RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16023
(416 letters)
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 345 bits (886), Expect = e-117
Identities = 158/199 (79%), Positives = 177/199 (88%), Gaps = 1/199 (0%)
Query: 38 PGVPFPPSQKLIIADVFDTRTGKPRPDVLKQHFILEGRIDETAALKIINEGATLLRSEKT 97
VPFPPS +L +VFD GKPR D+LK H + EGR++E+ AL+II EGA++LR EK
Sbjct: 6 KAVPFPPSHRLTAKEVFD-NDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKN 64
Query: 98 MIDIEAPVTVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALK 157
++DI+APVTVCGDIHGQF+DLMKLFEVGG PA+T+YLFLGDYVDRGYFSIECVLYLWALK
Sbjct: 65 LLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALK 124
Query: 158 LCHPTTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC 217
+ +P TLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC
Sbjct: 125 ILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC 184
Query: 218 VHGGLSPEIHNLDDIRKTD 236
VHGGLSPEI+ LDDIRK D
Sbjct: 185 VHGGLSPEINTLDDIRKLD 203
Score = 98.9 bits (247), Expect = 3e-23
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 374 KAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK 416
KAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK
Sbjct: 305 KAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK 347
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 337 bits (867), Expect = e-112
Identities = 158/199 (79%), Positives = 177/199 (88%), Gaps = 1/199 (0%)
Query: 38 PGVPFPPSQKLIIADVFDTRTGKPRPDVLKQHFILEGRIDETAALKIINEGATLLRSEKT 97
VPFPPS +L +VFD GKPR D+LK H + EGR++E+ AL+II EGA++LR EK
Sbjct: 19 KAVPFPPSHRLTAKEVFD-NDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKN 77
Query: 98 MIDIEAPVTVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALK 157
++DI+APVTVCGDIHGQF+DLMKLFEVGG PA+T+YLFLGDYVDRGYFSIECVLYLWALK
Sbjct: 78 LLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALK 137
Query: 158 LCHPTTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC 217
+ +P TLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC
Sbjct: 138 ILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC 197
Query: 218 VHGGLSPEIHNLDDIRKTD 236
VHGGLSPEI+ LDDIRK D
Sbjct: 198 VHGGLSPEINTLDDIRKLD 216
Score = 100 bits (251), Expect = 4e-23
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 374 KAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK 416
KAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK
Sbjct: 318 KAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK 360
Score = 43.7 bits (103), Expect = 8e-05
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 21/91 (23%)
Query: 287 YCGQTHSKISAMKRTPNILVTIVYEAAP----------IFI---------VTEMLVNVLN 327
Y ++K + +K N++ + +P +F VTEMLVNVLN
Sbjct: 311 YLDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLN 370
Query: 328 ICSDDELMSDGD--DALEEVMQHAVIFSKII 356
ICSDDEL S+ D D + VI +KI
Sbjct: 371 ICSDDELGSEEDGFDGATAAARKEVIRNKIR 401
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 292 bits (750), Expect = 2e-97
Identities = 71/187 (37%), Positives = 110/187 (58%), Gaps = 9/187 (4%)
Query: 59 GKPRPDVLK---QHFILEGRIDETAALKIINEGATLLRSEKTMIDIE----APVTVCGDI 111
GK +K Q + + ++ A +I+ + +L T+++ +TVCGD
Sbjct: 9 GKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDT 68
Query: 112 HGQFYDLMKLFEVGG-PPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLRGN 170
HGQFYDL+ +FE+ G P + Y+F GD+VDRG FS+E +L L+ KL +P LLRGN
Sbjct: 69 HGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGN 128
Query: 171 HECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEIHNL 229
HE ++ + + F+ E K KY+ ++Y+ + F+ LPLA +N + L +HGGL S + L
Sbjct: 129 HETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTL 188
Query: 230 DDIRKTD 236
DDIRK +
Sbjct: 189 DDIRKIE 195
Score = 44.1 bits (105), Expect = 5e-05
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 374 KAAVLKYENNVM--NIRQFNCSPHPYWLP 400
KA+ + + + + QF PHP P
Sbjct: 283 KASYIHLQGSDLRPQFHQFTAVPHPNVKP 311
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 286 bits (735), Expect = 6e-93
Identities = 81/251 (32%), Positives = 126/251 (50%), Gaps = 19/251 (7%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLIIADVFDTRTGK 60
K K K K K ++ K K+K + D S + + D +G
Sbjct: 102 KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE----HKRSVVDSLDIESMTIEDEYSGP 157
Query: 61 PRP---------DVLKQHFILEGRIDETAALKIINEGATLLRSEKTMIDIE----APVTV 107
L Q + + ++ A +I+ + +L T+++ +TV
Sbjct: 158 KLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITV 217
Query: 108 CGDIHGQFYDLMKLFEVGG-PPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFL 166
CGD HGQFYDL+ +FE+ G P + Y+F GD+VDRG FS+E +L L+ KL +P L
Sbjct: 218 CGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHL 277
Query: 167 LRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPE 225
LRGNHE ++ + + F+ E K KY+ ++Y+ + F+ LPLA +N + L +HGGL S +
Sbjct: 278 LRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSED 337
Query: 226 IHNLDDIRKTD 236
LDDIRK +
Sbjct: 338 GVTLDDIRKIE 348
Score = 43.9 bits (104), Expect = 6e-05
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 374 KAAVLKYENNVM--NIRQFNCSPHPYWLP 400
KA+ + + + + QF PHP P
Sbjct: 436 KASYIHLQGSDLRPQFHQFTAVPHPNVKP 464
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 278 bits (712), Expect = 3e-91
Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 8/181 (4%)
Query: 64 DVLKQHFILEGRIDETAALKIINEGATLLRSEKTMIDIE------APVTVCGDIHGQFYD 117
++ F+ + + II+ TL R E +M+++E ++VCGD HGQFYD
Sbjct: 19 KMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTHGQFYD 78
Query: 118 LMKLFEVGG-PPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLRGNHECRHL 176
++ LF G YLF GD+VDRG +S E L + LK+ HP FL RGNHE ++
Sbjct: 79 VLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNM 138
Query: 177 TEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEIHNLDDIRKT 235
+ + F+ ECK KYS+R+++ +F+ LPLA L+N +L +HGGL S L D +
Sbjct: 139 NKIYGFEDECKYKYSQRIFNMFAQSFESLPLATLINNDYLVMHGGLPSDPSATLSDFKNI 198
Query: 236 D 236
D
Sbjct: 199 D 199
Score = 38.4 bits (90), Expect = 0.003
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 369 TRGVVKAAVLKYENNVMNIRQFNCSPHPYWLP 400
G + ++ + I F HP P
Sbjct: 294 VPGHGILQAGRNDDQNLIIETFEAVEHPDIKP 325
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 259 bits (665), Expect = 1e-84
Identities = 77/168 (45%), Positives = 106/168 (63%), Gaps = 2/168 (1%)
Query: 71 ILEGR-IDETAALKIINEGATLLRSEKTMIDIEAPVTVCGDIHGQFYDLMKLFEVGGPPA 129
+ E + + E+ + + +L E + ++ PVTVCGD+HGQF+DLM+LF +GG
Sbjct: 17 LNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSP 76
Query: 130 STKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLRGNHECRHLTEYFTFKQECKIK 189
T YLF+GDYVDRGY+S+E V L ALK+ + + +LRGNHE R +T+ + F EC K
Sbjct: 77 DTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRK 136
Query: 190 Y-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIHNLDDIRKTD 236
Y + V+ D FD LPL AL++ Q C+HGGLSP I LD IR D
Sbjct: 137 YGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALD 184
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 251 bits (643), Expect = 2e-81
Identities = 72/188 (38%), Positives = 116/188 (61%), Gaps = 9/188 (4%)
Query: 49 IIADVFDTRTGKPRPDVLKQHFILEGRIDETAALKIINEGATLLRSEKTMIDIEAPVTVC 108
II + + + +P +V + E + + + S+ ++++EAP+ +C
Sbjct: 11 IIGRLLEVQGSRPGKNVQ---------LTENEIRGLCLKSREIFLSQPILLELEAPLKIC 61
Query: 109 GDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLR 168
GDIHGQ+YDL++LFE GG P + YLFLGDYVDRG S+E + L A K+ +P FLLR
Sbjct: 62 GDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 121
Query: 169 GNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIHN 228
GNHEC + + F ECK +Y+ +++ D F+CLP+AA+++++ C HGGLSP++ +
Sbjct: 122 GNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQS 181
Query: 229 LDDIRKTD 236
++ IR+
Sbjct: 182 MEQIRRIM 189
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 251 bits (643), Expect = 6e-81
Identities = 72/188 (38%), Positives = 116/188 (61%), Gaps = 9/188 (4%)
Query: 49 IIADVFDTRTGKPRPDVLKQHFILEGRIDETAALKIINEGATLLRSEKTMIDIEAPVTVC 108
II + + + +P +V + E + + + S+ ++++EAP+ +C
Sbjct: 12 IIGRLLEVQGSRPGKNVQ---------LTENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
Query: 109 GDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLR 168
