RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16023
(416 letters)
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 272 bits (696), Expect = 1e-87
Identities = 196/384 (51%), Positives = 232/384 (60%), Gaps = 66/384 (17%)
Query: 38 PGVPFPPSQKLIIADVFDTRTGKPRPDVLKQHFILEGRIDETAALKIINEGATLLRSEKT 97
VPFPPS +L +VFD GKPR D+LK H + EGR++E+ AL+II EGA++LR EK
Sbjct: 6 KAVPFPPSHRLTAKEVFD-NDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKN 64
Query: 98 MIDIEAPVTVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALK 157
++DI+APVTVCGDIHGQF+DLMKLFEVGG PA+T+YLFLGDYVDRGYFSIECVLYLWALK
Sbjct: 65 LLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALK 124
Query: 158 LCHPTTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC 217
+ +P TLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC
Sbjct: 125 ILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC 184
Query: 218 VHGGLSPEIHNLDDIRKTDSKSHPLSDQCVI---------YCGQTHSSNINLTNNRHKPS 268
VHGGLSPEI+ LDDIRK D P + + G + N S
Sbjct: 185 VHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCS 244
Query: 269 VLFTTD----------------------------SKSHPLSDQCVI-------YCGQTHS 293
++ KS +I Y ++
Sbjct: 245 YFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNN 304
Query: 294 KISAMKRTPNILVTIVYEAAPI----------------FI---VTEMLVNVLNICSDDEL 334
K + +K N++ + +P F+ VTEMLVNVLNICSDDEL
Sbjct: 305 KAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLNICSDDEL 364
Query: 335 MS--DGDDALEEVMQHAVIFSKII 356
S DG D + VI +KI
Sbjct: 365 GSEEDGFDGATAAARKEVIRNKIR 388
Score = 68.5 bits (167), Expect = 4e-13
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 374 KAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK 416
KAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK
Sbjct: 305 KAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK 347
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 187 bits (477), Expect = 6e-57
Identities = 72/201 (35%), Positives = 112/201 (55%), Gaps = 9/201 (4%)
Query: 59 GKPRPDVLK---QHFILEGRIDETAALKIINEGATLLRSEKTMIDI----EAPVTVCGDI 111
GK +K Q + + ++ A +I+ + +L T+++ +TVCGD
Sbjct: 9 GKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDT 68
Query: 112 HGQFYDLMKLFEVGG-PPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLRGN 170
HGQFYDL+ +FE+ G P + Y+F GD+VDRG FS+E +L L+ KL +P LLRGN
Sbjct: 69 HGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGN 128
Query: 171 HECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEIHNL 229
HE ++ + + F+ E K KY+ ++Y+ + F+ LPLA +N + L +HGGL S + L
Sbjct: 129 HETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTL 188
Query: 230 DDIRKTDSKSHPLSDQCVIYC 250
DDIRK + P +
Sbjct: 189 DDIRKIERNRQPPDSGPMCDL 209
Score = 38.4 bits (89), Expect = 0.001
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 374 KAAVLKYENNVM--NIRQFNCSPHPYWLP 400
KA+ + + + + QF PHP P
Sbjct: 283 KASYIHLQGSDLRPQFHQFTAVPHPNVKP 311
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 178 bits (452), Expect = 1e-53
Identities = 81/231 (35%), Positives = 114/231 (49%), Gaps = 2/231 (0%)
Query: 64 DVLKQHFILEGRIDETAALKIINEGATLLRSEKTMIDIEAPVTVCGDIHGQFYDLMKLFE 123
D + ++ E+ + + +L E + ++ PVTVCGD+HGQF+DLM+LF
Sbjct: 6 DQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFR 65
Query: 124 VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLRGNHECRHLTEYFTFK 183
+GG T YLF+GDYVDRGY+S+E V L ALK+ + + +LRGNHE R +T+ + F
Sbjct: 66 IGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFY 125
Query: 184 QECKIKY-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIHNLDDIRKTD-SKSHP 241
EC KY + V+ D FD LPL AL++ Q C+HGGLSP I LD IR D + P
Sbjct: 126 DECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVP 185
Query: 242 LSDQCVIYCGQTHSSNINLTNNRHKPSVLFTTDSKSHPLSDQCVIYCGQTH 292
+ F D + + H
Sbjct: 186 HEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAH 236
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
sapiens), beta isoform [TaxId: 9606]}
Length = 294
Score = 177 bits (449), Expect = 3e-53
Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 11/228 (4%)
Query: 49 IIADVFDTRTGKPRPDVLKQHFILEGRIDETAALKIINEGATLLRSEKTMIDIEAPVTVC 108
II + + R KP +V + E + + + S+ ++++EAP+ +C
Sbjct: 7 IIQRLLEVRGSKPGKNVQ---------LQENEIRGLCLKSREIFLSQPILLELEAPLKIC 57
Query: 109 GDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFLLR 168
GDIHGQ+YDL++LFE GG P + YLFLGDYVDRG S+E + L A K+ +P FLLR
Sbjct: 58 GDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 117
Query: 169 GNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIHN 228
GNHEC + + F ECK +Y+ +++ D F+CLP+AA+++++ C HGGLSP++ +
Sbjct: 118 GNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQS 177
Query: 229 LDDIRKTDSKSHPLSDQ--CVIYCGQTHSSNINLTNNRHKPSVLFTTD 274
++ IR+ + C + + N S F +
Sbjct: 178 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAE 225
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 78.4 bits (192), Expect = 2e-17
Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 36/191 (18%)
Query: 105 VTVCGDIHGQFYDLMKLFE-VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTT 163
+ V GD+HG + +LM + +G + +GD VDRG ++EC+ +L
Sbjct: 15 IWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECL------ELITFPW 68
Query: 164 LFLLRGNHECRHLTEYFTFKQECKIKYS------------ERVYDACMDAFDCLPLAALM 211
+RGNHE + + E + A D LPL +
Sbjct: 69 FRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIEL 128
Query: 212 ---NQQFLCVHGGLSPEIHNLDDI--------------RKTDSKSHPLSDQCVIYCGQTH 254
+++++ H + + + + G T
Sbjct: 129 VSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTP 188
Query: 255 SSNINLTNNRH 265
+ N+
Sbjct: 189 AVKPLKFANQM 199
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 63.9 bits (154), Expect = 3e-12
Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 7/99 (7%)
Query: 104 PVTVCGDIHGQFYDLMKLFE-----VGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKL 158
V V +I G L KY LG+ V + E + + L
Sbjct: 2 YVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTK 61
Query: 159 CHPTTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDA 197
+ ++RG ++ I E
Sbjct: 62 KEN--VKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHV 98
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 48.4 bits (114), Expect = 3e-07
Identities = 21/137 (15%), Positives = 36/137 (26%), Gaps = 8/137 (5%)
Query: 105 VTVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLY----LWALKLCH 160
+ DIHG ++ E+ + + LGD ++ G + Y +
Sbjct: 4 LMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEV 63
Query: 161 PTTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDAC----MDAFDCLPLAALMNQQFL 216
+ +RGN + F + F L AL L
Sbjct: 64 AHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVL 123
Query: 217 CVHGGLSPEIHNLDDIR 233
P +I
Sbjct: 124 VYGHTHLPVAEQRGEIF 140
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 45.1 bits (105), Expect = 5e-06
Identities = 20/198 (10%), Positives = 49/198 (24%), Gaps = 5/198 (2%)
Query: 107 VCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFL 166
+ G L K ++ + +G+ + + S + + L H T
Sbjct: 10 ATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPT-AY 68
Query: 167 LRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEI 226
+ G + + EY ++ + E F P + G
Sbjct: 69 VPGPQD-APIWEYLREAANVELVHPEMRNVHETFTFWRGPYLVAGVGGEIADEGEPEEHE 127
Query: 227 HNLDDIRKTDSKSHPLSDQCVIYCGQTHSSNINLTNNRHKPSVLFTTDSKSHPLSDQCVI 286
+ + L + + + S K+H + ++
Sbjct: 128 ALRYPAWVAEYRLKALWELKDYPKIFLFHTMPYHKGLNEQGSHEVAHLIKTH---NPLLV 184
Query: 287 YCGQTHSKISAMKRTPNI 304
K + + +
Sbjct: 185 LVAGKGQKHEMLGASWVV 202
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 36.6 bits (85), Expect = 0.003
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
K++KK+ ++KK+ + +++K + YK C D
Sbjct: 105 KEQKKQLTSQEKKQIRLEREKFEEDYKFCELD 136
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 36.2 bits (84), Expect = 0.004
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD 32
+ +K+ K++K K K++ +K Y C+ D
Sbjct: 113 TEARKQMSKEEKLKIKEENEKLLKEYGFCIMD 144
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 31.0 bits (70), Expect = 0.053
