Score = 29.0 bits (64), Expect = 7.2
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK ++ KK + K + + +
Sbjct: 1336 KKAEEAKKAAEAAKAEAEAAADE 1358
Score = 29.0 bits (64), Expect = 7.2
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYK 27
K + + + + ++K + K
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKK 1372
Score = 28.6 bits (63), Expect = 9.5
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
KKK ++ KK + K + + + +
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAE 1360
Score = 28.2 bits (62), Expect = 9.9
Identities = 4/26 (15%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 1 KKKK---KKKKKKKKKKKKKKKKKKK 23
KK K + + + + ++K
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKA 1366
>gnl|CDD|191968 pfam08213, DUF1713, Mitochondrial domain of unknown function
(DUF1713). This domain is found at the C terminal end
of mitochondrial proteins of unknown function.
Length = 34
Score = 26.2 bits (58), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKN 24
+K+++K KK K KK +K+ +
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRA 27
Score = 25.4 bits (56), Expect = 7.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 1 KKKKKKKKKKKKKKKKKKKKK 21
+K+++K KK K KK +K+ +
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTR 26
Score = 25.4 bits (56), Expect = 7.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 2 KKKKKKKKKKKKKKKKKKKKK 22
+K+++K KK K KK +K+ +
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTR 26
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 29.4 bits (66), Expect = 4.3
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK+K++ + K+K++K ++KK
Sbjct: 412 NEKKQKEQADEDKEKRQKDERKK 434
Score = 28.2 bits (63), Expect = 9.8
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ +KK+K++ + K+K++K ++K
Sbjct: 411 ENEKKQKEQADEDKEKRQKDERK 433
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 29.4 bits (66), Expect = 4.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K +K KKK K KKKK
Sbjct: 118 PKPKTEKLKKKITVNKSTNKKKKK 141
Score = 29.0 bits (65), Expect = 5.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K +K KKK K KKKKK K
Sbjct: 120 PKTEKLKKKITVNKSTNKKKKKVLSSK 146
Score = 29.0 bits (65), Expect = 6.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K K +K KKK K KKK
Sbjct: 117 KPKPKTEKLKKKITVNKSTNKKKK 140
Score = 28.6 bits (64), Expect = 7.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K KKK K KKKKK K+
Sbjct: 124 KLKKKITVNKSTNKKKKKVLSSKDELI 150
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 28.3 bits (64), Expect = 4.4
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+KKKKKKKKK+ + ++KKKK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKY 104
Score = 27.9 bits (63), Expect = 5.8
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
K+KKKKKKKKK+ + ++KKKK
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYV 105
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 28.4 bits (64), Expect = 4.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK K+ K +KK+KK K+KK
Sbjct: 146 KKSKQLDKALEKKRKKNAGKEKK 168
Score = 28.4 bits (64), Expect = 4.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KKK + KK K+ K +KK+KKN
Sbjct: 139 KKKFDELKKSKQLDKALEKKRKKN 162
Score = 27.6 bits (62), Expect = 8.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
K ++++ K+ KK++K+ K+ K PY
Sbjct: 101 KDREREILKEHKKQEKELIKEGKKPY 126
Score = 27.2 bits (61), Expect = 9.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
KK + KK KKK + KK K+ +
Sbjct: 129 KKSEIKKLVLKKKFDELKKSKQLDKA 154
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 27.6 bits (62), Expect = 4.6
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KK++K K ++ K +K++ K K+
Sbjct: 40 KKQQKAKAREADKARKQQLKAKQRQ 64
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 28.9 bits (65), Expect = 4.6
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KKK +K + K K+K K+
Sbjct: 197 GSKKKGRKGGAARGKPNAKRKAKD 220
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 28.7 bits (64), Expect = 4.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
K KKK K KK KKK+ K++ N
Sbjct: 210 KYSYKKKLKSKKLKKKQAKREAN 232
Score = 28.0 bits (62), Expect = 8.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 28.0 bits (62), Expect = 8.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKK 23
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 27.3 bits (61), Expect = 4.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K +KK+K +KK++ KK K
Sbjct: 76 PPDKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 28.9 bits (65), Expect = 4.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+K K ++ +KK KK + K K YK
Sbjct: 351 AQKVKNRRARKKAKKARLAKVAKALYKS 378
Score = 28.5 bits (64), Expect = 7.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K +K K ++ +KK KK + K
Sbjct: 349 KGAQKVKNRRARKKAKKARLAKVA 372
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 28.8 bits (65), Expect = 4.9
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 1 KKKKKKKK------KKKKKKKKKKKKKKKNPYK 27
KKKKKK+K KK K K + K K YK
Sbjct: 161 KKKKKKRKKTYVVAKKGNKGKAGRPKGVKGKYK 193
>gnl|CDD|239466 cd03368, Ribosomal_S12, S12-like family, 30S ribosomal protein
S12 subfamily; S12 is located at the interface of the
large and small ribosomal subunits of prokaryotes,
chloroplasts and mitochondria, where it plays an
important role in both tRNA and ribosomal subunit
interactions. S12 is essential for maintenance of a
pretranslocation state and, together with S13,
functions as a control element for the rRNA- and
tRNA-driven movements of translocation. Antibiotics
such as streptomycin bind S12 and cause the ribosome to
misread the genetic code.