GDIHGQ+YDL++LFE GG P + YLFLGDYVDRG S+E + L A K+ +P FLLR
Sbjct: 63 GDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 122
Query: 169 GNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIHN 228
GNHEC + + F ECK +Y+ +++ D F+CLP+AA+++++ C HGGLSP++ +
Sbjct: 123 GNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQS 182
Query: 229 LDDIRKTD 236
++ IR+
Sbjct: 183 MEQIRRIM 190
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 83.3 bits (205), Expect = 6e-18
Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 22/154 (14%)
Query: 93 RSEKTMIDIEAPVTVCGDIHGQFYDLMKLFEVGG--------PPASTKYLFLGDYVDRGY 144
+ V D+HGQ+ L+ L + + GD DRG+
Sbjct: 61 QIMPDTYLGIKKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGH 120
Query: 145 FSIECVLYLWALKLCHPTT---LFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDA 201
E + +++ L + LL GNHE L + + + +
Sbjct: 121 QVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKL 180
Query: 202 FD----------CLPLAALMNQQFLCVHGGLSPE 225
+ + L +HGG+S E
Sbjct: 181 YSADTEIGQWLRSKNT-IIKINDVLYMHGGISSE 213
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 70.2 bits (172), Expect = 4e-14
Identities = 36/190 (18%), Positives = 65/190 (34%), Gaps = 38/190 (20%)
Query: 107 VCGDIHGQFYDLMKLFE-VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLF 165
V GD+HG + +LM + +G + +GD VDRG ++EC L+L
Sbjct: 17 VVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVEC------LELITFPWFR 70
Query: 166 LLRGNHECRHLTEYFTFKQECKIKY-------------SERVYDACMDAFDCLPLA---A 209
+RGNHE + + + + + E + A D LPL
Sbjct: 71 AVRGNHE-QMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELV 129
Query: 210 LMNQQFLCVHGGLSPEIHNLDD---------IRKTDSKSHPLSDQCV-----IYCGQTHS 255
+++++ H + + R+ S S + + G T +
Sbjct: 130 SKDKKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPA 189
Query: 256 SNINLTNNRH 265
N+
Sbjct: 190 VKPLKFANQM 199
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 66.2 bits (162), Expect = 2e-12
Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 91 LLRSEKTMIDIEAPVTVCGDIHGQFYDLMKLFE-VGGPPASTKYLFLGDYVDRGYFSIEC 149
+ T+ ++ V + GDIHG L L V S + +GD V++G S
Sbjct: 7 GYANVVTLPNVTGRVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGV 66
Query: 150 VLYLWALKLCHPTTLFLLRGNHECRHLTEYFTFKQECKIK----------YSERVYDACM 199
V L L + + GNH+ + L ++ +K ++ +
Sbjct: 67 VRLLKRLG------AYSVLGNHDAKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVE 120
Query: 200 DAFDCLPLAA-LMNQQFLCVHGGLSPEI 226
LP + + H GL P+
Sbjct: 121 TYLSQLPHIIRIPAHNVMVAHAGLHPQR 148
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 62.5 bits (151), Expect = 3e-11
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 109 GDIHGQFYDLMKLFE-VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLL 167
GD+HG + +L+ L V P GD V RG S++ + Y+ +L L
Sbjct: 7 GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVL--- 63
Query: 168 RGNHECRHLTEYFTFKQECKIKYSERVYDA-----CMDAFDCLPLAALMNQ-QFLCVHGG 221
GNH+ L + + + +A ++ PL + + + + H G
Sbjct: 64 -GNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAG 122
Query: 222 LSPEIH 227
++P+
Sbjct: 123 ITPQWD 128
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 54.7 bits (131), Expect = 9e-09
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 13/153 (8%)
Query: 107 VCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFL 166
+ D+H L + G LGD V G ECV + L
Sbjct: 8 IISDVHANLVALEAVLSDAGRV--DDIWSLGDIVGYGPRPRECVELVRVLAPNIS----- 60
Query: 167 LRGNHECRHLTEYFTFKQECKIKYSERVYDACMDA-----FDCLPLAALMNQQFLCVHGG 221
+ GNH+ + + +++ + A + LP +++ + VHG
Sbjct: 61 VIGNHDWACIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPN-RMIDGDWTVVHGS 119
Query: 222 LSPEIHNLDDIRKTDSKSHPLSDQCVIYCGQTH 254
I + + + P D + + G TH
Sbjct: 120 PRHPIWEYIYNARIAALNFPAFDTPLCFVGHTH 152
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 46.3 bits (109), Expect = 7e-06
Identities = 21/183 (11%), Positives = 46/183 (25%), Gaps = 28/183 (15%)
Query: 109 GDIHGQFYDLMKLFE-----VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTT 163
+I G L KY LG+ V + E + + L
Sbjct: 8 ANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKD--LTKKEN 65
Query: 164 LFLLRGNHEC------RHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQ--- 214
+ ++RG ++ H T+ + + ++ + L +
Sbjct: 66 VKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYL 125
Query: 215 --------FLCVHGG----LSPEIHNLDDIRKTDSKSHPLSDQCVIYCGQTHSSNINLTN 262
V+G E+ ++ P+ D ++ +T
Sbjct: 126 VDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPMYPVDAMTR 185
Query: 263 NRH 265
Sbjct: 186 YGR 188
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 45.8 bits (108), Expect = 9e-06
Identities = 22/167 (13%), Positives = 39/167 (23%), Gaps = 23/167 (13%)
Query: 105 VTVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTL 164
+ + DIHG L + +Y LGD + G + L L +
Sbjct: 14 IALLSDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQLPITA---- 69
Query: 165 FLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALM------------- 211
+ GN E L + + + C + + L +
Sbjct: 70 -RVLGNWE-DSLWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQF 127
Query: 212 -NQQFLCVHGGLSPEIHNLDDIRKTDSKSHPLSDQC---VIYCGQTH 254
+ H + L + G H
Sbjct: 128 GDLTVGISHHLPDKNWGRELIHTGKQEEFDRLVTHPPCDIAVYGHIH 174
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-04
Identities = 45/248 (18%), Positives = 72/248 (29%), Gaps = 104/248 (41%)
Query: 34 LF--------CSPGVPFPPSQKLIIADVFDTRTGKPRP-----DVLKQHFILEGRIDETA 80
LF P PPS I+ D + G P P ++ ++ ++ +++T
Sbjct: 303 LFFIGVRCYEAYPNTSLPPS---ILEDSLENNEGVPSPMLSISNLTQEQ--VQDYVNKT- 356
Query: 81 ALKIINEGATLLRSEKTMIDIEAPVTVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYV 140
N + L ++ I + V G + V GPP S
Sbjct: 357 -----N--SHLPAGKQVEISL-----VNGAKN---------LVVSGPPQS---------- 385
Query: 141 DRGYFSIECVLYLWALKLCHPTTLFLLRGNHECRHLTEYFTFKQECKIKYSER--VYDAC 198
L+ L L LR L Q +I +SER +
Sbjct: 386 ------------LYGLNL-------TLRKAKAPSGL------DQ-SRIPFSERKLKFSNR 419
Query: 199 MDAFDCLPLAA-----------------LMNQQFLCVHGGLS-PEIHNLD--DIRK-TDS 237
F LP+A+ L+ + P D D+R + S
Sbjct: 420 ---F--LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 238 KSHPLSDQ 245
S + D
Sbjct: 475 ISERIVDC 482
Score = 38.9 bits (90), Expect = 0.003
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 27/113 (23%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN-------PY-KPCLTDTL------FCSPGVPFPPSQ 46
K K + + ++K K N P+ L V F
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 47 KLIIADVFDTRTGK-PR---PDVLKQHF--ILEGRID-----ETAALKIINEG 88
+ I V+DT G R + ++ I+ + + A I++ G
Sbjct: 455 -IQIP-VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.005
Identities = 60/400 (15%), Positives = 117/400 (29%), Gaps = 117/400 (29%)
Query: 14 KKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLIIADV--------FD--------TR 57
+ + ++ K PY+ CL L++ +V F+ TR
Sbjct: 231 QAELRRLLKSKPYENCL-----------------LVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 58 TGKPRPDVLK----QHFILEGRI-----DETAAL--KIINEGATLLRSEKTMIDIEAP-- 104
K D L H L+ DE +L K ++ L E + P
Sbjct: 274 F-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRR 329
Query: 105 VTVCGD------IHGQFY---DLMKLFEVGGPPASTKYLFLGDYVDRGYF---SI----- 147
+++ + + + KL + + L R F S+
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 148 ---ECVL-YLWA----------LKLCHPTTLFLLRGNHECR---HLTEYFTFKQECKIKY 190
+L +W + H +L + + E Y K + + +Y
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSI-YLELKVKLENEY 443
Query: 191 S--ERVYDA--CMDAFDCLPLAALMNQQFLCVHGGLSPEIHNLDDIRKTDSKSHPLSDQC 246
+ + D FD L Q+ H G H+L +I + +
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-----HHLKNIEHPE-RMTLFRM-- 495
Query: 247 VIYCGQTHSSNINLTNN--RHKPSVLFTTDSKSHPLSDQCVIYCGQTHSKISAMKRTPNI 304
++ + RH + + S + L Y +R N
Sbjct: 496 -VFL------DFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNA 547
Query: 305 LVTIVYEAAPIFIVTEMLVNVLNICSDDELMSDGDDALEE 344
++ + + I ++ ++L I LM++ + EE
Sbjct: 548 ILDFLPKIEENLICSKYT-DLLRIA----LMAEDEAIFEE 582
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 37.6 bits (87), Expect = 0.008
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLIIADVFDTRTGK 60
KKKKKKKKK+ K + +P + D L+ P FP Q+ D RT
Sbjct: 91 DGDGATGKKKKKKKKKRGPKVQTDPPSVPICD-LY--PNGVFPKGQECEYPPTQDGRTAA 147