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPY 26
++ KK+ +KKK K+ + Y
Sbjct: 3 TPREPKKRTTRKKKDPNAPKRALSAY 28
Score = 27.9 bits (62), Expect = 0.59
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 9 KKKKKKKKKKKKKKKNPYKP 28
++ KK+ +KKK+P P
Sbjct: 2 VTPREPKKRTTRKKKDPNAP 21
Score = 27.9 bits (62), Expect = 0.76
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRAL 25
Score = 27.9 bits (62), Expect = 0.76
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 6 KKKKKKKKKKKKKKKKKKNPYKPCLTDTLFCS 37
++ KK+ +KKK P + F +
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYMFFAN 33
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936
{Methanococcus jannaschii [TaxId: 2190]}
Length = 165
Score = 32.1 bits (72), Expect = 0.059
Identities = 20/150 (13%), Positives = 37/150 (24%), Gaps = 30/150 (20%)
Query: 105 VTVCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTL 164
+ + D H ++ K E+ + GD+V L +
Sbjct: 3 IGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIA------- 55
Query: 165 FLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSP 224
GN++ K + + +D + +F HG
Sbjct: 56 --TYGNNDGERCKLKEWLKDINEENIIDDFISVEID-----------DLKFFITHGHHQS 102
Query: 225 EIHNLDDIRKTDSKSHPLSDQCVIYCGQTH 254
+ D V+ G TH
Sbjct: 103 VLEMAIKSGLYD----------VVIYGHTH 122
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956
{Aquifex aeolicus [TaxId: 63363]}
Length = 257
Score = 32.0 bits (71), Expect = 0.099
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 107 VCGDIHGQFYDLMKLFEVGGPPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTLFL 166
+ +F L KL V + +G+ + E A + + +
Sbjct: 7 AIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIH- 65
Query: 167 LRGNHECRHLTEYFTFKQECKIKY 190
++ L ++F E +K
Sbjct: 66 ENEHYIIETLDKFFREIGELGVKT 89
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 29.2 bits (65), Expect = 0.27
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPY 26
K ++ K +K K+ +
Sbjct: 4 GSSGKPSQEGGKGGSEKPKRPVSAM 28
Score = 24.5 bits (53), Expect = 8.9
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNP 25
K ++ K +K K P
Sbjct: 2 SSGSSGKPSQEGGKGGSEKPKRP 24
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 28.2 bits (63), Expect = 0.53
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 27.9 bits (62), Expect = 0.81
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKN 24
K+ + + K+ +K+
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 28.3 bits (63), Expect = 0.84
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K K K K +++ K + + +K++ +K
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFK 28
Score = 27.9 bits (62), Expect = 1.1
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKP 28
K K K K +++ K + + +K+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFK 28
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 29.2 bits (65), Expect = 0.98
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+++ ++K ++ K K+K +K++
Sbjct: 309 KRRETEEKMRRAKLAKEKAEKER 331
Score = 28.0 bits (62), Expect = 2.4
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K+++ ++K ++ K K+K +K+
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEKE 330
Score = 26.9 bits (59), Expect = 4.8
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
K+ +K+++ ++K ++ K K+K
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAE 328
Score = 26.5 bits (58), Expect = 5.8
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+K+++ ++K ++ K K+K +K
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEK 329
Score = 26.1 bits (57), Expect = 8.0
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
K+ +K+++ ++K ++ K K+K
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEK 326
>d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 212
Score = 28.9 bits (64), Expect = 1.0
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 36 CSPGVPFPPSQKLIIADVFDTRTGKPRPDVLKQHFILEGRIDETAALKIINEGATLLRSE 95
C+PG FP +Q + D+ P L FI G I K + +TLL E
Sbjct: 22 CNPGFVFPEAQTIEAWDI---------PLRLHPEFIPGGDIS-----KADQQYSTLLAQE 67