Length = 108
Score = 27.5 bits (62), Expect = 5.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYK 27
+K +KKKKKK K + P K
Sbjct: 6 IRKGRKKKKKKSKSPALEGCPQK 28
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 29.2 bits (65), Expect = 5.0
Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLIIADVFDTRTGK 60
K K KK KK K K P K P PS L A V
Sbjct: 877 VKAAKPAKKAAAKKVAAKTAAAKTPRKA--AKKKAAPPAAGLKPSAAL--AAVIGAEP-V 931
Query: 61 PRPDVLKQ--HFILEGRIDETAALKIINEGATLL 92
RP+V+K+ +I + + A + IN A L
Sbjct: 932 ARPEVIKKLWDYIKANNLQDPADKRAINADAKLR 965
>gnl|CDD|217414 pfam03189, Otopetrin, Protein of unknown function, DUF270.
Length = 413
Score = 28.8 bits (65), Expect = 5.0
Identities = 17/92 (18%), Positives = 24/92 (26%), Gaps = 18/92 (19%)
Query: 225 EIHNLDDIRKTDSKSHPLSDQCVIYCGQTHSSNINLTNNRHKPSVLFTTDSKSHPLSDQC 284
EI LS S T + +V + S
Sbjct: 93 EILKKAQKHIVFDHHSALSHD-----SSDSSKEQTSTEESTETTVTNLPKAYSLEGPAS- 146
Query: 285 VIYCGQTHSKISAMKRTPNILVTIVYEAAPIF 316
CG+T NI+ T+V A+P
Sbjct: 147 -FSCGRT-----------NIMGTLVGSASPFL 166
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 27.6 bits (61), Expect = 5.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK +K K K KKK KKKKK
Sbjct: 11 KKAEKAKAGTAKDKKKWSKKKKK 33
Score = 27.2 bits (60), Expect = 7.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+KK +K K K KKK KKKK
Sbjct: 10 EKKAEKAKAGTAKDKKKWSKKKKKEEA 36
Score = 26.8 bits (59), Expect = 9.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+KK +K K K KKK KKK
Sbjct: 9 KEKKAEKAKAGTAKDKKKWSKKK 31
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 28.0 bits (63), Expect = 5.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK K+++ KKK++K K K KKK
Sbjct: 115 KKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.0 bits (66), Expect = 5.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPY 26
+K +K KKKKKKK K K P
Sbjct: 680 EKIQKPKKKKKKKPKTVKPKPR 701
Score = 29.0 bits (66), Expect = 5.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+K+ K +KK+KKKKK+K+K+ K
Sbjct: 612 ARKRLNKANEKKEKKKKKQKEKQEELKV 639
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 27.7 bits (62), Expect = 5.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+ K ++KK + K+K K KKK
Sbjct: 110 KELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 28.2 bits (63), Expect = 6.0
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 4 KKKKKKKKKKKKKKKKKKKKN 24
K K KK KK KKKKKKK
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKR 216
Score = 27.8 bits (62), Expect = 8.8
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
K K KK KK KKKKKKK+
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
Score = 27.8 bits (62), Expect = 8.8
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKK 23
K K KK KK KKKKKKK+
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
>gnl|CDD|223757 COG0685, MetF, 5,10-methylenetetrahydrofolate reductase [Amino acid
transport and metabolism].
Length = 291
Score = 28.5 bits (64), Expect = 6.0
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 199 MDAFDCLPLAALMNQQFLCVHGGLSPEIHNLDDIRKTD 236
+ + D + L M + PE H K D
Sbjct: 127 LYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKED 164
>gnl|CDD|223898 COG0828, RpsU, Ribosomal protein S21 [Translation, ribosomal
structure and biogenesis].
