Query psy16024
Match_columns 316
No_of_seqs 309 out of 1506
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 18:58:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11914 diacylglycerol kinase 100.0 2.6E-45 5.7E-50 334.1 17.1 221 62-315 9-232 (306)
2 TIGR03702 lip_kinase_YegS lipi 100.0 6.5E-45 1.4E-49 329.3 15.6 217 63-315 1-219 (293)
3 PRK13057 putative lipid kinase 100.0 1.6E-44 3.5E-49 326.0 17.0 210 65-315 1-212 (287)
4 KOG1169|consensus 100.0 1.1E-44 2.4E-49 342.2 16.4 242 63-308 273-531 (634)
5 PRK13059 putative lipid kinase 100.0 1.5E-44 3.2E-49 327.1 16.0 216 62-315 2-219 (295)
6 PRK13055 putative lipid kinase 100.0 1.6E-44 3.6E-49 331.9 15.3 220 62-315 3-225 (334)
7 PRK13337 putative lipid kinase 100.0 1.6E-44 3.4E-49 328.4 14.8 218 62-315 2-221 (304)
8 PRK13054 lipid kinase; Reviewe 100.0 1E-43 2.2E-48 322.5 16.3 218 62-315 4-223 (300)
9 PLN02958 diacylglycerol kinase 100.0 1.3E-42 2.8E-47 331.4 20.0 257 4-315 78-386 (481)
10 PRK00861 putative lipid kinase 100.0 3.8E-43 8.3E-48 319.0 15.0 216 62-315 3-220 (300)
11 COG1597 LCB5 Sphingosine kinas 100.0 9.1E-43 2E-47 314.5 13.4 220 61-315 2-223 (301)
12 KOG0782|consensus 100.0 1.4E-42 3E-47 318.5 13.0 252 59-315 363-634 (1004)
13 TIGR00147 lipid kinase, YegS/R 100.0 5.7E-42 1.2E-46 310.5 16.6 218 62-315 2-222 (293)
14 PRK12361 hypothetical protein; 100.0 2.2E-39 4.7E-44 316.4 15.5 216 61-315 242-465 (547)
15 PLN02204 diacylglycerol kinase 100.0 2E-37 4.3E-42 294.8 15.5 200 59-280 157-431 (601)
16 KOG1116|consensus 100.0 2.8E-32 6.1E-37 254.9 15.6 186 54-262 172-363 (579)
17 KOG1170|consensus 100.0 1.3E-33 2.8E-38 268.0 6.2 259 54-316 187-727 (1099)
18 PF00781 DAGK_cat: Diacylglyce 99.9 3.6E-26 7.9E-31 182.3 6.9 124 63-195 1-128 (130)
19 smart00046 DAGKc Diacylglycero 99.9 8.5E-25 1.8E-29 172.7 12.0 100 65-166 1-101 (124)
20 KOG1115|consensus 99.9 1.5E-23 3.2E-28 187.2 10.4 225 61-315 158-427 (516)
21 PF00609 DAGK_acc: Diacylglyce 99.8 5.6E-21 1.2E-25 157.6 2.6 105 212-316 1-118 (161)
22 smart00045 DAGKa Diacylglycero 99.8 1.9E-19 4.2E-24 148.5 3.6 105 212-316 1-116 (160)
23 KOG1170|consensus 99.6 9.1E-16 2E-20 147.2 3.7 120 2-131 643-767 (1099)
24 KOG4435|consensus 99.4 4.5E-13 9.7E-18 120.3 8.7 155 61-227 60-221 (535)
25 KOG1169|consensus 99.3 1.7E-12 3.7E-17 124.3 5.0 63 1-63 460-525 (634)
26 PF00609 DAGK_acc: Diacylglyce 99.2 1.9E-12 4.2E-17 106.7 0.6 63 1-63 29-92 (161)
27 KOG0782|consensus 98.8 9.5E-10 2.1E-14 102.9 1.3 63 1-63 546-612 (1004)
28 PRK03708 ppnK inorganic polyph 98.8 1.5E-08 3.2E-13 90.7 7.0 110 62-187 1-115 (277)
29 COG3199 Predicted inorganic po 98.5 3.3E-07 7.1E-12 82.2 8.2 74 99-184 84-157 (355)
30 PRK02645 ppnK inorganic polyph 98.5 2.7E-07 5.9E-12 83.8 7.4 112 62-187 4-118 (305)
31 PRK03378 ppnK inorganic polyph 98.5 3.9E-07 8.5E-12 82.1 7.7 107 63-186 7-121 (292)
32 PRK01231 ppnK inorganic polyph 97.8 6.6E-05 1.4E-09 67.9 7.0 109 63-187 6-121 (295)
33 PF01513 NAD_kinase: ATP-NAD k 97.6 5.3E-05 1.2E-09 68.4 3.3 63 114-189 75-137 (285)
34 PRK02155 ppnK NAD(+)/NADH kina 97.4 0.0003 6.5E-09 63.6 6.2 109 63-187 7-122 (291)
35 PRK01911 ppnK inorganic polyph 97.3 0.00096 2.1E-08 60.2 7.9 110 62-187 1-123 (292)
36 PRK14077 pnk inorganic polypho 97.2 0.0012 2.6E-08 59.4 7.3 107 63-186 12-122 (287)
37 PRK03372 ppnK inorganic polyph 97.2 0.0012 2.5E-08 60.0 7.0 109 63-187 7-131 (306)
38 PRK02649 ppnK inorganic polyph 97.1 0.0013 2.8E-08 59.7 6.4 109 63-187 3-127 (305)
39 PLN02935 Bifunctional NADH kin 97.0 0.007 1.5E-07 58.0 10.4 60 115-187 262-321 (508)
40 PRK04539 ppnK inorganic polyph 96.9 0.0024 5.2E-08 57.8 6.8 109 63-187 7-127 (296)
41 PLN02727 NAD kinase 96.8 0.0053 1.1E-07 62.5 8.8 155 1-186 632-801 (986)
42 PRK04885 ppnK inorganic polyph 96.7 0.0046 1E-07 55.0 6.5 95 63-187 2-96 (265)
43 PRK03501 ppnK inorganic polyph 96.6 0.012 2.6E-07 52.4 8.7 96 63-187 4-100 (264)
44 PRK14075 pnk inorganic polypho 96.5 0.014 3E-07 51.8 8.2 97 63-188 2-98 (256)
45 PRK00561 ppnK inorganic polyph 96.4 0.018 3.9E-07 51.0 8.4 68 115-195 33-101 (259)
46 smart00045 DAGKa Diacylglycero 96.3 0.0088 1.9E-07 49.1 5.4 63 1-63 29-92 (160)
47 PRK01185 ppnK inorganic polyph 96.2 0.015 3.3E-07 51.9 6.8 107 62-187 1-108 (271)
48 PRK14076 pnk inorganic polypho 95.9 0.024 5.2E-07 56.2 7.6 113 60-187 289-407 (569)
49 PLN02929 NADH kinase 95.6 0.041 8.8E-07 49.8 7.2 67 115-188 64-141 (301)
50 PRK02231 ppnK inorganic polyph 94.6 0.044 9.4E-07 49.0 4.2 58 115-185 42-100 (272)
51 COG0061 nadF NAD kinase [Coenz 93.9 0.4 8.6E-06 43.2 9.0 61 114-187 54-114 (281)
52 PRK04761 ppnK inorganic polyph 93.7 0.26 5.6E-06 43.4 7.2 35 115-153 25-59 (246)
53 PF00731 AIRC: AIR carboxylase 90.3 1.3 2.8E-05 35.8 6.9 75 73-153 8-88 (150)
54 KOG4180|consensus 89.1 0.38 8.2E-06 43.4 3.2 64 116-189 106-171 (395)
55 PF10254 Pacs-1: PACS-1 cytoso 88.9 1.3 2.8E-05 41.7 6.7 48 115-163 75-128 (414)
56 cd08173 Gro1PDH Sn-glycerol-1- 87.8 1.3 2.8E-05 41.0 6.1 84 63-154 27-113 (339)
57 PTZ00286 6-phospho-1-fructokin 87.4 1.8 3.9E-05 41.7 6.8 63 101-165 162-230 (459)
58 KOG2178|consensus 85.8 0.38 8.3E-06 44.5 1.3 59 115-186 168-226 (409)
59 cd08181 PPD-like 1,3-propanedi 85.7 2.7 5.8E-05 39.2 7.0 95 62-159 26-142 (357)
60 cd08185 Fe-ADH1 Iron-containin 85.6 1.9 4.2E-05 40.5 6.1 96 62-160 26-149 (380)
61 cd08186 Fe-ADH8 Iron-containin 85.4 1.8 3.9E-05 40.8 5.7 96 63-161 28-147 (383)
62 PRK06830 diphosphate--fructose 84.8 1.7 3.7E-05 41.6 5.2 62 101-164 158-225 (443)
63 cd07766 DHQ_Fe-ADH Dehydroquin 84.7 2.4 5.1E-05 39.0 6.0 86 63-154 25-117 (332)
64 cd08180 PDD 1,3-propanediol de 84.1 3.1 6.8E-05 38.3 6.6 89 63-155 24-123 (332)
65 cd08194 Fe-ADH6 Iron-containin 84.1 2.9 6.3E-05 39.2 6.5 91 63-157 25-138 (375)
66 cd08176 LPO Lactadehyde:propan 84.0 2.6 5.6E-05 39.6 6.1 95 63-161 30-147 (377)
67 cd08172 GlyDH-like1 Glycerol d 83.2 2.9 6.3E-05 38.8 6.0 88 63-158 25-117 (347)
68 PLN02564 6-phosphofructokinase 83.0 2.9 6.3E-05 40.5 6.0 61 102-164 163-229 (484)
69 PRK00843 egsA NAD(P)-dependent 82.1 3.6 7.9E-05 38.2 6.2 84 63-154 36-122 (350)
70 cd08171 GlyDH-like2 Glycerol d 81.0 2.3 4.9E-05 39.5 4.4 86 62-155 23-116 (345)
71 TIGR02483 PFK_mixed phosphofru 80.9 2.7 6E-05 38.6 4.8 57 103-164 82-141 (324)
72 TIGR02482 PFKA_ATP 6-phosphofr 80.0 3.5 7.6E-05 37.5 5.2 54 102-159 78-131 (301)
73 cd08197 DOIS 2-deoxy-scyllo-in 80.0 3.3 7.2E-05 38.6 5.2 88 63-156 25-125 (355)
74 PRK10624 L-1,2-propanediol oxi 79.7 5.3 0.00012 37.6 6.5 94 63-160 32-150 (382)
75 cd08551 Fe-ADH iron-containing 79.2 4 8.7E-05 38.2 5.5 88 63-154 25-135 (370)
76 cd08183 Fe-ADH2 Iron-containin 79.1 4.3 9.3E-05 38.1 5.7 89 63-158 24-138 (374)
77 PRK09860 putative alcohol dehy 78.4 5.4 0.00012 37.6 6.1 83 80-163 47-152 (383)
78 cd08550 GlyDH-like Glycerol_de 77.5 3.8 8.2E-05 38.0 4.8 84 63-154 24-114 (349)
79 TIGR03405 Phn_Fe-ADH phosphona 77.2 8.9 0.00019 35.7 7.1 94 63-160 25-145 (355)
80 TIGR02638 lactal_redase lactal 76.8 7.5 0.00016 36.5 6.6 94 63-160 31-149 (379)
81 PF13685 Fe-ADH_2: Iron-contai 75.6 7.5 0.00016 34.3 5.8 72 81-156 35-112 (250)
82 cd08170 GlyDH Glycerol dehydro 75.0 10 0.00022 35.2 6.9 89 63-159 24-119 (351)
83 cd00363 PFK Phosphofructokinas 75.0 4.3 9.2E-05 37.6 4.3 54 103-158 80-136 (338)
84 PRK15138 aldehyde reductase; P 74.4 9.8 0.00021 35.9 6.7 94 63-159 31-148 (387)
85 cd08182 HEPD Hydroxyethylphosp 74.0 10 0.00022 35.5 6.6 54 103-157 65-139 (367)
86 cd08187 BDH Butanol dehydrogen 74.0 7.2 0.00016 36.7 5.7 93 63-158 30-145 (382)
87 cd08192 Fe-ADH7 Iron-containin 73.9 7.4 0.00016 36.4 5.7 89 63-155 26-141 (370)
88 cd08169 DHQ-like Dehydroquinat 73.5 6.2 0.00013 36.6 5.0 89 63-157 25-125 (344)
89 cd08174 G1PDH-like Glycerol-1- 73.4 9.4 0.0002 35.1 6.2 79 63-155 27-111 (331)
90 PLN02884 6-phosphofructokinase 73.2 9.1 0.0002 36.4 6.1 54 104-158 132-187 (411)
91 cd08179 NADPH_BDH NADPH-depend 73.2 8.8 0.00019 36.0 6.1 93 63-158 25-143 (375)
92 PRK14072 6-phosphofructokinase 73.2 6.2 0.00014 37.6 5.0 57 102-159 90-148 (416)
93 COG1454 EutG Alcohol dehydroge 73.0 11 0.00024 35.4 6.5 84 80-164 45-151 (377)
94 TIGR01162 purE phosphoribosyla 72.9 9.5 0.00021 31.0 5.3 70 78-153 11-86 (156)
95 PRK06555 pyrophosphate--fructo 72.3 6 0.00013 37.5 4.6 55 102-158 99-156 (403)
96 cd08189 Fe-ADH5 Iron-containin 72.3 7.7 0.00017 36.4 5.4 92 63-158 28-143 (374)
97 cd08191 HHD 6-hydroxyhexanoate 71.9 9.1 0.0002 36.1 5.8 93 63-159 24-139 (386)
98 cd08195 DHQS Dehydroquinate sy 71.6 5.9 0.00013 36.7 4.4 83 63-151 26-119 (345)
99 PRK03202 6-phosphofructokinase 70.1 6.9 0.00015 35.9 4.4 53 102-159 80-132 (320)
100 cd00763 Bacterial_PFK Phosphof 68.2 9.1 0.0002 35.1 4.8 53 102-159 79-131 (317)
101 PRK00002 aroB 3-dehydroquinate 68.2 9.1 0.0002 35.7 4.9 88 63-156 33-133 (358)
102 cd08549 G1PDH_related Glycerol 67.4 13 0.00029 34.2 5.8 81 63-152 26-113 (332)
103 PRK14071 6-phosphofructokinase 67.2 11 0.00024 35.2 5.2 56 105-164 97-155 (360)
104 cd08178 AAD_C C-terminal alcoh 67.1 16 0.00035 34.6 6.4 69 63-135 23-97 (398)
105 COG0371 GldA Glycerol dehydrog 66.7 29 0.00062 32.4 7.7 77 81-161 46-126 (360)
106 cd08177 MAR Maleylacetate redu 65.9 18 0.00039 33.3 6.4 81 63-151 25-109 (337)
107 PF00365 PFK: Phosphofructokin 63.9 3.8 8.3E-05 36.9 1.4 50 106-159 83-132 (282)
108 TIGR01357 aroB 3-dehydroquinat 63.4 12 0.00027 34.5 4.8 84 62-151 21-115 (344)
109 cd08188 Fe-ADH4 Iron-containin 63.1 23 0.00049 33.3 6.6 79 80-159 44-145 (377)
110 cd08199 EEVS 2-epi-5-epi-valio 62.9 18 0.00039 33.7 5.8 84 62-151 27-122 (354)
111 PLN00180 NDF6 (NDH-dependent f 61.0 1.8 4E-05 34.6 -1.0 15 119-133 128-142 (180)
112 TIGR02478 6PF1K_euk 6-phosphof 59.7 15 0.00032 37.9 4.9 57 102-158 465-523 (745)
113 COG1646 Predicted phosphate-bi 59.3 17 0.00038 31.5 4.5 74 82-155 5-82 (240)
114 PF00465 Fe-ADH: Iron-containi 58.4 21 0.00045 33.3 5.4 95 63-161 23-141 (366)
115 PRK09423 gldA glycerol dehydro 57.3 18 0.00039 33.8 4.8 89 62-158 30-125 (366)
116 cd06167 LabA_like LabA_like pr 56.7 18 0.00039 28.7 4.1 36 104-139 88-123 (149)
117 COG0205 PfkA 6-phosphofructoki 56.4 22 0.00048 33.0 5.1 50 105-158 84-133 (347)
118 PF12219 End_tail_spike: Catal 56.2 7 0.00015 30.7 1.5 14 116-129 85-98 (160)
119 cd08175 G1PDH Glycerol-1-phosp 55.3 26 0.00056 32.4 5.5 81 63-152 25-113 (348)
120 PLN03028 pyrophosphate--fructo 54.5 20 0.00044 35.9 4.8 52 105-158 163-217 (610)
121 cd08193 HVD 5-hydroxyvalerate 54.4 46 0.00099 31.2 7.0 75 80-155 42-139 (376)
122 PRK10586 putative oxidoreducta 54.1 38 0.00082 31.7 6.3 69 82-155 51-122 (362)
123 PRK06203 aroB 3-dehydroquinate 54.0 29 0.00062 32.9 5.5 93 62-157 43-153 (389)
124 TIGR02477 PFKA_PPi diphosphate 53.7 20 0.00043 35.4 4.5 53 105-159 151-206 (539)
125 PRK15122 magnesium-transportin 51.6 25 0.00054 37.2 5.1 74 98-186 620-694 (903)
126 cd00764 Eukaryotic_PFK Phospho 51.5 26 0.00057 36.1 5.1 56 102-158 465-523 (762)
127 PRK07085 diphosphate--fructose 50.6 28 0.00061 34.5 5.1 53 105-158 154-208 (555)
128 cd00765 Pyrophosphate_PFK Phos 50.6 26 0.00056 34.7 4.8 53 106-160 157-212 (550)
129 PTZ00287 6-phosphofructokinase 50.4 17 0.00036 39.8 3.6 60 103-164 916-983 (1419)
130 TIGR02478 6PF1K_euk 6-phosphof 50.0 24 0.00052 36.4 4.6 54 105-158 84-155 (745)
131 PRK05948 precorrin-2 methyltra 49.5 1E+02 0.0022 27.0 7.9 50 114-165 91-145 (238)
132 PRK15454 ethanol dehydrogenase 48.5 55 0.0012 31.0 6.5 82 79-161 64-168 (395)
133 cd08184 Fe-ADH3 Iron-containin 46.7 91 0.002 28.9 7.6 46 115-161 81-143 (347)
134 COG1691 NCAIR mutase (PurE)-re 46.6 34 0.00073 29.7 4.2 32 117-154 175-206 (254)
135 cd00764 Eukaryotic_PFK Phospho 43.5 35 0.00076 35.2 4.6 55 104-158 86-158 (762)
136 PTZ00468 phosphofructokinase f 43.2 34 0.00074 37.2 4.6 51 107-159 188-241 (1328)
137 TIGR00725 conserved hypothetic 43.2 31 0.00067 28.1 3.5 49 101-153 17-65 (159)
138 PRK13805 bifunctional acetalde 42.3 55 0.0012 34.5 6.0 70 62-135 481-558 (862)
139 PF05893 LuxC: Acyl-CoA reduct 42.2 19 0.00042 34.1 2.4 38 116-153 169-210 (399)
140 cd01836 FeeA_FeeB_like SGNH_hy 41.2 50 0.0011 27.1 4.6 39 118-159 44-82 (191)
141 PF07015 VirC1: VirC1 protein; 40.8 1E+02 0.0022 26.9 6.5 96 62-160 1-101 (231)
142 PF01936 NYN: NYN domain; Int 39.9 33 0.00072 26.8 3.2 35 105-139 85-119 (146)
143 KOG1250|consensus 39.9 93 0.002 29.5 6.3 60 103-165 204-264 (457)
144 cd07025 Peptidase_S66 LD-Carbo 39.2 45 0.00097 29.9 4.2 67 67-135 3-82 (282)
145 PRK00536 speE spermidine synth 39.1 21 0.00046 31.8 2.0 18 116-133 74-92 (262)
146 TIGR01118 lacA galactose-6-pho 37.8 42 0.0009 26.9 3.3 33 79-111 13-51 (141)
147 PLN02251 pyrophosphate-depende 35.8 70 0.0015 31.9 5.2 57 103-161 178-237 (568)
148 TIGR01754 flav_RNR ribonucleot 34.7 45 0.00097 26.2 3.2 27 63-91 2-28 (140)
149 PRK09273 hypothetical protein; 34.4 49 0.0011 28.3 3.4 60 67-126 5-74 (211)
150 TIGR00288 conserved hypothetic 34.4 93 0.002 25.5 4.9 55 104-161 94-149 (160)
151 TIGR00730 conserved hypothetic 34.1 47 0.001 27.7 3.3 47 101-152 18-66 (178)
152 PF03641 Lysine_decarbox: Poss 34.1 54 0.0012 25.7 3.5 34 117-150 56-91 (133)
153 PRK08284 precorrin 6A synthase 34.0 80 0.0017 27.9 4.9 52 113-165 101-157 (253)
154 cd08198 DHQS-like2 Dehydroquin 33.8 1E+02 0.0022 29.0 5.7 87 63-152 32-134 (369)
155 COG1819 Glycosyl transferases, 32.3 86 0.0019 29.8 5.1 30 115-152 300-329 (406)
156 cd02812 PcrB_like PcrB_like pr 32.1 98 0.0021 26.8 4.9 50 105-156 15-67 (219)
157 PRK15473 cbiF cobalt-precorrin 30.8 58 0.0012 28.7 3.5 60 106-165 71-131 (257)
158 PLN02834 3-dehydroquinate synt 30.7 1.2E+02 0.0026 29.2 5.8 35 116-152 164-198 (433)
159 PRK10517 magnesium-transportin 30.5 82 0.0018 33.4 5.1 75 97-186 619-694 (902)
160 COG1611 Predicted Rossmann fol 29.9 75 0.0016 27.1 3.9 46 102-152 34-80 (205)
161 COG1432 Uncharacterized conser 29.8 1.5E+02 0.0032 24.6 5.6 48 102-153 97-144 (181)
162 PTZ00468 phosphofructokinase f 29.8 71 0.0015 34.9 4.4 46 113-159 798-850 (1328)
163 cd04502 SGNH_hydrolase_like_7 29.2 86 0.0019 25.2 4.1 38 120-159 28-65 (171)
164 PTZ00287 6-phosphofructokinase 28.5 73 0.0016 35.2 4.2 54 104-158 260-315 (1419)
165 TIGR00725 conserved hypothetic 28.3 77 0.0017 25.8 3.5 30 117-151 94-123 (159)
166 cd08196 DHQS-like1 Dehydroquin 28.2 1.8E+02 0.0038 27.0 6.3 83 63-151 21-110 (346)
167 COG0474 MgtA Cation transport 28.0 84 0.0018 33.4 4.6 87 84-187 609-697 (917)
168 TIGR01768 GGGP-family geranylg 28.0 58 0.0012 28.3 2.9 49 103-151 15-63 (223)
169 PRK12613 galactose-6-phosphate 27.9 74 0.0016 25.4 3.3 19 144-162 55-73 (141)
170 PRK03743 pdxA 4-hydroxythreoni 27.0 28 0.00061 32.1 0.8 62 61-122 202-266 (332)
171 TIGR03590 PseG pseudaminic aci 26.2 1.7E+02 0.0037 26.0 5.8 27 116-151 242-268 (279)
172 TIGR01426 MGT glycosyltransfer 25.9 1.6E+02 0.0034 27.4 5.8 29 116-152 292-320 (392)
173 TIGR00730 conserved hypothetic 25.8 1.6E+02 0.0035 24.4 5.1 33 117-149 99-132 (178)
174 COG1171 IlvA Threonine dehydra 25.5 1.9E+02 0.004 27.0 5.8 59 103-164 164-223 (347)
175 COG1049 AcnB Aconitase B [Ener 25.4 48 0.001 33.0 2.0 46 118-163 460-514 (852)
176 cd06341 PBP1_ABC_ligand_bindin 25.4 1.2E+02 0.0026 27.4 4.7 35 104-139 177-212 (341)
177 TIGR01517 ATPase-IIB_Ca plasma 25.3 1.4E+02 0.003 31.9 5.7 75 97-186 650-726 (941)
178 PRK11104 hemG protoporphyrinog 24.7 1.3E+02 0.0029 24.8 4.4 80 62-152 1-87 (177)
179 PRK11572 copper homeostasis pr 24.6 2.1E+02 0.0046 25.2 5.8 38 114-153 140-178 (248)
180 TIGR02434 CobF precorrin-6A sy 24.3 90 0.002 27.5 3.5 51 114-165 101-156 (249)
181 PRK00232 pdxA 4-hydroxythreoni 24.3 36 0.00077 31.4 1.0 63 60-122 201-266 (332)
182 PF04101 Glyco_tran_28_C: Glyc 24.2 63 0.0014 26.0 2.4 30 116-153 73-102 (167)
183 cd01844 SGNH_hydrolase_like_6 23.9 74 0.0016 25.9 2.7 55 118-183 35-89 (177)
184 PRK03371 pdxA 4-hydroxythreoni 22.5 37 0.00081 31.2 0.7 63 60-122 200-265 (326)
185 PRK05788 cobalamin biosynthesi 22.5 1.7E+02 0.0038 26.7 5.1 59 78-138 16-74 (315)
186 TIGR01752 flav_long flavodoxin 22.5 4.2E+02 0.009 21.4 7.3 77 64-152 2-87 (167)
187 COG1979 Uncharacterized oxidor 22.4 1.3E+02 0.0027 27.9 4.0 57 63-124 31-94 (384)
188 TIGR01524 ATPase-IIIB_Mg magne 22.3 1.5E+02 0.0033 31.3 5.2 73 98-185 585-658 (867)
189 TIGR00557 pdxA 4-hydroxythreon 22.2 37 0.0008 31.2 0.6 63 60-122 194-259 (320)
190 TIGR00732 dprA DNA protecting 22.1 1.3E+02 0.0029 25.8 4.1 46 104-154 63-109 (220)
191 PRK14021 bifunctional shikimat 22.1 1.6E+02 0.0035 29.2 5.1 35 115-151 269-303 (542)
192 PRK09271 flavodoxin; Provision 21.8 53 0.0011 26.6 1.4 83 62-152 1-94 (160)
193 PRK01909 pdxA 4-hydroxythreoni 21.7 40 0.00086 31.1 0.7 62 61-122 198-262 (329)
194 COG0041 PurE Phosphoribosylcar 21.6 1E+02 0.0022 25.0 2.9 44 78-121 15-63 (162)
195 PF01965 DJ-1_PfpI: DJ-1/PfpI 21.5 38 0.00082 26.8 0.5 46 114-160 36-87 (147)
196 TIGR01647 ATPase-IIIA_H plasma 21.3 1.3E+02 0.0029 31.1 4.5 83 86-185 507-590 (755)
197 cd06300 PBP1_ABC_sugar_binding 20.8 2.8E+02 0.0062 23.7 6.1 67 79-149 16-91 (272)
198 cd07062 Peptidase_S66_mccF_lik 20.6 1.4E+02 0.003 27.1 4.1 69 66-135 4-86 (308)
199 PF01761 DHQ_synthase: 3-dehyd 20.6 1.8E+02 0.0039 25.8 4.6 34 116-151 30-63 (260)
200 PF13778 DUF4174: Domain of un 20.4 86 0.0019 24.0 2.3 68 62-129 10-92 (118)
201 COG2242 CobL Precorrin-6B meth 20.4 89 0.0019 26.3 2.5 30 106-138 95-124 (187)
202 PLN02948 phosphoribosylaminoim 20.3 1.7E+02 0.0037 29.3 4.9 85 60-154 409-499 (577)
203 TIGR01465 cobM_cbiF precorrin- 20.3 1.7E+02 0.0038 24.9 4.5 59 103-165 59-122 (229)
204 PF10781 DSRB: Dextransucrase 20.2 1.5E+02 0.0032 19.7 2.9 46 267-312 4-57 (62)
205 COG2185 Sbm Methylmalonyl-CoA 20.2 2.1E+02 0.0046 22.9 4.5 72 59-136 10-84 (143)
206 PF01884 PcrB: PcrB family; I 20.1 1.6E+02 0.0035 25.7 4.1 40 111-153 28-69 (230)
No 1
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=2.6e-45 Score=334.08 Aligned_cols=221 Identities=21% Similarity=0.238 Sum_probs=189.9
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
+++++|+||.||++++.+.++++.+.|+... +..+.|+.++|+.++++++..+++|.||++|||||+|||+|++...
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~~- 87 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAGT- 87 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhccC-
Confidence 4899999999999998888888888887643 3334677799999999988777789999999999999999999754
Q ss_pred CCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeee
Q psy16024 140 LDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSI 219 (316)
Q Consensus 140 ~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~gi 219 (316)
++|||+||+||+|||||+||++. .+++++++.+.+++++++|+++++.... ..++|+|++|+
T Consensus 88 ---~~~lgiiP~GT~NdfAr~lg~~~------~~~~~a~~~i~~g~~~~iDlg~v~~~~~---------~~~~f~n~~~~ 149 (306)
T PRK11914 88 ---DIPLGIIPAGTGNDHAREFGIPT------GDPEAAADVIVDGWTETVDLGRIQDDDG---------IVKWFGTVAAT 149 (306)
T ss_pred ---CCcEEEEeCCCcchhHHHcCCCC------CCHHHHHHHHHcCCceEEEEEEEecCCC---------CcEEEEEEEee
Confidence 58999999999999999999974 2689999999999999999999974221 24799999999
Q ss_pred eeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECC-eeecCCCceeEEEEccccccCC
Q psy16024 220 GVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDG-ERVDLPPIESVVVLNIPSWASG 298 (316)
Q Consensus 220 G~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg-~~~~~~~~~~~~v~N~~~~ggg 298 (316)
||||.|+...++.+ ..+|+++|.+++++.+++.+ ++++++++|| +..+. ++.++.|+|+++||||
T Consensus 150 G~~a~v~~~~~~~k---------~~~G~~aY~~~~l~~l~~~~----~~~~~i~~dg~~~~~~-~~~~~~v~N~~~~GG~ 215 (306)
T PRK11914 150 GFDSLVTDRANRMR---------WPHGRMRYNLAMLAELSKLR----PLPFRLVLDGTEEIVT-DLTLAAFGNTRSYGGG 215 (306)
T ss_pred ehHHHHHHHHHhcc---------ccCCchhhHHHHHHHHHhcC----CCcEEEEEeCCeEEEe-eEEEEEEeCcccccCC
Confidence 99999987765432 23699999999999998865 6889999999 56654 6888999999999999
Q ss_pred CCCCCCCCCCCCCcccc
Q psy16024 299 VDLWKLGRGQKSPFTLT 315 (316)
Q Consensus 299 ~~~~p~a~~~DG~ldv~ 315 (316)
+.++|.|+++||+|||+
T Consensus 216 ~~~~p~a~~~DG~ldv~ 232 (306)
T PRK11914 216 MLICPNADHTDGLLDIT 232 (306)
T ss_pred ceeCCCCcCCCCcEEEE
Confidence 99999999999999986
No 2
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=6.5e-45 Score=329.34 Aligned_cols=217 Identities=18% Similarity=0.166 Sum_probs=181.9
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKL 140 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~ 140 (316)
++++|+||+||..+ .+.++.+.|.+.+ +....|+.++|+.++++++..+++|.|+++|||||+|||+|+|...+.
T Consensus 1 ~~~~I~N~~~~~~~---~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~~ 77 (293)
T TIGR03702 1 KALLILNGKQADNE---DVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIRD 77 (293)
T ss_pred CEEEEEeCCccchh---HHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhCC
Confidence 36899999987332 4556666676543 223367788999999998866668999999999999999999986543
Q ss_pred CCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeeee
Q psy16024 141 DPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIG 220 (316)
Q Consensus 141 ~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~giG 220 (316)
...+|||+||+||||||||+||++. ++.++++.+.+++++++|++.++ ..++|+|++|+|
T Consensus 78 ~~~~~lgiiP~GTgNdfAr~l~ip~-------~~~~a~~~i~~g~~~~iDlg~v~-------------~~~~f~n~~~~G 137 (293)
T TIGR03702 78 DAAPALGLLPLGTANDFATAAGIPL-------EPAKALKLALNGAAQPIDLARVN-------------GKHYFLNMATGG 137 (293)
T ss_pred CCCCcEEEEcCCchhHHHHhcCCCC-------CHHHHHHHHHhCCceeeeEEEEC-------------CccEEEEEeecc
Confidence 3357899999999999999999987 89999999999999999999986 236999999999
Q ss_pred eeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCCCC
Q psy16024 221 VDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVD 300 (316)
Q Consensus 221 ~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg~~ 300 (316)
|||+|+.+++... ++.+|+++|++++++.+++++ +++++++.|++++.. +..+++|+|++|||||+.