Query: 61 PRPD 64
R
Sbjct: 148 WRTT 151
Score = 28.0 bits (62), Expect = 6.7
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ + KKKKKKK P
Sbjct: 83 EDDEDGDGDGDGATGKKKKKKKKKRGP 109
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 35.6 bits (81), Expect = 0.019
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPP 44
K+ K KK K ++KKKK+ K L F
Sbjct: 75 APKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDV 118
Score = 35.2 bits (80), Expect = 0.030
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLIIADVFD 55
+KK+ K+ K KK K ++KKKK P K PG + KL +FD
Sbjct: 71 QKKQAPKQPPKPKKPKPQEKKKKQPAKT--------KPGKRQRMALKLEADRLFD 117
Score = 34.4 bits (78), Expect = 0.055
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++KK+ K+ K KK K ++K +P
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQP 95
Score = 33.2 bits (75), Expect = 0.13
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ ++KK+ K+ K KK K + K
Sbjct: 66 RPPPRQKKQAPKQPPKPKKPKPQEKKKK 93
Score = 32.9 bits (74), Expect = 0.18
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ ++KK+ K+ K KK K K
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKK 92
Score = 30.2 bits (67), Expect = 1.3
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ + ++KK+ K+ K KK +
Sbjct: 62 NPRPRPPPRQKKQAPKQPPKPKKPKPQE 89
Score = 28.6 bits (63), Expect = 3.5
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ + + ++KK+ K+ K KP
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKPKKPKP 87
Score = 27.9 bits (61), Expect = 5.8
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ + + ++KK+ K+ K K P
Sbjct: 61 QNPRPRPPPRQKKQAPKQPPKPKKPKPQ 88
Score = 27.9 bits (61), Expect = 6.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTL 34
K ++KKKK+ K K K+++ L D
Sbjct: 86 KPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVK 119
Score = 27.5 bits (60), Expect = 9.1
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ + + + ++KK+ K+ P KP
Sbjct: 58 TRPQNPRPRPPPRQKKQAPKQPPKPKKP 85
Score = 27.1 bits (59), Expect = 9.9
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ + + + ++KK+ K+ K
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPK 86
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 35.5 bits (81), Expect = 0.028
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
+ +K+ K++K K K++ +K Y C+ D
Sbjct: 139 TEARKQMSKEEKLKIKEENEKLLKEYGFCIMD 170
Score = 30.9 bits (69), Expect = 0.96
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K K K KK + KKKK KK
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKE 24
Score = 29.7 bits (66), Expect = 2.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K K K K KK + KKKK K +
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQ 27
Score = 29.7 bits (66), Expect = 2.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K KK + KKKK KK+++ +K
Sbjct: 4 NKDKDKKVPEPDNKKKKPKKEEEQKWK 30
Score = 29.0 bits (64), Expect = 3.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K K K KK + KKKK KK++
Sbjct: 3 KNKDKDKKVPEPDNKKKKPKKEEEQ 27
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 33.9 bits (77), Expect = 0.029
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK K +K K KKKK+K+K Y
Sbjct: 10 AKKAGKAQKNITKTDKKKKRKRKESYA 36
Score = 32.0 bits (72), Expect = 0.11
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KK K +K K KKKK+K
Sbjct: 8 KAAKKAGKAQKNITKTDKKKKRK 30
Score = 32.0 bits (72), Expect = 0.12
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K KK K +K K KKKK+
Sbjct: 7 GKAAKKAGKAQKNITKTDKKKKRKR 31
Score = 31.6 bits (71), Expect = 0.14
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KK K +K K KKKK
Sbjct: 6 SGKAAKKAGKAQKNITKTDKKKKR 29
Score = 31.2 bits (70), Expect = 0.25
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K KK K +K K KK
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKK 26
Score = 30.8 bits (69), Expect = 0.29
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK K +K K KKKK+K+
Sbjct: 9 AAKKAGKAQKNITKTDKKKKRKRK 32
Score = 30.8 bits (69), Expect = 0.32
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KK K +K K KKK
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKK 28
Score = 29.3 bits (65), Expect = 0.94
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K KK K +K K K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDK 25
Score = 27.4 bits (60), Expect = 4.0
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYK 27
K K KK K +K K K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKK 26
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 34.5 bits (79), Expect = 0.041
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
K++KK+ ++KK+ + +++K + YK C D
Sbjct: 105 KEQKKQLTSQEKKQIRLEREKFEEDYKFCELD 136
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 34.2 bits (78), Expect = 0.070
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
++KK + K++KK K+K+ + PY+ C+ D
Sbjct: 115 REKKLSRTKEEKKAIKEKQDAEAEPYRYCVWD 146
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 32.7 bits (75), Expect = 0.084
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K ++ + +K +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARK 26
Score = 29.6 bits (67), Expect = 1.0
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K ++ + +K +K P
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIP 28
Score = 28.4 bits (64), Expect = 2.0
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K ++ + +K +K
Sbjct: 6 PKIGSRRNGRISSRKSASARKIPKG 30
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 32.4 bits (73), Expect = 0.096
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K KK K +KK KK+KK +K Y
Sbjct: 13 KGSKKAVTKTQKKGDKKRKKSRKESYS 39
Score = 31.3 bits (70), Expect = 0.20
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK KK K +KK KK+KK +
Sbjct: 12 KKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 31.3 bits (70), Expect = 0.24
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KK K +KK KK+KK
Sbjct: 11 PKKGSKKAVTKTQKKGDKKRKKS 33
Score = 30.9 bits (69), Expect = 0.30
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
KK KK K +KK KK+KK+
Sbjct: 10 APKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 30.5 bits (68), Expect = 0.40
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK KK K +KK KK+K
Sbjct: 9 PAPKKGSKKAVTKTQKKGDKKRKK 32
Score = 29.4 bits (65), Expect = 0.93
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KK K +KK KK+
Sbjct: 8 APAPKKGSKKAVTKTQKKGDKKR 30
Score = 29.4 bits (65), Expect = 1.0
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KK K +KK KK
Sbjct: 7 SAPAPKKGSKKAVTKTQKKGDKK 29
Score = 28.6 bits (63), Expect = 1.7
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KK KK K +KK K
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKK 29
Score = 27.8 bits (61), Expect = 3.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
KK K +KK KK+KK +K+ + Y
Sbjct: 16 KKAVTKTQKKGDKKRKKSRKESYSIY 41
Score = 27.4 bits (60), Expect = 4.0
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPC 29
K KK KK K +KK K
Sbjct: 5 AKSAPAPKKGSKKAVTKTQKKGDKKRKKS 33
Score = 27.4 bits (60), Expect = 4.3
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ K KK KK K +KK K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKK 29
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 31.9 bits (72), Expect = 0.099
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K++ K K KK KKK
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKK 26
Score = 30.4 bits (68), Expect = 0.35
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K++ K K KK KK
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKK 25
Score = 30.0 bits (67), Expect = 0.53
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K KK KKK KK
Sbjct: 9 KAAKAAAALAGGKKSKKKWSKKSM 32
Score = 28.8 bits (64), Expect = 1.1
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K KK KKK K K
Sbjct: 7 LSKAAKAAAALAGGKKSKKKWSKKSMK 33
Score = 28.4 bits (63), Expect = 1.4
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK KKK KK K +
Sbjct: 14 AAALAGGKKSKKKWSKKSMKDRAQ 37
Score = 28.1 bits (62), Expect = 2.4
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK KKK KK K +
Sbjct: 13 AAAALAGGKKSKKKWSKKSMKDR 35
Score = 28.1 bits (62), Expect = 2.4
