BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16024
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JGR|A Chain A, Crystal Structure Of Yegs In Complex With Adp
Length = 299
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG 162
+A ++V G ++A GGDGT + + + D P++GI+PLGT ND + +G
Sbjct: 45 DAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVG 104
Query: 163 WGKLYDR 169
+ D+
Sbjct: 105 IPEALDK 111
>pdb|2BON|A Chain A, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
pdb|2BON|B Chain B, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
Length = 332
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG 162
+A ++V G ++A GGDGT + + + D P++GI+PLGT ND + +G
Sbjct: 70 DAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVG 129
Query: 163 WGKLYDR 169
+ D+
Sbjct: 130 IPEALDK 136
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 38/179 (21%)
Query: 69 NRKSGNGDGSHILSTFRRLLNPLQVV-----DLADKSPEEALQWVSLMPSSGQTLILAAG 123
N K+G GD + + +++ PL L K +A ++ +S LI+ G
Sbjct: 20 NPKAGQGD---LHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEF-ASKVDLIIVFG 75
Query: 124 GDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG-------WGKLYDRDTCSPF- 175
GDGT N + L+ P++ IIP GT ND SR LG KL ++ P
Sbjct: 76 GDGTVFECTNGL--APLEIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKPVD 133
Query: 176 -------------------QILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYN 215
++ +N+ + A L + + +IR ++ + Y+
Sbjct: 134 VAKANGQHFLNFWGIGLVSEVSNNIDAEEKAKLGKIGYYLSTIRTVKNAETFPVKITYD 192
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 38/179 (21%)
Query: 69 NRKSGNGDGSHILSTFRRLLNPLQVV-----DLADKSPEEALQWVSLMPSSGQTLILAAG 123
N K+G GD + + +++ PL L K +A ++ +S LI+ G
Sbjct: 16 NPKAGQGD---LHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEF-ASKVDLIIVFG 71
Query: 124 GDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG-------WGKLYDRDTCSPF- 175
GDGT N + L+ P++ IIP GT ND SR LG KL ++ P
Sbjct: 72 GDGTVFECTNGL--APLEIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKPVD 129
Query: 176 -------------------QILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYN 215
++ +N+ + A L + + +IR ++ + Y+
Sbjct: 130 VAKANGQHFLNFWGIGLVSEVSNNIDAEEKAKLGKIGYYLSTIRTVKNAETFPVKITYD 188
>pdb|2P1R|A Chain A, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|B Chain B, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|C Chain C, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|D Chain D, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases
Length = 299
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG 162
+A ++V G ++A GGDGT + + ++ AP++G++PLGT ND + G
Sbjct: 45 DAQRYVDEARRLGVETVIAGGGDGTINEVSTALIQIRDGVAPALGLLPLGTANDFATSAG 104
Query: 163 WGKLYDR 169
+ D+
Sbjct: 105 IPEALDK 111
>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex
With Adp And Mg
pdb|2QVL|A Chain A, Crystal Structure Of Diacylglycerol Kinase
Length = 337
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 118 LILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVL 161
+++AAGGDGT ++N I + P +G+IP GT ND R L
Sbjct: 83 VLIAAGGDGTLNEVVNGI--AEKPNRPKLGVIPXGTVNDFGRAL 124
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain Of
Human Sulfite Oxidase
Length = 82
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHN 137
+ ++V L P L+LAAGG W L +HN
Sbjct: 32 DVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHN 66
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 66 GRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLI 119
G + + GNG G+H+ T L N + V+ +A P L V ++ +SG I
Sbjct: 52 GEPSTQDGNGHGTHVAGTIAALDNSIGVLGVA---PSAELYAVKVLGASGSGAI 102
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 66 GRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLI 119
G + + GNG G+H+ T L N + V+ +A P L V ++ +SG I