T Consensus 138 ~da~v~~~~~~~~--------k~~~G~~aY~~~~l~~l~~~~----~~~~~i~~~~~~~~~-~~~~~~v~N~~~~GGg~~ 204 (293)
T TIGR03702 138 FGTRVTTETSEKL--------KKALGGAAYLITGLTRFSELT----AASCEFRGPDFHWEG-DFLALGIGNGRQAGGGQV 204 (293)
T ss_pred cchHhhhhhhHHH--------HhccchHHHHHHHHHHHhhCC----CeEEEEEECCEEEEe-eEEEEEEECCCcCCCCce
Confidence 9999998766533 345799999999999998765 578888888877654 578889999999999999
Q ss_pred CCCCCCCCCCCcccc
Q psy16024 301 LWKLGRGQKSPFTLT 315 (316)
Q Consensus 301 ~~p~a~~~DG~ldv~ 315 (316)
++|.|+++||+|||+
T Consensus 205 i~P~A~~~DG~Ldv~ 219 (293)
T TIGR03702 205 LCPDALINDGLLDVR 219 (293)
T ss_pred eCCCCccCCceEEEE
Confidence 999999999999996
No 3
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.6e-44 Score=325.96 Aligned_cols=210 Identities=22% Similarity=0.288 Sum_probs=183.0
Q ss_pred cccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCC
Q psy16024 65 LGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDP 142 (316)
Q Consensus 65 ~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~ 142 (316)
++|+||.||+++ +.++++++.|...+ +....|+.++++.++++++. .++|.|+++|||||||||+|++...
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~-~~~d~iiv~GGDGTv~~v~~~l~~~---- 73 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAAGLELVEPPAEDPDDLSEVIEAYA-DGVDLVIVGGGDGTLNAAAPALVET---- 73 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH-cCCCEEEEECchHHHHHHHHHHhcC----
Confidence 579999999876 46788888887653 44456788999999998854 4489999999999999999999865
Q ss_pred CCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeeeeee
Q psy16024 143 APSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVD 222 (316)
Q Consensus 143 ~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~giG~d 222 (316)
++|||+||+||+|||||+||++. ++.++++.|..++++++|+++++ .+||+|++|+|+|
T Consensus 74 ~~~lgiiP~GT~Ndfar~Lg~~~-------~~~~a~~~i~~~~~~~vD~g~~~--------------~~~f~n~~g~G~d 132 (287)
T PRK13057 74 GLPLGILPLGTANDLARTLGIPL-------DLEAAARVIATGQVRRIDLGWVN--------------GHYFFNVASLGLS 132 (287)
T ss_pred CCcEEEECCCCccHHHHHcCCCC-------CHHHHHHHHHcCCeEEeeEEEEC--------------CEEEEEEEecCcc
Confidence 58999999999999999999986 89999999999999999999995 4799999999999
Q ss_pred eeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCCCCCC
Q psy16024 223 AQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLW 302 (316)
Q Consensus 223 A~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg~~~~ 302 (316)
|+++..++..+ ++.+|+++|++.+++.+++.+ ++++++++||+.... +..+++|+|++|||||+.++
T Consensus 133 a~v~~~~~~~~--------k~~~G~~aY~~~~~~~l~~~~----~~~~~l~~d~~~~~~-~~~~~~v~N~~~~gg~~~~~ 199 (287)
T PRK13057 133 AELARRLTKEL--------KRRWGTLGYAIAALRVLRRSR----PFTAEIEHDGRTERV-KTLQVAVGNGRYYGGGMTVA 199 (287)
T ss_pred HHHHHHhhHHh--------hccCChhHHHHHHHHHHhhCC----CeEEEEEECCEEEEE-EEEEEEEecCcccCCCcccC
Confidence 99998766543 245799999999999998865 688899999988776 57788899999999999999
Q ss_pred CCCCCCCCCcccc
Q psy16024 303 KLGRGQKSPFTLT 315 (316)
Q Consensus 303 p~a~~~DG~ldv~ 315 (316)
|.++++||+|||+
T Consensus 200 p~a~~~DG~ldv~ 212 (287)
T PRK13057 200 HDATIDDGRLDLY 212 (287)
T ss_pred CCCCCCCceEEEE
Confidence 9999999999986
No 4
>KOG1169|consensus
Probab=100.00 E-value=1.1e-44 Score=342.24 Aligned_cols=242 Identities=43% Similarity=0.738 Sum_probs=206.2
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCC-hHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKS-PEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLD 141 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~-~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~ 141 (316)
+++||+||+||+.++..+.++++.+|++.||+++...+ |..+..+++++.. .+|+|||||||+.||++.+.+....
T Consensus 273 PLlVfvNpKSGg~~G~~ll~~f~~lLnp~QVfdl~~~~~p~~gL~l~~~~~~---~riLVcGGDGTvGWVL~~i~~~n~~ 349 (634)
T KOG1169|consen 273 PLLVFVNPKSGGQQGERLLRRFRYLLNPVQVFDLLKRGGPRPGLTLFRDVPD---FRILVCGGDGTVGWVLGCIDKLNKQ 349 (634)
T ss_pred ceEEEEecCCcccccHHHHHHHHHhcChhhEEecccCCCCchhHHHHHhCCc---ceEEEecCCCcchhhhhhHHHhhcc
Confidence 89999999999999999999999999999999987764 8899999999886 4999999999999999999885322
Q ss_pred ---CCCcEEEecCCCcchhhhhhCCCCCCCCCCC-CHHHHHHHHHccCCcceeeEEEEEeechhhhh--------h-ccc
Q psy16024 142 ---PAPSVGIIPLGTGNDLSRVLGWGKLYDRDTC-SPFQILDNLTRSKVAHLDRWSVQIKSIRQLRL--------T-RAL 208 (316)
Q Consensus 142 ---~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~-~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~--------~-~~~ 208 (316)
..||+||+|+|||||++|.|+|+.+++ ++. ++..+++.+..+.+.++|.|+|.+...+.... + .+.
T Consensus 350 ~~~~~PpVAilPLGTGNDLsR~l~WGgg~~-g~~~~~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~~~~~~~~~~~~~~ 428 (634)
T KOG1169|consen 350 NAIPPPPVAILPLGTGNDLSRVLRWGGGYP-GEDRNLIKILKDIEEAPVTKLDRWKVLVEPQSGELVQYSLKPPEKGDPV 428 (634)
T ss_pred ccCCCCCeEEEecCCCCchHhhcCCCCCCC-cchhhHHHHHHhhhhccceecceeeEEeeccccccccccccCCCcCCCC
Confidence 478999999999999999999999987 432 28899999999999999999998776542210 0 112
Q ss_pred ceeEEEeeeeeeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccc--cEEEEECCeeecCC-Cce
Q psy16024 209 KCRWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQ--RIELYLDGERVDLP-PIE 285 (316)
Q Consensus 209 ~~~~f~n~~giG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~--~~~i~~dg~~~~~~-~~~ 285 (316)
...+|.||||||+||.|+++||..|+++|++|.+|+.||+.|+..|.+..|..+|+.+.. .+++..|++.++.| ++.
T Consensus 429 ~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~~f~~~ck~~~~~i~i~~~~d~~dl~~p~sle 508 (634)
T KOG1169|consen 429 PYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQETFAARCKNLHLHIKIELDGDGEDLELPKSLE 508 (634)
T ss_pred CeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchhhHHHhhcCCccceEEEEcccceEccCCCCce
Confidence 356899999999999999999999999999999999999999999977777667666434 45555577888887 899
Q ss_pred eEEEEccccccCCCCCCCCCCCC
Q psy16024 286 SVVVLNIPSWASGVDLWKLGRGQ 308 (316)
Q Consensus 286 ~~~v~N~~~~ggg~~~~p~a~~~ 308 (316)
.|++.|+||||||.++|...+.+
T Consensus 509 GIv~LNIpS~ggG~nlWg~~~~~ 531 (634)
T KOG1169|consen 509 GIVVLNIPSWGGGSNLWGNSNKS 531 (634)
T ss_pred eEEEEcccccccCcccccccCcc
Confidence 99999999999999999964433
No 5
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.5e-44 Score=327.11 Aligned_cols=216 Identities=19% Similarity=0.182 Sum_probs=180.2
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
.++++|+||.||++++.+.++++++.|.+.+ +....+....+ .+.++++..+++|.|+++|||||+|||+|++.+.
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~- 79 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYD-LKNAFKDIDESYKYILIAGGDGTVDNVVNAMKKL- 79 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcch-HHHHHHHhhcCCCEEEEECCccHHHHHHHHHHhc-
Confidence 3688999999999988778888888887653 22223333333 3445555555689999999999999999999865
Q ss_pred CCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeee
Q psy16024 140 LDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSI 219 (316)
Q Consensus 140 ~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~gi 219 (316)
+.++|||+||+||||||||+||++. ++.++++.|..++++++|+++++ +++|+|++|+
T Consensus 80 -~~~~~lgviP~GTgNdfAr~lgi~~-------~~~~a~~~i~~g~~~~vDlg~v~--------------~~~f~n~~~~ 137 (295)
T PRK13059 80 -NIDLPIGILPVGTANDFAKFLGMPT-------DIGEACEQILKSKPKKVDLGKIN--------------DKYFINVAST 137 (295)
T ss_pred -CCCCcEEEECCCCHhHHHHHhCCCC-------CHHHHHHHHHhCCcEEeeEEEEC--------------CEEEEEEEee
Confidence 2368999999999999999999987 89999999999999999999996 4799999999
Q ss_pred eeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCCC
Q psy16024 220 GVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGV 299 (316)
Q Consensus 220 G~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg~ 299 (316)
|+||+++..++... ++.+|+++|++.+++.+++++ ++++++++||+..+. +..+++|+|++|+|| +
T Consensus 138 G~~a~v~~~~~~~~--------k~~~G~~aY~~~~~~~l~~~~----~~~~~i~~d~~~~~~-~~~~~~v~N~~~~Gg-~ 203 (295)
T PRK13059 138 GLFTDVSQKTDVNL--------KNTIGKLAYYLKGLEELPNFR----KLKVKVTSEEVNFDG-DMYLMLVFNGQTAGN-F 203 (295)
T ss_pred eechhhhhhccHHH--------hhCcchHHHHHHHHHHHhcCC----CeeEEEEECCEEEEe-eEEEEEEEcCccccC-c
Confidence 99999998765432 245799999999999998765 678999999998876 577888999999885 6
Q ss_pred CCCCCCCCCCCCcccc
Q psy16024 300 DLWKLGRGQKSPFTLT 315 (316)
Q Consensus 300 ~~~p~a~~~DG~ldv~ 315 (316)
.++|.|+++||+|||+
T Consensus 204 ~~~p~a~~~DG~Ldv~ 219 (295)
T PRK13059 204 NLAYKAEVDDGLLDVI 219 (295)
T ss_pred ccCCcccCCCCeEEEE
Confidence 9999999999999986
No 6
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.6e-44 Score=331.90 Aligned_cols=220 Identities=19% Similarity=0.213 Sum_probs=188.3
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCceE--EEc-ccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQV--VDL-ADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v--~~~-~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
++++||+||.||++++.+.++++++.|....+ ... ++..++|+.++++++..+++|.||++|||||+|||+|+|...
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~~ 82 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAPL 82 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhhc
Confidence 47899999999999988889999998876543 222 344567899999888776789999999999999999999865
Q ss_pred CCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeee
Q psy16024 139 KLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLS 218 (316)
Q Consensus 139 ~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~g 218 (316)
+..++||+||+||+|||||+||++. .++.++++.+.+++++++|++.++ .++||+|++|
T Consensus 83 --~~~~~LgiiP~GTgNdfAr~Lgi~~------~~~~~a~~~l~~g~~~~vD~g~v~-------------~~~~F~n~ag 141 (334)
T PRK13055 83 --EKRPKMAIIPAGTTNDYARALKIPR------DNPVEAAKVILKNQTIKMDIGRAN-------------EDKYFINIAA 141 (334)
T ss_pred --CCCCcEEEECCCchhHHHHHcCCCC------cCHHHHHHHHHcCCcEEeeEEEEC-------------CCcEEEEEeh
Confidence 2358999999999999999999975 158999999999999999999995 2579999999
Q ss_pred eeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCC
Q psy16024 219 IGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASG 298 (316)
Q Consensus 219 iG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg 298 (316)
+|+||+++...+... ++.+|+++|++++++.+++++ ++++++++||+.... +..+++++|+++|||+
T Consensus 142 ~G~da~v~~~~~~~~--------k~~~G~laY~~~~~~~l~~~~----~~~~~i~~d~~~~~~-~~~~~~v~n~~~~Gg~ 208 (334)
T PRK13055 142 GGSLTELTYSVPSQL--------KSMFGYLAYLAKGAELLPRVS----PVPVRITYDEGVFEG-KISMFFLALTNSVGGF 208 (334)
T ss_pred hccchHHHHhcCHHH--------HhhccHHHHHHHHHHHHHhcC----CeeEEEEECCEEEEE-EEEEEEEEcCcccCCc
Confidence 999999997765443 245799999999999998875 688999999987665 5677889999999999
Q ss_pred CCCCCCCCCCCCCcccc
Q psy16024 299 VDLWKLGRGQKSPFTLT 315 (316)
Q Consensus 299 ~~~~p~a~~~DG~ldv~ 315 (316)
+.++|.|+++||+|||+
T Consensus 209 ~~~~p~a~~~DG~ldv~ 225 (334)
T PRK13055 209 EQIVPDAKLDDGKFTLI 225 (334)
T ss_pred cccCCCCcCCCceEEEE
Confidence 99999999999999986
No 7
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.6e-44 Score=328.45 Aligned_cols=218 Identities=20% Similarity=0.164 Sum_probs=189.1
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
+++++|+||+||++++.+.++++.+.|.+.+ +....|+.++|+.++++++..+++|.||++|||||||+|+|+|...+
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~~ 81 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEKE 81 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhCC
Confidence 3688999999999887777888888777654 33346778899999999887777899999999999999999998762
Q ss_pred CCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeee
Q psy16024 140 LDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSI 219 (316)
Q Consensus 140 ~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~gi 219 (316)
.++|||+||.||+|||||+||++. +++++++.+.++.++++|+++++ .++|+|++|+
T Consensus 82 --~~~~lgiiP~GT~NdfAr~lgi~~-------~~~~a~~~i~~g~~~~vDlg~vn--------------~~~fln~~g~ 138 (304)
T PRK13337 82 --NRPKLGIIPVGTTNDFARALHVPR-------DIEKAADVIIEGHTVPVDIGKAN--------------NRYFINIAGG 138 (304)
T ss_pred --CCCcEEEECCcCHhHHHHHcCCCC-------CHHHHHHHHHcCCeEEEEEEEEC--------------CEEEEeeehh
Confidence 358999999999999999999986 89999999999999999999996 4799999999
Q ss_pred eeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCCC
Q psy16024 220 GVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGV 299 (316)
Q Consensus 220 G~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg~ 299 (316)
|+||+++.+.+... ++.+|+++|++.+++.+++++ ++++++++||+..+. +..+++|+|+++|||++
T Consensus 139 G~~a~v~~~~~~~~--------k~~~G~~aY~~~~~~~l~~~~----~~~~~i~~d~~~~~~-~~~~~~v~n~~~~gg~~ 205 (304)
T PRK13337 139 GRLTELTYEVPSKL--------KTMLGQLAYYLKGIEMLPSLK----ATDVRIEYDGKLFQG-EIMLFLLGLTNSVGGFE 205 (304)
T ss_pred hHHHHHHHhcCHHH--------hcCcccHHHHHHHHHHHhhCC----CceEEEEECCeEEEe-EEEEEEEEcCcccCCcc
Confidence 99999997655422 346899999999999888765 678899999987765 57788999999999999
Q ss_pred CCCCCCCCCCCCcccc
Q psy16024 300 DLWKLGRGQKSPFTLT 315 (316)
Q Consensus 300 ~~~p~a~~~DG~ldv~ 315 (316)
.++|.++++||+|||+
T Consensus 206 ~~~p~a~~~DG~ldv~ 221 (304)
T PRK13337 206 KLAPDASLDDGYFDLI 221 (304)
T ss_pred ccCCcccCCCCeEEEE
Confidence 9999999999999986
No 8
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=1e-43 Score=322.52 Aligned_cols=218 Identities=20% Similarity=0.182 Sum_probs=183.6
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
+++++|+||+++. .+.+.++.+.|.+.+ +....|+.++|+.++++++..+++|.||++|||||+|||+|+|...+
T Consensus 4 ~~~~~i~N~~~~~---~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~~ 80 (300)
T PRK13054 4 PKSLLILNGKSAG---NEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQLE 80 (300)
T ss_pred ceEEEEECCCccc---hHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhhc
Confidence 4788999998763 345666666676543 33346778899999998876666899999999999999999998653
Q ss_pred CCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeee
Q psy16024 140 LDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSI 219 (316)
Q Consensus 140 ~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~gi 219 (316)
.+.++|||+||+||||||||+||++. ++.++++.+.++.++++|+++++ ..++|+|++|+
T Consensus 81 ~~~~~~lgiiP~GTgNdfar~lgi~~-------~~~~a~~~i~~g~~~~iDlg~v~-------------~~~~f~n~~~~ 140 (300)
T PRK13054 81 GDARPALGILPLGTANDFATAAGIPL-------EPDKALKLAIEGRAQPIDLARVN-------------DRTYFINMATG 140 (300)
T ss_pred cCCCCcEEEEeCCcHhHHHHhcCCCC-------CHHHHHHHHHhCCceEEEEEEEc-------------CceEEEEEeec
Confidence 23468999999999999999999986 89999999999999999999996 23499999999
Q ss_pred eeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCCC
Q psy16024 220 GVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGV 299 (316)
Q Consensus 220 G~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg~ 299 (316)
||||+++.+.++.. ++.+|+++|.+.+++.+++++ +++++++.|++.++. +..+++|+|++|||||+
T Consensus 141 G~~a~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~~~~----~~~~~i~~d~~~~~~-~~~~~~v~N~~~~ggg~ 207 (300)
T PRK13054 141 GFGTRVTTETPEKL--------KAALGGVAYLIHGLMRMDTLK----PDRCEIRGPDFHWQG-DALVIGIGNGRQAGGGQ 207 (300)
T ss_pred chhHHHHHhhHHHH--------HhccchHHHHHHHHHHHhhCC----CeEEEEEeCCcEEEe-eEEEEEEECCCcCCCCc
Confidence 99999998765422 245899999999999998775 688899999987765 68889999999999999
Q ss_pred CCCCCCCCCCCCcccc
Q psy16024 300 DLWKLGRGQKSPFTLT 315 (316)
Q Consensus 300 ~~~p~a~~~DG~ldv~ 315 (316)
.++|.|+++||+|||+
T Consensus 208 ~~~p~a~~~DG~ldv~ 223 (300)
T PRK13054 208 QLCPEALINDGLLDLR 223 (300)
T ss_pred ccCCCCcCCCCeEEEE
Confidence 9999999999999986
No 9
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=1.3e-42 Score=331.38 Aligned_cols=257 Identities=19% Similarity=0.161 Sum_probs=199.0
Q ss_pred ccccceEEEEechHHHHHhhccChhhceeeecCCeeecCCCceeeeecCCCCCCCCCCccccccccCCCCCCCCcchHH-
Q psy16024 4 AFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWKLGRGNRKSGNGDGSHILS- 82 (316)
Q Consensus 4 r~~nk~~y~~~~~~~~~~~~~~~l~~~i~l~~d~~~~~lp~l~~i~~~ni~s~~~g~~~~~~vivNp~sG~~~~~~~~~- 82 (316)
|+..|-+-|..-..+.++..|..+.+.+. +. +...+++||+||.||++++.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----------------------~~--~~~kr~lvIvNP~SGkg~a~k~~~~ 133 (481)
T PLN02958 78 ALARKDFVFEPLSDESRRLWCQKLRDYLD----------------------SL--GRPKRLLVFVNPFGGKKSASKIFFD 133 (481)
T ss_pred CceeeeEEEeCCCHHHHHHHHHHHHHHHh----------------------hc--cCCcEEEEEEcCCCCCcchhHHHHH
Confidence 56667766766666777777777766431 00 234589999999999999888765
Q ss_pred HHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCC---CCCCcEEEecCCCcchh
Q psy16024 83 TFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKL---DPAPSVGIIPLGTGNDL 157 (316)
Q Consensus 83 ~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~---~~~~~lgiiP~GTgNd~ 157 (316)
.++++|+..+ +..+.|++++||.++++++...++|.||++|||||+|||+|||..++. ..++|||+||+||||||
T Consensus 134 ~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdf 213 (481)
T PLN02958 134 VVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGM 213 (481)
T ss_pred HHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchh
Confidence 5888887654 334478889999999999876779999999999999999999987632 23689999999999999
Q ss_pred hhhh----CCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeeeeeeeeeeccchhhh
Q psy16024 158 SRVL----GWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDAQVALDFHNTR 233 (316)
Q Consensus 158 Ar~l----g~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~giG~dA~v~~~~~~~r 233 (316)
||+| |++. ++.+|+..|.+|.++++|+++++... ..++++|++|+||||+|....+.
T Consensus 214 ArsL~~~~gip~-------~~~~A~~~I~~g~~~~vDlg~v~~~~----------~~~f~vn~~g~GfdAdV~~~se~-- 274 (481)
T PLN02958 214 AKSLLDSVGEPC-------SATNAVLAIIRGHKCSLDVATILQGE----------TKFFSVLMLAWGLVADIDIESEK-- 274 (481)
T ss_pred hhhhccccCCCc-------CHHHHHHHHHcCCceEEeEEEEEcCC----------ceEEEEEeeeeehhhhhhccccc--
Confidence 9999 8876 89999999999999999999996211 22345899999999999765433
Q ss_pred ccccccccccccccchhhhhhhHHHhhccccCccccEEEEE---------------CCe----e---------ecCC---
Q psy16024 234 ESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYL---------------DGE----R---------VDLP--- 282 (316)
Q Consensus 234 ~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~---------------dg~----~---------~~~~--- 282 (316)
+|++|+++|.+++++.+++.+ .+++++++ +++ + ++.+
T Consensus 275 --------kr~lG~lrY~~~~l~~l~~~r----~y~~~I~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (481)
T PLN02958 275 --------YRWMGSARLDFYGLQRILCLR----QYNGRISFVPAPGFEAYGEPTSYNGESTSKEESGKDKQHGYQGPDVK 342 (481)
T ss_pred --------ccccchHHHHHHHHHHHHhcC----CcceEEEEEeccccccccccccccccccccccccccccccccCCccc
Confidence 346899999999999999875 45555552 221 0 0000
Q ss_pred ---------C--ceeEEEEccccccCCCCCCCCCCCCCCCcccc
Q psy16024 283 ---------P--IESVVVLNIPSWASGVDLWKLGRGQKSPFTLT 315 (316)
Q Consensus 283 ---------~--~~~~~v~N~~~~ggg~~~~p~a~~~DG~ldv~ 315 (316)
+ +..++++|++|+|||+.++|.|+++||+|||+
T Consensus 343 ~~~~~w~~~~~~fl~v~v~N~~~~Ggg~~iaP~A~l~DG~LDlv 386 (481)
T PLN02958 343 LENLDWRTIKGPFVSVWLHNVPWGGEDTLAAPDAKFSDGYLDLI 386 (481)
T ss_pred cCCccceEeecceeEEeeccCcccCCCcccCCcccCCCCeEEEE
Confidence 1 22245899999999999999999999999986
No 10
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=3.8e-43 Score=318.99 Aligned_cols=216 Identities=21% Similarity=0.183 Sum_probs=183.1
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCc-eEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPL-QVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKL 140 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~-~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~ 140 (316)
+++++|+||.||++++.+.++++++.|++. ++....|+.++|+.++++++..+++|.|+++|||||+|||+|+|...
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~~~-- 80 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAGALIGT-- 80 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHhcC--
Confidence 368899999999998877788888888653 33334677889999999998777789999999999999999999865
Q ss_pred CCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeeee
Q psy16024 141 DPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIG 220 (316)
Q Consensus 141 ~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~giG 220 (316)
+++||+||+||||||||+||++. ++.++++.+.++.++++|+++++ .++|+|++|+|
T Consensus 81 --~~~lgviP~GTgNdfAr~lgi~~-------~~~~a~~~i~~g~~~~iDlg~vn--------------~~~fin~a~~G 137 (300)
T PRK00861 81 --DIPLGIIPRGTANAFAAALGIPD-------TIEEACRTILQGKTRRVDVAYCN--------------GQPMILLAGIG 137 (300)
T ss_pred --CCcEEEEcCCchhHHHHHcCCCC-------CHHHHHHHHHcCCcEEeeEEEEC--------------CEEEEEEEecc
Confidence 58999999999999999999987 89999999999999999999995 47999999999
Q ss_pred eeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCCCC
Q psy16024 221 VDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVD 300 (316)
Q Consensus 221 ~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg~~ 300 (316)
|||+++...++.. ++.+|+++|++.+++.+++++ +++++++.||+..+. +..+++|+|++++++.+.
T Consensus 138 ~~a~v~~~~~~~~--------k~~~G~~aY~~~~l~~l~~~~----~~~~~i~~dg~~~~~-~~~~i~v~N~~~~~~~~~ 204 (300)
T PRK00861 138 FEAETVEEADREA--------KNRFGILAYILSGLQQLRELE----SFEVEIETEDQIITT-NAVAVTVANAAPPTSVLA 204 (300)
T ss_pred HHHHHHHHhhHHH--------HhcccHHHHHHHHHHHhccCC----CeeEEEEECCeEEEE-EEEEEEEECCCCcccccc
Confidence 9999998765543 245799999999999998875 688999999987765 577899999985533221
Q ss_pred -CCCCCCCCCCCcccc
Q psy16024 301 -LWKLGRGQKSPFTLT 315 (316)
Q Consensus 301 -~~p~a~~~DG~ldv~ 315 (316)
-.|.|+++||+|||+
T Consensus 205 ~g~p~a~~~DG~ldv~ 220 (300)
T PRK00861 205 QGPGAVIPDDGLLDVT 220 (300)
T ss_pred cCCCCCCCCCceEEEE
Confidence 257999999999986
No 11
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=9.1e-43 Score=314.53 Aligned_cols=220 Identities=24% Similarity=0.310 Sum_probs=192.4
Q ss_pred CccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024 61 DLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 61 ~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
++++.+|+||.||++++.+.++++++.|+.+. +....|+..+||.++++++...++|.|+++|||||+|||+|+|.+.
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~ 81 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGT 81 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcC
Confidence 35789999999999999999999999888753 3333555568999999999888899999999999999999999998
Q ss_pred CCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeee
Q psy16024 139 KLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLS 218 (316)
Q Consensus 139 ~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~g 218 (316)
+. ++||+||+||+|||||+||||.+ ++.+|++.+.+|+++.+|+++++ ...||+|.+|
T Consensus 82 ~~---~~LgilP~GT~NdfAr~Lgip~~------~~~~Al~~i~~g~~~~vDlg~~~-------------~~~~fin~a~ 139 (301)
T COG1597 82 DD---PPLGILPGGTANDFARALGIPLD------DIEAALELIKSGETRKVDLGQVN-------------GRRYFINNAG 139 (301)
T ss_pred CC---CceEEecCCchHHHHHHcCCCch------hHHHHHHHHHcCCeEEEeehhcC-------------CcceEEEEee
Confidence 42 23999999999999999999871 39999999999999999999775 2339999999
Q ss_pred eeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCC
Q psy16024 219 IGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASG 298 (316)
Q Consensus 219 iG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg 298 (316)
+|++|+++.+++..++ +.+|.++|++.+++.+...+ ++++++++|++..+. ....+++.|++++||+
T Consensus 140 ~G~~a~~~~~~~~~~k--------~~~g~~~y~~~~~~~l~~~~----~~~~~i~~d~~~~~~-~~~~~~~~~~~~~gg~ 206 (301)
T COG1597 140 IGFDAEVVAAVEEERK--------KGFGRLAYALAGLAVLARLK----PFRIEIEYDGKTFEG-EALALLVFNGNSYGGG 206 (301)
T ss_pred cchhHHHHHhhcHHHH--------hccchHHHHHHHHHhccccC----CCcEEEEEcCcEEEE-EEEEEEEecCcccccc
Confidence 9999999999888774 35799999999998887765 789999999999887 4677888999999999
Q ss_pred CCCCCCCCCCCCCcccc
Q psy16024 299 VDLWKLGRGQKSPFTLT 315 (316)
Q Consensus 299 ~~~~p~a~~~DG~ldv~ 315 (316)
+.++|.++++||+||++
T Consensus 207 ~~~~p~a~~~dG~l~~~ 223 (301)
T COG1597 207 MKLAPDASLDDGLLDVY 223 (301)
T ss_pred cccCCcCCCCCceEEEE
Confidence 99999999999999985
No 12
>KOG0782|consensus
Probab=100.00 E-value=1.4e-42 Score=318.53 Aligned_cols=252 Identities=36% Similarity=0.560 Sum_probs=219.2
Q ss_pred CCCccccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024 59 GVDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 59 g~~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
+-..+++|||||+||++++.+.+..+..+|++.+||++.+.+|..+.++.+.... -+|++|||||||.|+++-|...
T Consensus 363 plmkPLLVFVNPKSGGNqGsK~lq~f~WyLNPRQVFDlsq~GPK~aLEmyRKV~n---LRILaCGGDGTVGWiLStLD~L 439 (1004)
T KOG0782|consen 363 PLMKPLLVFVNPKSGGNQGSKALQTFCWYLNPRQVFDLSQLGPKFALEMYRKVVN---LRILACGGDGTVGWILSTLDNL 439 (1004)
T ss_pred CCCCceEEEecCCCCCcchHHHHHHHHHhcChhhheehhccCcHHHHHHHHhccc---eEEEEecCCCceeehhhhhhhc
Confidence 3456899999999999999999999999999999999999999999999999875 7999999999999999999998
Q ss_pred CCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhc--cc-----cee
Q psy16024 139 KLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTR--AL-----KCR 211 (316)
Q Consensus 139 ~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~--~~-----~~~ 211 (316)
...+.||+||+|+|||||+||.|+|+.+|. +....+++.++..|.+..+|.|.+.+.++...+..+ ++ .-.
T Consensus 440 ~l~p~PPvailPLGTGNDLARtlnWGGgyt--DEPvSkil~~ve~gtvVqLDRW~lhvEpNp~~~pEe~ddG~~~~LPL~ 517 (1004)
T KOG0782|consen 440 NLPPYPPVAILPLGTGNDLARTLNWGGGYT--DEPVSKILQAVEHGTVVQLDRWRLHVEPNPSCNPEEEDDGMQSALPLT 517 (1004)
T ss_pred CCCCCCCeeEeecCCcchHHHhcccCCCcC--cchHHHHHHHHhcCcEEeeeeeeecccCCCCCChhhhcccchhccchh
Confidence 777889999999999999999999999886 335678999999999999999999877654322111 00 124
Q ss_pred EEEeeeeeeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCC----CceeE
Q psy16024 212 WMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLP----PIESV 287 (316)
Q Consensus 212 ~f~n~~giG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~----~~~~~ 287 (316)
+|.||||+||||.|..+||..|+..|.+|++|+.+++.|.-.++..++....+++-..+++.+||..+.-+ ...-+
T Consensus 518 VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDfl~rSskDL~khi~vvCDG~DlTPkIqeLK~qCi 597 (1004)
T KOG0782|consen 518 VFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDFLKRSSKDLCKHITVVCDGVDLTPKIQELKLQCI 597 (1004)
T ss_pred HhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHHHhhhhHHhhhheEEEecCccCChhhhhcccceE
Confidence 79999999999999999999999999999999999999999999999988778888899999999764311 45668
Q ss_pred EEEccccccCCCCCCCCC---------CCCCCCcccc
Q psy16024 288 VVLNIPSWASGVDLWKLG---------RGQKSPFTLT 315 (316)
Q Consensus 288 ~v~N~~~~ggg~~~~p~a---------~~~DG~ldv~ 315 (316)
++.|+|+|.+|..+|... +-+||.++|+
T Consensus 598 vFlNIprYcaGTmPWG~pgdhhDfePqrhdDGyvEVi 634 (1004)
T KOG0782|consen 598 VFLNIPRYCAGTMPWGEPGDHHDFEPQRHDDGYVEVI 634 (1004)
T ss_pred EEecchhhhcCccCCCCCCccccCCccccCCceEEEE
Confidence 899999999999999865 4679998875
No 13
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=5.7e-42 Score=310.50 Aligned_cols=218 Identities=20% Similarity=0.217 Sum_probs=184.6
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
.++++|+||.||++++.+.++++++.|...+ +....|+.++++.++++++.+.++|.||++|||||+++|+|++...