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK KKK KK K + ++
Sbjct: 15 AALAGGKKSKKKWSKKSMKDRAQH 38
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 33.9 bits (78), Expect = 0.10
Identities = 5/34 (14%), Positives = 17/34 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTL 34
+ +++ K +++++ + P P T+T+
Sbjct: 746 VLEHDEEEFDLTIKLVEEREELRTPLPPYTTETM 779
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 31.5 bits (72), Expect = 0.11
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 9 KKKKKKKKKKKKKKKNPYKP 28
++ KK+ +KKK+P P
Sbjct: 2 VTPREPKKRTTRKKKDPNAP 21
Score = 29.2 bits (66), Expect = 0.55
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
++ KK+ +KKK K+ + Y
Sbjct: 3 TPREPKKRTTRKKKDPNAPKRALSAY 28
Score = 28.8 bits (65), Expect = 0.77
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRAL 25
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 33.2 bits (75), Expect = 0.12
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 107 VCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFL 166
+ G L K ++ + +G+ + + S + + L H T ++
Sbjct: 10 ATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYV 69
Query: 167 LRGNHECR 174
G +
Sbjct: 70 P-GPQDAP 76
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 32.3 bits (73), Expect = 0.13
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPC 29
+ +K ++ K+ + +NP+
Sbjct: 17 RHRKDQRWADNDFNKRLLGSRWRNPFMGA 45
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 33.3 bits (75), Expect = 0.14
Identities = 11/28 (39%), Positives = 11/28 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K KK KK KK KK KP
Sbjct: 385 KPKKPVVGKKAAATKKPAADKKPAEKKP 412
Score = 32.2 bits (72), Expect = 0.30
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQK 47
+KK KK KK KK KK KP + P +K
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKP--AEKKPTTEEKK 418
Score = 31.4 bits (70), Expect = 0.64
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
++KK KK KK KK KK K
Sbjct: 373 RRKKGKKTVGVKKPKKPVVGKKAAATK 399
Score = 30.6 bits (68), Expect = 1.1
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK KK KK +KK KP
Sbjct: 392 GKKAAATKKPAADKKPAEKKPTTEEKKP 419
Score = 29.8 bits (66), Expect = 1.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++KK KK KK KK KK
Sbjct: 372 PRRKKGKKTVGVKKPKKPVVGKK 394
Score = 29.8 bits (66), Expect = 1.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK ++KK KK KK KK
Sbjct: 366 GVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Score = 29.5 bits (65), Expect = 2.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K ++KK KK KK KK K
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGK 393
Score = 29.5 bits (65), Expect = 2.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
KK ++KK KK KK KK K
Sbjct: 368 PGKKPRRKKGKKTVGVKKPKKPVVGKK 394
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P
3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 32.0 bits (72), Expect = 0.14
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPC 29
++ + + KK+ K +P+
Sbjct: 18 HRRNNRWAENNYKKRLLGTAFKSSPFGGS 46
Score = 29.7 bits (66), Expect = 0.91
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
++ + + KK+ K+
Sbjct: 17 VHRRNNRWAENNYKKRLLGTAFKSS 41
Score = 28.5 bits (63), Expect = 2.5
Identities = 3/30 (10%), Positives = 9/30 (30%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCL 30
+ + KK+ K + + +
Sbjct: 23 RWAENNYKKRLLGTAFKSSPFGGSSHAKGI 52
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 32.1 bits (73), Expect = 0.15
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
KK +K+ +N +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
Score = 27.5 bits (61), Expect = 4.9
Identities = 2/25 (8%), Positives = 5/25 (20%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K +K+ +
Sbjct: 5 KTAPVQKEVISYGPPNVGANENVFG 29
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 31.1 bits (70), Expect = 0.18
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
++K+K+ KK K+K+ KKKK+ N
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLN 103
Score = 30.0 bits (67), Expect = 0.49
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K+K+ KK K+K+ KKKK+ +
Sbjct: 82 RKRKESPKKNKEKRMKKKKRLNR 104
Score = 28.4 bits (63), Expect = 1.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYK 27
++K+K+ KK K+K+ KKKK +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 30.8 bits (70), Expect = 0.18
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 8 KKKKKKKKKKKKKKKKNPYKP 28
+ ++ +K KK+P P
Sbjct: 3 GASDRTGVRRPRKAKKDPNAP 23
Score = 29.3 bits (66), Expect = 0.65
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
+ ++ +K KK K+ + Y
Sbjct: 5 SDRTGVRRPRKAKKDPNAPKRALSSY 30
Score = 28.5 bits (64), Expect = 1.3
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
+ ++ +K KK K+
Sbjct: 3 GASDRTGVRRPRKAKKDPNAPKRAL 27
Score = 27.0 bits (60), Expect = 4.2
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCS 37
+ ++ +K KK P + + F
Sbjct: 3 GASDRTGVRRPRKAKKDPNAPKRALSSYMFFAK 35
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 32.4 bits (73), Expect = 0.22
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
K +K K +++K + K++K
Sbjct: 18 KLRKAKAEQRKASSAQMKQRKAEWIS 43
Score = 32.1 bits (72), Expect = 0.26
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK + +K +K K +++K + +
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQR 37
Score = 31.3 bits (70), Expect = 0.49
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K +++K + K++K + K
Sbjct: 21 KAKAEQRKASSAQMKQRKAEWISKAQK 47
Score = 30.9 bits (69), Expect = 0.69
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K +K K +++K + K++K + K
Sbjct: 18 KLRKAKAEQRKASSAQMKQRKAEWISKA 45
Score = 30.5 bits (68), Expect = 0.73
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
K +++K + K++K + K Y
Sbjct: 23 KAEQRKASSAQMKQRKAEWISKAQKY 48
Score = 27.8 bits (61), Expect = 6.8
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+K + K++K + K +K Y+
Sbjct: 27 RKASSAQMKQRKAEWISKAQKYAAEYE 53
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_X 2go5_4 2j37_4
Length = 152
Score = 31.4 bits (71), Expect = 0.23
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKS 26
Score = 29.1 bits (65), Expect = 1.4
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K ++ K K K K+K KK
Sbjct: 13 KTQQALKVAKAVKSGSIKRKSKKIRTSV 40
Score = 29.1 bits (65), Expect = 1.5
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK K ++ K K K K
Sbjct: 6 AVKKADGKTQQALKVAKAVKSGSIKRK 32
Score = 27.1 bits (60), Expect = 7.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K ++ K K K K+K K
Sbjct: 12 GKTQQALKVAKAVKSGSIKRKSK 34
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 32.1 bits (72), Expect = 0.26
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
K ++ ++ +K K+K+ +
Sbjct: 21 KTAEQVAAERAARKAANKEKRAIILE 46
Score = 31.3 bits (70), Expect = 0.41
Identities = 3/26 (11%), Positives = 10/26 (38%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ ++ +K K+K+ +
Sbjct: 25 QVAAERAARKAANKEKRAIILERNAA 50
Score = 30.6 bits (68), Expect = 0.73
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ ++ +K K+K+ ++
Sbjct: 25 QVAAERAARKAANKEKRAIILER 47
Score = 30.6 bits (68), Expect = 0.91
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K ++ ++ +K K+K+ +
Sbjct: 21 KTAEQVAAERAARKAANKEKRAIILERN 48
Score = 30.2 bits (67), Expect = 1.0
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
++ +K K+K+ ++ Y
Sbjct: 26 VAAERAARKAANKEKRAIILERNAAY 51
Score = 30.2 bits (67), Expect = 1.1
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK K ++K ++ ++ +K N
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAAN 37
Score = 27.5 bits (60), Expect = 8.6
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K ++K ++ ++ +K +
Sbjct: 15 KSKAQQKTAEQVAAERAARKAANKEKR 41
Score = 27.5 bits (60), Expect = 9.0
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ +K K+K+ ++ + Y+
Sbjct: 30 RAARKAANKEKRAIILERNAAYQKEYE 56
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 30.4 bits (69), Expect = 0.30
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+ +K++ KK K +
Sbjct: 89 MKRVGDYYVFEKRESKKSKGGEA 111
Score = 29.6 bits (67), Expect = 0.66