Sbjct: 52 GEPSTQDGNGHGTHVAGTIAALDNSIGVLGVA---PSAELYAVKVLGASGSGAI 102
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 147 GIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSV 194
G I LGTG+ LGW D S + + + ++ + HL RW +
Sbjct: 475 GGIVLGTGDLSELALGWSTYGVGDQMSHYNVNAGVPKTLIQHLIRWVI 522
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 147 GIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSV 194
G I LGTG+ LGW D S + + + ++ + HL RW +
Sbjct: 475 GGIVLGTGDLSELALGWSTYGVGDQMSHYNVNAGVPKTLIQHLIRWVI 522
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 74 NGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133
N G+H+ T L N + V+ +A P +L V +L A G G +WI+N
Sbjct: 62 NSHGTHVAGTVAALNNSIGVLGVA---PSASLYAVK---------VLGADGSGQYSWIIN 109
Query: 134 TI 135
I
Sbjct: 110 GI 111
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 74 NGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133
N G+H+ T L N + V+ +A P +L V +L A G G +WI+N
Sbjct: 62 NSHGTHVAGTVAALNNSIGVLGVA---PSASLYAVK---------VLGADGSGQYSWIIN 109
Query: 134 TI 135
I
Sbjct: 110 GI 111
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 74 NGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133
N G+H+ T L N + V+ +A P +L V +L A G G +WI+N
Sbjct: 62 NSHGTHVAGTVAALNNSIGVLGVA---PSASLYAVK---------VLGADGSGQYSWIIN 109
Query: 134 TI 135
I
Sbjct: 110 GI 111
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 73 GNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQ 116
GNG G+H+ T L N V+ +A P +L + ++ SSG
Sbjct: 60 GNGHGTHVAGTVAALDNTTGVLGVA---PNVSLYAIKVLNSSGS 100
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 74 NGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133
N G+H+ T L N + V+ +A P +L V +L A G G +WI+N
Sbjct: 62 NSHGTHVAGTVAALNNSIGVLGVA---PSASLYAVK---------VLGADGSGQYSWIIN 109
Query: 134 TI 135
I
Sbjct: 110 GI 111
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 74 NGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133
N G+H+ T L N + V+ +A P +L V +L A G G +WI+N
Sbjct: 62 NSHGTHVAGTVAALNNSIGVLGVA---PSASLYAVK---------VLGADGSGQYSWIIN 109
Query: 134 TI 135
I
Sbjct: 110 GI 111
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 74 NGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133
N G+H+ T L N + V+ +A P +L V +L A G G +WI+N
Sbjct: 62 NSHGTHVAGTVAALNNSIGVLGVA---PSASLYAVK---------VLGADGSGQYSWIIN 109
Query: 134 TI 135
I
Sbjct: 110 GI 111
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 74 NGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133
N G+H+ T L N + V+ +A P +L V +L A G G +WI+N
Sbjct: 62 NSHGTHVAGTVAALNNSIGVLGVA---PSASLYAVK---------VLGADGSGQYSWIIN 109
Query: 134 TI 135
I
Sbjct: 110 GI 111
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 74 NGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133
N G+H+ T L N + V+ +A P +L V +L A G G +WI+N
Sbjct: 62 NSHGTHVAGTVAALNNSIGVLGVA---PSASLYAVK---------VLGADGSGQYSWIIN 109
Query: 134 TI 135
I
Sbjct: 110 GI 111
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 74 NGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133
N G+H+ T L N + V+ +A P +L V +L A G G +WI+N
Sbjct: 62 NSHGTHVAGTVAALNNSIGVLGVA---PSASLYAVK---------VLGADGSGQYSWIIN 109
Query: 134 TI 135
I
Sbjct: 110 GI 111
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 74 NGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133
N G+H+ T L N + V+ +A P +L V +L A G G +WI+N
Sbjct: 62 NSHGTHVAGTVAALDNSIGVLGVA---PSASLYAVK---------VLGADGSGQYSWIIN 109
Query: 134 TI 135
I
Sbjct: 110 GI 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,920,750
Number of Sequences: 62578
Number of extensions: 425226
Number of successful extensions: 1043
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 41
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)