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~- 80 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQL- 80 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcC-
Confidence 3688999999999888888888888887643 3333566666766777665555689999999999999999999864
Q ss_pred CCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeE-EEeeee
Q psy16024 140 LDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRW-MYNYLS 218 (316)
Q Consensus 140 ~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~-f~n~~g 218 (316)
...++||+||.||+||||++||++. ++.++++.+.+++.+++|++.++ .++ |+|++|
T Consensus 81 -~~~~~lgiiP~Gt~N~~a~~l~i~~-------~~~~~~~~l~~~~~~~~Dlg~v~--------------~~~~fln~~g 138 (293)
T TIGR00147 81 -DDIPALGILPLGTANDFARSLGIPE-------DLDKAAKLVIAGDARAIDMGQVN--------------KQYCFINMAG 138 (293)
T ss_pred -CCCCcEEEEcCcCHHHHHHHcCCCC-------CHHHHHHHHHcCCceEEEEEEEC--------------CeEEEEEEEe
Confidence 2347999999999999999999986 89999999999999999999986 478 999999
Q ss_pred eeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCC
Q psy16024 219 IGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASG 298 (316)
Q Consensus 219 iG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg 298 (316)
+|+||+++.+++... ++.+|+++|++++++.+.+++ ++++++++||+.++. +..+++|+|+++||||
T Consensus 139 ~G~~a~v~~~~~~~~--------k~~~g~~~Y~~~~l~~l~~~~----~~~~~i~~d~~~~~~-~~~~~~v~n~~~~gg~ 205 (293)
T TIGR00147 139 GGFGTEITTETPEKL--------KAALGSLSYILSGLMRMDTLQ----PFRCEIRGEGEHWQG-EAVVFLVGNGRQAGGG 205 (293)
T ss_pred echhhHhHhhCCHHH--------HhccchHHHHHHHHHHHhhCC----CeeEEEEECCeEEEe-eEEEEEEeCCcccCCC
Confidence 999999987765432 245799999999999998765 678999999998877 5677888999999999
Q ss_pred CCCCCCCCCCCCCcccc
Q psy16024 299 VDLWKLGRGQKSPFTLT 315 (316)
Q Consensus 299 ~~~~p~a~~~DG~ldv~ 315 (316)
+.++|.++++||.|||+
T Consensus 206 ~~~~p~a~~~DG~l~v~ 222 (293)
T TIGR00147 206 QKLAPDASINDGLLDLR 222 (293)
T ss_pred cccCCccccCCCeeEEE
Confidence 99999999999999986
No 14
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=316.38 Aligned_cols=216 Identities=23% Similarity=0.276 Sum_probs=181.3
Q ss_pred CccccccccCCCCCCCCcchHHHHHhhcCCc-eEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 61 DLWKLGRGNRKSGNGDGSHILSTFRRLLNPL-QVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 61 ~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~-~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
+.++++|+||+||++++.+.++++++.|.+. ++....|+..+++.++++++.++++|.||++|||||||||+|++.+.
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~l~~~- 320 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGTVTEVASELVNT- 320 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHhcC-
Confidence 4689999999999999888899999888764 33334677788999999988776789999999999999999999865
Q ss_pred CCCCCcEEEecCCCcchhhhhh-CCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeee
Q psy16024 140 LDPAPSVGIIPLGTGNDLSRVL-GWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLS 218 (316)
Q Consensus 140 ~~~~~~lgiiP~GTgNd~Ar~l-g~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~g 218 (316)
+++||+||+||||||||+| |++... .+++++++.+.+|.++++|++.++ +++|+|++|
T Consensus 321 ---~~~lgiiP~GTgNdfAr~L~gi~~~~----~~~~~a~~~i~~g~~~~iD~g~vn--------------~~~fln~ag 379 (547)
T PRK12361 321 ---DITLGIIPLGTANALSHALFGLGSKL----IPVEQACDNIIQGHTQRIDTARCN--------------DRLMLLLVG 379 (547)
T ss_pred ---CCCEEEecCCchhHHHHHhcCCCCCC----ccHHHHHHHHHhCCCeEEEEEEEc--------------CeEEEEEEe
Confidence 5899999999999999999 887421 278999999999999999999986 479999999
Q ss_pred eeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccc---
Q psy16024 219 IGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSW--- 295 (316)
Q Consensus 219 iG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~--- 295 (316)
+|+||+++.+.++.+ ++.+|+++|+..+++.+++.+ ++++++++||++....+..+++|+|+++|
T Consensus 380 iG~da~v~~~~~~~~--------k~~~G~laY~~~~~~~l~~~~----~~~l~i~~dg~~~~~~~~~~l~v~N~~~~~~~ 447 (547)
T PRK12361 380 IGFEQKMIESADRER--------KNALGQLAYLDGLWRAVNENE----TLTLTVTLDDAEPQTISTHSLVVANAAPFTSL 447 (547)
T ss_pred echhHHHHHhccHHH--------HhccCHHHHHHHHHHHhhcCC----CeeEEEEECCCCceEEEEEEEEEEcCCCcccc
Confidence 999999998776654 245799999999999998865 68899999997544335777889999654
Q ss_pred ---cCCCCCCCCCCCCCCCcccc
Q psy16024 296 ---ASGVDLWKLGRGQKSPFTLT 315 (316)
Q Consensus 296 ---ggg~~~~p~a~~~DG~ldv~ 315 (316)
|||. ++++||+|||+
T Consensus 448 ~~~Ggg~-----~~~~DG~Ldv~ 465 (547)
T PRK12361 448 LAQGGGE-----PNMTDGLLDIT 465 (547)
T ss_pred cccCCCC-----CCCCCceeEEE
Confidence 5553 58999999986
No 15
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=2e-37 Score=294.82 Aligned_cols=200 Identities=18% Similarity=0.143 Sum_probs=160.7
Q ss_pred CCCccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCC---CCCceEEEEEcCcchHHHHHH
Q psy16024 59 GVDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMP---SSGQTLILAAGGDGTAAWILN 133 (316)
Q Consensus 59 g~~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~---~~~~~~iv~~GGDGTl~~v~n 133 (316)
...++++||+||.||++++.+.|+++.++|..+. +..+.|+.++||.++++++. ..++|.||++|||||+|||+|
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVlN 236 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILN 236 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHHH
Confidence 4457899999999999999999999999997654 33457888999999987653 456899999999999999999
Q ss_pred HHHcCCC----------------------------------------------------------------------CCC
Q psy16024 134 TIHNMKL----------------------------------------------------------------------DPA 143 (316)
Q Consensus 134 ~l~~~~~----------------------------------------------------------------------~~~ 143 (316)
||..... ..+
T Consensus 237 GL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (601)
T PLN02204 237 GYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNER 316 (601)
T ss_pred HHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 9973210 135
Q ss_pred CcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeeeeeee
Q psy16024 144 PSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDA 223 (316)
Q Consensus 144 ~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~giG~dA 223 (316)
++|||||+||+||||+.+..+. ++..++..|+.|+.+++|+++|+........ ......+||+|++|+||+|
T Consensus 317 ~~lGIIPaGSgN~~a~~~~g~~-------dp~taa~~Ii~G~~~~lDig~V~~~~~~~~~-~~~~~~ryf~s~ag~Gf~g 388 (601)
T PLN02204 317 FRFGIIPAGSTDAIVMCTTGER-------DPVTSALHIILGRRVCLDIAQVVRWKTTSTS-EIEPYVRYAASFAGYGFYG 388 (601)
T ss_pred ceEEEECCccHHHHHHHccCCC-------CHHHHHHHHHhCCCeEeeEEEEecccccccc-cccccceEEEEEeecchHH
Confidence 7899999999999999987654 8999999999999999999999632110000 0001348999999999999
Q ss_pred eeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeec
Q psy16024 224 QVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVD 280 (316)
Q Consensus 224 ~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~ 280 (316)
+|+.+.++. |++|+++|.+++++.+++++ .++++|.+|+++.+
T Consensus 389 dVi~esek~----------R~mG~~rY~~~g~k~~~~~r----~y~~~V~~d~~~~~ 431 (601)
T PLN02204 389 DVISESEKY----------RWMGPKRYDYAGTKVFLKHR----SYEAEVAYLETESE 431 (601)
T ss_pred HHHHHhhhh----------cccchHHHHHHHHHHHHhCC----CceEEEEECCeEee
Confidence 999875443 46899999999999999876 68899999987644
No 16
>KOG1116|consensus
Probab=100.00 E-value=2.8e-32 Score=254.91 Aligned_cols=186 Identities=18% Similarity=0.174 Sum_probs=156.1
Q ss_pred CCCCCCCCccccccccCCCCCCCCcchHHH-HHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHH
Q psy16024 54 PSWASGVDLWKLGRGNRKSGNGDGSHILST-FRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAW 130 (316)
Q Consensus 54 ~s~~~g~~~~~~vivNp~sG~~~~~~~~~~-~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~ 130 (316)
+.-..+++++++||+||++|+|++.++|.. ++++|...+ +..+.|+++.||+++++.+.-.+||.|+++||||++||
T Consensus 172 ~~~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~hE 251 (579)
T KOG1116|consen 172 SVDSLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLLHE 251 (579)
T ss_pred cccccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCHHH
Confidence 444456778999999999999999887765 667777654 34457999999999999997778999999999999999
Q ss_pred HHHHHHcCCC---CCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcc
Q psy16024 131 ILNTIHNMKL---DPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRA 207 (316)
Q Consensus 131 v~n~l~~~~~---~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~ 207 (316)
|+|||+.++. ....|||+||+||||+||++++|..++. -+..+...+++|...++|+..+.....
T Consensus 252 VlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~----~~~~a~l~iirg~~t~~dv~~v~~~~~-------- 319 (579)
T KOG1116|consen 252 VLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPD----LPLLATLLIIRGRLTPMDVSVVEYAGK-------- 319 (579)
T ss_pred hhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCcc----cchHHHHHHHccCCCchheeehhhccC--------
Confidence 9999999852 2468999999999999999999976321 267788889999999999999875542
Q ss_pred cceeEEEeeeeeeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhcc
Q psy16024 208 LKCRWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERG 262 (316)
Q Consensus 208 ~~~~~f~n~~giG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~ 262 (316)
...|++++++|||.|++..+.|++| ++|..+|.+.++..++..+
T Consensus 320 -~~~fSfLs~~wGlIADiDI~SEk~R----------~mG~~Rf~lg~~~rl~~lr 363 (579)
T KOG1116|consen 320 -DRHFSFLSAAWGLIADVDIESEKYR----------WMGPARFTLGAFLRLIQLR 363 (579)
T ss_pred -cceEEEEeeeeeeEEecccchHHHH----------hhcchhhhHHHHHHHHhcc
Confidence 2378889999999999999988876 5899999999988887654
No 17
>KOG1170|consensus
Probab=99.98 E-value=1.3e-33 Score=267.95 Aligned_cols=259 Identities=37% Similarity=0.633 Sum_probs=220.6
Q ss_pred CCCCCCCCccccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHH
Q psy16024 54 PSWASGVDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133 (316)
Q Consensus 54 ~s~~~g~~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n 133 (316)
..|++.+..+++|++|.+||..++.++.++++.+|...+|+++...+|.-+..+...... .+|++|||||++.||+.
T Consensus 187 ~a~~~~~~spllv~insksgd~qg~~~lrkfkq~lnp~qVfdll~~gp~~gL~~f~~~d~---friLvcggdGsv~wvls 263 (1099)
T KOG1170|consen 187 EAYGGPCGSPLLVFINSKSGDSQGQRFLRKFKQILNPIQVFDLIAGGPDFGLTFFSHFES---FRILVCGGDGSVGWVLS 263 (1099)
T ss_pred hhcCCCCCCceeEeecccCCCchhHHHHHhhhhhcCHHHHHHHHccCcchhhhhhhcccc---eEEEEecCCCCCcchHH
Confidence 456777778999999999999999999999999999999999888888888888777764 79999999999999999
Q ss_pred HHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeech-------------
Q psy16024 134 TIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIR------------- 200 (316)
Q Consensus 134 ~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~------------- 200 (316)
.+.......++.++++|+|||||+||.+||+..+++.. .+..+++.+.++.++.+|.|.|-.....
T Consensus 264 ~~ds~~lh~kcql~vlplgtgndlarvlgwg~a~~ddt-~~p~il~~~eRastkmldrwsvm~~e~~~~~~~~~~~~~v~ 342 (1099)
T KOG1170|consen 264 AIDRLNLHSKCQLAVLPLGTGNDLARVLGWGHAFYDDT-LLPQILRTMERASTKMLDRWSVMAIEGPQADAVRRYIEKVE 342 (1099)
T ss_pred HHHhccchhhcccccccCCChHHHHHHhcccccCchhh-ccHHHHHHHHhhhhhhhhcchhhhhhccccchHHHHHHHHH
Confidence 99888777789999999999999999999996555222 3348888888899999999986321000
Q ss_pred --------------------------------------------------------------------------------
Q psy16024 201 -------------------------------------------------------------------------------- 200 (316)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (316)
T Consensus 343 ~~~~~~e~~~i~~~e~q~~t~l~kiL~s~~~t~~i~~~~~~c~~~~~f~~k~~ka~~s~~~nl~~s~a~~~k~spa~e~~ 422 (1099)
T KOG1170|consen 343 TFLEAEETWDIIHAENQLATTLRKILHSVSHTYSILENNTLCTKREDFVKKRSKATPSVLSNLSSSSACSPKCSPAGEDL 422 (1099)
T ss_pred HhcccchhhhhhhhhhhhhhhHHhhhccccchhhhhhhccccchHHHHHHHHhhcccchhccCCchhhccccCCccccch
Confidence
Q ss_pred --------------------------h-----------------------------------h-----------------
Q psy16024 201 --------------------------Q-----------------------------------L----------------- 202 (316)
Q Consensus 201 --------------------------~-----------------------------------~----------------- 202 (316)
+ +
T Consensus 423 ~~~~~~~~~es~assv~~~~t~~~~~~l~~gt~~~~~~g~t~~p~~~~~~~~~~~i~~~r~eL~~kans~kks~s~~i~~ 502 (1099)
T KOG1170|consen 423 PQLFEILHSESSASSVLTALSARTYDELEIGTVHPPTPGATREPSTAYDDDEENEIVENRKELDQKANSLKKSVSTIIDI 502 (1099)
T ss_pred hHHHHHhhhhhhhhhccCCCchhhhhhhhhccccCCCCCccCCCCccccchhhhhhcccHHHHhHHhhhhhccHHHhHHH
Confidence 0 0
Q ss_pred -----h---------h-----------------------------------h----------------------------
Q psy16024 203 -----R---------L-----------------------------------T---------------------------- 205 (316)
Q Consensus 203 -----~---------~-----------------------------------~---------------------------- 205 (316)
+ + +
T Consensus 503 te~a~De~~~~~~~~L~eseekm~~ks~~~~~~se~d~~~~~~s~~~~~~spl~rl~s~~~ls~ggs~~s~~~~~d~dtl 582 (1099)
T KOG1170|consen 503 TEGAPDEPRIYSDTTLNESEEKMKSKSLHPICSSEDDMKQHSDSSLYADYSPLERLSSGGGLSAGGSTLSPARASDSDTL 582 (1099)
T ss_pred hhcCCCcccccchhhhhhhHhhhhhccCCCcccCccccccccchhhccccchhhccCCCCCcccCccccCcccccccchh
Confidence 0 0 0
Q ss_pred --------cc--------c---------ceeEEEeeeeeeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhh
Q psy16024 206 --------RA--------L---------KCRWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAME 260 (316)
Q Consensus 206 --------~~--------~---------~~~~f~n~~giG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~ 260 (316)
.+ . +..+|.||||||+||.|..+||..|+++|+++.+|..+.++|.+.|.++|++
T Consensus 583 ~al~~~~~~p~~d~g~seS~L~sa~~y~EkCVMNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKeLLh 662 (1099)
T KOG1170|consen 583 SALKERKRTPGSDLGLSESHLRSAGQYKEKCVMNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKELLH 662 (1099)
T ss_pred hhhhccccCCcccccccccccccccchhhhhhhccccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHHHHH
Confidence 00 0 1246999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccEEEEECCeeecCCCceeEEEEccccccCCCCCCCCC---------CCCCCCccccC
Q psy16024 261 RGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWKLG---------RGQKSPFTLTS 316 (316)
Q Consensus 261 ~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg~~~~p~a---------~~~DG~ldv~~ 316 (316)
..|+++.++|.+++||+++.+|.+..|+|.|+|+|.||.++|... +.||+.|+|||
T Consensus 663 rTyrnLEQRV~LECDG~~i~lP~LQGIviLNIpSyaGGtNFWGsnk~dd~f~apSfDDriLEVVA 727 (1099)
T KOG1170|consen 663 RTYRNLEQRVKLECDGVPIDLPSLQGIVILNIPSYAGGTNFWGSNKDDDEFTAPSFDDRILEVVA 727 (1099)
T ss_pred HHHHhHHHHeeeecCCcccCCcccceeEEEecccccCcccccCCCCCCCcccCCCcccceeEEee
Confidence 999999999999999999999999999999999999999999854 46789999986
No 18
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.93 E-value=3.6e-26 Score=182.34 Aligned_cols=124 Identities=27% Similarity=0.345 Sum_probs=89.6
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc--eEEEcccCChHHHHHHHHhCCCCCc-eEEEEEcCcchHHHHHHHHHcCC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL--QVVDLADKSPEEALQWVSLMPSSGQ-TLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v~~~~t~~~~~~~~~~~~~~~~~~-~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
+++||+||+||++++. ++++++.|... .+....|+..+++.++++......+ +.|+++|||||+|+++|++....
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~ 78 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGSD 78 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTST
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhcC
Confidence 4789999999999887 46666666543 2222245556677776652222224 89999999999999999999886
Q ss_pred CCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHH-HHHHHHccCCcceeeEEEE
Q psy16024 140 LDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQ-ILDNLTRSKVAHLDRWSVQ 195 (316)
Q Consensus 140 ~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~-~l~~l~~~~~~~~D~~~v~ 195 (316)
....+|||+||+||+|||||+||++. ++.. ++..+..+..+++|+++++
T Consensus 79 ~~~~~~l~iiP~GT~N~~ar~lg~~~-------~~~~~a~~~~~~~~~~~~d~~~v~ 128 (130)
T PF00781_consen 79 REDKPPLGIIPAGTGNDFARSLGIPS-------DPEANAALLIILGRVRKIDVGKVN 128 (130)
T ss_dssp SSS--EEEEEE-SSS-HHHHHTT--S-------SHHH-HHHHHHHSEEEEEEEEEET
T ss_pred CCccceEEEecCCChhHHHHHcCCCC-------CcHHHHHHHHHhCCCcEeEEEEeC
Confidence 44468999999999999999999987 7777 6666677777799998874
No 19
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.92 E-value=8.5e-25 Score=172.69 Aligned_cols=100 Identities=49% Similarity=0.842 Sum_probs=82.7
Q ss_pred cccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCC-CC
Q psy16024 65 LGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLD-PA 143 (316)
Q Consensus 65 ~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~-~~ 143 (316)
+||+||+||++++.+++.++++.+..+.++...+....++.++++++.. +|.|+++|||||+|+|+|++.+.... +.
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~~~~~~~~~~~~~~~~~--~d~vvv~GGDGTi~~vvn~l~~~~~~~~~ 78 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLTKKGPAAALVIFRDLPK--FDRVLVCGGDGTVGWVLNALDKRELPLPE 78 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEecCChHHHHHHHhhcCc--CCEEEEEccccHHHHHHHHHHhcccccCC
Confidence 5899999999999888999999998877765444556667777776643 78999999999999999999876422 12
Q ss_pred CcEEEecCCCcchhhhhhCCCCC
Q psy16024 144 PSVGIIPLGTGNDLSRVLGWGKL 166 (316)
Q Consensus 144 ~~lgiiP~GTgNd~Ar~lg~~~~ 166 (316)
+|||+||+||+|||||+||++..
T Consensus 79 ~plgiiP~GTgNdfar~lgi~~~ 101 (124)
T smart00046 79 PPVAVLPLGTGNDLARSLGWGGG 101 (124)
T ss_pred CcEEEeCCCChhHHHHHcCCCCC
Confidence 89999999999999999999873
No 20
>KOG1115|consensus
Probab=99.90 E-value=1.5e-23 Score=187.19 Aligned_cols=225 Identities=18% Similarity=0.142 Sum_probs=172.5
Q ss_pred CccccccccCCCCCCCCcchHHHHHhhcCCceE--EEcccCChHHHHHHHHhCCC---CCceEEEEEcCcchHHHHHHHH
Q psy16024 61 DLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQV--VDLADKSPEEALQWVSLMPS---SGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 61 ~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v--~~~~t~~~~~~~~~~~~~~~---~~~~~iv~~GGDGTl~~v~n~l 135 (316)
+..++||+||.+|+|+++++|+.+.+++-...+ ..+.|+.+.||.+...+++. ..+|.||++||||..||++||+
T Consensus 158 PknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d~~~ei~~~~~~~yDGiv~VGGDG~FnEiL~G~ 237 (516)
T KOG1115|consen 158 PKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFDVMAEIQNKELHTYDGIVAVGGDGFFNEILNGY 237 (516)
T ss_pred CccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhhhhhhCCHhhhhhcccEEEecCchhHHHHHhhh
Confidence 457999999999999999999998776654332 34478999999999988874 3589999999999999999998
Q ss_pred HcCC-------C--------CCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeech
Q psy16024 136 HNMK-------L--------DPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIR 200 (316)
Q Consensus 136 ~~~~-------~--------~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~ 200 (316)
..+- + ...+.+||||+|+.|...-+..-. .|++..+-.|+-|....+|++.|.....
T Consensus 238 llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~gt-------~D~~TSAlHI~lG~~l~vDVctVht~~k- 309 (516)
T KOG1115|consen 238 LLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTGT-------RDPVTSALHIILGRKLFVDVCTVHTIEK- 309 (516)
T ss_pred hhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEeccC-------CccccceeeeEeccceeeeeeeeeecch-
Confidence 6542 1 135789999999999998776532 3666666677889999999999863321
Q ss_pred hhhhhcccceeEEEeeeeeeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEE------
Q psy16024 201 QLRLTRALKCRWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYL------ 274 (316)
Q Consensus 201 ~~~~~~~~~~~~f~n~~giG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~------ 274 (316)
--||..|.+|.||.++|..+.|++| |+|..+|-++++|+++++++ +.-++..
T Consensus 310 --------LiRysaSa~gYGFyGDvl~dSEKYR----------WmGp~RYDfsglKtflkH~~----YegeVsFlpa~se 367 (516)
T KOG1115|consen 310 --------LIRYSASAAGYGFYGDVLSDSEKYR----------WMGPKRYDFSGLKTFLKHRS----YEGEVSFLPAESE 367 (516)
T ss_pred --------heeeehhhhcccccchhhhhhhhhh----------ccCchhhhhHHHHHHHhccc----cceEEEecccccC
Confidence 3589999999999999999988875 79999999999999998874 3333321
Q ss_pred ---------------CCeeecC--CCceeEEEEccccccCC--CCCCCCCCCCCCCcccc
Q psy16024 275 ---------------DGERVDL--PPIESVVVLNIPSWASG--VDLWKLGRGQKSPFTLT 315 (316)
Q Consensus 275 ---------------dg~~~~~--~~~~~~~v~N~~~~ggg--~~~~p~a~~~DG~ldv~ 315 (316)
+.++++. ....-+.++++|+.-.- ..++|.+.++||.+|+.
T Consensus 368 n~~qe~~~~g~~~~~~~k~Wq~~~g~Fl~V~c~aipciC~~~PrGLaP~T~LndGs~dLi 427 (516)
T KOG1115|consen 368 NPCQEPCPSGASLHTRSKTWQRNTGRFLKVLCRAIPCICNSKPRGLAPSTTLNDGSEDLI 427 (516)
T ss_pred CchhccccccCCcccCcchhhhhhhheeeeeEeeccccccCCCCCcCCccccCCCcccee
Confidence 1122111 13455777888875433 34789999999999874
No 21
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.81 E-value=5.6e-21 Score=157.63 Aligned_cols=105 Identities=47% Similarity=0.807 Sum_probs=96.4
Q ss_pred EEEeeeeeeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCC-CceeEEEE
Q psy16024 212 WMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLP-PIESVVVL 290 (316)
Q Consensus 212 ~f~n~~giG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~-~~~~~~v~ 290 (316)
.|.||||||+||+|+.+||+.|+++|.+|.+|+.|++.|...++++++...+..+...+++.+||+++.+| +...+++.
T Consensus 1 v~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~l~~dg~~~~lp~~~~~iv~l 80 (161)
T PF00609_consen 1 VMNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNLPKKIELEVDGKEVDLPSSLESIVFL 80 (161)
T ss_pred CeEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCchhhcccccCCeeEeeecceeEEEEE
Confidence 48999999999999999999999999999999999999999999999976677777889999999999998 88999999
Q ss_pred ccccccCCCCCCCC------------CCCCCCCccccC
Q psy16024 291 NIPSWASGVDLWKL------------GRGQKSPFTLTS 316 (316)
Q Consensus 291 N~~~~ggg~~~~p~------------a~~~DG~ldv~~ 316 (316)
|+|+|+||.++|+. .+.+||+|+|+.
T Consensus 81 NIpSy~gG~~~W~~~~~~~~~~~~~~~~~~Dg~lEVvg 118 (161)
T PF00609_consen 81 NIPSYGGGVDLWGNSKPDRSKLKFKKQSMDDGKLEVVG 118 (161)
T ss_pred ccccccCCcccccCCcccccccccccccccCceEEEEE
Confidence 99999999999986 445899999873
No 22
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.76 E-value=1.9e-19 Score=148.51 Aligned_cols=105 Identities=46% Similarity=0.776 Sum_probs=90.1
Q ss_pred EEEeeeeeeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCC-CceeEEEE
Q psy16024 212 WMYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLP-PIESVVVL 290 (316)
Q Consensus 212 ~f~n~~giG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~-~~~~~~v~ 290 (316)
+|+|++|+||||+|++.+++.|++++.++.++..|+++|.+.++++++..+++..++++++++||++.+.+ .+.+++++
T Consensus 1 ~~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~v~v~ 80 (160)
T smart00045 1 VMNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIELECDGVDVDLPNSLEGIAVL 80 (160)
T ss_pred CccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhccccchhhceEEEECCEeccCCCCccEEEEE
Confidence 48999999999999999988887777666677789999999999999764433224578999999988776 57889999
Q ss_pred ccccccCCCCCC----------CCCCCCCCCccccC
Q psy16024 291 NIPSWASGVDLW----------KLGRGQKSPFTLTS 316 (316)
Q Consensus 291 N~~~~ggg~~~~----------p~a~~~DG~ldv~~ 316 (316)
|++|||||+.+| |+|+++||+|||+.
T Consensus 81 N~~~~ggG~~i~p~~~~~~~~~p~a~~~DG~ldv~~ 116 (160)
T smart00045 81 NIPSYGGGTNLWGTTDKEDLNFSKQSHDDGLLEVVG 116 (160)
T ss_pred CCCccccCcccccCCcccccccCCCCCCCceEEEEE
Confidence 999999999999 88999999999963
No 23
>KOG1170|consensus
Probab=99.57 E-value=9.1e-16 Score=147.21 Aligned_cols=120 Identities=29% Similarity=0.527 Sum_probs=86.4
Q ss_pred ccccccceEEEEechHHHHHhhccChhhceeeecCCeeecCCCceeeeecCCCCCCCCCCccccccccCCCCCCCCcchH
Q psy16024 2 SIAFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWKLGRGNRKSGNGDGSHIL 81 (316)
Q Consensus 2 ~~r~~nk~~y~~~~~~~~~~~~~~~l~~~i~l~~d~~~~~lp~l~~i~~~ni~s~~~g~~~~~~vivNp~sG~~~~~~~~ 81 (316)
+||.||+|||..+|++|.++++|++|+++|.|||||+++.||.|++|+++|||||.+|+|+| |+.+....+
T Consensus 643 rSR~kn~MWYGvLGtKeLLhrTyrnLEQRV~LECDG~~i~lP~LQGIviLNIpSyaGGtNFW---------Gsnk~dd~f 713 (1099)
T KOG1170|consen 643 RSRSKNFMWYGVLGTKELLHRTYRNLEQRVKLECDGVPIDLPSLQGIVILNIPSYAGGTNFW---------GSNKDDDEF 713 (1099)
T ss_pred hHHhhhcchhhhcchHHHHHHHHHhHHHHeeeecCCcccCCcccceeEEEecccccCccccc---------CCCCCCCcc
Confidence 69999999999999999999999999999999999999999999999999999999999999 444432221
Q ss_pred --HHH-HhhcCCceEEEccc--CChHHHHHHHHhCCCCCceEEEEEcCcchHHHH
Q psy16024 82 --STF-RRLLNPLQVVDLAD--KSPEEALQWVSLMPSSGQTLILAAGGDGTAAWI 131 (316)
Q Consensus 82 --~~~-~~~l~~~~v~~~~t--~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v 131 (316)
..+ .++|+-..||-... .+.-.-.+..|-++++ ...|++.|-.|---.|
T Consensus 714 ~apSfDDriLEVVAvFGsvqMA~SRvI~LqhHRIAQCr-~V~I~IlGDE~IPVQv 767 (1099)
T KOG1170|consen 714 TAPSFDDRILEVVAVFGSVQMATSRVIRLQHHRIAQCR-HVRIVILGDEGIPVQV 767 (1099)
T ss_pred cCCCcccceeEEeeeehhHHHHHHHHHHhhhhhhhhce-EEEEEEecCCCCceee
Confidence 112 23444333332111 1111112333445554 6778999988875555
No 24
>KOG4435|consensus
Probab=99.43 E-value=4.5e-13 Score=120.33 Aligned_cols=155 Identities=16% Similarity=0.107 Sum_probs=107.7
Q ss_pred CccccccccCCCCCCCCcchHHH-HHhhcC--CceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHc
Q psy16024 61 DLWKLGRGNRKSGNGDGSHILST-FRRLLN--PLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHN 137 (316)
Q Consensus 61 ~~~~~vivNp~sG~~~~~~~~~~-~~~~l~--~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~ 137 (316)
..+++|++||.+.++.....+.+ ..++|. .++|..+.|...++|+.++..+... .|.|+|+|||||+.||+.|++.
T Consensus 60 ~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t~-~Dii~VaGGDGT~~eVVTGi~R 138 (535)
T KOG4435|consen 60 PKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDTQ-EDIIYVAGGDGTIGEVVTGIFR 138 (535)
T ss_pred cceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhccC-CCeEEEecCCCcHHHhhHHHHh
Confidence 35899999999987655443332 344444 4566667899999999999888765 5999999999999999999998
Q ss_pred CCCCCCCcEEEecCCCcchhhhhhCCCCCCC-CCCCCHHHHHHHHHccCC---cceeeEEEEEeechhhhhhcccceeEE
Q psy16024 138 MKLDPAPSVGIIPLGTGNDLSRVLGWGKLYD-RDTCSPFQILDNLTRSKV---AHLDRWSVQIKSIRQLRLTRALKCRWM 213 (316)
Q Consensus 138 ~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~-~~~~~~~~~l~~l~~~~~---~~~D~~~v~~~~~~~~~~~~~~~~~~f 213 (316)
+. ....|++++|.|--|-...+.-...-.+ ..-...-+++.++++++. .++|+.. .++ .....|-
T Consensus 139 rr-~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~~----~gs------~l~P~fg 207 (535)
T KOG4435|consen 139 RR-KAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVTT----EGS------TLAPEFG 207 (535)
T ss_pred cc-cccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccccceEEEEecc----CCC------ccccccc
Confidence 85 4578999999999987665543321111 001234577788888887 4555533 110 0123567
Q ss_pred Eeeeeeeeeeeeec
Q psy16024 214 YNYLSIGVDAQVAL 227 (316)
Q Consensus 214 ~n~~giG~dA~v~~ 227 (316)
++-+++|..-++..
T Consensus 208 l~glswG~frdi~~ 221 (535)
T KOG4435|consen 208 LGGLSWGWFRDIED 221 (535)
T ss_pred cCccchhhhhhhhh
Confidence 78899998776654
No 25
>KOG1169|consensus
Probab=99.30 E-value=1.7e-12 Score=124.27 Aligned_cols=63 Identities=46% Similarity=0.918 Sum_probs=58.0
Q ss_pred CccccccceEEEEechHHHHHhhccC--hhhceeeecCCeeecCC-CceeeeecCCCCCCCCCCcc
Q psy16024 1 MSIAFKLKFLYLTFGTQQAMERGCRD--LDQRIELYLDGERVDLP-PIESVVVLNIPSWASGVDLW 63 (316)
Q Consensus 1 ~~~r~~nk~~y~~~~~~~~~~~~~~~--l~~~i~l~~d~~~~~lp-~l~~i~~~ni~s~~~g~~~~ 63 (316)
||||++||+||+++|+++++...|++ ++.+|+++.|++.+.+| ++++|+++|||+|++|+|+|
T Consensus 460 F~Sr~~NKl~Yf~~G~q~~f~~~ck~~~~~i~i~~~~d~~dl~~p~sleGIv~LNIpS~ggG~nlW 525 (634)
T KOG1169|consen 460 FNSRMKNKLWYFEFGTQETFAARCKNLHLHIKIELDGDGEDLELPKSLEGIVVLNIPSWGGGSNLW 525 (634)
T ss_pred hcchhhceeeeeeecchhhHHHhhcCCccceEEEEcccceEccCCCCceeEEEEcccccccCcccc
Confidence 89999999999999999999999999 55567777788888889 89999999999999999999
No 26
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.22 E-value=1.9e-12 Score=106.73 Aligned_cols=63 Identities=46% Similarity=0.889 Sum_probs=61.5
Q ss_pred CccccccceEEEEechHHHHHhhccChhhceeeecCCeeecCC-CceeeeecCCCCCCCCCCcc
Q psy16024 1 MSIAFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLP-PIESVVVLNIPSWASGVDLW 63 (316)
Q Consensus 1 ~~~r~~nk~~y~~~~~~~~~~~~~~~l~~~i~l~~d~~~~~lp-~l~~i~~~ni~s~~~g~~~~ 63 (316)
||||++||+||+.+|+++.+.+.|+++.+++++++|++.+.+| .+++++++|||+|.+|.++|
T Consensus 29 f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~l~~dg~~~~lp~~~~~iv~lNIpSy~gG~~~W 92 (161)
T PF00609_consen 29 FNSRLLNKLWYAFFGFKALFQRSCKNLPKKIELEVDGKEVDLPSSLESIVFLNIPSYGGGVDLW 92 (161)
T ss_pred hccHHHHHHHHHHHHHHHHHhchhcCchhhcccccCCeeEeeecceeEEEEEccccccCCcccc
Confidence 8999999999999999999989999999999999999999999 89999999999999999999
No 27
>KOG0782|consensus
Probab=98.83 E-value=9.5e-10 Score=102.94 Aligned_cols=63 Identities=25% Similarity=0.522 Sum_probs=59.0
Q ss_pred CccccccceEEEEechHHHHHhhccChhhceeeecCCeee----cCCCceeeeecCCCCCCCCCCcc
Q psy16024 1 MSIAFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERV----DLPPIESVVVLNIPSWASGVDLW 63 (316)
Q Consensus 1 ~~~r~~nk~~y~~~~~~~~~~~~~~~l~~~i~l~~d~~~~----~lp~l~~i~~~ni~s~~~g~~~~ 63 (316)
|||||+|||+|...++.+++.+++++|-+.|.++|||..+ ..-.+++++++|||.|.+|+.+|
T Consensus 546 fNSRfrNkmfYaG~afsDfl~rSskDL~khi~vvCDG~DlTPkIqeLK~qCivFlNIprYcaGTmPW 612 (1004)
T KOG0782|consen 546 FNSRFRNKMFYAGLAFSDFLKRSSKDLCKHITVVCDGVDLTPKIQELKLQCIVFLNIPRYCAGTMPW 612 (1004)
T ss_pred HHHHHhhhhhhcchhHHHHHhhhhHHhhhheEEEecCccCChhhhhcccceEEEecchhhhcCccCC
Confidence 8999999999999999999999999999999999999965 34468999999999999999999
No 28
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.77 E-value=1.5e-08 Score=90.67 Aligned_cols=110 Identities=17% Similarity=0.069 Sum_probs=74.0
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEc--ccCChHHHHHHH-HhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDL--ADKSPEEALQWV-SLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~--~t~~~~~~~~~~-~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
|++.|++|+ ++..+.+.++++.+.|...+ +... .+....+..... ..+...++|.||++|||||+.++++ +.