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ K+ +K++ KK K +
Sbjct: 88 EMKRVGDYYVFEKRESKKSKGGE 110
Score = 28.8 bits (65), Expect = 1.2
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ K+ +K++ KK K
Sbjct: 86 GYEMKRVGDYYVFEKRESKKSKG 108
Score = 28.5 bits (64), Expect = 1.7
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ + K+ +K++ KK K
Sbjct: 85 EGYEMKRVGDYYVFEKRESKKSK 107
Score = 26.9 bits (60), Expect = 5.7
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K+ + + K+ +K+ K
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKS 106
Score = 26.5 bits (59), Expect = 6.5
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+ + + K+ +K++
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRE 102
Score = 26.5 bits (59), Expect = 7.0
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+ + K+ +K++ KK+
Sbjct: 83 VPEGYEMKRVGDYYVFEKRESKKS 106
Score = 26.5 bits (59), Expect = 8.2
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ + + K+ +K++ K
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKG 108
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 30.4 bits (68), Expect = 0.32
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
KK K K K K+KKK
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKK 26
Score = 29.6 bits (66), Expect = 0.55
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K K+KKKK K K
Sbjct: 10 PPSSKPAKSGGGKQKKKKWSKGKQ 33
Score = 29.2 bits (65), Expect = 0.79
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K K+KKKK K K+K
Sbjct: 12 SSKPAKSGGGKQKKKKWSKGKQK 34
Score = 29.2 bits (65), Expect = 0.86
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K+KKKK K K+K+K N
Sbjct: 15 PAKSGGGKQKKKKWSKGKQKEKVN 38
Score = 29.2 bits (65), Expect = 0.88
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K K+KKKK K
Sbjct: 8 APPPSSKPAKSGGGKQKKKKWSK 30
Score = 28.8 bits (64), Expect = 1.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K+KKKK K K+K+K N
Sbjct: 16 AKSGGGKQKKKKWSKGKQKEKVNN 39
Score = 28.4 bits (63), Expect = 1.4
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K K K+KKKK + K
Sbjct: 6 DKAPPPSSKPAKSGGGKQKKKKWSKGK 32
Score = 28.4 bits (63), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K K+KKKK K K+K+K
Sbjct: 14 KPAKSGGGKQKKKKWSKGKQKEK 36
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_e
Length = 244
Score = 31.7 bits (71), Expect = 0.32
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
+KK+K +K K + K Y
Sbjct: 23 VWAAEKKQKVAAEKIKAAENTKVIYA 48
Score = 31.7 bits (71), Expect = 0.37
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
+KK+K +K K + K +
Sbjct: 27 EKKQKVAAEKIKAAENTKVIYARAEQ 52
Score = 31.3 bits (70), Expect = 0.45
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
KK+K +K K + K + Y
Sbjct: 28 KKQKVAAEKIKAAENTKVIYARAEQY 53
Score = 31.0 bits (69), Expect = 0.61
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK+K +K K + K +
Sbjct: 27 EKKQKVAAEKIKAAENTKVIYAR 49
Score = 30.6 bits (68), Expect = 0.80
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K+++++ +KK+K +K K
Sbjct: 16 LKRRREEVWAAEKKQKVAAEKIKAAEN 42
Score = 30.6 bits (68), Expect = 0.87
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK+K +K K + K
Sbjct: 23 VWAAEKKQKVAAEKIKAAENTKV 45
Score = 30.2 bits (67), Expect = 1.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK+K +K K + K
Sbjct: 24 WAAEKKQKVAAEKIKAAENTKVI 46
Score = 28.3 bits (62), Expect = 4.4
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+++++ +KK+K +K
Sbjct: 15 ILKRRREEVWAAEKKQKVAAEKI 37
Score = 27.1 bits (59), Expect = 9.6
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
K+++++ +KK+K +K
Sbjct: 15 ILKRRREEVWAAEKKQKVAAEKIKAA 40
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 32.1 bits (72), Expect = 0.33
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K++ K +K K KK +
Sbjct: 352 KAKRQATLKANRKAAKTHKKGSQAWIA 378
Score = 30.6 bits (68), Expect = 1.00
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ K K++ K +K K K +
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQ 374
Score = 30.2 bits (67), Expect = 1.5
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K++ K +K K KK +
Sbjct: 351 SKAKRQATLKANRKAAKTHKKGSQAWI 377
Score = 29.8 bits (66), Expect = 2.0
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K++ KK + K K++ K + K
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKT 368
Score = 28.6 bits (63), Expect = 4.1
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK + K K++ K +K +K
Sbjct: 344 AKKAAEASKAKRQATLKANRKAAKTHK 370
Score = 28.6 bits (63), Expect = 4.5
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
K +K K KK + + +
Sbjct: 359 LKANRKAAKTHKKGSQAWIAAFNKANEEAIAK 390
Score = 28.2 bits (62), Expect = 4.9
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K + K K++ K +K K +
Sbjct: 346 KAAEASKAKRQATLKANRKAAKTHKKGS 373
Score = 28.2 bits (62), Expect = 6.1
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ K +K K KK + K
Sbjct: 356 QATLKANRKAAKTHKKGSQAWIAAFNK 382
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 31.7 bits (71), Expect = 0.41
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K K KK K +K K +
Sbjct: 288 TKDLKTGKKNSKMTAAQKALAKVDK 312
Score = 29.8 bits (66), Expect = 1.5
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK K +K K K K+
Sbjct: 294 GKKNSKMTAAQKALAKVDKSGMKS 317
Score = 29.8 bits (66), Expect = 1.6
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KK K +K K K
Sbjct: 291 LKTGKKNSKMTAAQKALAKVDKSG 314
Score = 29.4 bits (65), Expect = 2.2
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K KK K +K K
Sbjct: 287 NTKDLKTGKKNSKMTAAQKALAK 309
Score = 28.6 bits (63), Expect = 4.0
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K K KK K +K K
Sbjct: 283 YTKFNTKDLKTGKKNSKMTAAQKALAK 309
Score = 28.3 bits (62), Expect = 4.4
Identities = 8/28 (28%), Positives = 9/28 (32%), Gaps = 5/28 (17%)
Query: 1 KKKKKKKKKKKKKK-----KKKKKKKKK 23
+K K K K K KK K
Sbjct: 304 QKALAKVDKSGMKSIDAFFGAKNKKTGK 331
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 30.5 bits (68), Expect = 0.42
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK K+ K + KK KKK
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKK 29
Score = 30.1 bits (67), Expect = 0.57
Identities = 12/57 (21%), Positives = 18/57 (31%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLIIADVFDTR 57
K + KK KKK K K K K + + S K++ +
Sbjct: 16 IAKAAQAKKGGKKKWTKGKAKDKVNHAVFIEKKNVESIINNPSKVGKVLTVSTVVEK 72
Score = 29.4 bits (65), Expect = 1.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KK K+ K + KK KKK K K
Sbjct: 10 KKTKEAIAKAAQAKKGGKKKWTKGKAK 36
Score = 29.0 bits (64), Expect = 1.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK K+ K + KK KK
Sbjct: 6 AAGQKKTKEAIAKAAQAKKGGKK 28
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 30.6 bits (68), Expect = 0.61
Identities = 4/28 (14%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ +K+K ++ K+ ++++ + + P
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARFTP 162
Score = 29.5 bits (65), Expect = 1.4
Identities = 4/27 (14%), Positives = 15/27 (55%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+K+K ++ K+ ++++ + + P
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNK 165
Score = 27.9 bits (61), Expect = 5.0
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 1 KKKKKKKKKKKKKKKKK-------KKKKKKNPYKPCLTDTLFCSPGVPFPPS 45
+K+K ++ K+ ++++ + K+ K D + P PS
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDEDIPS 190
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 30.9 bits (69), Expect = 0.62
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYK 27
K K KK KK+ +P
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLS 27
Score = 29.8 bits (66), Expect = 1.6
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K KK KK+ +K Y
Sbjct: 7 PGLKAGGGKKGAKKRTIDPLSRKEWYD 33
Score = 27.9 bits (61), Expect = 6.5
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 1 KKKKKKKKKKKKKKKKKKK---KKKK 23
K K KK KK+ +K+
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 31.0 bits (69), Expect = 0.64
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
+ K K+ +KK K +K ++K Y+
Sbjct: 49 ELKVKRLRKKFALKTLRKARRKLIYE 74
Score = 31.0 bits (69), Expect = 0.71