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 28.5 bits (63), Expect = 1.0
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDT 33
++ + + KK PY+ +
Sbjct: 66 YAAAVEEYEANPPAVARGKKPLKPYEGDMPFF 97
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 27.2 bits (60), Expect = 1.7
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNPY 26
+ K K + K N Y
Sbjct: 2 SSGSSGQLKDKFDGRPTKPPPNSY 25
Score = 25.3 bits (55), Expect = 6.8
Identities = 2/24 (8%), Positives = 11/24 (45%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNP 25
+ ++++++ ++K P
Sbjct: 82 LESLPEEEQQRVLGEEKMLNISGP 105
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus,
ba3 type [TaxId: 274]}
Length = 122
Score = 27.0 bits (59), Expect = 2.0
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 247 VIYCGQTHSSNINLTNNRHKPSVLFTTDSKSHPLSDQCVIYCGQTHS 293
VI+ +NIN+ + S + T + C YCG H
Sbjct: 66 VIHGFHVEGTNINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQ 112
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 27.0 bits (60), Expect = 2.0
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 6 KKKKKKKKKKKKKKKKKKNPYKPCL 30
+K ++K +KK K K P++ +
Sbjct: 8 RKGREKVRKKSKVPALKGAPFRRGV 32
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 26.6 bits (59), Expect = 2.4
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
+K + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
Score = 26.6 bits (59), Expect = 2.4
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKK 23
+K + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 27.3 bits (60), Expect = 2.9
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K+ + +K K+ + K +N
Sbjct: 230 SKEYETQKVPKENAENYLIKISENKND 256
Score = 26.5 bits (58), Expect = 5.6
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKPC 29
+ K + K+ + +K K+N
Sbjct: 220 IRSKFEWHTLSKEYETQKVPKENAENYL 247
Score = 26.1 bits (57), Expect = 7.4
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYK 27
K + K+ + +K K+ +N
Sbjct: 222 SKFEWHTLSKEYETQKVPKENAENYLI 248
Score = 25.8 bits (56), Expect = 9.5
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKPCLTDTLF 35
K+ + +K K+ + K L
Sbjct: 230 SKEYETQKVPKENAENYLIKISENKNDAKVSLLL 263
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 27.7 bits (61), Expect = 3.0
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKPCLTD---TLFCSPGVP 41
+ +K++ K K+ + K + F P +
Sbjct: 210 NAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQ 253
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 25.8 bits (57), Expect = 4.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNP 25
KKK ++ + K+K K + P
Sbjct: 73 KKKLEESNLTEYMKEKIKIRMP 94
Score = 24.7 bits (54), Expect = 9.5
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKKNPYKPCL 30
++ KKK ++ + K+K P L
Sbjct: 68 SDEEVKKKLEESNLTEYMKEKIKIRMPTL 96
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 26.0 bits (57), Expect = 4.0
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 3 KKKKKKKKKKKKKKKKKKKKKNP 25
K + + K+ K+K+
Sbjct: 75 VKSLSPQDRAAYKEYISNKRKSG 97
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 25.2 bits (55), Expect = 4.7
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKK 23
+ + KKKK+K++K
Sbjct: 64 MQLYPGWSARDNYGKKKKRKREK 86
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 26.2 bits (58), Expect = 5.4
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKNPYKP 28
++++KK+ +K +K K +
Sbjct: 62 ARERQKKRAYGHQKGAGSRKGKAGARQN 89
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 26.4 bits (57), Expect = 7.3
Identities = 34/294 (11%), Positives = 63/294 (21%), Gaps = 43/294 (14%)
Query: 108 CGDIHGQFYDLMKLFEVGG---PPASTKYLFLGDYVDRGYFSIECVLYLWALKLCHPTTL 164
GD QF L FE G L D R IE L+
Sbjct: 54 LGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKA 113
Query: 165 F-----LLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVH 219
+ G+ E + + F K + + D +
Sbjct: 114 REYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGES------------Q 161