T Consensus 1 m~v~iv~~~--~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~-~~ 77 (277)
T PRK03708 1 MRFGIVARR--DKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIEH-KT 77 (277)
T ss_pred CEEEEEecC--CCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHHH-hc
Confidence 457788887 34455667888888786553 2211 111111111111 1223235899999999999999999 66
Q ss_pred cCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 137 NMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 137 ~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
.. .+|+..||.||. +|...+. +. ++.++++.+.+|...
T Consensus 78 ~~----~~pi~gIn~G~l-GFl~~~~-~~-------~~~~~l~~i~~g~~~ 115 (277)
T PRK03708 78 KK----DIPILGINMGTL-GFLTEVE-PE-------ETFFALSRLLEGDYF 115 (277)
T ss_pred CC----CCeEEEEeCCCC-CccccCC-HH-------HHHHHHHHHHcCCce
Confidence 54 589999999998 8888876 32 778899999998754
No 29
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=98.53 E-value=3.3e-07 Score=82.18 Aligned_cols=74 Identities=26% Similarity=0.287 Sum_probs=56.8
Q ss_pred CChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHH
Q psy16024 99 KSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQIL 178 (316)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l 178 (316)
++.+|...+++++.+++.|.|+.+|||||..+|++++. .++|+--||.||-|-+.-..--|. +....+
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av~-----~~vPvLGipaGvk~~SgvfA~~P~-------~aa~l~ 151 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAVG-----ADVPVLGIPAGVKNYSGVFALSPE-------DAARLL 151 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhcc-----CCCceEeeccccceeccccccChH-------HHHHHH
Confidence 45677788889999888999999999999999999982 258999999999886643222222 445566
Q ss_pred HHHHcc
Q psy16024 179 DNLTRS 184 (316)
Q Consensus 179 ~~l~~~ 184 (316)
..++++
T Consensus 152 ~~~lkg 157 (355)
T COG3199 152 GAFLKG 157 (355)
T ss_pred HHHhcc
Confidence 677777
No 30
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.51 E-value=2.7e-07 Score=83.81 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=69.9
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
.++++|+|| |+..+.+.+.++.+.|++.+ +....+....+..........+.+|.|+++|||||+.++++.+...
T Consensus 4 kkv~lI~n~--~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~~~~~~~~~- 80 (305)
T PRK02645 4 KQVIIAYKA--GSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLAAARHLAPH- 80 (305)
T ss_pred CEEEEEEeC--CCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHHHHHHhccC-
Confidence 368999999 44455566777777776543 3322222211111111122223479999999999999999998654
Q ss_pred CCCCCcEEEecC-CCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 140 LDPAPSVGIIPL-GTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 140 ~~~~~~lgiiP~-GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
.+|+..|.+ |+-.=++..-... .+ .++++.+.+|+..
T Consensus 81 ---~~pv~gin~~G~lGFL~~~~~~~-------~~-~~~l~~i~~g~~~ 118 (305)
T PRK02645 81 ---DIPILSVNVGGHLGFLTHPRDLL-------QD-ESVWDRLQEDRYA 118 (305)
T ss_pred ---CCCEEEEecCCcceEecCchhhc-------ch-HHHHHHHHcCCce
Confidence 578998998 7744444221100 13 6899999998754
No 31
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.48 E-value=3.9e-07 Score=82.10 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=68.5
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHH-----H--HHhCCCCCceEEEEEcCcchHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQ-----W--VSLMPSSGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~-----~--~~~~~~~~~~~iv~~GGDGTl~~v~n~l 135 (316)
++.+|.|+.. ..+.+...++.+.|.+.++............. . ..+.. ++.|.|+++|||||+..+++.+
T Consensus 7 ~i~iv~~~~~--~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~lGGDGT~L~aa~~~ 83 (292)
T PRK03378 7 CIGIVGHPRH--PTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIG-QQADLAIVVGGDGNMLGAARVL 83 (292)
T ss_pred EEEEEEeCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcC-CCCCEEEEECCcHHHHHHHHHh
Confidence 5888888743 34555667777777655432111111111000 0 01222 2379999999999999999887
Q ss_pred HcCCCCCCCcEEEecCCCcc-hhhhhhCCCCCCCCCCCCHHHHHHHHHccCC
Q psy16024 136 HNMKLDPAPSVGIIPLGTGN-DLSRVLGWGKLYDRDTCSPFQILDNLTRSKV 186 (316)
Q Consensus 136 ~~~~~~~~~~lgiiP~GTgN-d~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~ 186 (316)
... .+.++|.++|| +|...+.. . ++.++++.+.+|..
T Consensus 84 ~~~------~~Pilgin~G~lGFl~~~~~-~-------~~~~~l~~i~~g~~ 121 (292)
T PRK03378 84 ARY------DIKVIGINRGNLGFLTDLDP-D-------NALQQLSDVLEGHY 121 (292)
T ss_pred cCC------CCeEEEEECCCCCcccccCH-H-------HHHHHHHHHHcCCc
Confidence 654 25578888899 88887762 2 67889999988875
No 32
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.77 E-value=6.6e-05 Score=67.89 Aligned_cols=109 Identities=17% Similarity=0.060 Sum_probs=65.3
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCC---hHHHHHHH--HhCCCCCceEEEEEcCcchHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKS---PEEALQWV--SLMPSSGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~---~~~~~~~~--~~~~~~~~~~iv~~GGDGTl~~v~n~l 135 (316)
++.||+|+.. ..+.+.++++.+.|.+.. ++...+.. +.++.... ..+. ++.|.|+++|||||+.++++.+
T Consensus 6 ~v~iv~~~~k--~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDGt~l~~~~~~ 82 (295)
T PRK01231 6 NIGLIGRLGS--SSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLG-EVCDLVIVVGGDGSLLGAARAL 82 (295)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcc-cCCCEEEEEeCcHHHHHHHHHh
Confidence 6888888755 345566777777776543 32211111 11111111 1122 2479999999999999999887
Q ss_pred HcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 136 HNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 136 ~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
... .+|+--|..|+-. |-..+.. .+..++++.+.+|...
T Consensus 83 ~~~----~~Pvlgin~G~lG-Fl~~~~~--------~~~~~~l~~~~~g~~~ 121 (295)
T PRK01231 83 ARH----NVPVLGINRGRLG-FLTDIRP--------DELEFKLAEVLDGHYQ 121 (295)
T ss_pred cCC----CCCEEEEeCCccc-ccccCCH--------HHHHHHHHHHHcCCce
Confidence 543 4677667777632 2222211 2667889999988743
No 33
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.57 E-value=5.3e-05 Score=68.38 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=47.3
Q ss_pred CCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcce
Q psy16024 114 SGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHL 189 (316)
Q Consensus 114 ~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~ 189 (316)
++.|.|+++|||||+-.++..+... .+|+--|+.||- .|--.+.. .+..++++.+.+++...-
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~~----~~Pilgin~G~l-gfl~~~~~--------~~~~~~l~~~~~g~~~~~ 137 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGDY----DIPILGINTGTL-GFLTEFEP--------EDIEEALEKILAGEYSIE 137 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTTS----T-EEEEEESSSS-TSSSSEEG--------CGHHHHHHHHHHTHCEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHhccC----CCcEEeecCCCc-cccccCCH--------HHHHHHHHHHhcCCeEEE
Confidence 4589999999999999999987653 589999999994 44333322 278889999988765543
No 34
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.42 E-value=0.0003 Score=63.57 Aligned_cols=109 Identities=12% Similarity=0.017 Sum_probs=63.7
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEE-cccCChH--HHHH---HH-HhCCCCCceEEEEEcCcchHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVD-LADKSPE--EALQ---WV-SLMPSSGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~-~~t~~~~--~~~~---~~-~~~~~~~~~~iv~~GGDGTl~~v~n~l 135 (316)
++.+|.|+.. ..+.+.++.+.+.|+.+++.. +...... ++.+ .. +++. +..|.||++|||||+..+++.+
T Consensus 7 ~v~iv~~~~~--~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDGt~l~~~~~~ 83 (291)
T PRK02155 7 TVALIGRYQT--PGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIG-ARADLAVVLGGDGTMLGIGRQL 83 (291)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhc-cCCCEEEEECCcHHHHHHHHHh
Confidence 5788888743 344556777777776544311 1111111 0000 01 2222 2479999999999999999998
Q ss_pred HcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 136 HNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 136 ~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
... .+|+--|.+|+-.=++ .... .++.++++.+.+|+-.
T Consensus 84 ~~~----~~pilGIn~G~lGFL~-~~~~--------~~~~~~l~~~~~g~~~ 122 (291)
T PRK02155 84 APY----GVPLIGINHGRLGFIT-DIPL--------DDMQETLPPMLAGNYE 122 (291)
T ss_pred cCC----CCCEEEEcCCCccccc-cCCH--------HHHHHHHHHHHcCCce
Confidence 654 4566557777733222 1111 2567788888888754
No 35
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.29 E-value=0.00096 Score=60.24 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=64.1
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHH----------H---HHhCCCCCceEEEEEcCcchH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQ----------W---VSLMPSSGQTLILAAGGDGTA 128 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~----------~---~~~~~~~~~~~iv~~GGDGTl 128 (316)
|++.||+|+. +..+.+...++.+.|.+.++............. . ..++. +..|.||++|||||+
T Consensus 1 m~igii~~~~--~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDGT~ 77 (292)
T PRK01911 1 MKIAIFGQTY--QESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGDGTF 77 (292)
T ss_pred CEEEEEeCCC--CHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCcHHH
Confidence 3567888873 334455677777777655432111111100000 0 01222 237999999999999
Q ss_pred HHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 129 AWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 129 ~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
-.++..+... .+|+--|-+|+ ||+=...+ ..+..++++.+.+|+..
T Consensus 78 L~aa~~~~~~----~~PilGIN~G~-------lGFLt~~~--~~~~~~~l~~i~~g~~~ 123 (292)
T PRK01911 78 LRTATYVGNS----NIPILGINTGR-------LGFLATVS--KEEIEETIDELLNGDYT 123 (292)
T ss_pred HHHHHHhcCC----CCCEEEEecCC-------CCcccccC--HHHHHHHHHHHHcCCce
Confidence 9998877654 46666677777 55433211 02567788999998754
No 36
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.18 E-value=0.0012 Score=59.42 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=63.7
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHH---H-HHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQ---W-VSLMPSSGQTLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~---~-~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
++.++.||. . .+.+..+++.+.|++.++............. . ..++. ++.|.||++|||||+-.++..+...
T Consensus 12 ~i~ii~~~~--~-~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDGT~L~aa~~~~~~ 87 (287)
T PRK14077 12 KIGLVTRPN--V-SLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELF-KISDFLISLGGDGTLISLCRKAAEY 87 (287)
T ss_pred EEEEEeCCc--H-HHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcc-cCCCEEEEECCCHHHHHHHHHhcCC
Confidence 588999985 3 5566777888877655432111111100000 0 01221 2379999999999999888877654
Q ss_pred CCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCC
Q psy16024 139 KLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKV 186 (316)
Q Consensus 139 ~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~ 186 (316)
.+|+--|-+|+ ||+=...+ ..+..++++.+.+|+.
T Consensus 88 ----~~PilGIN~G~-------lGFLt~~~--~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 88 ----DKFVLGIHAGH-------LGFLTDIT--VDEAEKFFQAFFQGEF 122 (287)
T ss_pred ----CCcEEEEeCCC-------cccCCcCC--HHHHHHHHHHHHcCCC
Confidence 45655567776 55432211 0256778888888863
No 37
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.16 E-value=0.0012 Score=60.04 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=64.5
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEE-cccCChHHHH----HH-----------HHhCCCCCceEEEEEcCcc
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVD-LADKSPEEAL----QW-----------VSLMPSSGQTLILAAGGDG 126 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~-~~t~~~~~~~----~~-----------~~~~~~~~~~~iv~~GGDG 126 (316)
++.++.|+.. ..+.+..+++.+.|...++.. +......... .. ...+. +..|.||++||||
T Consensus 7 ~I~iv~~~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDG 83 (306)
T PRK03372 7 RVLLVAHTGR--DEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAA-DGCELVLVLGGDG 83 (306)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcc-cCCCEEEEEcCCH
Confidence 4888888743 344556677777776544311 1111111000 00 01111 2369999999999
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 127 TAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 127 Tl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
|+-.++..+... .+||--|.+|+ +|+-...+ ..+..++++.+.+|...
T Consensus 84 T~L~aar~~~~~----~~PilGIN~G~-------lGFL~~~~--~~~~~~~l~~i~~g~y~ 131 (306)
T PRK03372 84 TILRAAELARAA----DVPVLGVNLGH-------VGFLAEAE--AEDLDEAVERVVDRDYR 131 (306)
T ss_pred HHHHHHHHhccC----CCcEEEEecCC-------CceeccCC--HHHHHHHHHHHHcCCce
Confidence 999999887654 46777788888 44322110 02667899999998754
No 38
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.06 E-value=0.0013 Score=59.72 Aligned_cols=109 Identities=14% Similarity=0.029 Sum_probs=62.9
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHHH----------------HHhCCCCCceEEEEEcCcc
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQW----------------VSLMPSSGQTLILAAGGDG 126 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~----------------~~~~~~~~~~~iv~~GGDG 126 (316)
++.|++|+. +..+.+...++.+.|.+.++.........+.... ...+.+ ..|.+|++||||
T Consensus 3 ~igiv~n~~--~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dlvi~iGGDG 79 (305)
T PRK02649 3 KAGIIYNDG--KPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDS-SMKFAIVLGGDG 79 (305)
T ss_pred EEEEEEcCC--CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhccc-CcCEEEEEeCcH
Confidence 477888873 3345566777877776554321111110000000 012221 369999999999
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 127 TAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 127 Tl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
|+-.++..+... .+|+--|-+|+ ||+=...+ ..+..++++.+.+|+..
T Consensus 80 TlL~aar~~~~~----~iPilGIN~G~-------lGFLt~~~--~~~~~~~l~~l~~g~y~ 127 (305)
T PRK02649 80 TVLSAARQLAPC----GIPLLTINTGH-------LGFLTEAY--LNQLDEAIDQVLAGQYT 127 (305)
T ss_pred HHHHHHHHhcCC----CCcEEEEeCCC-------CcccccCC--HHHHHHHHHHHHcCCcE
Confidence 999999887654 45665567776 44322111 02567889999988743
No 39
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.96 E-value=0.007 Score=57.99 Aligned_cols=60 Identities=23% Similarity=0.475 Sum_probs=41.5
Q ss_pred CceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 115 GQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 115 ~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
..|.||++|||||+-.++..+... .+||--|.+|+ ||+=..++ ..+..++++.|.+|...
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~~----~iPILGIN~G~-------LGFLt~i~--~~e~~~~Le~il~G~y~ 321 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKGP----VPPVVPFSMGS-------LGFMTPFH--SEQYRDCLDAILKGPIS 321 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhccC----CCcEEEEeCCC-------cceecccC--HHHHHHHHHHHHcCCce
Confidence 379999999999999999877543 35665567776 44322111 02567889999988643
No 40
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.92 E-value=0.0024 Score=57.79 Aligned_cols=109 Identities=17% Similarity=-0.030 Sum_probs=63.7
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCCh-HHHH-------HH--HHhCCCCCceEEEEEcCcchHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSP-EEAL-------QW--VSLMPSSGQTLILAAGGDGTAAW 130 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~-~~~~-------~~--~~~~~~~~~~~iv~~GGDGTl~~ 130 (316)
++.||.|+.. ..+.+...++.+.|.+.+ ++.-..... +... .. ..++.. ..|.||++|||||+-.
T Consensus 7 ~i~ii~~~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi~lGGDGT~L~ 83 (296)
T PRK04539 7 NIGIVTRPNT--PDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQ-YCDLVAVLGGDGTFLS 83 (296)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCc-CCCEEEEECCcHHHHH
Confidence 5888888744 345556777777776544 321110000 0000 00 012222 3799999999999999
Q ss_pred HHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 131 ILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 131 v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
++..+... .+||--|-.|+ +|+-...+ ..+..++++.+.+|+..
T Consensus 84 aa~~~~~~----~~PilGIN~G~-------lGFL~~~~--~~~~~~~l~~i~~g~~~ 127 (296)
T PRK04539 84 VAREIAPR----AVPIIGINQGH-------LGFLTQIP--REYMTDKLLPVLEGKYL 127 (296)
T ss_pred HHHHhccc----CCCEEEEecCC-------CeEeeccC--HHHHHHHHHHHHcCCce
Confidence 98887654 45666677776 55433221 12567788888888643
No 41
>PLN02727 NAD kinase
Probab=96.82 E-value=0.0053 Score=62.46 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=81.8
Q ss_pred CccccccceEEEEechHHHHHhhccChhhceeeecCCeeecCCCceeeeecCCCCCCCCCCccccccccCCCCCCCCcch
Q psy16024 1 MSIAFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGVDLWKLGRGNRKSGNGDGSHI 80 (316)
Q Consensus 1 ~~~r~~nk~~y~~~~~~~~~~~~~~~l~~~i~l~~d~~~~~lp~l~~i~~~ni~s~~~g~~~~~~vivNp~sG~~~~~~~ 80 (316)
|+||-|+-|.|++.... +|... .+ +-..-...-|+-+-.. ..|. .....++||.++.. .....
T Consensus 632 ~~~~~~~~~~~~~t~~~-----~c~~~--~~--~~~~~~~~~~s~~~~~----l~W~-~p~rtVgIV~K~~~---ea~~~ 694 (986)
T PLN02727 632 VQSRRKAEMFLVRTDGF-----SCTRE--KV--TESSLAFTHPSTQQQM----LMWK-STPKTVLLLKKLGQ---ELMEE 694 (986)
T ss_pred eeccCCcceEEEEecCc-----ceeeh--hh--ccccccccCcchhcee----eecC-CCCCEEEEEcCCcH---HHHHH
Confidence 57888899988886552 22211 00 0000011122222222 2254 22457888888865 34445
Q ss_pred HHHHHhhcCCc-eEEEcccCChHHHH----HH----------HHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCc
Q psy16024 81 LSTFRRLLNPL-QVVDLADKSPEEAL----QW----------VSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPS 145 (316)
Q Consensus 81 ~~~~~~~l~~~-~v~~~~t~~~~~~~----~~----------~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~ 145 (316)
..++.+.|... ++..+......+.. .+ ..++. +..|.||++|||||+-.++..+... .+|
T Consensus 695 ~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGGDGTlLrAar~~~~~----~iP 769 (986)
T PLN02727 695 AKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGGDGVILHASNLFRGA----VPP 769 (986)
T ss_pred HHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcc-cCCCEEEEECCcHHHHHHHHHhcCC----CCC
Confidence 56666666553 33211111111111 00 01111 2379999999999999999887654 467
Q ss_pred EEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCC
Q psy16024 146 VGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKV 186 (316)
Q Consensus 146 lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~ 186 (316)
|--|-+|+ ||+=.... ..+..++++.+.+|..
T Consensus 770 ILGINlGr-------LGFLTdi~--~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 770 VVSFNLGS-------LGFLTSHY--FEDFRQDLRQVIHGNN 801 (986)
T ss_pred EEEEeCCC-------ccccccCC--HHHHHHHHHHHHcCCc
Confidence 76688886 66533221 0144567888888763
No 42
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.66 E-value=0.0046 Score=55.04 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=59.6
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDP 142 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~ 142 (316)
++.++.|+ +.++.+..+++.+.|+..++. +. .++.|.+++.|||||+-.++..+... ..
T Consensus 2 ~i~Ii~~~---~~~~~~~~~~l~~~l~~~g~~-~~---------------~~~~Dlvi~iGGDGT~L~a~~~~~~~--~~ 60 (265)
T PRK04885 2 KVAIISNG---DPKSKRVASKLKKYLKDFGFI-LD---------------EKNPDIVISVGGDGTLLSAFHRYENQ--LD 60 (265)
T ss_pred EEEEEeCC---CHHHHHHHHHHHHHHHHcCCc-cC---------------CcCCCEEEEECCcHHHHHHHHHhccc--CC
Confidence 45666663 334556677777777655432 10 12369999999999999988877652 12
Q ss_pred CCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 143 APSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 143 ~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
.+|+--|.+|+-.=++ .+.. .+..++++.+.+|+..
T Consensus 61 ~iPilGIN~G~lGFL~-~~~~--------~~~~~~l~~i~~g~y~ 96 (265)
T PRK04885 61 KVRFVGVHTGHLGFYT-DWRP--------FEVDKLVIALAKDPGQ 96 (265)
T ss_pred CCeEEEEeCCCceecc-cCCH--------HHHHHHHHHHHcCCce
Confidence 4666667777722222 2211 1567899999998754
No 43
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.62 E-value=0.012 Score=52.38 Aligned_cols=96 Identities=11% Similarity=0.101 Sum_probs=59.0
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDP 142 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~ 142 (316)
.+.++.|+.. .+.++..++.+.|+++++..... . +..|.|+++|||||+-.++..+... .
T Consensus 4 ~i~iv~~~~~---~a~~~~~~l~~~l~~~g~~~~~~------------~--~~~D~vi~lGGDGT~L~a~~~~~~~---~ 63 (264)
T PRK03501 4 NLFFFYKRDK---ELVEKVKPLKKIAEEYGFTVVDH------------P--KNANIIVSIGGDGTFLQAVRKTGFR---E 63 (264)
T ss_pred EEEEEECCCH---HHHHHHHHHHHHHHHCCCEEEcC------------C--CCccEEEEECCcHHHHHHHHHhccc---C
Confidence 4667777654 45566777888777655432111 1 2268999999999998888776432 1
Q ss_pred CCcEEEecC-CCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 143 APSVGIIPL-GTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 143 ~~~lgiiP~-GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
.+|+--|.+ |+ +|+=..++ ..+..++++.+.+|+..
T Consensus 64 ~~pilgIn~~G~-------lGFL~~~~--~~~~~~~l~~i~~g~~~ 100 (264)
T PRK03501 64 DCLYAGISTKDQ-------LGFYCDFH--IDDLDKMIQAITKEEIE 100 (264)
T ss_pred CCeEEeEecCCC-------CeEcccCC--HHHHHHHHHHHHcCCcE
Confidence 355434555 64 44422111 02567888888888743
No 44
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.48 E-value=0.014 Score=51.84 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=55.5
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDP 142 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~ 142 (316)
++.++.+|. +.+.++++.+.|.+++.......... . ...+.|.|+++|||||+-.++..+
T Consensus 2 ~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~-------~-~~~~~d~vi~iGGDGT~L~a~~~~------- 61 (256)
T PRK14075 2 KLGIFYREE-----KEKEAKFLKEKISKEHEVVEFCEASA-------S-GKVTADLIIVVGGDGTVLKAAKKV------- 61 (256)
T ss_pred EEEEEeCcc-----HHHHHHHHHHHHHHcCCeeEeecccc-------c-ccCCCCEEEEECCcHHHHHHHHHc-------
Confidence 445554444 34566777777765543211111111 1 112369999999999998888765
Q ss_pred CCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcc
Q psy16024 143 APSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAH 188 (316)
Q Consensus 143 ~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~ 188 (316)
.+|+--|..|+ +|.-.... ..+..++++.+.+|+...
T Consensus 62 ~~Pilgin~G~-------lGfl~~~~--~~~~~~~l~~~~~g~~~~ 98 (256)
T PRK14075 62 GTPLVGFKAGR-------LGFLSSYT--LEEIDRFLEDLKNWNFRE 98 (256)
T ss_pred CCCEEEEeCCC-------CccccccC--HHHHHHHHHHHHcCCcEE
Confidence 24554566666 44432211 014577888888887543
No 45
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.39 E-value=0.018 Score=51.00 Aligned_cols=68 Identities=24% Similarity=0.286 Sum_probs=41.6
Q ss_pred CceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHH-HHHHHHccCCcceeeEE
Q psy16024 115 GQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQ-ILDNLTRSKVAHLDRWS 193 (316)
Q Consensus 115 ~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~-~l~~l~~~~~~~~D~~~ 193 (316)
..|.|+++|||||+-.++..+... .+|+--|.+|+ +|.=..++ ..+..+ +++.+.+.......+.+
T Consensus 33 ~~D~vi~iGGDGT~L~a~~~~~~~----~iPilGIN~G~-------lGFL~~~~--~~~~~~~~~~~l~~~~~~~r~~L~ 99 (259)
T PRK00561 33 GADYLFVLGGDGFFVSTAANYNCA----GCKVVGINTGH-------LGFYTSFN--ETDLDQNFANKLDQLKFTQIDLLE 99 (259)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCC----CCcEEEEecCC-------CccccccC--HHHHHHHHHHHHhhCCeEEEEEEE
Confidence 369999999999999988876543 46766677776 44432111 013444 55566544443444444
Q ss_pred EE
Q psy16024 194 VQ 195 (316)
Q Consensus 194 v~ 195 (316)
+.
T Consensus 100 ~~ 101 (259)
T PRK00561 100 VQ 101 (259)
T ss_pred EE
Confidence 44
No 46
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=96.26 E-value=0.0088 Score=49.12 Aligned_cols=63 Identities=46% Similarity=0.862 Sum_probs=51.4
Q ss_pred CccccccceEEEEechHHHHHhhccChhhceeeecCCeeecCC-CceeeeecCCCCCCCCCCcc
Q psy16024 1 MSIAFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLP-PIESVVVLNIPSWASGVDLW 63 (316)
Q Consensus 1 ~~~r~~nk~~y~~~~~~~~~~~~~~~l~~~i~l~~d~~~~~lp-~l~~i~~~ni~s~~~g~~~~ 63 (316)
||+|+.+|+.|+..+.+.+....++.+...+++++|++....+ ....+.+.|.+++++|...|
T Consensus 29 ~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~v~v~N~~~~ggG~~i~ 92 (160)
T smart00045 29 FNSRLKNKMWYFELGTKDLFFRTCKDLHERIELECDGVDVDLPNSLEGIAVLNIPSYGGGTNLW 92 (160)
T ss_pred hcccceeeeeeeecchHHhhhccccchhhceEEEECCEeccCCCCccEEEEECCCccccCcccc
Confidence 3567889999999999888665666666678889999988888 67788899999998887766
No 47
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.16 E-value=0.015 Score=51.88 Aligned_cols=107 Identities=17% Similarity=0.103 Sum_probs=56.4
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHHHH-HhCCCCCceEEEEEcCcchHHHHHHHHHcCCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWV-SLMPSSGQTLILAAGGDGTAAWILNTIHNMKL 140 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~-~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~ 140 (316)
|++.+++|+.. ..+.+...++.+.|. .++..+............ ........|.++++|||||+-.++..+.
T Consensus 1 m~i~iv~~~~~--~~~~~~~~~i~~~l~-~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~a~~~~~---- 73 (271)
T PRK01185 1 MKVAFVIRKDC--KRCIKIAKSIIELLP-PDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDGTILRTLQRAK---- 73 (271)
T ss_pred CEEEEEecCCC--HHHHHHHHHHHHHHh-cCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcHHHHHHHHHcC----
Confidence 35778888743 344556667777663 332211111111110000 0101114799999999999877665431
Q ss_pred CCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 141 DPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 141 ~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
+|+--|-.|+ +|+-..++ ..+..++++.+.+|.-.
T Consensus 74 ---~PilGIN~G~-------lGFL~~~~--~~~~~~~l~~i~~g~~~ 108 (271)
T PRK01185 74 ---GPILGINMGG-------LGFLTEIE--IDEVGSAIKKLIRGEYF 108 (271)
T ss_pred ---CCEEEEECCC-------CccCcccC--HHHHHHHHHHHHcCCcE
Confidence 2444457776 34322111 02567788999988743
No 48
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.93 E-value=0.024 Score=56.20 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=65.0
Q ss_pred CCccccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCC-hHHHHH-HHH---h-CCCCCceEEEEEcCcchHHHHHH
Q psy16024 60 VDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKS-PEEALQ-WVS---L-MPSSGQTLILAAGGDGTAAWILN 133 (316)
Q Consensus 60 ~~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~-~~~~~~-~~~---~-~~~~~~~~iv~~GGDGTl~~v~n 133 (316)
..+++.||.|+. +..+.+...++.+.|.+.++....... .....+ +.. . ....+.|.||++|||||+-.++.
T Consensus 289 ~~~~i~iv~~~~--~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L~aa~ 366 (569)
T PRK14076 289 KPTKFGIVSRID--NEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTVLRASK 366 (569)
T ss_pred CCcEEEEEcCCC--CHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHHHHHHHH
Confidence 345688888874 334455666777766554431111111 000000 000 0 00113699999999999999988
Q ss_pred HHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 134 TIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 134 ~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
.+... .+||--|-+|+ ||+-..+. ..+..++++.+.+|+..
T Consensus 367 ~~~~~----~~PilGin~G~-------lGFL~~~~--~~~~~~~l~~~~~g~~~ 407 (569)
T PRK14076 367 LVNGE----EIPIICINMGT-------VGFLTEFS--KEEIFKAIDSIISGEYE 407 (569)
T ss_pred HhcCC----CCCEEEEcCCC-------CCcCcccC--HHHHHHHHHHHHcCCce
Confidence 77644 46666688888 44432211 12667889999998754
No 49
>PLN02929 NADH kinase
Probab=95.63 E-value=0.041 Score=49.76 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=43.6
Q ss_pred CceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCC---------cchh--hhhhCCCCCCCCCCCCHHHHHHHHHc
Q psy16024 115 GQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGT---------GNDL--SRVLGWGKLYDRDTCSPFQILDNLTR 183 (316)
Q Consensus 115 ~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GT---------gNd~--Ar~lg~~~~~~~~~~~~~~~l~~l~~ 183 (316)
..|.||++|||||+-.++..+ .. .+||-=|-.|+ .|.| -|++|.=.... ..+..++++.+.+
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~-~~----~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~--~~~~~~~L~~il~ 136 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL-DD----SIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT--AEDFEQVLDDVLF 136 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc-CC----CCcEEEEECCCcccccccccccccccccCccccccCC--HHHHHHHHHHHHc
Confidence 379999999999999988877 43 34554466664 1333 34566533221 1256788999999
Q ss_pred cCCcc
Q psy16024 184 SKVAH 188 (316)
Q Consensus 184 ~~~~~ 188 (316)
|....