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYK 27
K+ +KK K +K ++K +
Sbjct: 53 KRLRKKFALKTLRKARRKLIYEKAKH 78
Score = 30.6 bits (68), Expect = 0.74
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
+ +KK K +K ++K +K Y
Sbjct: 54 RLRKKFALKTLRKARRKLIYEKAKHY 79
Score = 30.2 bits (67), Expect = 1.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+ +KK K +K ++K +K
Sbjct: 53 KRLRKKFALKTLRKARRKLIYEK 75
Score = 29.5 bits (65), Expect = 2.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K+ +KK K +K ++K
Sbjct: 50 LKVKRLRKKFALKTLRKARRKLI 72
Score = 29.5 bits (65), Expect = 2.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK++ + K K+ +KK K
Sbjct: 42 KKRRNFAELKVKRLRKKFALKTLR 65
Score = 29.5 bits (65), Expect = 2.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ K K+ +KK K +K ++K
Sbjct: 49 ELKVKRLRKKFALKTLRKARRKL 71
Score = 29.1 bits (64), Expect = 2.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K+ +KK K +K ++K
Sbjct: 51 KVKRLRKKFALKTLRKARRKLIY 73
Score = 27.5 bits (60), Expect = 8.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KKK++ + K K+ +KK K
Sbjct: 41 KKKRRNFAELKVKRLRKKFALKTL 64
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 28.8 bits (65), Expect = 0.72
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYK 27
K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKAT 25
Score = 25.8 bits (57), Expect = 8.4
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
K KK+ +++ +K K K +
Sbjct: 6 AKPKKEAQRRPSRKAKVKATLGEFDL 31
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA
complex; HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 30.6 bits (68), Expect = 0.84
Identities = 1/28 (3%), Positives = 5/28 (17%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ ++ + P
Sbjct: 15 VPRGSHMASMTGGQQMGRGSSSVLASCP 42
Score = 30.2 bits (67), Expect = 1.0
Identities = 3/26 (11%), Positives = 7/26 (26%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
++ + KK + Y
Sbjct: 24 MTGGQQMGRGSSSVLASCPKKPVSSY 49
Score = 29.4 bits (65), Expect = 2.1
Identities = 4/36 (11%), Positives = 8/36 (22%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCS 37
++ + P KP + F
Sbjct: 19 SHMASMTGGQQMGRGSSSVLASCPKKPVSSYLRFSK 54
Score = 28.3 bits (62), Expect = 4.5
Identities = 2/25 (8%), Positives = 5/25 (20%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
++ + K P
Sbjct: 21 MASMTGGQQMGRGSSSVLASCPKKP 45
Score = 28.3 bits (62), Expect = 4.9
Identities = 2/25 (8%), Positives = 5/25 (20%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
++ + KK
Sbjct: 22 ASMTGGQQMGRGSSSVLASCPKKPV 46
Score = 28.3 bits (62), Expect = 5.0
Identities = 1/31 (3%), Positives = 8/31 (25%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLT 31
+ ++ + + K ++
Sbjct: 17 RGSHMASMTGGQQMGRGSSSVLASCPKKPVS 47
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 30.4 bits (68), Expect = 0.86
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K +KK K++ + KK ++ K
Sbjct: 254 KPTEKKFTKEQYAAESKKYRQTK 276
Score = 30.1 bits (67), Expect = 1.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYK 27
K +KK K++ + KK K
Sbjct: 253 FKPTEKKFTKEQYAAESKKYRQTK 276
Score = 28.1 bits (62), Expect = 5.9
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K +KK K++ + KK ++
Sbjct: 253 FKPTEKKFTKEQYAAESKKYRQT 275
Score = 27.4 bits (60), Expect = 9.9
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNP 25
K +KK K++ + KK +
Sbjct: 253 FKPTEKKFTKEQYAAESKKYRQT 275
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 30.6 bits (70), Expect = 0.95
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 1 KKKKKKKKKKKKKKKK---------KKKKKKKNPYKPCLTDTL 34
K+KK + K+ + K KK P +P T TL
Sbjct: 208 KEKKFFDAETLKEIQSIDELVVEEKKVSVKKFAPPEPFKTSTL 250
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 30.8 bits (70), Expect = 0.99
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYKPCLTDTL 34
+++ KK+KK+ + KKK L + L
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLENRL 506
Score = 28.9 bits (65), Expect = 3.7
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPC 29
K +++ KK+KK+ + KKK +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDV 500
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 30.4 bits (68), Expect = 1.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
KK+ KK K KK K + ++K +
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISE 138
Score = 28.4 bits (63), Expect = 3.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYKP 28
KK+ KK K KK K + ++
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISE 138
Score = 28.4 bits (63), Expect = 4.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K+ KK K KK K + ++K
Sbjct: 115 KRDKKNKSKKSKPAQGGEQKLISEE 139
Score = 27.3 bits (60), Expect = 8.9
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYKPCLTDT 33
KK+ KK K KK K + + D+
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDS 142
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.0
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
++ K +++ ++K KK + +
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQ 125
Score = 28.6 bits (63), Expect = 2.6
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 9/33 (27%)
Query: 1 KKKKKKKKKKKKK---------KKKKKKKKKKN 24
K +++ ++K KK ++ +K K N
Sbjct: 106 KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 30.6 bits (69), Expect = 1.1
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLIIADVFDTRTGK 60
+ + + + K+++++++K +K K+N + D L L +VFD K
Sbjct: 408 RARMEAQLKEQRERERKMRKAKENSEESGEFDDLV----------SALRSGEVFDKDLSK 457
Query: 61 PR 62
+
Sbjct: 458 LK 459
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 30.1 bits (68), Expect = 1.1
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++K ++ K K+K +K++ +K+
Sbjct: 318 TEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.7 bits (67), Expect = 1.9
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+++ ++K ++ K K+K +K++
Sbjct: 314 KRRETEEKMRRAKLAKEKAEKER 336
Score = 29.3 bits (66), Expect = 2.3
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
++ ++K ++ K K+K +K++ +
Sbjct: 316 RETEEKMRRAKLAKEKAEKERLEK 339
Score = 28.2 bits (63), Expect = 4.6
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+++ ++K ++ K K+K +K++
Sbjct: 315 RRETEEKMRRAKLAKEKAEKERLE 338
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_G
Length = 219
Score = 29.6 bits (66), Expect = 1.3
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYKP 28
K K K +K + + P
Sbjct: 27 AIKAKHGGALPKAEKPAAIAEPKFYP 52
Score = 28.8 bits (64), Expect = 2.9
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K K K +K + K
Sbjct: 27 AIKAKHGGALPKAEKPAAIAEPKF 50
Score = 28.8 bits (64), Expect = 3.0
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ K K K +K +P
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEP 48
Score = 27.7 bits (61), Expect = 6.8
Identities = 5/28 (17%), Positives = 7/28 (25%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKPC 29
K K K +K + Y
Sbjct: 27 AIKAKHGGALPKAEKPAAIAEPKFYPAD 54
Score = 27.3 bits (60), Expect = 8.7
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K K K +K + K P
Sbjct: 28 IKAKHGGALPKAEKPAAIAEPKFYP 52
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 29.3 bits (65), Expect = 1.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
++ K++ KK K +KK KK + K+
Sbjct: 113 REIKERIKKTKDEKKAKKAEVAKSQ 137
Score = 28.5 bits (63), Expect = 2.7
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
++ ++ K++ KK K +KK K
Sbjct: 108 REAALREIKERIKKTKDEKKAKKA 131
Score = 28.5 bits (63), Expect = 3.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+ ++ K++ KK K +KK KK
Sbjct: 109 EAALREIKERIKKTKDEKKAKKAE 132
Score = 28.1 bits (62), Expect = 4.0
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ K++ KK K +KK KK +
Sbjct: 110 AALREIKERIKKTKDEKKAKKAEVAKSQ 137
Score = 28.1 bits (62), Expect = 4.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++ ++ K++ KK K +KK KK
Sbjct: 108 REAALREIKERIKKTKDEKKAKK 130
Score = 26.9 bits (59), Expect = 8.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K++ KK K +KK KK + K +K K
Sbjct: 116 KERIKKTKDEKKAKKAEVAKSQKTQSKG 143
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 29.6 bits (66), Expect = 1.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