Length = 67
Score = 26.5 bits (59), Expect = 6.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 4 KKKKKKKKKKKKKKKKKKKKN 24
K+K+KK +K+K K+ +K+
Sbjct: 44 KRKRKKAAARKRKFKRLRKEQ 64
Score = 26.1 bits (58), Expect = 7.6
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K+K+KK +K+K K+ +K++++
Sbjct: 44 KRKRKKAAARKRKFKRLRKEQQRE 67
>gnl|CDD|218991 pfam06326, Vesiculo_matrix, Vesiculovirus matrix protein. This
family consists of several Vesiculovirus matrix
proteins. The matrix (M) protein of vesicular
stomatitis virus (VSV) expressed in the absence of
other viral components causes many of the cytopathic
effects of VSV, including an inhibition of host gene
expression and the induction of cell rounding. It has
been shown that M protein also induces apoptosis in the
absence of other viral components. It is thought that
the activation of apoptotic pathways causes the
inhibition of host gene expression and cell rounding by
M protein.
Length = 229
Score = 28.6 bits (64), Expect = 6.1
Identities = 11/51 (21%), Positives = 13/51 (25%), Gaps = 7/51 (13%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYKPCLTD-------TLFCSPGVPFPPSQ 46
K K K K+ KK K KK +P P
Sbjct: 4 FKLLKLKGKEVASKKSKGSKKLNMSMDWDAPPSYEETRPGAAPSAPIFGVD 54
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 28.6 bits (64), Expect = 6.1
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K + K +K K
Sbjct: 223 AKAAAAKAAAEAKAAAEKAAAAK 245
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 29.1 bits (65), Expect = 6.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+KKKK++K K+K+ KK K +K+ K
Sbjct: 20 RKKKKEEKAKEKELKKLKAAQKEAKAK 46
Score = 28.3 bits (63), Expect = 8.5
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++KKKK++K K+K+ KK K +K
Sbjct: 19 ERKKKKEEKAKEKELKKLKAAQK 41
>gnl|CDD|191916 pfam07982, Herpes_UL74, Herpes UL74 glycoproteins. Members of this
family are viral glycoproteins that form part of an
envelope complex.
Length = 417
Score = 28.9 bits (64), Expect = 6.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLF 35
K K+K+ K+ +KK KK + PY T T F
Sbjct: 212 KLKRKQAPVKEPQKKSKKSQSTTTPYSSYTTSTAF 246
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 29.0 bits (65), Expect = 6.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++K++KKKK KK K+ + + N KP
Sbjct: 65 EEKEEKKKKTKKVKETTTEWELLNKTKP 92
>gnl|CDD|163640 cd07397, MPP_DevT, Myxococcus xanthus DevT and related proteins,
metallophosphatase domain. DevT is a component in the
C-signal response pathway in Myxococcus xanthus that
stimulates the developmentally regulated expression of
the FruA response regulator protein and is required for
methylation of FrzCD during fruiting body formation.
DevT mutants having an in-frame deletion in the devT
gene, display delayed aggregation and a cell autonomous
sporulation defect. DevT belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 238
Score = 28.5 bits (64), Expect = 6.6
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 105 VTVCGDIHGQFYDL--MKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPT 162
+ + GD+HGQ +DL +K + P LF+GD+ + S++ V + +L L P
Sbjct: 3 IAIVGDVHGQ-WDLEDIKALHLLQPDLV---LFVGDFGNE---SVQLVRAISSLPL--PK 53
Query: 163 TLFLLRGNHEC 173
+ L GNH+
Sbjct: 54 AVIL--GNHDA 62
>gnl|CDD|180525 PRK06310, PRK06310, DNA polymerase III subunit epsilon; Validated.
Length = 250
Score = 28.3 bits (63), Expect = 6.6
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 96 KTMIDIEAPVTVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWA 155
+ M D+E + V + +F L +L ++ P KY+ LG + R + I WA
Sbjct: 155 RAMKDVEINIKVFKHLCKRFRTLEQLKQILSKPIKMKYMPLGKHKGRLFSEIPLEYLQWA 214
Query: 156 LKL-CHPTTLFLLRGNHECRHLTEYFTFKQ 184
K+ LF +R E +H + F Q
Sbjct: 215 SKMDFDQDLLFSIR--SEIKHRKKGTGFSQ 242
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 28.5 bits (64), Expect = 6.7
Identities = 6/23 (26%), Positives = 23/23 (100%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K++++++K++KK+++++++K+K
Sbjct: 197 QKREEERRKQRKKQQEEEERKQK 219
Score = 28.2 bits (63), Expect = 7.4
Identities = 7/24 (29%), Positives = 22/24 (91%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK K++++K++++++K++KK+++
Sbjct: 190 KKLKQQQQKREEERRKQRKKQQEE 213
Score = 28.2 bits (63), Expect = 8.1
Identities = 5/23 (21%), Positives = 23/23 (100%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++K++++++K++KK+++++++K+
Sbjct: 196 QQKREEERRKQRKKQQEEEERKQ 218
Score = 28.2 bits (63), Expect = 9.0
Identities = 7/23 (30%), Positives = 21/23 (91%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK K++++K++++++K++KK++
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQ 211
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an
exchange factor for Cdc42 and an effector of Ras1, the
homolog of the human H-Ras. Scd2/Bem1 mediates Cdc42
activation by binding to Scd1/Cdc24 and to Cdc42. Ras1
regulates Scd1/Cdc24/Ral1, which is a putative guanine
nucleotide exchange factor for Cdc42, a member of the
Rho family of Ras-like proteins. Cdc42 then activates
the Shk1/Orb2 protein kinase. Scd1 interacts with Klp5
and Klp6 kinesins to mediate cytokinesis. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. Less
than 10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 27.6 bits (62), Expect = 7.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KKKKKK K K KKKKKK P +
Sbjct: 64 KKKKKKSSLKSKSSSSSKKKKKKGPLQL 91
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 28.5 bits (64), Expect = 7.1
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLI 49
K+ K++ KK + K K+ P S K I
Sbjct: 528 GTNFGKRNSKERYKKNEDKIKEFASALGKEILKEE-----PTENSSKNI 571
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 28.5 bits (64), Expect = 7.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+K KK K+ K K+K +KKN
Sbjct: 258 GSRKGKKDKEGKSTTNKEKARKKN 281
>gnl|CDD|204122 pfam09072, TMA7, Translation machinery associated TMA7. TMA7
plays a role in protein translation. Deletions of the
TMA7 gene results in altered protein synthesis rates.