T Consensus 137 g~~~~ 141 (301)
T PLN02929 137 GRLKP 141 (301)
T ss_pred CCceE
Confidence 87543
No 50
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.57 E-value=0.044 Score=49.02 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=37.2
Q ss_pred CceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHc-cC
Q psy16024 115 GQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTR-SK 185 (316)
Q Consensus 115 ~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~-~~ 185 (316)
..|.|+++|||||+-.++..+... .+|+--|.+|+ +|+=..+. ..+..+.++.+.+ |+
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~~----~~PilgIn~G~-------lGFL~~~~--~~~~~~~l~~~~~~g~ 100 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAKY----DIPLIGINRGN-------LGFLTDID--PKNAYEQLEACLERGE 100 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhccC----CCcEEEEeCCC-------CcccccCC--HHHHHHHHHHHHhcCC
Confidence 379999999999999988877554 35555567777 55432111 0133456666666 65
No 51
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=93.90 E-value=0.4 Score=43.18 Aligned_cols=61 Identities=26% Similarity=0.301 Sum_probs=43.0
Q ss_pred CCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 114 SGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 114 ~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
+..|.|++.|||||+-.+++.+... .+|+--|-.|+ +|+=..+. ..+.+++++.+.+++.+
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~----~~pilgin~G~-------lGFLt~~~--~~~~~~~~~~~~~~~~~ 114 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARL----DIPVLGINLGH-------LGFLTDFE--PDELEKALDALLEGEYR 114 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccC----CCCEEEEeCCC-------cccccccC--HHHHHHHHHHHhcCceE
Confidence 4589999999999999999888765 35666666665 55433221 12567888888886555
No 52
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=93.72 E-value=0.26 Score=43.37 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=27.5
Q ss_pred CceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCC
Q psy16024 115 GQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGT 153 (316)
Q Consensus 115 ~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GT 153 (316)
..|.|+++|||||+-.++..+... .+|+--|.+|+
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~~----~~PvlGIN~G~ 59 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMNS----GKPVYGMNRGS 59 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcCC----CCeEEEEeCCC
Confidence 369999999999999988877654 35665577776
No 53
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=90.28 E-value=1.3 Score=35.83 Aligned_cols=75 Identities=20% Similarity=0.448 Sum_probs=47.4
Q ss_pred CCCCCcchHHHHHhhcCCceE-EEc----ccCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHHHHHcCCCCCCCcE
Q psy16024 73 GNGDGSHILSTFRRLLNPLQV-VDL----ADKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILNTIHNMKLDPAPSV 146 (316)
Q Consensus 73 G~~~~~~~~~~~~~~l~~~~v-~~~----~t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n~l~~~~~~~~~~l 146 (316)
|+.......++....|+.+++ +++ ....|+...++++++..++.++ |.++|+++-|--++.++-.. |.|
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~-----PVI 82 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTL-----PVI 82 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS------EE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCC-----CEE
Confidence 333344566777777776543 221 1346788889999987765654 67789999999999998653 566
Q ss_pred EEecCCC
Q psy16024 147 GIIPLGT 153 (316)
Q Consensus 147 giiP~GT 153 (316)
|+ |.-+
T Consensus 83 gv-P~~~ 88 (150)
T PF00731_consen 83 GV-PVSS 88 (150)
T ss_dssp EE-EE-S
T ss_pred Ee-ecCc
Confidence 66 6543
No 54
>KOG4180|consensus
Probab=89.14 E-value=0.38 Score=43.42 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=45.0
Q ss_pred ceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEE--ecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcce
Q psy16024 116 QTLILAAGGDGTAAWILNTIHNMKLDPAPSVGI--IPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHL 189 (316)
Q Consensus 116 ~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgi--iP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~ 189 (316)
.|.||.+|||||+--...-+... ..|.||+ =|.|+---+.-.-..+ .++..++..+..|.-..+
T Consensus 106 aD~VisvGGDGTfL~Aasrv~~~---~~PViGvNtDP~~Seg~lcL~~~~~-------~n~~~al~k~~sgnF~wv 171 (395)
T KOG4180|consen 106 ADMVISVGGDGTFLLAASRVIDD---SKPVIGVNTDPTGSEGHLCLPDKYP-------SNPAGALCKLTSGNFEWV 171 (395)
T ss_pred hhEEEEecCccceeehhhhhhcc---CCceeeecCCCCcCcceEeccccCC-------CCcHHHHHHHHhccHHHh
Confidence 69999999999997777655443 3567777 4777765554433333 278889999988876554
No 55
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=88.89 E-value=1.3 Score=41.75 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=37.9
Q ss_pred CceEEEEEcCcchHHHHHHHHHcC---CCC---CCCcEEEecCCCcchhhhhhCC
Q psy16024 115 GQTLILAAGGDGTAAWILNTIHNM---KLD---PAPSVGIIPLGTGNDLSRVLGW 163 (316)
Q Consensus 115 ~~~~iv~~GGDGTl~~v~n~l~~~---~~~---~~~~lgiiP~GTgNd~Ar~lg~ 163 (316)
..-.|+++|||--++.|+....+. ... .-..+-+||+|+ |.+||.||-
T Consensus 75 ~~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 75 PPVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred CceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHhc
Confidence 367799999999999999887553 111 235689999999 999999975
No 56
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=87.81 E-value=1.3 Score=40.96 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=53.2
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc---eEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL---QVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~---~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
+++|+..+...+ ...+++...|+.. .++.......+...++.+.+.+.+.|.||++|| |++.++.-.+...
T Consensus 27 ~~liv~d~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGG-Gs~~D~aK~~a~~- 100 (339)
T cd08173 27 RVLVVTGPTTKS----IAGKKVEALLEDEGEVDVVIVEDATYEEVEKVESSARDIGADFVIGVGG-GRVIDVAKVAAYK- 100 (339)
T ss_pred eEEEEECCchHH----HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCC-chHHHHHHHHHHh-
Confidence 567777654432 2456666666543 223222234455666666666666899999998 8999998777532
Q ss_pred CCCCCcEEEecCCCc
Q psy16024 140 LDPAPSVGIIPLGTG 154 (316)
Q Consensus 140 ~~~~~~lgiiP~GTg 154 (316)
..+|+..||.=.+
T Consensus 101 --~~~p~i~iPTT~~ 113 (339)
T cd08173 101 --LGIPFISVPTAAS 113 (339)
T ss_pred --cCCCEEEecCccc
Confidence 2578999997433
No 57
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=87.38 E-value=1.8 Score=41.66 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=45.1
Q ss_pred hHHHHHHHHhCCCCCceEEEEEcCcchHHHHHH---HHHcCCCCCCCcEEEecCCCcchhh---hhhCCCC
Q psy16024 101 PEEALQWVSLMPSSGQTLILAAGGDGTAAWILN---TIHNMKLDPAPSVGIIPLGTGNDLS---RVLGWGK 165 (316)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n---~l~~~~~~~~~~lgiiP~GTgNd~A---r~lg~~~ 165 (316)
+.+..++++.+.+.+.+.++++|||||+..+.. .+.++ ..++++--||-==-||+. +++|...
T Consensus 162 ~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~--g~~I~VIGIPKTIDNDI~~td~S~GFdT 230 (459)
T PTZ00286 162 GFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRR--KLNISVVGIPKTIDNDIPIIDESFGFQT 230 (459)
T ss_pred hhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHh--CCCceEEEeccccCCCCCCcccCcCchH
Confidence 345556666777777899999999999976543 33323 235888999998899986 5666643
No 58
>KOG2178|consensus
Probab=85.82 E-value=0.38 Score=44.54 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=40.9
Q ss_pred CceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCC
Q psy16024 115 GQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKV 186 (316)
Q Consensus 115 ~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~ 186 (316)
.+|.||.+||||||--+.+-+.+. -||+--+-+|| ||+=..++ -.+..+.+..+.+++.
T Consensus 168 ~~D~iItLGGDGTvL~aS~LFq~~----VPPV~sFslGs-------lGFLtpf~--f~~f~~~l~~v~~~~~ 226 (409)
T KOG2178|consen 168 RFDLIITLGGDGTVLYASSLFQRS----VPPVLSFSLGS-------LGFLTPFP--FANFQEQLARVLNGRA 226 (409)
T ss_pred ceeEEEEecCCccEEEehhhhcCC----CCCeEEeecCC-------cccccccc--HHHHHHHHHHHhcCcc
Confidence 489999999999998777655443 47887777886 66533221 0145677888888874
No 59
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=85.73 E-value=2.7 Score=39.22 Aligned_cols=95 Identities=22% Similarity=0.306 Sum_probs=55.3
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCc----eEEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPL----QVVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~----~v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l 135 (316)
.+++|+.-+.+-... ..++++.+.|... .+++ +... .-+...+.++.+.+.+.|.||++|| |++.++.-.+
T Consensus 26 ~r~lvVt~~~~~~~~--g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~aK~i 102 (357)
T cd08181 26 KRALIVTGKSSAKKN--GSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAAKAI 102 (357)
T ss_pred CEEEEEeCCchHhhc--CcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 367777665543222 2345666666542 2232 2222 2244555555555556899999999 7887777654
Q ss_pred Hc--------------CCCCCCCcEEEecC--CCcchhhh
Q psy16024 136 HN--------------MKLDPAPSVGIIPL--GTGNDLSR 159 (316)
Q Consensus 136 ~~--------------~~~~~~~~lgiiP~--GTgNd~Ar 159 (316)
.- ......+|+..||. |||-...+
T Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~ 142 (357)
T cd08181 103 AVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQ 142 (357)
T ss_pred HHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCC
Confidence 21 00123579999998 78776665
No 60
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=85.65 E-value=1.9 Score=40.47 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=53.3
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce----EEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l 135 (316)
.+++||..+.+-. ....++++.+.|+..+ +++ +... .-+...+.++.+.+.+.|.||++|| |++.++.-.+
T Consensus 26 ~r~livt~~~~~~--~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~aK~i 102 (380)
T cd08185 26 KKALIVTGNGSSK--KTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTAKAI 102 (380)
T ss_pred CeEEEEeCCCchh--hccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHHH
Confidence 3677777655421 1235667777765432 232 1111 2233444444444445799999998 6777766554
Q ss_pred HcC-------------------C-CCCCCcEEEecC--CCcchhhhh
Q psy16024 136 HNM-------------------K-LDPAPSVGIIPL--GTGNDLSRV 160 (316)
Q Consensus 136 ~~~-------------------~-~~~~~~lgiiP~--GTgNd~Ar~ 160 (316)
.-. . ....+|+..||. |||--..+.
T Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 149 (380)
T cd08185 103 AFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPW 149 (380)
T ss_pred HHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCe
Confidence 211 0 113578999997 776554443
No 61
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=85.36 E-value=1.8 Score=40.78 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=54.1
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+..+.+-... ..++++.+.|+..+ ++. +... ..+...+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 28 r~livtd~~~~~~~--g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ia 104 (383)
T cd08186 28 KVLLVTGKSAYKKS--GAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAKSAA 104 (383)
T ss_pred EEEEEcCccHHhhc--ChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHHHH
Confidence 67777765543222 23566666665432 232 1111 2244455555555555799999999 77777765542
Q ss_pred c---CC-------------CCCCCcEEEecC--CCcchhhhhh
Q psy16024 137 N---MK-------------LDPAPSVGIIPL--GTGNDLSRVL 161 (316)
Q Consensus 137 ~---~~-------------~~~~~~lgiiP~--GTgNd~Ar~l 161 (316)
- .+ ....+|+..||. |||--..+.-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~a 147 (383)
T cd08186 105 ILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRFA 147 (383)
T ss_pred HHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCeE
Confidence 2 10 012468999998 8866555433
No 62
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=84.76 E-value=1.7 Score=41.63 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=42.9
Q ss_pred hHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHH---HHcCCCCCCCcEEEecCCCcchhh---hhhCCC
Q psy16024 101 PEEALQWVSLMPSSGQTLILAAGGDGTAAWILNT---IHNMKLDPAPSVGIIPLGTGNDLS---RVLGWG 164 (316)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~---l~~~~~~~~~~lgiiP~GTgNd~A---r~lg~~ 164 (316)
+.+..++++.+.+.+.+.++++|||||+.-+..- +.++ ...+++--||-==-||+. +++|..
T Consensus 158 ~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~--g~~I~VIGIPKTIDNDi~~td~S~GFd 225 (443)
T PRK06830 158 PQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERR--GLKISVIGIPKTIDNDINFIQKSFGFE 225 (443)
T ss_pred chhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHh--CCCceEEEeccccCCCCcCcccCCCHH
Confidence 3445566666666678999999999999765532 2223 235788889988899986 455553
No 63
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=84.66 E-value=2.4 Score=39.00 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=51.4
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCC---ceEEEccc--CChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHc
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNP---LQVVDLAD--KSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHN 137 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~---~~v~~~~t--~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~ 137 (316)
+++||..+..-+ ...+++.+.|+. ..++.... ..-+...++++.+.+.+.|.||++|| |++.++.-.+..
T Consensus 25 ~~liv~~~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~~D~aK~ia~ 99 (332)
T cd07766 25 RALVVSDEGVVK----GVGEKVADSLKKLIAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-GSTLDTAKAVAA 99 (332)
T ss_pred eEEEEeCCchhh----hHHHHHHHHHHhcCcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-chHHHHHHHHHH
Confidence 577777654433 345556666643 23333222 12344555555555455899999987 888888876644
Q ss_pred CCCCCCCcEEEecC--CCc
Q psy16024 138 MKLDPAPSVGIIPL--GTG 154 (316)
Q Consensus 138 ~~~~~~~~lgiiP~--GTg 154 (316)
.- ...+|+..||. |||
T Consensus 100 ~~-~~~~p~i~iPTt~~tg 117 (332)
T cd07766 100 LL-NRGLPIIIVPTTAATG 117 (332)
T ss_pred Hh-cCCCCEEEEeCCCchh
Confidence 31 12579999997 555
No 64
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=84.14 E-value=3.1 Score=38.29 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=49.4
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCC---ceEEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH--
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNP---LQVVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTI-- 135 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~---~~v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l-- 135 (316)
+++||..+...+ ...++++.+.|+. ..+++ +... ..+...+.++.+.+.+.|.||++|| |++.++.-.+
T Consensus 24 ~~lvv~~~~~~~---~g~~~~v~~~l~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~aKa~a~ 99 (332)
T cd08180 24 RVLIVTDPFMVK---SGMLDKVTDHLDSSIEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGG-GSAIDAAKAIIY 99 (332)
T ss_pred eEEEEeCchhhh---CccHHHHHHHHHhcCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECC-chHHHHHHHHHH
Confidence 677777653322 1245555655543 22332 2222 2233445555554456899999999 6777777643
Q ss_pred -HcCC-CCCCCcEEEecC--CCcc
Q psy16024 136 -HNMK-LDPAPSVGIIPL--GTGN 155 (316)
Q Consensus 136 -~~~~-~~~~~~lgiiP~--GTgN 155 (316)
.... ..+.+|+..||. |||=
T Consensus 100 ~~~~~~~~~~~p~i~VPTtagtgs 123 (332)
T cd08180 100 FAKKLGKKKKPLFIAIPTTSGTGS 123 (332)
T ss_pred HHhCCCCCCCCCEEEeCCCCcchH
Confidence 2211 223579999997 7763
No 65
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=84.07 E-value=2.9 Score=39.22 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=52.1
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EEEcccC--ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVDLADK--SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~~~t~--~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++||..+.+-. ...++++.+.|+..+ +++-... ..+...+.++.+...+.|.||++|| |++.++.-.+.
T Consensus 25 r~livt~~~~~~---~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AKaia 100 (375)
T cd08194 25 RPLIVTDKVMVK---LGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAKAIA 100 (375)
T ss_pred eEEEEcCcchhh---cchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHH
Confidence 577777654431 124566777776432 2321121 2334555555555556899999998 77777765542
Q ss_pred ---cCC------------CCCCCcEEEecC--CCcchh
Q psy16024 137 ---NMK------------LDPAPSVGIIPL--GTGNDL 157 (316)
Q Consensus 137 ---~~~------------~~~~~~lgiiP~--GTgNd~ 157 (316)
..+ ....+|+..||. |||=-.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~ 138 (375)
T cd08194 101 VLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEV 138 (375)
T ss_pred HHHhCCCCHHHHhCcccccCCCCCEEEECCCCcccccc
Confidence 110 123478999997 665443
No 66
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=83.97 E-value=2.6 Score=39.62 Aligned_cols=95 Identities=15% Similarity=0.187 Sum_probs=52.8
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+..+..-. ...++++++.|+... +++ +... .-+...+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 30 ~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ia 105 (377)
T cd08176 30 KALIVTDKGLVK---IGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCAKAIG 105 (377)
T ss_pred eEEEECCchHhh---cCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHH
Confidence 566665543322 134566777775432 232 1112 2233445555554455899999998 77777665542
Q ss_pred c---C------------CCCCCCcEEEecC--CCcchhhhhh
Q psy16024 137 N---M------------KLDPAPSVGIIPL--GTGNDLSRVL 161 (316)
Q Consensus 137 ~---~------------~~~~~~~lgiiP~--GTgNd~Ar~l 161 (316)
- . .....+|+..||. |||=-..+.-
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~a 147 (377)
T cd08176 106 IVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINY 147 (377)
T ss_pred HHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcE
Confidence 1 0 0123579999998 7776654433
No 67
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=83.17 E-value=2.9 Score=38.79 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=54.4
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEE--Ecc-cCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVV--DLA-DKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~--~~~-t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
+++||..+..- ....+++++.|+...+. ... ...-+...+.+..+.+.+.|.||++|| |++.++.-.+....
T Consensus 25 ~~liv~d~~~~----~~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGG-Gs~~D~aK~ia~~~ 99 (347)
T cd08172 25 RPLIVTGPRSW----AAAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGG-GKVLDTAKAVADRL 99 (347)
T ss_pred eEEEEECHHHH----HHHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHHHh
Confidence 56777766542 23566677766443321 111 123345556666665556899999998 89999887775432
Q ss_pred CCCCCcEEEecC--CCcchhh
Q psy16024 140 LDPAPSVGIIPL--GTGNDLS 158 (316)
Q Consensus 140 ~~~~~~lgiiP~--GTgNd~A 158 (316)
.+|+..||. |||-...
T Consensus 100 ---~~p~i~VPTT~gtgse~t 117 (347)
T cd08172 100 ---GVPVITVPTLAATCAAWT 117 (347)
T ss_pred ---CCCEEEecCccccCcccc
Confidence 468899997 6654443
No 68
>PLN02564 6-phosphofructokinase
Probab=83.02 E-value=2.9 Score=40.45 Aligned_cols=61 Identities=23% Similarity=0.332 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHH---HHcCCCCCCCcEEEecCCCcchhh---hhhCCC
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNT---IHNMKLDPAPSVGIIPLGTGNDLS---RVLGWG 164 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~---l~~~~~~~~~~lgiiP~GTgNd~A---r~lg~~ 164 (316)
.+..++++.+.+.+.+.++++|||||+.-+..- +.+. ..++++.-||-==-||+. +++|..
T Consensus 163 ~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~--g~~i~VIGIPKTIDNDI~~tD~T~GFd 229 (484)
T PLN02564 163 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRR--GLKVAVAGIPKTIDNDIPVIDKSFGFD 229 (484)
T ss_pred chHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHc--CCCceEEEecccccCCCcCcccCCCHH
Confidence 345566667776778999999999999765432 2223 234668888988889986 345543
No 69
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=82.09 E-value=3.6 Score=38.20 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=51.2
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc---eEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL---QVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~---~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
+++||..+.+-.. ..+++++.|... .++.....+.+...++++.+.+.+.|.||++|| |++.++.-.+.-.
T Consensus 36 ~~livtd~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~vA~~- 109 (350)
T PRK00843 36 RALIVTGPTTKKI----AGDRVEENLEDAGDVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGG-GKVIDVAKLAAYR- 109 (350)
T ss_pred eEEEEECCcHHHH----HHHHHHHHHHhcCCeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCC-chHHHHHHHHHHh-
Confidence 6777777655422 234455555432 223222333455566666666556899999998 8999988776432
Q ss_pred CCCCCcEEEecCCCc
Q psy16024 140 LDPAPSVGIIPLGTG 154 (316)
Q Consensus 140 ~~~~~~lgiiP~GTg 154 (316)
..+|+..||.=-+
T Consensus 110 --rgip~I~IPTT~~ 122 (350)
T PRK00843 110 --LGIPFISVPTAAS 122 (350)
T ss_pred --cCCCEEEeCCCcc
Confidence 2578889997433
No 70
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=80.98 E-value=2.3 Score=39.46 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=51.0
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce----EEEccc-C-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVDLAD-K-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~~~t-~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l 135 (316)
.+++||..+.+- ....+++.+.|+..+ +++... + .-+...+.++.+.+.+.|.||++|| |++.++.-.+
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~i 97 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKVL 97 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHH
Confidence 356666654332 124566777775432 222111 1 2233445555555556899999999 8888888776
Q ss_pred HcCCCCCCCcEEEecC--CCcc
Q psy16024 136 HNMKLDPAPSVGIIPL--GTGN 155 (316)
Q Consensus 136 ~~~~~~~~~~lgiiP~--GTgN 155 (316)
...- .+|+..||. |||=
T Consensus 98 a~~~---~~p~i~VPTt~gtgs 116 (345)
T cd08171 98 ADKL---GKPVFTFPTIASNCA 116 (345)
T ss_pred HHHc---CCCEEEecCccccCc
Confidence 4431 468888997 5543
No 71
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=80.89 E-value=2.7 Score=38.60 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhh---hhCCC
Q psy16024 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSR---VLGWG 164 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar---~lg~~ 164 (316)
+..+.++.+.+.+-|.++++|||||+..+ +.|.+. .+++--||.=--||+.- ++|.+
T Consensus 82 ~~~~~~~~l~~~~Id~LivIGGdgS~~~a-~~L~~~----gi~vigiPkTIDNDl~gtd~tiGfd 141 (324)
T TIGR02483 82 GDDKIVANLKELGLDALIAIGGDGTLGIA-RRLADK----GLPVVGVPKTIDNDLEATDYTFGFD 141 (324)
T ss_pred HHHHHHHHHHHcCCCEEEEECCchHHHHH-HHHHhc----CCCEEeeccccCCCCcCCccCcCHH
Confidence 44455666666668999999999999655 455543 37888899888999963 45543
No 72
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=80.03 E-value=3.5 Score=37.47 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhh
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar 159 (316)
++-.+.++.+...+-|.++++|||||+..+. .|.+. ..+++--||.=--||+.-
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~-~L~e~---~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQ-KLYEE---GGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHH-HHHHh---hCCCEEeecccccCCCcC
Confidence 3344566666666789999999999997664 33331 147888899999999873
No 73
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=79.98 E-value=3.3 Score=38.59 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=48.5
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc----eEEEcc---c-CChHHHHHHHHhCCCCC---ceEEEEEcCcchHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL----QVVDLA---D-KSPEEALQWVSLMPSSG---QTLILAAGGDGTAAWI 131 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~----~v~~~~---t-~~~~~~~~~~~~~~~~~---~~~iv~~GGDGTl~~v 131 (316)
+++|+..+... ....+.+.+.|+.. .++.+. . .+-....++++.+.+.+ .+.||++|| |++.++
T Consensus 25 rvlvVtd~~v~----~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG-Gsv~D~ 99 (355)
T cd08197 25 KYLLVTDSNVE----DLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG-GVVGNI 99 (355)
T ss_pred eEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHHHH
Confidence 56666664322 12445566666543 222221 1 12233444444443333 358888887 899998
Q ss_pred HHHHHcCCCCCCCcEEEecC--CCcch
Q psy16024 132 LNTIHNMKLDPAPSVGIIPL--GTGND 156 (316)
Q Consensus 132 ~n~l~~~~~~~~~~lgiiP~--GTgNd 156 (316)
.-.+...- ...+|+..||. |++.|
T Consensus 100 ak~~A~~~-~rgip~I~IPTTlla~~d 125 (355)
T cd08197 100 AGLLAALL-FRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred HHHHHHHh-ccCCCEEEecCccccccc
Confidence 87664321 12478999998 67766
No 74
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=79.66 E-value=5.3 Score=37.58 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=50.8
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc----eEEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL----QVVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~----~v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+..+..-+ ...++++...|++. .+++ +... ..+...+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 32 ~~lvvtd~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ia 107 (382)
T PRK10624 32 KALIVTDKTLVK---CGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDTCKAIG 107 (382)
T ss_pred EEEEEeCcchhh---CcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHHH
Confidence 566666543221 12456666666543 2332 2211 1233444444544455899999998 77777775331
Q ss_pred ---cCC--------------CCCCCcEEEecC--CCcchhhhh
Q psy16024 137 ---NMK--------------LDPAPSVGIIPL--GTGNDLSRV 160 (316)
Q Consensus 137 ---~~~--------------~~~~~~lgiiP~--GTgNd~Ar~ 160 (316)
..+ ....+|+..||. |||=-..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~~ 150 (382)
T PRK10624 108 IISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTIN 150 (382)
T ss_pred HHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhcce
Confidence 110 113479999997 777544443
No 75
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=79.22 E-value=4 Score=38.15 Aligned_cols=88 Identities=20% Similarity=0.193 Sum_probs=50.5
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc----eEEE-ccc-CChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL----QVVD-LAD-KSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~----~v~~-~~t-~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+..+.+-. ...++++.+.|+.. .++. +.. ...+...++++.+...+.|.||++|| |++.++.-.+.
T Consensus 25 ~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK~va 100 (370)
T cd08551 25 KALIVTDPGLVK---TGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDTAKAIA 100 (370)
T ss_pred eEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHH
Confidence 566676655433 13455666666542 2232 211 23344556666665556899999999 67777765542
Q ss_pred c---CC------------CCCCCcEEEecC--CCc
Q psy16024 137 N---MK------------LDPAPSVGIIPL--GTG 154 (316)
Q Consensus 137 ~---~~------------~~~~~~lgiiP~--GTg 154 (316)
. .+ ....+|+..||. |||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 101 LLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred HHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 1 10 012579999998 666
No 76
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=79.09 E-value=4.3 Score=38.07 Aligned_cols=89 Identities=22% Similarity=0.158 Sum_probs=51.2
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc----eEEEcccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHc
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL----QVVDLADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHN 137 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~----~v~~~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~ 137 (316)
+++|+..+.+. .++++...|+.. .++++... ..+...+.++.+.+.+.|.||++|| |++.++.-.+.-
T Consensus 24 r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~ia~ 96 (374)
T cd08183 24 RVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGKAIAA 96 (374)
T ss_pred cEEEEECCchH------HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHHHHHH
Confidence 66777665443 456666666543 23332222 1234445555555556899999998 777777655421
Q ss_pred ---CC----------------CCCCCcEEEecC--CCcchhh
Q psy16024 138 ---MK----------------LDPAPSVGIIPL--GTGNDLS 158 (316)
Q Consensus 138 ---~~----------------~~~~~~lgiiP~--GTgNd~A 158 (316)
.+ ....+|+..||. |||--..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t 138 (374)
T cd08183 97 LLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVT 138 (374)
T ss_pred HHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhC
Confidence 00 013478999997 6665443
No 77
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=78.43 E-value=5.4 Score=37.56 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=46.8
Q ss_pred hHHHHHhhcCCceE----EE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHc---C------------
Q psy16024 80 ILSTFRRLLNPLQV----VD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHN---M------------ 138 (316)
Q Consensus 80 ~~~~~~~~l~~~~v----~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~---~------------ 138 (316)
.++++.+.|+..++ |+ +... ..+...+.++.+...+.|.||++|| |++-++.-.+.- .
T Consensus 47 ~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG-GS~iD~AK~ia~~~~~~~~~~~~~~~~~ 125 (383)
T PRK09860 47 MAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG-GSPHDCAKGIALVAANGGDIRDYEGVDR 125 (383)
T ss_pred cHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcCc
Confidence 56677777765432 32 1111 1233444444444456899999998 555555544321 1
Q ss_pred CCCCCCcEEEecC--CCcchhhhhhCC
Q psy16024 139 KLDPAPSVGIIPL--GTGNDLSRVLGW 163 (316)
Q Consensus 139 ~~~~~~~lgiiP~--GTgNd~Ar~lg~ 163 (316)
.....+|+..||. |||--..+.--+
T Consensus 126 ~~~~~~p~iaIPTTagTGSE~t~~avi 152 (383)
T PRK09860 126 SAKPQLPMIAINTTAGTASEMTRFCII 152 (383)
T ss_pred cCCCCCCEEEEeCCCcchhccCceEEE
Confidence 0123579999997 887766554443
No 78
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=77.51 E-value=3.8 Score=38.03 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=51.4
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EEEcccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHc
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVDLADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHN 137 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~ 137 (316)
+++|+..+.+-. ...+++.+.|+... ++.+... ..+...+.++.+.+.+.|.||++|| |++.++.-.+..
T Consensus 24 ~~liv~~~~~~~----~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~ia~ 98 (349)
T cd08550 24 KVAVVGGKTVLK----KSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-GKTLDTAKAVAD 98 (349)
T ss_pred eEEEEEChHHHH----HHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHHHH
Confidence 566666554432 34566677676533 2222212 3344555555555556899999998 888888877654
Q ss_pred CCCCCCCcEEEecC--CCc
Q psy16024 138 MKLDPAPSVGIIPL--GTG 154 (316)
Q Consensus 138 ~~~~~~~~lgiiP~--GTg 154 (316)
. ...|+..||. |||
T Consensus 99 ~---~~~p~i~VPTtagtg 114 (349)
T cd08550 99 R---LDKPIVIVPTIASTC 114 (349)
T ss_pred H---cCCCEEEeCCccccC
Confidence 2 2478999997 666
No 79
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=77.17 E-value=8.9 Score=35.70 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=50.0
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce--EEE-cccCC-hHHHHHHHHhCCC--CCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVD-LADKS-PEEALQWVSLMPS--SGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~-~~t~~-~~~~~~~~~~~~~--~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+..+... ....++++.+.|.... +++ +.... .+...+.++.+.+ .+.|.||++|| |++.++.-.+.
T Consensus 25 r~lvVtd~~~~---~~g~~~~v~~~L~~~~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGG-GSviD~aK~ia 100 (355)
T TIGR03405 25 RVVVVTFPEAR---ALGLARRLEALLGGRLAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGG-GSVIDTAKVLA 100 (355)
T ss_pred eEEEEECcchh---hcchHHHHHHHhccCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHH
Confidence 56666654332 1235566777775433 232 22211 2333333333322 23799999998 77777765531
Q ss_pred c---CC----------------CCCCCcEEEecC--CCcchhhhh
Q psy16024 137 N---MK----------------LDPAPSVGIIPL--GTGNDLSRV 160 (316)
Q Consensus 137 ~---~~----------------~~~~~~lgiiP~--GTgNd~Ar~ 160 (316)
- .+ ..+.+|+..||. |||-...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~ 145 (355)
T TIGR03405 101 VGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145 (355)
T ss_pred HHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCe
Confidence 1 11 013478999997 777555443
No 80
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=76.82 E-value=7.5 Score=36.54 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=50.2
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc----eEEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL----QVVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~----~v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+..+..-. ...++++.+.|+.. .+++ +... .-+...+.++.+.+.+.|.||++|| |++.++.-++.
T Consensus 31 r~lvvt~~~~~~---~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~aKaia 106 (379)
T TIGR02638 31 KALVVTDKDLIK---FGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDTAKAIG 106 (379)
T ss_pred EEEEEcCcchhh---ccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHHH
Confidence 566666543221 12456666666543 2232 1111 1244445555544455799999999 67777664431
Q ss_pred ---cCC--------------CCCCCcEEEecC--CCcchhhhh
Q psy16024 137 ---NMK--------------LDPAPSVGIIPL--GTGNDLSRV 160 (316)
Q Consensus 137 ---~~~--------------~~~~~~lgiiP~--GTgNd~Ar~ 160 (316)
..+ ....+|+..||. |||=-..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~ 149 (379)
T TIGR02638 107 IISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTIN 149 (379)
T ss_pred HHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCE
Confidence 110 113478999998 776544443
No 81
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=75.57 E-value=7.5 Score=34.34 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=39.6
Q ss_pred HHHHHhhcCCc--eEEEcc----cCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCc
Q psy16024 81 LSTFRRLLNPL--QVVDLA----DKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTG 154 (316)
Q Consensus 81 ~~~~~~~l~~~--~v~~~~----t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTg 154 (316)
-+++++.|+.. ++..+. .....+..++..++...+.|.||.+|| ||++++.--.... ...|+..+|.=-.
T Consensus 35 g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGg-G~i~D~~K~~A~~---~~~p~isVPTa~S 110 (250)
T PF13685_consen 35 GEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGG-GTIIDIAKYAAFE---LGIPFISVPTAAS 110 (250)
T ss_dssp HHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEES-HHHHHHHHHHHHH---HT--EEEEES--S
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCC-cHHHHHHHHHHHh---cCCCEEEeccccc
Confidence 34566666543 332211 223344556666665456889999988 9999998776543 2578888998555
Q ss_pred ch
Q psy16024 155 ND 156 (316)
Q Consensus 155 Nd 156 (316)
||
T Consensus 111 ~D 112 (250)
T PF13685_consen 111 HD 112 (250)
T ss_dssp SG
T ss_pred cc
Confidence 54
No 82
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=75.05 E-value=10 Score=35.20 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=52.7
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceE---E-EcccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHc
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQV---V-DLADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHN 137 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v---~-~~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~ 137 (316)
+++|+.-+.+.+ ...+++.+.|+..++ + .+... ...+..+.++.+.+.+.|.||++|| |++.++.-.+.-
T Consensus 24 r~livt~~~~~~----~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ia~ 98 (351)
T cd08170 24 RALIIADEFVLD----LVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAVAD 98 (351)
T ss_pred eEEEEECHHHHH----HHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHHHH
Confidence 555555332221 356677777765422 2 22222 2344555555555556899999999 788888776643
Q ss_pred CCCCCCCcEEEecC--CCcchhhh
Q psy16024 138 MKLDPAPSVGIIPL--GTGNDLSR 159 (316)
Q Consensus 138 ~~~~~~~~lgiiP~--GTgNd~Ar 159 (316)
. ..+|+..||. |||=-...
T Consensus 99 ~---~~~P~iaIPTTagTgse~t~ 119 (351)
T cd08170 99 Y---LGAPVVIVPTIASTDAPTSA 119 (351)
T ss_pred H---cCCCEEEeCCccccCccccc
Confidence 2 1478999997 66644333
No 83
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=74.96 E-value=4.3 Score=37.61 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCCCceEEEEEcCcchHHHHHHH---HHcCCCCCCCcEEEecCCCcchhh
Q psy16024 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNT---IHNMKLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~---l~~~~~~~~~~lgiiP~GTgNd~A 158 (316)
.-.++++.+.+.+-+.++++|||||+..+..- +.+. ...+++--||.=--||+.