KK KK+ KKK+ + K +KK+
Sbjct: 255 KKPKKEVKKKRWNRPKMSLAQKKD 278
Score = 28.1 bits (62), Expect = 5.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
KKK+ + K +KK + +KK +
Sbjct: 262 KKKRWNRPKMSLAQKKDRVAQKKASFL 288
Score = 28.1 bits (62), Expect = 5.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+KK KK+ KKK+ + K +K
Sbjct: 254 EKKPKKEVKKKRWNRPKMSLAQK 276
Score = 28.1 bits (62), Expect = 5.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
++ +KK KK+ KKK+ + K
Sbjct: 248 RENPVYEKKPKKEVKKKRWNRPK 270
Score = 28.1 bits (62), Expect = 6.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
++ +KK KK+ KKK+ N K
Sbjct: 244 HAAIRENPVYEKKPKKEVKKKRWNRPK 270
Score = 27.7 bits (61), Expect = 8.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K KK+ KKK+ + K +KK
Sbjct: 256 KPKKEVKKKRWNRPKMSLAQKKDR 279
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 28.9 bits (64), Expect = 1.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++K K K+KKK +K +K +K
Sbjct: 106 EEKLKANKEKKKAEKAARKAEKAKSAGT 133
Score = 28.9 bits (64), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
+++K K K+KKK +K +K +
Sbjct: 105 REEKLKANKEKKKAEKAARKAEKA 128
Score = 28.5 bits (63), Expect = 2.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K K+KKK +K +K +K K
Sbjct: 110 KANKEKKKAEKAARKAEKAKSAGTQ 134
Score = 28.2 bits (62), Expect = 3.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+++K K K+KKK +K +K +K
Sbjct: 105 REEKLKANKEKKKAEKAARKAEK 127
Score = 27.8 bits (61), Expect = 5.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K+KKK +K +K +K K K
Sbjct: 111 ANKEKKKAEKAARKAEKAKSAGTQSSK 137
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group
protein 2A, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 86
Score = 27.7 bits (62), Expect = 2.2
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPY 26
K KK K K + Y
Sbjct: 2 SSGSSGMAKGDPKKPKGKMSAY 23
>2oqk_A Putative translation initiation factor EIF-1A; malaria,
eukaryotic initiation facto SGC, structural genomics;
1.80A {Cryptosporidium parvum iowa II}
Length = 117
Score = 28.1 bits (62), Expect = 2.4
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K K K +++ K + K++ +K
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFK 29
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 28.9 bits (64), Expect = 2.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K+ K KK +KK+ +K +
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKEWFD 31
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 28.6 bits (63), Expect = 2.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K+KK +KK+ +K + K K K
Sbjct: 115 KQKKANDIEKKRADRKLQGKDVKAAKK 141
Score = 27.4 bits (60), Expect = 5.5
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K ++ K+KK +KK+ +K
Sbjct: 109 KAVRELKQKKANDIEKKRADRKLQG 133
Score = 27.4 bits (60), Expect = 5.6
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ K+KK +KK+ +K + K+
Sbjct: 112 RELKQKKANDIEKKRADRKLQGKDVKAA 139
Score = 27.1 bits (59), Expect = 7.4
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ K+KK +KK+ +K +
Sbjct: 110 AVRELKQKKANDIEKKRADRKLQGKDVK 137
Score = 27.1 bits (59), Expect = 7.6
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K ++ K+KK +KK+ +K
Sbjct: 108 EKAVRELKQKKANDIEKKRADRK 130
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 28.5 bits (63), Expect = 2.7
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ + K+ KK K+ KK P
Sbjct: 106 EQAIRAAKEAKKAKQASKKTAMAAAKAP 133
Score = 27.7 bits (61), Expect = 4.3
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
+++ + K+ KK K+ KK K
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMAAAK 131
Score = 26.9 bits (59), Expect = 7.7
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+++ + K+ KK K+ KK
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMAAAK 131
Score = 26.9 bits (59), Expect = 8.0
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++++ + K+ KK K+ KK
Sbjct: 103 AQREQAIRAAKEAKKAKQASKKTAMAAA 130
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 29.0 bits (64), Expect = 2.7
Identities = 8/66 (12%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCSPGVPFPPSQKLIIADVFDTRTGK 60
+ + + + ++ KK + + G P + V
Sbjct: 91 SSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYPPYER------VVLREASF 144
Query: 61 PRPDVL 66
RP V+
Sbjct: 145 KRPVVI 150
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 28.1 bits (61), Expect = 3.0
Identities = 1/23 (4%), Positives = 4/23 (17%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ K + +
Sbjct: 114 ANEAGSTGSAPATGGVXKPHRYR 136
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box
domain, structural genomics, NPPSFA; NMR {Mus musculus}
Length = 102
Score = 27.4 bits (61), Expect = 3.1
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCS 37
KKKKKK + +K + Y LF
Sbjct: 2 SSGSSGKKKKKKDPNEPQKPVSAY------ALFFR 30
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 28.8 bits (64), Expect = 3.2
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ + K K+ +K
Sbjct: 13 RDISSRSNGKNPFKRSTGRKVSN 35
Score = 28.4 bits (63), Expect = 5.1
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ K K+ +K
Sbjct: 14 DISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.0 bits (62), Expect = 6.8
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+ + K K+ +K N
Sbjct: 12 NRDISSRSNGKNPFKRSTGRKVSN 35
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 29.0 bits (65), Expect = 3.6
Identities = 14/115 (12%), Positives = 29/115 (25%), Gaps = 12/115 (10%)
Query: 1 KKKKKKKKKKKKKKKKKKKK----KKKNPYKPCLTDTLFCSPGVPFPPSQKLIIADVFDT 56
K+ ++K + KK+ K + P P Q +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTRLLGL 691
Query: 57 RTGKPRPDVLKQHFILEGRIDETAALK--------IINEGATLLRSEKTMIDIEA 103
+ + + L + A +NE LR+ + +
Sbjct: 692 GASEGDARTIARDPALLAFVGGAAPGDTFAQVASWTVNELVAGLRAGEVKVRAAD 746
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 28.7 bits (64), Expect = 3.7
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ K KKK K K K+ K
Sbjct: 357 PEPKGSTKKKAKTGAAGKFKRGK 379
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 28.5 bits (63), Expect = 3.7
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
+ K KK K K+ KK K
Sbjct: 260 RVKSTKKNDKPKRDHKKFYPTK 281
Score = 28.5 bits (63), Expect = 3.7
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKK 23
+ K KK K K+ KK K
Sbjct: 260 RVKSTKKNDKPKRDHKKFYPTK 281
Score = 27.4 bits (60), Expect = 9.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 6 KKKKKKKKKKKKKKKKKKNPYK 27
+ K KK K K+ KK P K
Sbjct: 260 RVKSTKKNDKPKRDHKKFYPTK 281
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 28.3 bits (64), Expect = 3.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
K+KK +K+ K+ +KK+K K + +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHH 178
Score = 27.9 bits (63), Expect = 4.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K+KK +K+ K+ +KK+K K + +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHH 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 28.1 bits (63), Expect = 4.0
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++ K +++ +KK + ++P
Sbjct: 135 AREMKIVTERRAEKKADSRVTYSKMFQP 162
Score = 27.0 bits (60), Expect = 8.4
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
++ K +++ +KK + Y
Sbjct: 131 ASVVAREMKIVTERRAEKKADSRVTYS 157
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_H
Length = 258
Score = 28.4 bits (62), Expect = 4.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 5 KKKKKKKKKKKKKKKKKKKNP 25
K+ + KKK +K NP
Sbjct: 3 PKRGGRAPVPAKKKTEKVTNP 23
>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 62
Score = 26.2 bits (57), Expect = 4.2
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDT 33
+ + K K+ KKKK + + K+ Y
Sbjct: 15 RGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA 47
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA
complex, ribonucleoprotein, ribosomal protein,
RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
{Escherichia coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U
2vho_U 2vhp_U 3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U
3i1o_U 3i1q_U 3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y*
3kc4_U 3or9_U 3ora_U ...