Length = 63
Score = 26.0 bits (57), Expect = 7.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNP 25
K+K+K++ K K+ K K K P
Sbjct: 29 KQKQKEEAKALKELAAKAKGKGP 51
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated
C-terminal domain. This domain is found in a number of
different types of plant proteins including NAM-like
proteins.
Length = 147
Score = 27.7 bits (62), Expect = 7.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK K+K ++ K K KK++ +K+K
Sbjct: 66 KKAKEKLRRDKLKAKKEEAEKEK 88
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 28.5 bits (64), Expect = 8.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K+ KKKKKKKKKKKKK + +
Sbjct: 53 KQNNKKKKKKKKKKKKKNLGEAYDLAY 79
>gnl|CDD|235377 PRK05255, PRK05255, hypothetical protein; Provisional.
Length = 171
Score = 27.5 bits (62), Expect = 8.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 332 DELMSDGDDALEEVMQH 348
D L+++GDDAL E ++
Sbjct: 114 DRLLAEGDDALTEFLEE 130
>gnl|CDD|218242 pfam04751, DUF615, Protein of unknown function (DUF615). This
family of bacterial proteins has no known function.
Length = 153
Score = 27.5 bits (62), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 332 DELMSDGDDALEEVMQH 348
D L++DGD ALEE ++
Sbjct: 99 DRLIADGDSALEEFLEE 115
>gnl|CDD|233421 TIGR01453, grpIintron_endo, group I intron endonuclease. This
model represents one subfamily of endonucleases
containing the endo/excinuclease amino terminal domain,
pfam01541 at its amino end. A distinct subfamily
includes excinuclease abc subunit c (uvrC). Members of
pfam01541 are often termed GIY-YIG endonucleases after
conserved motifs near the amino end. This subfamily in
This model is found in open reading frames of group I
introns in both phage and mitochondria. The closely
related endonucleases of phage T4: segA, segB, segC,
segD and segE, score below the trusted cutoff for the
family.
Length = 214
Score = 27.7 bits (62), Expect = 9.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 7 KKKKKKKKKKKKKKKKKNPYKPCLTDT 33
KK ++ KKK +K+K K + D
Sbjct: 145 GKKHSEETKKKISEKEKGAKKVNVYDK 171
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 27.7 bits (62), Expect = 9.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK+K +++ + K+ K KKK N K
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKK 31
>gnl|CDD|215081 PLN00158, PLN00158, histone H2B; Provisional.
Length = 116
Score = 27.0 bits (59), Expect = 9.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYK 27
KK KK K KKK K K YK
Sbjct: 7 KKPAKKAAKGAKKKGSKSKTETYK 30
>gnl|CDD|224590 COG1676, SEN2, tRNA splicing endonuclease [Translation, ribosomal
structure and biogenesis].
Length = 181
Score = 27.4 bits (61), Expect = 9.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 115 FYDLMKLFEVGGPPASTKYLFLGDYVDRGY 144
F +LM L +YL D DRGY
Sbjct: 74 FEELMDLGAEKEESFDERYLVYRDLRDRGY 103
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,202,888
Number of extensions: 2056462
Number of successful extensions: 12007
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9555
Number of HSP's successfully gapped: 813
Length of query: 416
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 317
Effective length of database: 6,546,556
Effective search space: 2075258252
Effective search space used: 2075258252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)