T Consensus 80 ~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~--~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 80 GRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSK--YQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhc--CCCccEEEeeecccCCCc
Confidence 33455666666668999999999999765432 2222 235889999977789986
No 84
>PRK15138 aldehyde reductase; Provisional
Probab=74.42 E-value=9.8 Score=35.92 Aligned_cols=94 Identities=21% Similarity=0.228 Sum_probs=49.9
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceE--EE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH--
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQV--VD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH-- 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v--~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~-- 136 (316)
+++|+.-+.+- +....++++...|....+ ++ +... ..+...+.++.+.+.+.|.||++|| |++-++.-.+.
T Consensus 31 ~~livt~~~~~--~~~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~ia~~ 107 (387)
T PRK15138 31 RVLITYGGGSV--KKTGVLDQVLDALKGMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGG-GSVLDGTKFIAAA 107 (387)
T ss_pred eEEEECCCchH--HhcCcHHHHHHHhcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHHHHHH
Confidence 56665543332 112345677777764433 32 2111 2234445555544456899999999 55555544431
Q ss_pred -cC---------------CCCCCCcEEEecC--CCcchhhh
Q psy16024 137 -NM---------------KLDPAPSVGIIPL--GTGNDLSR 159 (316)
Q Consensus 137 -~~---------------~~~~~~~lgiiP~--GTgNd~Ar 159 (316)
.. ...+.+|+..||. |||-....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~ 148 (387)
T PRK15138 108 ANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNA 148 (387)
T ss_pred HhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCC
Confidence 11 0112468999997 77765444
No 85
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=73.96 E-value=10 Score=35.47 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC---C----------------CCCCCcEEEecC--CCcchh
Q psy16024 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM---K----------------LDPAPSVGIIPL--GTGNDL 157 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~---~----------------~~~~~~lgiiP~--GTgNd~ 157 (316)
...+.++.+.+.+.|.||++|| |++.++.-.+... + ....+|+..||. |||=-.
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGG-Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~ 139 (367)
T cd08182 65 DLAAGIRLLREFGPDAVLAVGG-GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEV 139 (367)
T ss_pred HHHHHHHHHHhcCcCEEEEeCC-cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhh
Confidence 3445555554456799999998 7777776554221 0 113578999998 555433
No 86
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=73.95 E-value=7.2 Score=36.67 Aligned_cols=93 Identities=20% Similarity=0.202 Sum_probs=50.8
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc--eE--EE-cccCC-hHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL--QV--VD-LADKS-PEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v--~~-~~t~~-~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+.-+.+.... ..++++++.|+.. ++ ++ +.... .....+.++.+...+.|.||.+|| |++.++.-.+.
T Consensus 30 r~livt~~~~~~~~--~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ia 106 (382)
T cd08187 30 KVLLVYGGGSIKKN--GLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDSAKAIA 106 (382)
T ss_pred EEEEEeCCcHHHhc--CcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHHHH
Confidence 66666555443222 2456677777543 22 32 11121 233344444444445799999999 77777776542
Q ss_pred cC---------------CCCCCCcEEEecC--CCcchhh
Q psy16024 137 NM---------------KLDPAPSVGIIPL--GTGNDLS 158 (316)
Q Consensus 137 ~~---------------~~~~~~~lgiiP~--GTgNd~A 158 (316)
-. .....+|+-.||. |||=-..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t 145 (382)
T cd08187 107 AGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMN 145 (382)
T ss_pred hHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccC
Confidence 21 0023578999997 6764333
No 87
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=73.88 E-value=7.4 Score=36.39 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=49.2
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc--e--EEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL--Q--VVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~--v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+..+..-. ...++++.+.|+.. . +++ +... ..+...+.++.+...+.|.||++|| |++.++.-.+.
T Consensus 26 ~~liv~~~~~~~---~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~aK~ia 101 (370)
T cd08192 26 RPLIVTDPGLAA---LGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLAKAVA 101 (370)
T ss_pred eEEEEcCcchhh---CccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHH
Confidence 566665543321 12456677777643 2 232 2111 2233445555555556899999998 77777775542
Q ss_pred cC---C----------------CCCCCcEEEecC--CCcc
Q psy16024 137 NM---K----------------LDPAPSVGIIPL--GTGN 155 (316)
Q Consensus 137 ~~---~----------------~~~~~~lgiiP~--GTgN 155 (316)
-. + ..+.+|+..||. |||=
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgs 141 (370)
T cd08192 102 LMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGS 141 (370)
T ss_pred HHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhh
Confidence 21 0 012478999998 5553
No 88
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=73.47 E-value=6.2 Score=36.60 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=48.7
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCC-ce--EEEcc---c-CChHHHHHHH---HhCCCCCceEEEEEcCcchHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNP-LQ--VVDLA---D-KSPEEALQWV---SLMPSSGQTLILAAGGDGTAAWIL 132 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~-~~--v~~~~---t-~~~~~~~~~~---~~~~~~~~~~iv~~GGDGTl~~v~ 132 (316)
+++|+..+.... ...+++.+.|+. .. ++.+. . .+-+...+++ ++....+.|.||++|| |++.++.
T Consensus 25 k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~D~a 99 (344)
T cd08169 25 QYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GATGDVA 99 (344)
T ss_pred eEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHHHHH
Confidence 566666543322 245566666643 22 22221 1 1223334443 3333334789999987 8888888
Q ss_pred HHHHcCCCCCCCcEEEecC--CCcchh
Q psy16024 133 NTIHNMKLDPAPSVGIIPL--GTGNDL 157 (316)
Q Consensus 133 n~l~~~~~~~~~~lgiiP~--GTgNd~ 157 (316)
-.+...- ...+|+-.||. ++++|-
T Consensus 100 k~vA~~~-~rgip~i~VPTTlla~~ds 125 (344)
T cd08169 100 GFVASTL-FRGIAFIRVPTTLLAQSDS 125 (344)
T ss_pred HHHHHHh-ccCCcEEEecCCccccccc
Confidence 7664321 12578999997 555553
No 89
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=73.42 E-value=9.4 Score=35.08 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=46.5
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc---eEEEcc---cCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL---QVVDLA---DKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~---~v~~~~---t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++||..+.. ++++.+.|+.. .+..+. ....+.+.+.+++.. +.|.||++|| |++.++.-.+.
T Consensus 27 r~livtd~~~--------~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~d~iIaiGG-Gsv~D~aK~vA 95 (331)
T cd08174 27 RVAVVSGPGV--------GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIP--NVDAVVGIGG-GKVIDVAKYAA 95 (331)
T ss_pred ceEEEECCcH--------HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhcc--CCCEEEEeCC-cHHHHHHHHHH
Confidence 6777776654 33444444322 222221 123344445555544 3799999998 89999987765
Q ss_pred cCCCCCCCcEEEecCCCcc
Q psy16024 137 NMKLDPAPSVGIIPLGTGN 155 (316)
Q Consensus 137 ~~~~~~~~~lgiiP~GTgN 155 (316)
.. ..+|+..||.=.++
T Consensus 96 ~~---~~~p~i~vPTt~~t 111 (331)
T cd08174 96 FL---RGIPLSVPTTNLND 111 (331)
T ss_pred hh---cCCCEEEecCcccc
Confidence 43 35789999973333
No 90
>PLN02884 6-phosphofructokinase
Probab=73.18 E-value=9.1 Score=36.40 Aligned_cols=54 Identities=30% Similarity=0.339 Sum_probs=37.8
Q ss_pred HHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC--CCCCCCcEEEecCCCcchhh
Q psy16024 104 ALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM--KLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 104 ~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~--~~~~~~~lgiiP~GTgNd~A 158 (316)
..++++.+.+.+.+.++++|||||+.-+.. |.+. .....+++--||.==-||+.
T Consensus 132 ~~~i~~~L~~~~Id~LivIGGdgS~~~a~~-L~~~~~~~g~~i~vIGIPkTIDNDi~ 187 (411)
T PLN02884 132 TSDIVDSIEARGINMLFVLGGNGTHAGANA-IHNECRKRKMKVSVVGVPKTIDNDIL 187 (411)
T ss_pred HHHHHHHHHHcCCCEEEEECCchHHHHHHH-HHHHHHHcCCCceEEeccccccCCCc
Confidence 445566666667899999999999976543 2220 01234788889998889986
No 91
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=73.17 E-value=8.8 Score=35.98 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=50.1
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+..+.+-.. ...++++.+.|+..+ +++ +... ..+...+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 25 r~livt~~~~~~~--~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~ia 101 (375)
T cd08179 25 KAFIVTGGGSMKK--FGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKAMW 101 (375)
T ss_pred eEEEEeCchHHHh--CChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHHH
Confidence 5666654433221 224566777775432 232 1112 2233445555555555799999999 66666665542
Q ss_pred ---cCC---------------CCCCCcEEEecC--CCcchhh
Q psy16024 137 ---NMK---------------LDPAPSVGIIPL--GTGNDLS 158 (316)
Q Consensus 137 ---~~~---------------~~~~~~lgiiP~--GTgNd~A 158 (316)
..+ ....+|+..||. |||--..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t 143 (375)
T cd08179 102 IFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVT 143 (375)
T ss_pred HHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhC
Confidence 110 012468999997 7765444
No 92
>PRK14072 6-phosphofructokinase; Provisional
Probab=73.17 E-value=6.2 Score=37.62 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC--CCCCCCcEEEecCCCcchhhh
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM--KLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~--~~~~~~~lgiiP~GTgNd~Ar 159 (316)
+.-.++++.+.+.+-|.+|++|||||+.-+.. |.+. ....++++--||-==-||+.-
T Consensus 90 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~-L~e~~~~~g~~i~vIgIPkTIDNDl~g 148 (416)
T PRK14072 90 AEYERLLEVFKAHDIGYFFYNGGNDSMDTALK-VSQLAKKMGYPIRCIGIPKTIDNDLPG 148 (416)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChHHHHHHHH-HHHHHHHhCCCceEEEeeecccCCCCC
Confidence 34445556666666899999999999976543 3221 012347888899877899983
No 93
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=72.98 E-value=11 Score=35.43 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=51.4
Q ss_pred hHHHHHhhcCCce----EEEc-ccCCh-HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH---cCC-----------
Q psy16024 80 ILSTFRRLLNPLQ----VVDL-ADKSP-EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH---NMK----------- 139 (316)
Q Consensus 80 ~~~~~~~~l~~~~----v~~~-~t~~~-~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~---~~~----------- 139 (316)
..+++.+.|+..+ +|+- ..+.+ ....+-++.+.+.+.|.||++|| |+..++.-++. ..+
T Consensus 45 ~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D~AK~i~~~~~~~~~~~~~~~i~~ 123 (377)
T COG1454 45 LLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVIDAAKAIALLAENPGSVLDYEGIGK 123 (377)
T ss_pred hHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHHHHHhhCCchhhhhccccc
Confidence 5667777776544 4432 22222 23334444555556899999999 77777766542 211
Q ss_pred -CCCCCcEEEecC--CCcchhhhhhCCC
Q psy16024 140 -LDPAPSVGIIPL--GTGNDLSRVLGWG 164 (316)
Q Consensus 140 -~~~~~~lgiiP~--GTgNd~Ar~lg~~ 164 (316)
..+.+|+-.||. |||-...+.--+.
T Consensus 124 ~~~~~~plIaIPTTaGTGSEvT~~aVit 151 (377)
T COG1454 124 VKKPKAPLIAIPTTAGTGSEVTPFAVIT 151 (377)
T ss_pred ccCCCCCEEEecCCCcchhhhcCeEEEE
Confidence 123378899997 8988888777664
No 94
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=72.93 E-value=9.5 Score=31.05 Aligned_cols=70 Identities=17% Similarity=0.326 Sum_probs=45.7
Q ss_pred cchHHHHHhhcCCceE-EE---c-ccCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 78 SHILSTFRRLLNPLQV-VD---L-ADKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~v-~~---~-~t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
....++....|+.+++ ++ . ....|++..++++++.+++.++ |.++|+.+-|--++.++-.. |+--+|.
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~------PVIgvP~ 84 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPL------PVIGVPV 84 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCC------CEEEecC
Confidence 3456666666665543 22 1 2356888889998877665665 56679999999999887543 4444565
Q ss_pred CC
Q psy16024 152 GT 153 (316)
Q Consensus 152 GT 153 (316)
-+
T Consensus 85 ~~ 86 (156)
T TIGR01162 85 PS 86 (156)
T ss_pred Cc
Confidence 44
No 95
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=72.28 E-value=6 Score=37.45 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHH---HHcCCCCCCCcEEEecCCCcchhh
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNT---IHNMKLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~---l~~~~~~~~~~lgiiP~GTgNd~A 158 (316)
+...++++.+...+.|.++++|||||..-+..- +.+. ...+++--||-==-||+.
T Consensus 99 ~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~--g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 99 NPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAEN--GYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHh--CCCceEEEeeeeeeCCCC
Confidence 344456666666678999999999999766432 1212 225789999998889985
No 96
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=72.26 E-value=7.7 Score=36.37 Aligned_cols=92 Identities=24% Similarity=0.271 Sum_probs=49.1
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+..+..-+ ...++++.+.|+..+ +++ +... ..+...+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 28 ~~lvvt~~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GS~~D~aK~ia 103 (374)
T cd08189 28 KVLIVTDKGLVK---LGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG-GSVIDCAKAIA 103 (374)
T ss_pred eEEEEeCcchhh---cccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHHH
Confidence 566665543321 124566777775432 232 1111 1233444444444455799999998 67777665432
Q ss_pred ---cCCC-------------CCCCcEEEecC--CCcchhh
Q psy16024 137 ---NMKL-------------DPAPSVGIIPL--GTGNDLS 158 (316)
Q Consensus 137 ---~~~~-------------~~~~~lgiiP~--GTgNd~A 158 (316)
..+. .+.+|+..||. |||=-..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t 143 (374)
T cd08189 104 ARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVT 143 (374)
T ss_pred HHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccC
Confidence 2110 12368999997 6664443
No 97
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=71.91 E-value=9.1 Score=36.07 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=51.0
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+..+...+ ...++++.+.|+..+ +|+ +... ...+..+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 24 ~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ia 99 (386)
T cd08191 24 RALIVTDERMAG---TPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLAKIAG 99 (386)
T ss_pred eEEEEECcchhh---cchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHH
Confidence 567776544332 235666777775432 232 1111 1222333444444455799999998 78877776652
Q ss_pred c---CC------------CCCCCcEEEecC--CCcchhhh
Q psy16024 137 N---MK------------LDPAPSVGIIPL--GTGNDLSR 159 (316)
Q Consensus 137 ~---~~------------~~~~~~lgiiP~--GTgNd~Ar 159 (316)
- .+ ..+.+|+..||. |||=...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~ 139 (386)
T cd08191 100 LLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTP 139 (386)
T ss_pred HHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCC
Confidence 1 10 012578999997 66654444
No 98
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=71.55 E-value=5.9 Score=36.69 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=47.0
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc----eEEEcc----cCChHHHHHHHHhCCC---CCceEEEEEcCcchHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL----QVVDLA----DKSPEEALQWVSLMPS---SGQTLILAAGGDGTAAWI 131 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~----~v~~~~----t~~~~~~~~~~~~~~~---~~~~~iv~~GGDGTl~~v 131 (316)
+++|+..+..-. ...+++.+.|+.. .++.+. ...-+...++++.+.+ .+.|.||++|| |++.++
T Consensus 26 ~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~D~ 100 (345)
T cd08195 26 KILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-GVVGDL 100 (345)
T ss_pred eEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hHHHhH
Confidence 577777655432 2456677766543 222222 1122344444443332 33589999988 888888
Q ss_pred HHHHHcCCCCCCCcEEEecC
Q psy16024 132 LNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 132 ~n~l~~~~~~~~~~lgiiP~ 151 (316)
.-.+.... ...+|+..||.
T Consensus 101 ak~vA~~~-~rgip~i~VPT 119 (345)
T cd08195 101 AGFVAATY-MRGIDFIQIPT 119 (345)
T ss_pred HHHHHHHH-hcCCCeEEcch
Confidence 86664211 12578899996
No 99
>PRK03202 6-phosphofructokinase; Provisional
Probab=70.13 E-value=6.9 Score=35.92 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhh
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar 159 (316)
+...++++.+.+.+-|.++++|||||+..+. .|.+. .+++--||.=--||+.-
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~-~L~e~----~i~vigiPkTIDNDl~g 132 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAK-RLTEH----GIPVIGLPGTIDNDIAG 132 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHH-HHHhc----CCcEEEecccccCCCCC
Confidence 4455666666666789999999999998755 45543 57888899988899873
No 100
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=68.19 E-value=9.1 Score=35.10 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhh
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar 159 (316)
++-.+.++.+...+.|.++++|||||+..+. .|.+. .+++--||.=--||+.-
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~-~L~e~----~i~vigiPkTIDNDi~g 131 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAM-RLTEH----GFPCVGLPGTIDNDIPG 131 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHH-HHHHc----CCCEEEecccccCCCCC
Confidence 3445566666666789999999999998765 45543 47899999988999873
No 101
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=68.15 E-value=9.1 Score=35.68 Aligned_cols=88 Identities=18% Similarity=0.051 Sum_probs=49.1
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EEEccc----CChHHHHHHHH---hCCCCCceEEEEEcCcchHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVDLAD----KSPEEALQWVS---LMPSSGQTLILAAGGDGTAAWI 131 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~~~t----~~~~~~~~~~~---~~~~~~~~~iv~~GGDGTl~~v 131 (316)
+++|+..+.... ...+++.+.|+..+ ++.+.. ..-+...++++ +....+.|.||++|| |++.++
T Consensus 33 ~~livtd~~~~~----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D~ 107 (358)
T PRK00002 33 KVAIVTDETVAP----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-GVIGDL 107 (358)
T ss_pred eEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cHHHHH
Confidence 567777654422 25566777775432 221111 12233334443 333233589999988 888898
Q ss_pred HHHHHcCCCCCCCcEEEecC--CCcch
Q psy16024 132 LNTIHNMKLDPAPSVGIIPL--GTGND 156 (316)
Q Consensus 132 ~n~l~~~~~~~~~~lgiiP~--GTgNd 156 (316)
.-.+.... ...+|+..||. ++.+|
T Consensus 108 aK~iA~~~-~~gip~i~IPTT~~s~~d 133 (358)
T PRK00002 108 AGFAAATY-MRGIRFIQVPTTLLAQVD 133 (358)
T ss_pred HHHHHHHh-cCCCCEEEcCchhhhccc
Confidence 87764211 12578999997 44444
No 102
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=67.43 E-value=13 Score=34.20 Aligned_cols=81 Identities=10% Similarity=-0.017 Sum_probs=47.7
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EEEcc-cC--ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVDLA-DK--SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~~~-t~--~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l 135 (316)
+++||..+..-.. ..+++.+.|+..+ ++... .. .-....+.++.+.+ +.|.||++|| |++.++.-.+
T Consensus 26 kvlivtd~~~~~~----~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG-Gsv~D~aK~i 99 (332)
T cd08549 26 KIMIVCGNNTYKV----AGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS-GTIIDLVKFV 99 (332)
T ss_pred cEEEEECCcHHHH----HHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC-cHHHHHHHHH
Confidence 6777776544321 2255666665422 22211 11 23444455555544 5899999999 8999988776
Q ss_pred HcCCCCCCCcEEEecCC
Q psy16024 136 HNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 136 ~~~~~~~~~~lgiiP~G 152 (316)
.-. ..+|+..||.=
T Consensus 100 A~~---~gip~I~VPTT 113 (332)
T cd08549 100 SFK---VGKPFISVPTA 113 (332)
T ss_pred HHH---cCCCEEEeCCC
Confidence 422 25789999973
No 103
>PRK14071 6-phosphofructokinase; Provisional
Probab=67.25 E-value=11 Score=35.20 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=39.6
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhh---hhCCC
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSR---VLGWG 164 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar---~lg~~ 164 (316)
.++++.+.+.+.|.++++|||||+.- +..|.+. ..+++--||.=--||+.- ++|..
T Consensus 97 ~~~~~~l~~~~Id~Li~IGGdgS~~~-a~~L~~~---~~i~vIgiPkTIDNDl~~td~t~Gf~ 155 (360)
T PRK14071 97 QEIIDGYHSLGLDALIGIGGDGSLAI-LRRLAQQ---GGINLVGIPKTIDNDVGATEVSIGFD 155 (360)
T ss_pred HHHHHHHHHcCCCEEEEECChhHHHH-HHHHHHh---cCCcEEEecccccCCCcCcccCcChh
Confidence 45555666666899999999999864 4455442 257888899888899853 45543
No 104
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=67.11 E-value=16 Score=34.56 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=38.0
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce--E--EE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--V--VD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v--~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l 135 (316)
+++||.-+... ....++++.+.|+..+ + ++ +... ......+.++.+.+.+.|.||++|| |++.++.-.+
T Consensus 23 k~liVtd~~~~---~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~i 97 (398)
T cd08178 23 RAFIVTDRFMV---KLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG-GSPMDAAKIM 97 (398)
T ss_pred eEEEEcChhHH---hCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHH
Confidence 56666543221 1225667777775432 2 32 2211 2234445555555556899999999 6666666554
No 105
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=66.67 E-value=29 Score=32.41 Aligned_cols=77 Identities=14% Similarity=0.095 Sum_probs=53.3
Q ss_pred HHHHHhhcCCce--EE--EcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcch
Q psy16024 81 LSTFRRLLNPLQ--VV--DLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGND 156 (316)
Q Consensus 81 ~~~~~~~l~~~~--v~--~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd 156 (316)
-+++.+.|+..+ ++ .....+.++..++.+.+...+.|.||.+|| |++.++.-.+... ...|+..+|.=..+|
T Consensus 46 ~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGG-Gk~iD~aK~~A~~---~~~pfIsvPT~AS~D 121 (360)
T COG0371 46 GEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGG-GKTIDTAKAAAYR---LGLPFISVPTIASTD 121 (360)
T ss_pred HHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcccCCCEEEEecC-cHHHHHHHHHHHH---cCCCEEEecCccccc
Confidence 345666676553 22 223345677778888777566899999999 8888888777554 368999999977777
Q ss_pred hhhhh
Q psy16024 157 LSRVL 161 (316)
Q Consensus 157 ~Ar~l 161 (316)
=..+-
T Consensus 122 a~~Sp 126 (360)
T COG0371 122 AITSP 126 (360)
T ss_pred cccCC
Confidence 55444
No 106
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=65.90 E-value=18 Score=33.34 Aligned_cols=81 Identities=17% Similarity=0.120 Sum_probs=47.9
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce--EEE-cccCC-hHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVD-LADKS-PEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~-~~t~~-~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
+++|+..+..- ....+++.+.|+... +++ +.... .+...+.++.+.+.+.|.||++|| |++.++.-.+.-.
T Consensus 25 ~~livt~~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~iD~aK~ia~~ 99 (337)
T cd08177 25 RALVLTTPSLA----TKLAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGG-GSTIDLAKAIALR 99 (337)
T ss_pred eEEEEcChHHH----HHHHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHHH
Confidence 55666543221 125667777776543 332 12222 233444555554456899999998 8999988776432
Q ss_pred CCCCCCcEEEecC
Q psy16024 139 KLDPAPSVGIIPL 151 (316)
Q Consensus 139 ~~~~~~~lgiiP~ 151 (316)
. .+|+..||.
T Consensus 100 ~---~~p~i~IPT 109 (337)
T cd08177 100 T---GLPIIAIPT 109 (337)
T ss_pred h---cCCEEEEcC
Confidence 1 468888885
No 107
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=63.91 E-value=3.8 Score=36.89 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=36.5
Q ss_pred HHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhh
Q psy16024 106 QWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 106 ~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar 159 (316)
+.++.+.+.+.|.++++|||||+..+ +.|.+.. .+++-.||.=--||+.-
T Consensus 83 ~~~~~l~~~~Id~Li~IGG~gs~~~a-~~L~~~~---~i~vigiPkTIDNDi~g 132 (282)
T PF00365_consen 83 KIVENLKKLGIDALIVIGGDGSMKGA-HKLSEEF---GIPVIGIPKTIDNDIPG 132 (282)
T ss_dssp HHHHHHHHTTESEEEEEESHHHHHHH-HHHHHHH---HSEEEEEEEETTSSCTT
T ss_pred hHHHHHHHhCCCEEEEecCCCHHHHH-HHHHhcC---ceEEEEEeccccCCcCC
Confidence 44455555567999999999998775 4555221 37899999988899875
No 108
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=63.36 E-value=12 Score=34.51 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=46.6
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--E--EEccc----CChHHHHHHHH---hCCCCCceEEEEEcCcchHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--V--VDLAD----KSPEEALQWVS---LMPSSGQTLILAAGGDGTAAW 130 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v--~~~~t----~~~~~~~~~~~---~~~~~~~~~iv~~GGDGTl~~ 130 (316)
.+++|+..+..-. ...+++.+.|+..+ + +.+.. ..-+...++++ +....+.|.||++|| |++.+
T Consensus 21 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D 95 (344)
T TIGR01357 21 SKLVIITDETVAD----LYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVVGD 95 (344)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHHHH
Confidence 3677777654432 24566777775432 1 22211 12233444433 333333589999988 88888
Q ss_pred HHHHHHcCCCCCCCcEEEecC
Q psy16024 131 ILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 131 v~n~l~~~~~~~~~~lgiiP~ 151 (316)
+.-.+.... ...+|+..||.
T Consensus 96 ~aK~iA~~~-~~~~p~i~VPT 115 (344)
T TIGR01357 96 LAGFVAATY-MRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHH-ccCCCEEEecC
Confidence 887664211 12578999997
No 109
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=63.06 E-value=23 Score=33.27 Aligned_cols=79 Identities=25% Similarity=0.364 Sum_probs=43.1
Q ss_pred hHHHHHhhcCCc----eEEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH---HcCC-----------
Q psy16024 80 ILSTFRRLLNPL----QVVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTI---HNMK----------- 139 (316)
Q Consensus 80 ~~~~~~~~l~~~----~v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l---~~~~----------- 139 (316)
.++++.+.|... .+++ +... ......+.++.+...+.|.||++|| |++-++.-.+ ...+
T Consensus 44 ~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GsviD~AK~ia~~~~~~~~~~~~~~~~~ 122 (377)
T cd08188 44 WVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGG-GSPIDCAKGIGIVASNGGHILDFEGVDK 122 (377)
T ss_pred cHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCccc
Confidence 455666666542 2232 2111 2233444444444455799999998 6777776432 2111
Q ss_pred -CCCCCcEEEecC--CCcchhhh
Q psy16024 140 -LDPAPSVGIIPL--GTGNDLSR 159 (316)
Q Consensus 140 -~~~~~~lgiiP~--GTgNd~Ar 159 (316)
..+.+|+..||. |||--.++
T Consensus 123 ~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 123 ITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred ccCCCCCEEEECCCCccccccCC
Confidence 012468999998 77644443
No 110
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=62.94 E-value=18 Score=33.72 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=45.5
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCc--eEE--Ecc----cCChHHHHHHHHhCCC----CCceEEEEEcCcchHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPL--QVV--DLA----DKSPEEALQWVSLMPS----SGQTLILAAGGDGTAA 129 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v~--~~~----t~~~~~~~~~~~~~~~----~~~~~iv~~GGDGTl~ 129 (316)
.+++||..+..-. ...+++.+.|+.. .+. .+. ..+.+...++++.+.+ +++|.||++|| |++.
T Consensus 27 ~~~lvVtd~~v~~----~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG-G~v~ 101 (354)
T cd08199 27 GRRFVVVDQNVDK----LYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG-GVLT 101 (354)
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-cHHH
Confidence 4677777664432 1335566666432 221 111 1123344444433332 22389998887 8888
Q ss_pred HHHHHHHcCCCCCCCcEEEecC
Q psy16024 130 WILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 130 ~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
++.-.+.... ...+|+-.+|.
T Consensus 102 D~ak~~A~~~-~rg~p~i~VPT 122 (354)
T cd08199 102 DVAGLAASLY-RRGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHh-cCCCCEEEEcC
Confidence 8887775311 12578888888
No 111
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=60.98 E-value=1.8 Score=34.57 Aligned_cols=15 Identities=40% Similarity=0.937 Sum_probs=11.8
Q ss_pred EEEEcCcchHHHHHH
Q psy16024 119 ILAAGGDGTAAWILN 133 (316)
Q Consensus 119 iv~~GGDGTl~~v~n 133 (316)
-=-.|||||.||+-.
T Consensus 128 YRgdGGDGT~hW~Yd 142 (180)
T PLN00180 128 YRGDGGDGTGHWVYE 142 (180)
T ss_pred hcccCCCCceeeEee
Confidence 345699999999864
No 112
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=59.67 E-value=15 Score=37.90 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC-C-CCCCCcEEEecCCCcchhh
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM-K-LDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~-~-~~~~~~lgiiP~GTgNd~A 158 (316)
++..++++.+.+.+.|.++++|||||...+..-.... . ....+++-.||.=--||+.
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~ 523 (745)
T TIGR02478 465 KDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVP 523 (745)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCC
Confidence 3455666666666789999999999997655332111 0 1135889999999999996
No 113
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=59.34 E-value=17 Score=31.51 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=46.6
Q ss_pred HHHHhhcCC---ceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC-CCCCCCcEEEecCCCcc
Q psy16024 82 STFRRLLNP---LQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM-KLDPAPSVGIIPLGTGN 155 (316)
Q Consensus 82 ~~~~~~l~~---~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~-~~~~~~~lgiiP~GTgN 155 (316)
+.+...+.. .+++.+.....+.+.++++.+...+.|.|++-|-||.-.+-+..+.+. .....+|+-+.|....+
T Consensus 5 ~~l~~~~~~~~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~ 82 (240)
T COG1646 5 KYLLEKLDWRGKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSG 82 (240)
T ss_pred HHHHHHhhhccceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhc
Confidence 344455542 244444333224556777777777899999999999876555554443 11346899999987644
No 114
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=58.35 E-value=21 Score=33.30 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=52.7
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCC--c--eEEE-ccc-CChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH-
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNP--L--QVVD-LAD-KSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTI- 135 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~--~--~v~~-~~t-~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l- 135 (316)
+++||..+ +-... ..++++...|++ . .++. +.. ....+..+.++.+...+.|.||++|| |++-++.-.+
T Consensus 23 r~lvVt~~-~~~~~--~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~va 98 (366)
T PF00465_consen 23 RVLVVTDP-SLSKS--GLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGG-GSVMDAAKAVA 98 (366)
T ss_dssp EEEEEEEH-HHHHH--THHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEES-HHHHHHHHHHH
T ss_pred CEEEEECc-hHHhC--ccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCC-CCcCcHHHHHH
Confidence 77888876 32222 256777777743 2 2333 222 22344555555555556899999999 5555555443
Q ss_pred --HcCC-------------CCCCCcEEEecC--CCcchhhhhh
Q psy16024 136 --HNMK-------------LDPAPSVGIIPL--GTGNDLSRVL 161 (316)
Q Consensus 136 --~~~~-------------~~~~~~lgiiP~--GTgNd~Ar~l 161 (316)
...+ ..+.+|+..||. |||=.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~a 141 (366)
T PF00465_consen 99 LLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYA 141 (366)
T ss_dssp HHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEE
T ss_pred hhccCCCcHHHHHhhccccccCCCcEEEeeCCccccccccccc
Confidence 3321 112379999998 6654444433
No 115
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=57.27 E-value=18 Score=33.76 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=52.8
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--E-EE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--V-VD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v-~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
.+++||..+..- ....+++.+.|+..+ + ++ +..+ ......+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 30 ~~~livtd~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 104 (366)
T PRK09423 30 KRALVIADEFVL----GIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAVA 104 (366)
T ss_pred CEEEEEEChhHH----HHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHHH
Confidence 366777654432 125567777776532 2 22 2222 2334445555555556899999999 88888887764
Q ss_pred cCCCCCCCcEEEecC--CCcchhh
Q psy16024 137 NMKLDPAPSVGIIPL--GTGNDLS 158 (316)
Q Consensus 137 ~~~~~~~~~lgiiP~--GTgNd~A 158 (316)
-. ..+|+..||. |||=-..