Query: 220 GGLSPEIHNLDDIRKTDSKSHPLSDQCVIYCGQTHSSNINLTNNRHKPSVLFTTDSKSHP 279
+ +D ++ + + ++ T D +
Sbjct: 162 VSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAM 221
Query: 280 LSDQC-----VIYC-GQTHSKISAMKRTPNILVTIVYEAAPIFIVTEMLVNVLNICSDDE 333
+ +IY +A +E +
Sbjct: 222 DRYEKYHFDKMIYVIASQQDLHAAQ----------FFEILKQMGFEWAKDLQHVNFGMVQ 271
Query: 334 LMS-------DGDDALEEVMQHAVIFSKIIISSPLSELTKHKTRGVVKAAVLKY 380
MS D+ LEE + K + + +V + +
Sbjct: 272 GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMI 325
>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus
aureus [TaxId: 1280]}
Length = 145
Score = 25.6 bits (56), Expect = 7.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 4 KKKKKKKKKKKKKKKKKKKKNPYKP 28
++KK + ++ KK KK K++NP
Sbjct: 75 ERKKVQYEEYKKLYKKYKEENPTSK 99
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 132
Score = 25.5 bits (55), Expect = 7.9
Identities = 7/61 (11%), Positives = 15/61 (24%)
Query: 242 LSDQCVIYCGQTHSSNINLTNNRHKPSVLFTTDSKSHPLSDQCVIYCGQTHSKISAMKRT 301
L +I + + + + + + SD G T +I
Sbjct: 51 LFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNN 110
Query: 302 P 302
Sbjct: 111 N 111
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 24.7 bits (54), Expect = 8.0
Identities = 6/28 (21%), Positives = 7/28 (25%)
Query: 9 KKKKKKKKKKKKKKKNPYKPCLTDTLFC 36
+K KKK FC
Sbjct: 2 SSGSSGRKPPPKKKMTGTLETQFTCPFC 29
Score = 24.7 bits (54), Expect = 8.5
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 1 KKKKKKKKKKKKKKKKKK 18
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.7 bits (54), Expect = 8.5
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 2 KKKKKKKKKKKKKKKKKK 19
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.7 bits (54), Expect = 8.5
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 3 KKKKKKKKKKKKKKKKKK 20
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.7 bits (54), Expect = 8.5
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 4 KKKKKKKKKKKKKKKKKK 21
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.7 bits (54), Expect = 8.5
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 5 KKKKKKKKKKKKKKKKKK 22
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.7 bits (54), Expect = 8.5
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 6 KKKKKKKKKKKKKKKKKK 23
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d1j20a2 d.210.1.1 (A:171-395) Argininosuccinate synthetase,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 225
Score = 26.0 bits (57), Expect = 8.2
Identities = 18/142 (12%), Positives = 39/142 (27%), Gaps = 16/142 (11%)
Query: 258 INLTNNRHKPSVLFTTDSKSHPLSDQCVIYCGQTHSKISAMKRTPNILVTIVYEAAPIFI 317
+ + R P+ L + + + + + R + VYE I
Sbjct: 56 VAVNGERLSPAALLQ---RLNEIGGRHGVGR-----VDIVENRFVGMKSRGVYETPGGTI 107
Query: 318 VTEMLVNVLNICSDDELM----SDGDDALEEVMQHAVIFSKIIISSPLSELTKHKTRGVV 373
+ V ++ D E++ E V + + GV
Sbjct: 108 LYHARRAVESLTLDREVLHQRDMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVA 167
Query: 374 KAAVLKYENNVMNIRQFNCSPH 395
+ + K V+ + +P
Sbjct: 168 RLKLYKGNVYVVGRK----APK 185
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 24.8 bits (54), Expect = 8.7
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKKKN 24
+ K +K K K + + N
Sbjct: 17 SAMARAKNLEKAKAAGKGSQLEAN 40
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 25.5 bits (55), Expect = 9.1
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 1 KKKKKKKKKKKKKKKKKKKKKK 22
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 25.5 bits (55), Expect = 9.1
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 2 KKKKKKKKKKKKKKKKKKKKKK 23
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,607,737
Number of extensions: 79057
Number of successful extensions: 944
Number of sequences better than 10.0: 1
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 106
Length of query: 416
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,199,356
Effective search space: 393388768
Effective search space used: 393388768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)