Length = 71
Score = 26.3 bits (58), Expect = 4.2
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
K+ K K+ KK ++ ++ Y
Sbjct: 46 KRAKASAVKRHAKKLARENARRTRLY 71
Score = 25.6 bits (56), Expect = 7.6
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYK 27
++K+ K K+ KK ++N +
Sbjct: 44 ERKRAKASAVKRHAKKLARENARR 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.4
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 12 KKKKKKKKKKKKNPYKPCLTDTLFCSPGV 40
+K+ KK + Y D+ +P +
Sbjct: 18 EKQALKKLQASLKLYAD---DS---APAL 40
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA
polymerase, stringent response, PPGPP, riken structural
genomics/proteomics initiative; 2.00A {Escherichia
coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Length = 151
Score = 27.6 bits (61), Expect = 4.5
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYKP 28
++ + +K PY+
Sbjct: 2 QEGQNRKTSSLSILAIAGVEPYQE 25
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 266
Score = 28.4 bits (62), Expect = 4.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
K K KK KK++ KK NP
Sbjct: 6 KAKGKKVAPAPAVVKKQEAKKVVNP 30
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel,
RNA-binding protein, gene regulation; NMR {Homo
sapiens} SCOP: b.40.4.5
Length = 143
Score = 27.7 bits (61), Expect = 4.6
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K K K +++ K + + +K++ +K
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFK 28
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.4 bits (64), Expect = 4.8
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
K+ K KK K K K + K +
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGKN 476
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 28.1 bits (62), Expect = 4.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKK 19
K KK+ K+ KK
Sbjct: 253 MAKSTKKEPATHKRYNLKK 271
Score = 28.1 bits (62), Expect = 4.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 2 KKKKKKKKKKKKKKKKKKK 20
K KK+ K+ KK
Sbjct: 253 MAKSTKKEPATHKRYNLKK 271
Score = 28.1 bits (62), Expect = 4.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 3 KKKKKKKKKKKKKKKKKKK 21
K KK+ K+ KK
Sbjct: 253 MAKSTKKEPATHKRYNLKK 271
Score = 28.1 bits (62), Expect = 4.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 4 KKKKKKKKKKKKKKKKKKK 22
K KK+ K+ KK
Sbjct: 253 MAKSTKKEPATHKRYNLKK 271
Score = 28.1 bits (62), Expect = 4.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 5 KKKKKKKKKKKKKKKKKKK 23
K KK+ K+ KK
Sbjct: 253 MAKSTKKEPATHKRYNLKK 271
Score = 27.7 bits (61), Expect = 6.3
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 9 KKKKKKKKKKKKKKKNPYK 27
K KK+ K+ N K
Sbjct: 253 MAKSTKKEPATHKRYNLKK 271
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 27.6 bits (61), Expect = 5.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K +++ +KKK +KK KK+K
Sbjct: 158 PKPEEEVAQKKKISQKKLKKQKL 180
Score = 27.2 bits (60), Expect = 7.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K +++ +KKK +KK KK+K
Sbjct: 159 KPEEEVAQKKKISQKKLKKQKLM 181
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 27.6 bits (61), Expect = 5.3
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K++ K +KK + +++ +
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGR 175
Score = 27.6 bits (61), Expect = 6.3
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K +KK + +++ + +K+
Sbjct: 159 KAAEKKVVRLTSRQRGRIAAQKR 181
Score = 27.2 bits (60), Expect = 6.8
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K +KK + +++ + +K
Sbjct: 158 AKAAEKKVVRLTSRQRGRIAAQK 180
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 27.4 bits (61), Expect = 5.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 8 KKKKKKKKKKKKKKKKNPY 26
KK K K + KKK NP
Sbjct: 70 MGKKAKHKTQIKKKTLNPE 88
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 27.3 bits (61), Expect = 5.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 8 KKKKKKKKKKKKKKKKNPY 26
K+ +KKK KK+ NP
Sbjct: 49 DKRVEKKKTVTKKRNLNPI 67
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 26.7 bits (58), Expect = 5.7
Identities = 3/21 (14%), Positives = 13/21 (61%)
Query: 1 KKKKKKKKKKKKKKKKKKKKK 21
+K+++ +K +++ + K +
Sbjct: 82 LQKQRELQKANQEQYAEGKMR 102
Score = 26.7 bits (58), Expect = 5.7
Identities = 3/21 (14%), Positives = 13/21 (61%)
Query: 2 KKKKKKKKKKKKKKKKKKKKK 22
+K+++ +K +++ + K +
Sbjct: 82 LQKQRELQKANQEQYAEGKMR 102
Score = 26.7 bits (58), Expect = 5.7
Identities = 3/21 (14%), Positives = 13/21 (61%)
Query: 3 KKKKKKKKKKKKKKKKKKKKK 23
+K+++ +K +++ + K +
Sbjct: 82 LQKQRELQKANQEQYAEGKMR 102
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 27.3 bits (61), Expect = 5.8
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 8 KKKKKKKKKKKKKKKKNPY 26
KK+ KKK KK N
Sbjct: 63 KKRISKKKTHVKKCTPNAV 81
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 26.9 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K K+K K K KKKK+ +KK
Sbjct: 101 KIVKRKMISKPKTDKKKKRSQKK 123
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 27.9 bits (61), Expect = 6.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K +K+K K+ K ++ K K
Sbjct: 353 KARKEKLDSKRTKLSPEEAAKVK 375
Score = 27.9 bits (61), Expect = 7.3
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ K +K+K K+ K ++ K
Sbjct: 351 RIKARKEKLDSKRTKLSPEEAAK 373
Score = 27.9 bits (61), Expect = 7.9
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNP 25
+ + K +K+K K+ K ++
Sbjct: 348 EAARIKARKEKLDSKRTKLSPEEAA 372
Score = 27.5 bits (60), Expect = 8.8
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+ K +K+K K+ K ++
Sbjct: 350 ARIKARKEKLDSKRTKLSPEEAAK 373
Score = 27.5 bits (60), Expect = 9.9
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+K + + K +K+K K+ P
Sbjct: 341 RKMATLAEAARIKARKEKLDSKRTKLSP 368
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 173
Score = 27.3 bits (60), Expect = 7.0
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 6 KKKKKKKKKKKKKKKKKKNPY 26
K KK + K + Y
Sbjct: 3 SGSSGMGKGDPKKPRGKMSSY 23
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 27.1 bits (60), Expect = 7.1
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
+ K K K KK K K
Sbjct: 8 QAVNKAKNTAKVAKKGSSITKHKTYTGV 35
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 27.2 bits (61), Expect = 7.5
Identities = 2/23 (8%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ + + + +K+ + K+ +
Sbjct: 169 EANRAELVRFQKEARALLKELSQ 191
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP:
d.201.1.1 PDB: 1kvv_A
Length = 104
Score = 26.3 bits (58), Expect = 7.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 1 KKKKKKKKKKKKKKKKKKK 19
+ +++K+++KK KKKKKK
Sbjct: 86 AEIREQKREQKKDKKKKKK 104
Score = 26.3 bits (58), Expect = 7.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 2 KKKKKKKKKKKKKKKKKKK 20
+ +++K+++KK KKKKKK
Sbjct: 86 AEIREQKREQKKDKKKKKK 104
Score = 26.3 bits (58), Expect = 7.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 3 KKKKKKKKKKKKKKKKKKK 21
+ +++K+++KK KKKKKK
Sbjct: 86 AEIREQKREQKKDKKKKKK 104
Score = 26.3 bits (58), Expect = 7.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 4 KKKKKKKKKKKKKKKKKKK 22
+ +++K+++KK KKKKKK
Sbjct: 86 AEIREQKREQKKDKKKKKK 104
Score = 26.3 bits (58), Expect = 7.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 5 KKKKKKKKKKKKKKKKKKK 23
+ +++K+++KK KKKKKK
Sbjct: 86 AEIREQKREQKKDKKKKKK 104
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 27.8 bits (62), Expect = 8.0
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
+K +KKKKKK K +
Sbjct: 370 SRKTQKKKKKKASKTAENATSGET 393
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 27.1 bits (60), Expect = 8.1
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K KK+ K + K K K KK K
Sbjct: 4 KAKKEAPAPPKAEAKAKALKAKKAVLK 30
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural
genomics; NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 25.7 bits (56), Expect = 9.6
Identities = 7/32 (21%), Positives = 8/32 (25%), Gaps = 4/32 (12%)
Query: 5 KKKKKKKKKKKKKKKKKKKNPYKPCLTDTLFC 36
+K KKK C FC
Sbjct: 2 SSGSSGRKPPPKKKMTGTLETQFTC----PFC 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,414,195
Number of extensions: 390302
Number of successful extensions: 4240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3266
Number of HSP's successfully gapped: 413
Length of query: 416
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 320
Effective length of database: 4,021,377
Effective search space: 1286840640
Effective search space used: 1286840640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)