T Consensus 105 ~~---~~~p~i~IPTtagtgSe~t 125 (366)
T PRK09423 105 DY---LGVPVVIVPTIASTDAPTS 125 (366)
T ss_pred HH---cCCCEEEeCCccccCcccc
Confidence 32 2478999997 5554333
No 116
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=56.69 E-value=18 Score=28.66 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=27.7
Q ss_pred HHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 104 ALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 104 ~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
+.++.+.+.....|.|+++.||+-+..+++.+.+.+
T Consensus 88 ~~d~~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~G 123 (149)
T cd06167 88 AIDALELAYKRRIDTIVLVSGDSDFVPLVERLRELG 123 (149)
T ss_pred HHHHHHHhhhcCCCEEEEEECCccHHHHHHHHHHcC
Confidence 334444444445899999999999999999998873
No 117
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=56.42 E-value=22 Score=32.99 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=36.2
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhh
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~A 158 (316)
...++.+.+.+-|.+|++|||||..-.. -|.+.. ..++-=+|.==-||++
T Consensus 84 ~~~~~~l~~~gId~LvvIGGDgS~~gA~-~Lae~~---~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 84 KVAAENLKKLGIDALVVIGGDGSYTGAA-LLAEEG---GIPVVGVPKTIDNDIS 133 (347)
T ss_pred HHHHHHHHHcCCCEEEEECCCChHHHHH-HHHHhc---CCcEEecCCCccCCCc
Confidence 3555666666789999999999987654 343331 2677778887889988
No 118
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=56.18 E-value=7 Score=30.68 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=11.2
Q ss_pred ceEEEEEcCcchHH
Q psy16024 116 QTLILAAGGDGTAA 129 (316)
Q Consensus 116 ~~~iv~~GGDGTl~ 129 (316)
..+||+||||||-+
T Consensus 85 gQRlIvsGGegtss 98 (160)
T PF12219_consen 85 GQRLIVSGGEGTSS 98 (160)
T ss_dssp G-EEEEESSSSSSG
T ss_pred ccEEEEeCCCCccc
Confidence 46899999999964
No 119
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=55.33 E-value=26 Score=32.45 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=47.7
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EEEccc----CChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVDLAD----KSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNT 134 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~~~t----~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~ 134 (316)
+++||..+.+- ....+++.+.|+..+ ++.... ...+...+.++.+.+ +.|.||++|| |++.++.-.
T Consensus 25 ~~livtd~~~~----~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGG-Gs~~D~aK~ 98 (348)
T cd08175 25 KALIVADENTY----AAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGS-GTINDITKY 98 (348)
T ss_pred cEEEEECCcHH----HHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECC-cHHHHHHHH
Confidence 46666544322 112356666665432 232221 223444555555544 5899999999 888888877
Q ss_pred HHcCCCCCCCcEEEecCC
Q psy16024 135 IHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 135 l~~~~~~~~~~lgiiP~G 152 (316)
+... ..+|+..||.=
T Consensus 99 vA~~---~~~p~i~IPTT 113 (348)
T cd08175 99 VSYK---TGIPYISVPTA 113 (348)
T ss_pred HHHh---cCCCEEEecCc
Confidence 7543 25789999973
No 120
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=54.52 E-value=20 Score=35.87 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=35.0
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHH--H-HHcCCCCCCCcEEEecCCCcchhh
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILN--T-IHNMKLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n--~-l~~~~~~~~~~lgiiP~GTgNd~A 158 (316)
.++.+.+.+.+-|.+|++|||||...+.- . +.+. ...+++--+|-==-||+.
T Consensus 163 ~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~--~~~i~VIGIPKTIDNDL~ 217 (610)
T PLN03028 163 NAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEA--KCKTKVVGVPVTLNGDLK 217 (610)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHc--CCCceEEEeceeeeCCCC
Confidence 33444444445789999999999876642 2 2222 235788888987789997
No 121
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=54.42 E-value=46 Score=31.19 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=43.9
Q ss_pred hHHHHHhhcCCce----EEEcccC--ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC---C-----------
Q psy16024 80 ILSTFRRLLNPLQ----VVDLADK--SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM---K----------- 139 (316)
Q Consensus 80 ~~~~~~~~l~~~~----v~~~~t~--~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~---~----------- 139 (316)
.++++.+.|++.+ +++-... ..+...+.++.+.+.+.|.||++|| |++.++.-.+.-. +
T Consensus 42 ~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-Gs~iD~aK~ia~~~~~~~~~~~~~~~~~ 120 (376)
T cd08193 42 LIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG-GSSMDVAKLVAVLAGSDQPLADMYGVDL 120 (376)
T ss_pred cHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCCCc
Confidence 4566777675432 2321111 2344555666665556899999998 7777777654221 0
Q ss_pred -CCCCCcEEEecC--CCcc
Q psy16024 140 -LDPAPSVGIIPL--GTGN 155 (316)
Q Consensus 140 -~~~~~~lgiiP~--GTgN 155 (316)
....+|+..||. |||-
T Consensus 121 ~~~~~~p~i~IPTTagtgS 139 (376)
T cd08193 121 VAGPRLPLILVPTTAGTGS 139 (376)
T ss_pred cCCCCCCEEEeCCCCcchH
Confidence 013578999997 5553
No 122
>PRK10586 putative oxidoreductase; Provisional
Probab=54.06 E-value=38 Score=31.67 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHHhhcCCce--EEEcc-cCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcc
Q psy16024 82 STFRRLLNPLQ--VVDLA-DKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGN 155 (316)
Q Consensus 82 ~~~~~~l~~~~--v~~~~-t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgN 155 (316)
+.+.+.|+... +..+. .....+..++++... .+.|.||.+|| |++.++.-.+... ..+|+..||.=-++
T Consensus 51 ~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGG-Gs~iD~aK~~a~~---~~~p~i~vPT~a~t 122 (362)
T PRK10586 51 PYLPPAFELPGAKHILFRGHCSESDVAQLAAASG-DDRQVVIGVGG-GALLDTAKALARR---LGLPFVAIPTIAAT 122 (362)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhc-cCCCEEEEecC-cHHHHHHHHHHhh---cCCCEEEEeCCccc
Confidence 44455555432 22111 223445556665554 35799999998 7888888776543 25799999984443
No 123
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=53.95 E-value=29 Score=32.85 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=49.9
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce----EEE-c-------ccCCh-HHHHHH---HHhCCCCCceEEEEEcCc
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVD-L-------ADKSP-EEALQW---VSLMPSSGQTLILAAGGD 125 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~-~-------~t~~~-~~~~~~---~~~~~~~~~~~iv~~GGD 125 (316)
.+++||..+.--+.. ..+.+++.+.|+..+ +++ . ..... +...++ +++....+.|.||++||
T Consensus 43 ~r~liVtD~~v~~~~-~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGG- 120 (389)
T PRK06203 43 KKVLVVIDSGVLRAH-PDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGG- 120 (389)
T ss_pred CeEEEEECchHHHhh-hhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCC-
Confidence 467788765443211 124567777775322 111 1 11221 223333 33433334569999998
Q ss_pred chHHHHHHHHHcCCCCCCCcEEEecC--CCcchh
Q psy16024 126 GTAAWILNTIHNMKLDPAPSVGIIPL--GTGNDL 157 (316)
Q Consensus 126 GTl~~v~n~l~~~~~~~~~~lgiiP~--GTgNd~ 157 (316)
|++.++.-.+.... ...+|+-.||. |+..|-
T Consensus 121 Gsv~D~ak~iA~~~-~rgip~I~IPTTlla~vda 153 (389)
T PRK06203 121 GAVLDMVGYAAATA-HRGVRLIRIPTTVLAQNDS 153 (389)
T ss_pred cHHHHHHHHHHHHh-cCCCCEEEEcCCCccccCC
Confidence 88888876654321 22578999996 344443
No 124
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=53.73 E-value=20 Score=35.44 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=35.9
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHHH---HHcCCCCCCCcEEEecCCCcchhhh
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILNT---IHNMKLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~---l~~~~~~~~~~lgiiP~GTgNd~Ar 159 (316)
.+.++.+.+.+-|.+|++|||||...+..- +.+. ..++++--||-==-||+..
T Consensus 151 ~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~--g~~i~VIGIPkTIDNDl~~ 206 (539)
T TIGR02477 151 AKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKH--GLKTQVIGVPKTIDGDLKN 206 (539)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhc--CCCceEEEEeeeecCCCCC
Confidence 344444555567999999999998765422 2222 2357888889877899975
No 125
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=51.56 E-value=25 Score=37.22 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=49.2
Q ss_pred cCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCC-CCCCCCCCCCHHH
Q psy16024 98 DKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGW-GKLYDRDTCSPFQ 176 (316)
Q Consensus 98 t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~-~~~~~~~~~~~~~ 176 (316)
-..|+|-.++++.+++. ..+|++=||| +|++- +|... -+|| .+|+|.|.|+...= =. .+.++..
T Consensus 620 r~sPe~K~~iV~~Lq~~--G~vVamtGDG-vNDaP-ALk~A------DVGI-Amg~gtdvAkeaADiVL----ldd~f~~ 684 (903)
T PRK15122 620 KLTPLQKSRVLKALQAN--GHTVGFLGDG-INDAP-ALRDA------DVGI-SVDSGADIAKESADIIL----LEKSLMV 684 (903)
T ss_pred EeCHHHHHHHHHHHHhC--CCEEEEECCC-chhHH-HHHhC------CEEE-EeCcccHHHHHhcCEEE----ecCChHH
Confidence 44689988999988875 5678888999 78876 55544 3563 46799999997631 00 0125555
Q ss_pred HHHHHHccCC
Q psy16024 177 ILDNLTRSKV 186 (316)
Q Consensus 177 ~l~~l~~~~~ 186 (316)
....+..|+.
T Consensus 685 Iv~ai~~gR~ 694 (903)
T PRK15122 685 LEEGVIKGRE 694 (903)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 126
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=51.48 E-value=26 Score=36.11 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC-C--CCCCCcEEEecCCCcchhh
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM-K--LDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~-~--~~~~~~lgiiP~GTgNd~A 158 (316)
++..++++.+.+.+.|.++++|||||..-+.. |.+. . ....+|+-.||.=--||+.
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~-L~~~~~~y~~~~i~vVgIPkTIDNDv~ 523 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQ-LREAREQYEEFCIPMVLIPATVSNNVP 523 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHH-HHHHHhhCCCCCccEEEecccccCCCC
Confidence 44556666677777899999999999986653 3321 1 1235899999999999986
No 127
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=50.64 E-value=28 Score=34.51 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=35.8
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC--CCCCCCcEEEecCCCcchhh
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM--KLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~--~~~~~~~lgiiP~GTgNd~A 158 (316)
.+.++.+.+.+-|.+|++|||||...+.. |.+. .....+++--+|.==-||+.
T Consensus 154 ~~i~~~l~~~~Id~LviIGGd~S~~~A~~-Lae~~~~~~~~i~VIGIPkTIDNDl~ 208 (555)
T PRK07085 154 EACLETVKKLKLDGLVIIGGDDSNTNAAI-LAEYFAKHGCKTQVIGVPKTIDGDLK 208 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHHHHhCCCccEEEEeeeecCCCC
Confidence 34444444456799999999999876643 2221 01235788889988889996
No 128
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=50.59 E-value=26 Score=34.70 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=35.6
Q ss_pred HHHHhCCCCCceEEEEEcCcchHHHHHHH---HHcCCCCCCCcEEEecCCCcchhhhh
Q psy16024 106 QWVSLMPSSGQTLILAAGGDGTAAWILNT---IHNMKLDPAPSVGIIPLGTGNDLSRV 160 (316)
Q Consensus 106 ~~~~~~~~~~~~~iv~~GGDGTl~~v~n~---l~~~~~~~~~~lgiiP~GTgNd~Ar~ 160 (316)
++.+.+.+.+-+.+|++|||||...+..- +.+. ..++++--+|-==-||+...
T Consensus 157 ~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~--g~~i~VIGVPKTIDNDl~~t 212 (550)
T cd00765 157 QAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSK--GLKTRVIGVPKTIDGDLKNK 212 (550)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhc--CCCceEEEEeeeecCCCCCC
Confidence 34444444557899999999998755422 2222 23578888898778999863
No 129
>PTZ00287 6-phosphofructokinase; Provisional
Probab=50.40 E-value=17 Score=39.77 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCCCceEEEEEcCcchHHHHHHH---HHcCCCCCCCcEEEecCCCcchhhh-----hhCCC
Q psy16024 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNT---IHNMKLDPAPSVGIIPLGTGNDLSR-----VLGWG 164 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~---l~~~~~~~~~~lgiiP~GTgNd~Ar-----~lg~~ 164 (316)
...+.++.+...+-|.+|++|||||+..+.-- +.+.+ .++.+--||.==-||+.. ++|+.
T Consensus 916 ~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~g--i~i~VIGVPkTIDNDL~~~~tD~TiGFD 983 (1419)
T PTZ00287 916 NRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKK--IPTSVVGIPLTGSNNLIHELIETCVGFD 983 (1419)
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcC--CCccEEEeCceeeCCCCCCCCcCCCCHH
Confidence 33444445555567999999999999765421 22221 233477788877899976 56654
No 130
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=50.01 E-value=24 Score=36.37 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=36.3
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHH----------HHHcC--------CCCCCCcEEEecCCCcchhh
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILN----------TIHNM--------KLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n----------~l~~~--------~~~~~~~lgiiP~GTgNd~A 158 (316)
.+.++.+.+.+.|.++++|||||+.-+.. .|.+. .....+++--||.==-||+.
T Consensus 84 ~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~ 155 (745)
T TIGR02478 84 LKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMC 155 (745)
T ss_pred HHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCC
Confidence 45556666667899999999999876532 22211 11235788889965589997
No 131
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=49.54 E-value=1e+02 Score=26.98 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCceEEEEEcCcchHHHHHH----HHHcCCCCCCCcEEEecC-CCcchhhhhhCCCC
Q psy16024 114 SGQTLILAAGGDGTAAWILN----TIHNMKLDPAPSVGIIPL-GTGNDLSRVLGWGK 165 (316)
Q Consensus 114 ~~~~~iv~~GGDGTl~~v~n----~l~~~~~~~~~~lgiiP~-GTgNd~Ar~lg~~~ 165 (316)
++.+++++..||=++..... .|.+. ....++=++|+ -+....|-.+|++.
T Consensus 91 ~g~~v~~l~~GDp~~ys~~~~l~~~l~~~--~~~~~veivPGIss~~a~aa~~g~pL 145 (238)
T PRK05948 91 QGEDVAFACEGDVSFYSTFTYLAQTLQEL--YPQVAIQTIPGVCSPLAAAAALGIPL 145 (238)
T ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHHhc--CCCCCEEEECChhHHHHHHHHhCCCe
Confidence 45689999999966655444 44432 13468889998 55677777777765
No 132
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=48.46 E-value=55 Score=30.98 Aligned_cols=82 Identities=22% Similarity=0.272 Sum_probs=46.2
Q ss_pred chHHHHHhhcCCce----EEEcccCCh--HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH---HcCC----------
Q psy16024 79 HILSTFRRLLNPLQ----VVDLADKSP--EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTI---HNMK---------- 139 (316)
Q Consensus 79 ~~~~~~~~~l~~~~----v~~~~t~~~--~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l---~~~~---------- 139 (316)
..++++.+.|++.+ +++-.+..| ....+.++.+.+.+.|.||++|| |++-++.-++ ...+
T Consensus 64 g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGG-GS~iD~AKaia~~~~~~~~~~~~~~~~ 142 (395)
T PRK15454 64 GMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGG-GSVLDAAKAVALLVTNPDSTLAEMSET 142 (395)
T ss_pred ccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHHHHHHHHhCCCccHHHHhcc
Confidence 35677777776543 232112222 33445555555556899999999 5555555432 1111
Q ss_pred --CCCCCcEEEecC--CCcchhhhhh
Q psy16024 140 --LDPAPSVGIIPL--GTGNDLSRVL 161 (316)
Q Consensus 140 --~~~~~~lgiiP~--GTgNd~Ar~l 161 (316)
..+.+|+..||. |||-...+.-
T Consensus 143 ~~~~~~~P~iaIPTtaGTGSE~t~~a 168 (395)
T PRK15454 143 SVLQPRLPLIAIPTTAGTGSETTNVT 168 (395)
T ss_pred cccCCCCCEEEECCCCcchhhhCCeE
Confidence 013468999997 7766555433
No 133
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=46.71 E-value=91 Score=28.95 Aligned_cols=46 Identities=28% Similarity=0.331 Sum_probs=28.5
Q ss_pred CceEEEEEcCcchHHHHHHHH---HcCC------------CCCCCcEEEecC--CCcchhhhhh
Q psy16024 115 GQTLILAAGGDGTAAWILNTI---HNMK------------LDPAPSVGIIPL--GTGNDLSRVL 161 (316)
Q Consensus 115 ~~~~iv~~GGDGTl~~v~n~l---~~~~------------~~~~~~lgiiP~--GTgNd~Ar~l 161 (316)
+.|.||++|| |++-++.-++ ...+ ..+.+|+..||. |||--..+.-
T Consensus 81 ~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~a 143 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRTA 143 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCcE
Confidence 5899999998 6666665443 2111 012367999996 7776554433
No 134
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=46.61 E-value=34 Score=29.68 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=25.5
Q ss_pred eEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCc
Q psy16024 117 TLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTG 154 (316)
Q Consensus 117 ~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTg 154 (316)
-.|+++|-||++-.|+++|.+. |+--+|.-+|
T Consensus 175 ~lIVvAGMEGaLPsvvagLvD~------PVIavPTsVG 206 (254)
T COG1691 175 VLIVVAGMEGALPSVVAGLVDV------PVIAVPTSVG 206 (254)
T ss_pred eEEEEcccccchHHHHHhccCC------CeEecccccc
Confidence 4688899999999999999864 6666776543
No 135
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=43.54 E-value=35 Score=35.20 Aligned_cols=55 Identities=18% Similarity=0.077 Sum_probs=37.6
Q ss_pred HHHHHHhCCCCCceEEEEEcCcchHHHHH----------HHHHcCC--------CCCCCcEEEecCCCcchhh
Q psy16024 104 ALQWVSLMPSSGQTLILAAGGDGTAAWIL----------NTIHNMK--------LDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 104 ~~~~~~~~~~~~~~~iv~~GGDGTl~~v~----------n~l~~~~--------~~~~~~lgiiP~GTgNd~A 158 (316)
-.+.++.+...+.|.+|++|||||+.-+. ..|.+.. ....+++--||.==-||+.
T Consensus 86 ~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 86 RLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 34555666666789999999999997654 2222221 1135688889988899997
No 136
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=43.24 E-value=34 Score=37.23 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=34.3
Q ss_pred HHHhCCCCCceEEEEEcCcchHHHHHH---HHHcCCCCCCCcEEEecCCCcchhhh
Q psy16024 107 WVSLMPSSGQTLILAAGGDGTAAWILN---TIHNMKLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 107 ~~~~~~~~~~~~iv~~GGDGTl~~v~n---~l~~~~~~~~~~lgiiP~GTgNd~Ar 159 (316)
..+.+.+.+-|.+|++|||||...+.. .+.+. ..++++--||-==-||+..
T Consensus 188 ~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~--g~~I~VIGIPKTIDNDL~g 241 (1328)
T PTZ00468 188 SLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRN--SSSTVVVGCPKTIDGDLKN 241 (1328)
T ss_pred HHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhc--CCCeeEEEEeEEEcCCCCC
Confidence 333344445789999999999975542 22222 2357888899877999974
No 137
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=43.24 E-value=31 Score=28.13 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=31.0
Q ss_pred hHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCC
Q psy16024 101 PEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGT 153 (316)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GT 153 (316)
.+.|.++.+.+.+.+. .|+.-|+.|--..+..+..+.. ...+|++|.+-
T Consensus 17 ~~~A~~lg~~La~~g~-~lv~Gg~~GlM~a~a~ga~~~g---g~viGVlp~~l 65 (159)
T TIGR00725 17 YEIAYRLGKELAKKGH-ILINGGRTGVMEAVSKGAREAG---GLVVGILPDED 65 (159)
T ss_pred HHHHHHHHHHHHHCCC-EEEcCCchhHHHHHHHHHHHCC---CeEEEECChhh
Confidence 3456777787777654 3444344565555666766553 46899999764
No 138
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=42.26 E-value=55 Score=34.46 Aligned_cols=70 Identities=14% Similarity=0.072 Sum_probs=39.3
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcC--Cce--E--EE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLN--PLQ--V--VD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILN 133 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~--~~~--v--~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n 133 (316)
.+++||..+..-. ...++++.+.|+ ... + ++ +... ......+.++.+.+.+.|.||++|| |++.++.-
T Consensus 481 ~~~lvVtd~~~~~---~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~AK 556 (862)
T PRK13805 481 KRAFIVTDRFMVE---LGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGG-GSPMDAAK 556 (862)
T ss_pred CEEEEEECcchhh---cchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHH
Confidence 3667776543321 225667777776 332 2 22 1111 2234455555555556799999998 67777765
Q ss_pred HH
Q psy16024 134 TI 135 (316)
Q Consensus 134 ~l 135 (316)
.+
T Consensus 557 ~i 558 (862)
T PRK13805 557 IM 558 (862)
T ss_pred HH
Confidence 54
No 139
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=42.25 E-value=19 Score=34.14 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=28.9
Q ss_pred ceEEEEEcCcchHHHHHHHHHcCC----CCCCCcEEEecCCC
Q psy16024 116 QTLILAAGGDGTAAWILNTIHNMK----LDPAPSVGIIPLGT 153 (316)
Q Consensus 116 ~~~iv~~GGDGTl~~v~n~l~~~~----~~~~~~lgiiP~GT 153 (316)
.|.+|+.|||-|+..+-.-+.... ..++..+++|-.-.
T Consensus 169 ~D~vv~wGgd~ti~~ir~~~~~~~~~i~fg~k~S~avi~~~~ 210 (399)
T PF05893_consen 169 ADAVVAWGGDETIRAIRQPLPPGARLIEFGPKYSFAVIDAEA 210 (399)
T ss_pred CCEEEEeCCHHHHHHHHHHcCCCCcEeeeCCceEEEEEcCch
Confidence 699999999999999998443321 24677888887754
No 140
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.24 E-value=50 Score=27.07 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=27.4
Q ss_pred EEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhh
Q psy16024 118 LILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 118 ~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar 159 (316)
.-+.++|+ |..+++..+... ...++-+-+|=+|| ||+.+
T Consensus 44 ~n~g~~G~-t~~~~~~~l~~~-~~~~pd~Vii~~G~-ND~~~ 82 (191)
T cd01836 44 RLFAKTGA-TSADLLRQLAPL-PETRFDVAVISIGV-NDVTH 82 (191)
T ss_pred EEEecCCc-CHHHHHHHHHhc-ccCCCCEEEEEecc-cCcCC
Confidence 45677888 556777766542 23467888999998 99875
No 141
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=40.83 E-value=1e+02 Score=26.86 Aligned_cols=96 Identities=13% Similarity=0.192 Sum_probs=49.3
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCC--ceEEEcccCChHHHHHHHHhCCCCC--ceEEEEEcCcchHHHHHHHHHc
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNP--LQVVDLADKSPEEALQWVSLMPSSG--QTLILAAGGDGTAAWILNTIHN 137 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~--~~v~~~~t~~~~~~~~~~~~~~~~~--~~~iv~~GGDGTl~~v~n~l~~ 137 (316)
|++..|+|+|.|.|+.-... .+...|.. ..|..+.+....+...+.+.....+ .+.+.|.+.| ++..+-..+..
T Consensus 1 M~vItf~s~KGGaGKTT~~~-~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~~l~~~~e~ 78 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAM-ALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELTILEDAYEA 78 (231)
T ss_pred CCeEEEecCCCCCcHHHHHH-HHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc-chhhHHHHHHH
Confidence 46788999999999864332 23333332 3455555665566667776654432 2334444433 23222222222
Q ss_pred CCCCCCCcEEEecC-CCcchhhhh
Q psy16024 138 MKLDPAPSVGIIPL-GTGNDLSRV 160 (316)
Q Consensus 138 ~~~~~~~~lgiiP~-GTgNd~Ar~ 160 (316)
.. .....+.++=+ |++|-++..
T Consensus 79 a~-~~~~d~VlvDleG~as~~~~~ 101 (231)
T PF07015_consen 79 AE-ASGFDFVLVDLEGGASELNDY 101 (231)
T ss_pred HH-hcCCCEEEEeCCCCCchhHHH
Confidence 11 11245566665 777766543
No 142
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=39.95 E-value=33 Score=26.75 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=22.3
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
.++.+.+....+|.++++.||+-+-.+++.+...+
T Consensus 85 ~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~g 119 (146)
T PF01936_consen 85 VDILELAYENPPDTIVLVSGDSDFAPLVRKLRERG 119 (146)
T ss_dssp HHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH-
T ss_pred HHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHcC
Confidence 34555554444699999999999999999998763
No 143
>KOG1250|consensus
Probab=39.88 E-value=93 Score=29.47 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=41.8
Q ss_pred HHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCC-cEEEecCCCcchhhhhhCCCC
Q psy16024 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAP-SVGIIPLGTGNDLSRVLGWGK 165 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~-~lgiiP~GTgNd~Ar~lg~~~ 165 (316)
-..++.+++....--.++.+||-|-+.-++.++.... +.+ -||+-+. +.+.|.++|..+.
T Consensus 204 ig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~--p~vkIIGVEt~-~a~~f~~sl~~g~ 264 (457)
T KOG1250|consen 204 IGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVG--PHVKIIGVETE-GAHSFNASLKAGK 264 (457)
T ss_pred HHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhC--CCCceEEEeec-CcHHHHHHHhcCC
Confidence 3557777777652346788999999999999998874 233 4555544 4578888776543
No 144
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=39.19 E-value=45 Score=29.93 Aligned_cols=67 Identities=21% Similarity=0.134 Sum_probs=36.3
Q ss_pred cccCCCCCCCCcchHHHHHhhcCCce--EEEcc----------cCChHHHHHHHHhCCCCCceEEE-EEcCcchHHHHHH
Q psy16024 67 RGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLA----------DKSPEEALQWVSLMPSSGQTLIL-AAGGDGTAAWILN 133 (316)
Q Consensus 67 ivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~----------t~~~~~~~~~~~~~~~~~~~~iv-~~GGDGTl~~v~n 133 (316)
|+.|.|+-... +..++..+.|+..+ +..-. .....-|.++.+.+.+...+.|+ +.||+|+.. ++.
T Consensus 3 iiapSs~~~~~-~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~r-lL~ 80 (282)
T cd07025 3 IVAPSSPIDEE-ERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGANR-LLP 80 (282)
T ss_pred EEeCCCCCCcH-HHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHH-hhh
Confidence 56777765332 45666667776543 21100 11123355666666655566654 559999864 454
Q ss_pred HH
Q psy16024 134 TI 135 (316)
Q Consensus 134 ~l 135 (316)
.|
T Consensus 81 ~l 82 (282)
T cd07025 81 YL 82 (282)
T ss_pred hC
Confidence 43
No 145
>PRK00536 speE spermidine synthase; Provisional
Probab=39.10 E-value=21 Score=31.76 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=13.9
Q ss_pred ceEEEEEcCc-chHHHHHH
Q psy16024 116 QTLILAAGGD-GTAAWILN 133 (316)
Q Consensus 116 ~~~iv~~GGD-GTl~~v~n 133 (316)
..++|+-||| ||+.||+-
T Consensus 74 k~VLIiGGGDGg~~REvLk 92 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFK 92 (262)
T ss_pred CeEEEEcCCchHHHHHHHC
Confidence 3678888999 67888774
No 146
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=37.84 E-value=42 Score=26.87 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=17.6
Q ss_pred chHHHHHhhcCC--ceEEEccc----CChHHHHHHHHhC
Q psy16024 79 HILSTFRRLLNP--LQVVDLAD----KSPEEALQWVSLM 111 (316)
Q Consensus 79 ~~~~~~~~~l~~--~~v~~~~t----~~~~~~~~~~~~~ 111 (316)
.+.+.+.+.|+. ++|.++-+ .+|.-+...++.+
T Consensus 13 ~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V 51 (141)
T TIGR01118 13 RLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEV 51 (141)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHH
Confidence 455666777765 45666543 3454444444443
No 147
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=35.77 E-value=70 Score=31.86 Aligned_cols=57 Identities=14% Similarity=-0.001 Sum_probs=36.2
Q ss_pred HHHHHHHhCCCCCceEEEEEcCcchHHHHHHH---HHcCCCCCCCcEEEecCCCcchhhhhh
Q psy16024 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNT---IHNMKLDPAPSVGIIPLGTGNDLSRVL 161 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~---l~~~~~~~~~~lgiiP~GTgNd~Ar~l 161 (316)
+-.+..+.+...+-|.+|++|||||...+..- +.+. ..++++--+|-==-||+....
T Consensus 178 ~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~--g~~i~VIGVPKTIDNDL~~td 237 (568)
T PLN02251 178 QFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAK--NLKTRVIGCPKTIDGDLKSKE 237 (568)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhc--CCCeeEEEeCceEeCCCCCCc
Confidence 33344444444457999999999998765432 2222 234677778876688886643
No 148
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=34.67 E-value=45 Score=26.22 Aligned_cols=27 Identities=15% Similarity=-0.031 Sum_probs=17.9
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL 91 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~ 91 (316)
+++|++=...| .++++.+.+.+.|...
T Consensus 2 ~i~IiY~S~tG--nTe~iA~~ia~~l~~~ 28 (140)
T TIGR01754 2 RILLAYLSLSG--NTEEVAFMIQDYLQKD 28 (140)
T ss_pred eEEEEEECCCC--hHHHHHHHHHHHHhhC
Confidence 56777755444 5567778887777653
No 149
>PRK09273 hypothetical protein; Provisional
Probab=34.37 E-value=49 Score=28.34 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=33.6
Q ss_pred cccCCCCCCCCcchHHHHHhhcCC--ceEEEccc--------CChHHHHHHHHhCCCCCceEEEEEcCcc
Q psy16024 67 RGNRKSGNGDGSHILSTFRRLLNP--LQVVDLAD--------KSPEEALQWVSLMPSSGQTLILAAGGDG 126 (316)
Q Consensus 67 ivNp~sG~~~~~~~~~~~~~~l~~--~~v~~~~t--------~~~~~~~~~~~~~~~~~~~~iv~~GGDG 126 (316)
++|..|...+-.-+.+.+.+.|++ ++|+++-+ .+|.-+...+..+.+...|..|+.-|-|
T Consensus 5 li~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~g~~d~GIliCGTG 74 (211)
T PRK09273 5 LINENSQAAKNAIIYEALKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLNSKAVDFVVTGCGTG 74 (211)
T ss_pred eecccchhhhhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCcH
Confidence 456666555545577888888865 45665432 3455566666655544445544333333
No 150
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=34.35 E-value=93 Score=25.48 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=35.4
Q ss_pred HHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEE-ecCCCcchhhhhh
Q psy16024 104 ALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGI-IPLGTGNDLSRVL 161 (316)
Q Consensus 104 ~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgi-iP~GTgNd~Ar~l 161 (316)
+.+...-+-....|.++++.|||=...+++.|.+.+ .. .+++ .+..|..+|-++.
T Consensus 94 aIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G--~~-V~v~g~~~~ts~~L~~ac 149 (160)
T TIGR00288 94 AVEAMELIYNPNIDAVALVTRDADFLPVINKAKENG--KE-TIVIGAEPGFSTALQNSA 149 (160)
T ss_pred HHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCC--CE-EEEEeCCCCChHHHHHhc
Confidence 344444443345899999999999999999998874 12 2222 2455665555443
No 151
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=34.12 E-value=47 Score=27.66 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=31.4
Q ss_pred hHHHHHHHHhCCCCCceEEEEEc-C-cchHHHHHHHHHcCCCCCCCcEEEecCC
Q psy16024 101 PEEALQWVSLMPSSGQTLILAAG-G-DGTAAWILNTIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~iv~~G-G-DGTl~~v~n~l~~~~~~~~~~lgiiP~G 152 (316)
...|.++.+.+.+. ...++.| | .|....+..+..+.. ...+|++|-.
T Consensus 18 ~~~A~~lG~~la~~--g~~lV~GGg~~GlM~a~a~ga~~~g---G~viGi~p~~ 66 (178)
T TIGR00730 18 KELAAELGAYLAGQ--GWGLVYGGGRVGLMGAIADAAMENG---GTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHHHC--CCEEEECCChHhHHHHHHHHHHhcC---CeEEEecchh
Confidence 35677777777765 3444444 4 677777777876653 4679999864
No 152
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=34.07 E-value=54 Score=25.71 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=22.1
Q ss_pred eEEEEEcCcchHHHHHHHHHcC--CCCCCCcEEEec
Q psy16024 117 TLILAAGGDGTAAWILNTIHNM--KLDPAPSVGIIP 150 (316)
Q Consensus 117 ~~iv~~GGDGTl~~v~n~l~~~--~~~~~~~lgiiP 150 (316)
-.|+.-||=||+-|+...+.-. ....+.|+.++-
T Consensus 56 a~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 56 AFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp EEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred EEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 3567779999999999987532 222344777765
No 153
>PRK08284 precorrin 6A synthase; Provisional
Probab=33.97 E-value=80 Score=27.93 Aligned_cols=52 Identities=19% Similarity=0.087 Sum_probs=35.9
Q ss_pred CCCceEEEEEcCcchHH----HHHHHHHcCCCCCCCcEEEecC-CCcchhhhhhCCCC
Q psy16024 113 SSGQTLILAAGGDGTAA----WILNTIHNMKLDPAPSVGIIPL-GTGNDLSRVLGWGK 165 (316)
Q Consensus 113 ~~~~~~iv~~GGDGTl~----~v~n~l~~~~~~~~~~lgiiP~-GTgNd~Ar~lg~~~ 165 (316)
.++.++++++.||-++. .++..+.... ...+.+-+||+ -+.+..|-.+|++.
T Consensus 101 ~~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~-~~~i~vevVPGISS~~aaaA~lg~pl 157 (253)
T PRK08284 101 PDGGTGAFLVWGDPSLYDSTLRILERVRARG-RVAFDYEVIPGITSVQALAARHRIPL 157 (253)
T ss_pred hCCCcEEEEeCCCcchhhHHHHHHHHHHhhc-cCCCcEEEECChhHHHHHHHHcCCCh
Confidence 34568999999998887 4555554320 12468999998 66677777788754
No 154
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=33.81 E-value=1e+02 Score=28.97 Aligned_cols=87 Identities=11% Similarity=0.034 Sum_probs=47.8
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EE----Ecc----cCCh-HHHHHHHH---hCCCCCceEEEEEcCcc
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VV----DLA----DKSP-EEALQWVS---LMPSSGQTLILAAGGDG 126 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~----~~~----t~~~-~~~~~~~~---~~~~~~~~~iv~~GGDG 126 (316)
+++||.++.-.. ......+.+.+.|+..+ ++ .+. +.+. ....++.+ +....+.+.||++|| |
T Consensus 32 r~lvVtD~~v~~-~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGG-G 109 (369)
T cd08198 32 KVLVVIDSGVAQ-ANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGG-G 109 (369)
T ss_pred eEEEEECcchHH-hhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECC-h
Confidence 677887765443 11124566666664322 11 111 1221 22333443 333333569999998 9
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEecCC
Q psy16024 127 TAAWILNTIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 127 Tl~~v~n~l~~~~~~~~~~lgiiP~G 152 (316)
++.++.-.+... ....+|+-.||.=
T Consensus 110 ~v~D~ag~vA~~-~~rGip~I~IPTT 134 (369)
T cd08198 110 AVLDAVGYAAAT-AHRGVRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHH-hcCCCCEEEECCC
Confidence 999998776543 1235888889963
No 155
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=32.32 E-value=86 Score=29.79 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=25.9
Q ss_pred CceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCC
Q psy16024 115 GQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 115 ~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~G 152 (316)
..|.+|.-||=||+.+.+.. .+|+-++|.+
T Consensus 300 ~ad~vI~hGG~gtt~eaL~~--------gvP~vv~P~~ 329 (406)
T COG1819 300 RADAVIHHGGAGTTSEALYA--------GVPLVVIPDG 329 (406)
T ss_pred hcCEEEecCCcchHHHHHHc--------CCCEEEecCC
Confidence 37999999999999998753 5899999998
No 156
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=32.05 E-value=98 Score=26.76 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=34.6
Q ss_pred HHHHHhCCCCCceEEEEEcCcch---HHHHHHHHHcCCCCCCCcEEEecCCCcch
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGT---AAWILNTIHNMKLDPAPSVGIIPLGTGND 156 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGT---l~~v~n~l~~~~~~~~~~lgiiP~GTgNd 156 (316)
.++.+.+...+.|.|++.|=||. +.+++..+.+.. . .+|+-+.|....+-
T Consensus 15 ~~~~~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~~-~-~~Pvilfp~~~~~i 67 (219)
T cd02812 15 EEIAKLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIR-R-PVPVILFPSNPEAV 67 (219)
T ss_pred HHHHHHHHhcCCCEEEECCccchhhhHHHHHHHHHHhc-C-CCCEEEeCCCcccc
Confidence 34555444466899999999975 666777776543 1 48999999876543
No 157
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=30.76 E-value=58 Score=28.73 Aligned_cols=60 Identities=12% Similarity=0.014 Sum_probs=34.6
Q ss_pred HHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCC-cchhhhhhCCCC
Q psy16024 106 QWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGT-GNDLSRVLGWGK 165 (316)
Q Consensus 106 ~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GT-gNd~Ar~lg~~~ 165 (316)
+...+...++.+++++++||-.+......+.+.-....+++=++|.=| ....|-.+|++-
T Consensus 71 ~~i~~~~~~g~~Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl 131 (257)
T PRK15473 71 DLMEAGVKAGKTVVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEY 131 (257)
T ss_pred HHHHHHHHCCCeEEEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCc
Confidence 333333333457888889996655444443332111246888999844 566666677654
No 158
>PLN02834 3-dehydroquinate synthase
Probab=30.70 E-value=1.2e+02 Score=29.16 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=24.4
Q ss_pred ceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCC
Q psy16024 116 QTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 116 ~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~G 152 (316)
.+.||++|| |++.++.-.+.... ...+|+..||.-
T Consensus 164 ~~~VIAiGG-Gsv~D~ak~~A~~y-~rgiplI~VPTT 198 (433)
T PLN02834 164 RCTFVALGG-GVIGDMCGFAAASY-QRGVNFVQIPTT 198 (433)
T ss_pred CcEEEEECC-hHHHHHHHHHHHHh-cCCCCEEEECCc
Confidence 458888888 88888887543211 125789999983
No 159
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=30.54 E-value=82 Score=33.39 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=48.9
Q ss_pred ccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhC-CCCCCCCCCCCHH
Q psy16024 97 ADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG-WGKLYDRDTCSPF 175 (316)
Q Consensus 97 ~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg-~~~~~~~~~~~~~ 175 (316)
.-..|+|-.++++.++++ ..+|++=||| +|++- +|... -+||= +|+|.|.|+.-. +=. -+.++.
T Consensus 619 Ar~sPe~K~~IV~~Lq~~--G~vVam~GDG-vNDaP-ALk~A------DVGIA-mg~gtdvAkeaADiVL----ldd~~~ 683 (902)
T PRK10517 619 ARLTPMHKERIVTLLKRE--GHVVGFMGDG-INDAP-ALRAA------DIGIS-VDGAVDIAREAADIIL----LEKSLM 683 (902)
T ss_pred EEcCHHHHHHHHHHHHHC--CCEEEEECCC-cchHH-HHHhC------CEEEE-eCCcCHHHHHhCCEEE----ecCChH
Confidence 345689989999988875 4678888999 78876 55544 35543 358889999764 100 012566
Q ss_pred HHHHHHHccCC
Q psy16024 176 QILDNLTRSKV 186 (316)
Q Consensus 176 ~~l~~l~~~~~ 186 (316)
.+...+..|+.
T Consensus 684 ~I~~ai~~gR~ 694 (902)
T PRK10517 684 VLEEGVIEGRR 694 (902)
T ss_pred HHHHHHHHHHH
Confidence 66666666553
No 160
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=29.86 E-value=75 Score=27.15 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHH-HHHcCCCCCCCcEEEecCC
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILN-TIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n-~l~~~~~~~~~~lgiiP~G 152 (316)
+-|.++.+++..++ .+|+.||=+-+.++++ +.... ....+|++|-.
T Consensus 34 ~~a~~lg~~la~~g--~~V~tGG~~GiMea~~~gA~~~---gg~~vGi~p~~ 80 (205)
T COG1611 34 ELARELGRELAKRG--LLVITGGGPGVMEAVARGALEA---GGLVVGILPGL 80 (205)
T ss_pred HHHHHHHHHHHhCC--cEEEeCCchhhhhHHHHHHHHc---CCeEEEecCCC
Confidence 44667777777764 6666666666666655 44433 25789999964
No 161
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=29.81 E-value=1.5e+02 Score=24.65 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCC
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGT 153 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GT 153 (316)
.-|.+.+..+.....|.|+.+.|||=+--+++.+...+ ..+-+++.++
T Consensus 97 ~la~D~~~l~~~~~~D~ivl~SgD~DF~p~v~~~~~~G----~rv~v~~~~~ 144 (181)
T COG1432 97 ELAVDAMELADKKNVDTIVLFSGDGDFIPLVEAARDKG----KRVEVAGIEP 144 (181)
T ss_pred hhHHHHHHhhcccCCCEEEEEcCCccHHHHHHHHHHcC----CEEEEEecCC
Confidence 44556666666556899999999999999999987763 3455555544
No 162
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=29.79 E-value=71 Score=34.93 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCCceEEEEEcCcchHHHHHHHHHcC----C---CCCCCcEEEecCCCcchhhh
Q psy16024 113 SSGQTLILAAGGDGTAAWILNTIHNM----K---LDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 113 ~~~~~~iv~~GGDGTl~~v~n~l~~~----~---~~~~~~lgiiP~GTgNd~Ar 159 (316)
..+-|.+|++|||||+..... |.+. . ....+++--+|.==-||+..
T Consensus 798 ~~~Id~LVvIGGDgS~t~A~~-Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~ 850 (1328)
T PTZ00468 798 FFNMRAIAIVGNSEAATFGAS-LSEQLICMSLNGMKSEIPVVFVPVCLENSISH 850 (1328)
T ss_pred HcCCCEEEEeCCchHHHHHHH-HHHHHhhhccccccCCCcEEEeCccccCCCCC
Confidence 345799999999999976543 3221 1 12358888899888999986
No 163
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=29.18 E-value=86 Score=25.16 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=24.1
Q ss_pred EEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhh
Q psy16024 120 LAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 120 v~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar 159 (316)
...+||. ..+++..+...-...++.+.+|=+|| ||+.+
T Consensus 28 ~Gi~G~~-~~~~~~~~~~~~~~~~p~~vvi~~G~-ND~~~ 65 (171)
T cd04502 28 RGFGGST-LADCLHYFDRLVLPYQPRRVVLYAGD-NDLAS 65 (171)
T ss_pred cCcccch-HHHHHHHHHhhhccCCCCEEEEEEec-CcccC
Confidence 5667774 44555554333222367899999998 99754
No 164
>PTZ00287 6-phosphofructokinase; Provisional
Probab=28.48 E-value=73 Score=35.15 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=34.6
Q ss_pred HHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC-C-CCCCCcEEEecCCCcchhh
Q psy16024 104 ALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM-K-LDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 104 ~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~-~-~~~~~~lgiiP~GTgNd~A 158 (316)
..++++.+.+.+-|.+|++|||||...+.. |.+. . ...++.+-.||.==-||+.
T Consensus 260 ~~ki~e~lkkl~Id~LViIGGddS~~~A~~-Lae~~~~~gi~i~VIGIPKTIDNDL~ 315 (1419)
T PTZ00287 260 LIAIENIVAKLKLNGLVIIGGDGSNSNAAL-ISEYFAERQIPISIIGIPKTIDGDLK 315 (1419)
T ss_pred HHHHHHHHHHcCCCEEEEECChhHHHHHHH-HHHHHHhcCCCeeEEEEeeeecCCCC
Confidence 334444445556799999999999877654 2221 0 1122345778987789998
No 165
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=28.25 E-value=77 Score=25.78 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=23.3
Q ss_pred eEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 117 TLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 117 ~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
-.|++-||=||+.|+...+.. ..|+.+++.
T Consensus 94 a~IvlpGG~GTL~E~~~a~~~-----~kpv~~l~~ 123 (159)
T TIGR00725 94 VVVSVGGGYGTAIEILGAYAL-----GGPVVVLRG 123 (159)
T ss_pred EEEEcCCchhHHHHHHHHHHc-----CCCEEEEEC
Confidence 456777999999999998874 357877773
No 166
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=28.15 E-value=1.8e+02 Score=27.04 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=42.2
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEEcc---cC-ChHHHHHHHHhCCC---CCceEEEEEcCcchHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLA---DK-SPEEALQWVSLMPS---SGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~---t~-~~~~~~~~~~~~~~---~~~~~iv~~GGDGTl~~v~n~l 135 (316)
++++|..+.-.. ...+.+.+.|....+..+. .. +-+.+.++.+.+.+ ...|.||++|| |++.++.-.+
T Consensus 21 r~lIVtD~~v~~----l~~~~l~~~L~~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~D~ak~v 95 (346)
T cd08196 21 NDVFIVDANVAE----LYRDRLDLPLDAAPVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQDVTTFV 95 (346)
T ss_pred eEEEEECccHHH----HHHHHHHHHhcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHHHHHHH
Confidence 566666654321 2455666666543333221 11 22334444443333 33488999988 8888887766
Q ss_pred HcCCCCCCCcEEEecC
Q psy16024 136 HNMKLDPAPSVGIIPL 151 (316)
Q Consensus 136 ~~~~~~~~~~lgiiP~ 151 (316)
...- ...+++-.+|.
T Consensus 96 A~~~-~rgi~~i~iPT 110 (346)
T cd08196 96 ASIY-MRGVSWSFVPT 110 (346)
T ss_pred HHHH-HcCCCeEEecc
Confidence 4210 11245555553
No 167
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=27.99 E-value=84 Score=33.41 Aligned_cols=87 Identities=23% Similarity=0.247 Sum_probs=58.7
Q ss_pred HHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhC-
Q psy16024 84 FRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG- 162 (316)
Q Consensus 84 ~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg- 162 (316)
+.+.++...|+ .--+|+|-.++++.+++. ..++++=|||. |++- +|.+. -+||==.|+|+|-||+--
T Consensus 609 l~~~~~~~~Vf--ARvsP~qK~~IV~~lq~~--g~vVamtGDGv-NDap-ALk~A------DVGIamg~~Gtdaak~Aad 676 (917)
T COG0474 609 LAELVEELSVF--ARVSPEQKARIVEALQKS--GHVVAMTGDGV-NDAP-ALKAA------DVGIAMGGEGTDAAKEAAD 676 (917)
T ss_pred HHHHhhhCcEE--EEcCHHHHHHHHHHHHhC--CCEEEEeCCCc-hhHH-HHHhc------CccEEecccHHHHHHhhcc
Confidence 44455555555 334689989999998875 78999999994 7765 45444 366655669999999874
Q ss_pred -CCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 163 -WGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 163 -~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
+-. +.+......++.+|+..
T Consensus 677 ivl~-----dd~~~~i~~av~eGR~~ 697 (917)
T COG0474 677 IVLL-----DDNFATIVLAVVEGRRV 697 (917)
T ss_pred eEee-----cCcHHHHHHHHHHhHHH
Confidence 211 12566666777777654
No 168
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=27.98 E-value=58 Score=28.26 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
...+.++.+...+.|.|++-|=||.=.+-+..+...=....+|+-+.|.
T Consensus 15 ~~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~ 63 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPS 63 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCC
Confidence 3456667777778999999999987544444332221112489999993
No 169
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=27.88 E-value=74 Score=25.44 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=11.8
Q ss_pred CcEEEecCCCcchhhhhhC
Q psy16024 144 PSVGIIPLGTGNDLSRVLG 162 (316)
Q Consensus 144 ~~lgiiP~GTgNd~Ar~lg 162 (316)
...||+=+|||..++-+.+
T Consensus 55 ~~~GIliCGtGiG~siaAN 73 (141)
T PRK12613 55 GRLGIMVDAYGAGPFMVAT 73 (141)
T ss_pred CceEEEEcCCCHhHhhhhh
Confidence 4567777777766655543
No 170
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=26.99 E-value=28 Score=32.12 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=32.2
Q ss_pred Ccccccc-ccCCCCCCC--CcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEE
Q psy16024 61 DLWKLGR-GNRKSGNGD--GSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAA 122 (316)
Q Consensus 61 ~~~~~vi-vNp~sG~~~--~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~ 122 (316)
++++.|. .||++|.+- +.+-.+.+.+.++..+-.-+...+|-.+..+........+|.|+++
T Consensus 202 ~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vvaM 266 (332)
T PRK03743 202 NPKIAVAGLNPHSGEHGLFGDEEVDEIIPAVEAAQEMGINVEGPVPADSVFHLALQGRYDAVLSL 266 (332)
T ss_pred CCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCcccCCCCchhhcccccccCCCEEEEc
Confidence 4555554 599999753 3333334444444321111112345445555555555558999865
No 171
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=26.22 E-value=1.7e+02 Score=25.97 Aligned_cols=27 Identities=22% Similarity=0.030 Sum_probs=20.9
Q ss_pred ceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 116 QTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 116 ~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
.|.+|..|| +|+.|++.. ..|.-++|.
T Consensus 242 aDl~Is~~G-~T~~E~~a~--------g~P~i~i~~ 268 (279)
T TIGR03590 242 ADLAIGAAG-STSWERCCL--------GLPSLAICL 268 (279)
T ss_pred CCEEEECCc-hHHHHHHHc--------CCCEEEEEe
Confidence 689999999 999998743 356777766
No 172
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=25.88 E-value=1.6e+02 Score=27.38 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=23.3
Q ss_pred ceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCC
Q psy16024 116 QTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 116 ~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~G 152 (316)
.+.+|..||-||+.|.+.. ..|+-++|..
T Consensus 292 ~~~~I~hgG~~t~~Eal~~--------G~P~v~~p~~ 320 (392)
T TIGR01426 292 ADAFITHGGMNSTMEALFN--------GVPMVAVPQG 320 (392)
T ss_pred CCEEEECCCchHHHHHHHh--------CCCEEecCCc
Confidence 5889999999999887743 4688888875
No 173
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=25.77 E-value=1.6e+02 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=22.4
Q ss_pred eEEEEEcCcchHHHHHHHHHcCCCC-CCCcEEEe
Q psy16024 117 TLILAAGGDGTAAWILNTIHNMKLD-PAPSVGII 149 (316)
Q Consensus 117 ~~iv~~GGDGTl~~v~n~l~~~~~~-~~~~lgii 149 (316)
-.|+.-||=||+.|+...+.-.+.. .+.|+.++
T Consensus 99 a~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~ 132 (178)
T TIGR00730 99 AFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILF 132 (178)
T ss_pred EEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3567779999999999988432211 23466666
No 174
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=25.45 E-value=1.9e+02 Score=26.97 Aligned_cols=59 Identities=20% Similarity=0.381 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCCCce-EEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCC
Q psy16024 103 EALQWVSLMPSSGQT-LILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWG 164 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~-~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~ 164 (316)
.+.|+.+++.+. .| +++.+||=|-++-|...+...... ---||+=|.|. |++.+++.-+
T Consensus 164 i~lEileq~~~~-~d~v~vpvGGGGLisGia~~~k~~~p~-~~vIGVEp~~a-~~~~~Sl~~G 223 (347)
T COG1171 164 IALEILEQLPDL-PDAVFVPVGGGGLISGIATALKALSPE-IKVIGVEPEGA-PSMYASLKAG 223 (347)
T ss_pred HHHHHHHhcccc-CCEEEEecCccHHHHHHHHHHHHhCCC-CeEEEEeeCCC-hHHHHHHHcC
Confidence 456777777653 24 467789999999999888776322 23688888886 8888888654
No 175
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=25.42 E-value=48 Score=33.01 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=33.7
Q ss_pred EEEEEcCcchHHHHHHHHHcCC-------CCCCCcEEE-ecCCCcc-hhhhhhCC
Q psy16024 118 LILAAGGDGTAAWILNTIHNMK-------LDPAPSVGI-IPLGTGN-DLSRVLGW 163 (316)
Q Consensus 118 ~iv~~GGDGTl~~v~n~l~~~~-------~~~~~~lgi-iP~GTgN-d~Ar~lg~ 163 (316)
.|-.==|||-+|..+|-+.--+ -+.+.|+|| +|.|||= .||-..|.
T Consensus 460 gVslrpgdGVIHswLNrmllpDtvgtGGDSHTRfpiGisFpAgSGlVAfAaatGv 514 (852)
T COG1049 460 GVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGV 514 (852)
T ss_pred ceecCCCCccHHHHHHhccCCcceecCCcccccccccceecCCCchhhhhHhcCc
Confidence 3444569999999999874321 134689998 8999985 68887775
No 176
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.41 E-value=1.2e+02 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=21.3
Q ss_pred HHHHHHhCCCCCceEEEEEcCcc-hHHHHHHHHHcCC
Q psy16024 104 ALQWVSLMPSSGQTLILAAGGDG-TAAWILNTIHNMK 139 (316)
Q Consensus 104 ~~~~~~~~~~~~~~~iv~~GGDG-Tl~~v~n~l~~~~ 139 (316)
....++++...+.|.|++. +|+ ....++..+.+..
T Consensus 177 ~~~~~~~i~~~~pdaV~~~-~~~~~a~~~~~~~~~~G 212 (341)
T cd06341 177 PTPQAQQAAAAGADAIITV-LDAAVCASVLKAVRAAG 212 (341)
T ss_pred HHHHHHHHHhcCCCEEEEe-cChHHHHHHHHHHHHcC
Confidence 3344444444457777655 455 7777888887764
No 177
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=25.32 E-value=1.4e+02 Score=31.88 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=46.9
Q ss_pred ccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCC-CcchhhhhhC-CCCCCCCCCCCH
Q psy16024 97 ADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLG-TGNDLSRVLG-WGKLYDRDTCSP 174 (316)
Q Consensus 97 ~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~G-TgNd~Ar~lg-~~~~~~~~~~~~ 174 (316)
.-..|++-.++++.+++.+. +|++=|||+ |++- +|... ++-|+ +| +|.|.|+... +-. .+.++
T Consensus 650 ar~sPe~K~~iV~~lq~~g~--vVam~GDGv-NDap-ALk~A----dVGIA---mg~~gtdvAk~aADivL----~dd~f 714 (941)
T TIGR01517 650 ARSSPLDKQLLVLMLKDMGE--VVAVTGDGT-NDAP-ALKLA----DVGFS---MGISGTEVAKEASDIIL----LDDNF 714 (941)
T ss_pred EECCHHHHHHHHHHHHHCCC--EEEEECCCC-chHH-HHHhC----Cccee---cCCCccHHHHHhCCEEE----ecCCH
Confidence 34568898899998877533 566668998 8776 55554 23343 57 8999998763 211 01255
Q ss_pred HHHHHHHHccCC
Q psy16024 175 FQILDNLTRSKV 186 (316)
Q Consensus 175 ~~~l~~l~~~~~ 186 (316)
......+..|+.
T Consensus 715 ~~I~~~i~~gR~ 726 (941)
T TIGR01517 715 ASIVRAVKWGRN 726 (941)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 178
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=24.69 E-value=1.3e+02 Score=24.77 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=44.0
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCC---ceEEEcccCChHHHHHHHHhCCCCCceEEEEEcC--cchHHHHHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNP---LQVVDLADKSPEEALQWVSLMPSSGQTLILAAGG--DGTAAWILNTIH 136 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~---~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GG--DGTl~~v~n~l~ 136 (316)
++++|++-.+.| ..+++.+.+.+.|.. ..++.+..... .++ .++|.||+.++ -|.+...+..+.
T Consensus 1 MkilIvY~S~~G--~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~-------~~l--~~yD~vIlGspi~~G~~~~~~~~fl 69 (177)
T PRK11104 1 MKTLILYSSRDG--QTRKIASYIASELKEGIQCDVVNLHRIEE-------PDL--SDYDRVVIGASIRYGHFHSALYKFV 69 (177)
T ss_pred CcEEEEEECCCC--hHHHHHHHHHHHhCCCCeEEEEEhhhcCc-------cCH--HHCCEEEEECccccCCcCHHHHHHH
Confidence 357888876555 455677778887775 22232211100 011 23788777665 356666555554
Q ss_pred cCC--CCCCCcEEEecCC
Q psy16024 137 NMK--LDPAPSVGIIPLG 152 (316)
Q Consensus 137 ~~~--~~~~~~lgiiP~G 152 (316)
... .-...+++++-.|
T Consensus 70 ~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 70 KKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHHHHhCCCeEEEEEec
Confidence 321 1124578888777
No 179
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=24.63 E-value=2.1e+02 Score=25.22 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=26.1
Q ss_pred CCceEEEEEcCcchHHHHHHHHHcCC-CCCCCcEEEecCCC
Q psy16024 114 SGQTLILAAGGDGTAAWILNTIHNMK-LDPAPSVGIIPLGT 153 (316)
Q Consensus 114 ~~~~~iv~~GGDGTl~~v~n~l~~~~-~~~~~~lgiiP~GT 153 (316)
-+.++|+..||..++.+-+.-|.+.. .... .+ |+|.|-
T Consensus 140 lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~-~~-Im~GgG 178 (248)
T PRK11572 140 LGVARILTSGQQQDAEQGLSLIMELIAASDG-PI-IMAGAG 178 (248)
T ss_pred cCCCEEECCCCCCCHHHHHHHHHHHHHhcCC-CE-EEeCCC
Confidence 36899999999999888776664431 1122 34 888864
No 180
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=24.30 E-value=90 Score=27.51 Aligned_cols=51 Identities=16% Similarity=0.039 Sum_probs=35.2
Q ss_pred CCceEEEEEcCcchHHH----HHHHHHcCCCCCCCcEEEecC-CCcchhhhhhCCCC
Q psy16024 114 SGQTLILAAGGDGTAAW----ILNTIHNMKLDPAPSVGIIPL-GTGNDLSRVLGWGK 165 (316)
Q Consensus 114 ~~~~~iv~~GGDGTl~~----v~n~l~~~~~~~~~~lgiiP~-GTgNd~Ar~lg~~~ 165 (316)
++.+++++++||-++.. ++..+.... .....+-++|+ -+.+..|-.+|++-
T Consensus 101 ~g~~Vv~L~~GDP~~yst~~~l~~~l~~~~-~~~~~vevVPGISS~~aaaA~lg~pl 156 (249)
T TIGR02434 101 DDGTGAFLVWGDPSLYDSTLRILERLRALG-GVPFDYEVIPGITSVQALTARHRIPL 156 (249)
T ss_pred CCCcEEEEeCCCchHhhhHHHHHHHHHHhc-CCCCCEEEECCHHHHHHHHHHhCCCc
Confidence 45689999999998885 555554321 12357889998 55567777777764
No 181
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=24.29 E-value=36 Score=31.44 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=32.0
Q ss_pred CCcccccc-ccCCCCCCC--CcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEE
Q psy16024 60 VDLWKLGR-GNRKSGNGD--GSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAA 122 (316)
Q Consensus 60 ~~~~~~vi-vNp~sG~~~--~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~ 122 (316)
.++++.|. .||++|.+- +.+-.+.+.+..+...-.-+...+|-.+..+........+|.||++
T Consensus 201 ~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~G~~v~GP~paDt~F~~~~~~~~D~vvaM 266 (332)
T PRK00232 201 AEPRIAVCGLNPHAGEGGHFGREEIDIIIPALEELRAEGINLVGPLPADTLFQPAYLGDADAVLAM 266 (332)
T ss_pred CCCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCcCCCCCchhhccccccCCCCEEEEC
Confidence 34555554 599998753 3333333444433321111112345445555555555558999875
No 182
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=24.17 E-value=63 Score=25.95 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=19.4
Q ss_pred ceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCC
Q psy16024 116 QTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGT 153 (316)
Q Consensus 116 ~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GT 153 (316)
.|.||.-||=||+.|++.. ..|+-++|.-.
T Consensus 73 aDlvIs~aG~~Ti~E~l~~--------g~P~I~ip~~~ 102 (167)
T PF04101_consen 73 ADLVISHAGAGTIAEALAL--------GKPAIVIPLPG 102 (167)
T ss_dssp HSEEEECS-CHHHHHHHHC--------T--EEEE--TT
T ss_pred cCEEEeCCCccHHHHHHHc--------CCCeeccCCCC
Confidence 4888888999999998842 35667788855
No 183
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.85 E-value=74 Score=25.85 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=32.1
Q ss_pred EEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHc
Q psy16024 118 LILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTR 183 (316)
Q Consensus 118 ~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~ 183 (316)
.=..+|||+++...+..+.. ..++.+-+|=.|| ||+.....+. .+....++.+.+
T Consensus 35 ~N~g~~G~~~~~~~~~~~~~---~~~pd~vii~~G~-ND~~~~~~~~-------~~~~~~i~~i~~ 89 (177)
T cd01844 35 INLGFSGNARLEPEVAELLR---DVPADLYIIDCGP-NIVGAEAMVR-------ERLGPLVKGLRE 89 (177)
T ss_pred EEeeecccccchHHHHHHHH---hcCCCEEEEEecc-CCCccHHHHH-------HHHHHHHHHHHH
Confidence 44778999886544433332 1257788888888 8875432111 145556666654
No 184
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=22.54 E-value=37 Score=31.23 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=31.8
Q ss_pred CCcccccc-ccCCCCCCC--CcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEE
Q psy16024 60 VDLWKLGR-GNRKSGNGD--GSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAA 122 (316)
Q Consensus 60 ~~~~~~vi-vNp~sG~~~--~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~ 122 (316)
.++++.|. .||++|.+- +.+-.+.+.+.++..+-.-+...+|-.+..+........+|.|+++
T Consensus 200 ~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAi~~~~~~G~~v~GP~paDt~F~~~~~~~~D~vvaM 265 (326)
T PRK03371 200 VKPRIAVAGVNPHAGENGLFGDEEIRIVTPAIEAMRAKGMDVYGPCPPDTVFLQAYEGQYDMVVAM 265 (326)
T ss_pred CCCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCcccCCCCchhhcccccccCCCEEEEc
Confidence 34555554 599999753 3333344444443321101112244444455555544558998875
No 185
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=22.54 E-value=1.7e+02 Score=26.73 Aligned_cols=59 Identities=7% Similarity=-0.024 Sum_probs=29.1
Q ss_pred cchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024 78 SHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
.++..++.+.|... ++.......+...++.+++-.+ +|.+|.++-=|.+-..+.-+.+.
T Consensus 16 ~~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~f~~-~d~iIfI~A~GIaVR~IAP~l~d 74 (315)
T PRK05788 16 RDLAERLKAKLKAD-CYTSEKLEYEGFADAFEEAFGC-YDALIFIMATGIAVRVIAPLLKD 74 (315)
T ss_pred HHHHHHHHHhcccc-eecchhhccCCHHHHHHHHHhc-CCeEEEEEChHHHHHHhchhhhc
Confidence 34555666666432 2211100011223444444333 67777777777776666665554
No 186
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=22.47 E-value=4.2e+02 Score=21.38 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=40.5
Q ss_pred ccccccCCCCCCCCcchHHHHHhhcCCc--eEEEcccCChHHHHHHHHhCCCCCceEEEEEc---CcchHHHH----HHH
Q psy16024 64 KLGRGNRKSGNGDGSHILSTFRRLLNPL--QVVDLADKSPEEALQWVSLMPSSGQTLILAAG---GDGTAAWI----LNT 134 (316)
Q Consensus 64 ~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~G---GDGTl~~v----~n~ 134 (316)
+.||+= |..|..+++.+.+.+.|... .++.+....+. + +. ++|.|+++. |+|-+... ++.
T Consensus 2 i~IiY~--S~tGnTe~vA~~Ia~~l~~~~~~i~~~~~~~~~---~----l~--~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 2 IGIFYG--TDTGNTEGIAEKIQKELGEDDVDVFNIAKASKE---D----LN--AYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred EEEEEE--CCCChHHHHHHHHHHHhCCCceEEEEcccCCHh---H----Hh--hCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 345553 45566777888888877653 33433222221 1 12 267777766 68866543 443
Q ss_pred HHcCCCCCCCcEEEecCC
Q psy16024 135 IHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 135 l~~~~~~~~~~lgiiP~G 152 (316)
|..... ...+++++-+|
T Consensus 71 l~~~~l-~gk~v~~fg~g 87 (167)
T TIGR01752 71 LEELDF-TGKTVALFGLG 87 (167)
T ss_pred hhcCCC-CCCEEEEEecC
Confidence 332221 23567765544
No 187
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=22.41 E-value=1.3e+02 Score=27.91 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=36.1
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEEcccC--C-----hHHHHHHHHhCCCCCceEEEEEcC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADK--S-----PEEALQWVSLMPSSGQTLILAAGG 124 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~--~-----~~~~~~~~~~~~~~~~~~iv~~GG 124 (316)
++++++---|=+. .-+.+++...|+..+++++.-- . -..+.++|++ ++.|.|+++||
T Consensus 31 kVLi~YGGGSIKr--nGvydqV~~~Lkg~~~~E~~GVEPNP~~~Tv~kaV~i~ke---e~idflLAVGG 94 (384)
T COG1979 31 KVLIVYGGGSIKK--NGVYDQVVEALKGIEVIEFGGVEPNPRLETLMKAVEICKE---ENIDFLLAVGG 94 (384)
T ss_pred eEEEEecCccccc--cchHHHHHHHhcCceEEEecCCCCCchHHHHHHHHHHHHH---cCceEEEEecC
Confidence 7777774332222 2368889999998777654321 1 2345566665 34789999999
No 188
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=22.34 E-value=1.5e+02 Score=31.29 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=46.9
Q ss_pred cCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhC-CCCCCCCCCCCHHH
Q psy16024 98 DKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG-WGKLYDRDTCSPFQ 176 (316)
Q Consensus 98 t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg-~~~~~~~~~~~~~~ 176 (316)
-..|+|-.++++.++++ ..+|++=||| +|++- +|... -+|+- +|+|.|.|+... +=. .+.++..
T Consensus 585 r~~Pe~K~~iV~~lq~~--G~vVam~GDG-vNDap-ALk~A------dVGIA-mg~gtdvAk~aADiVL----ldd~~~~ 649 (867)
T TIGR01524 585 RLTPMQKSRIIGLLKKA--GHTVGFLGDG-INDAP-ALRKA------DVGIS-VDTAADIAKEASDIIL----LEKSLMV 649 (867)
T ss_pred ECCHHHHHHHHHHHHhC--CCEEEEECCC-cccHH-HHHhC------CEEEE-eCCccHHHHHhCCEEE----ecCChHH
Confidence 45688988999988875 4577778899 67765 45443 35644 458999999764 110 0125555
Q ss_pred HHHHHHccC
Q psy16024 177 ILDNLTRSK 185 (316)
Q Consensus 177 ~l~~l~~~~ 185 (316)
...++..|+
T Consensus 650 I~~ai~~gR 658 (867)
T TIGR01524 650 LEEGVIEGR 658 (867)
T ss_pred HHHHHHHHH
Confidence 556665554
No 189
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=22.24 E-value=37 Score=31.19 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=30.8
Q ss_pred CCcccccc-ccCCCCCCC--CcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEE
Q psy16024 60 VDLWKLGR-GNRKSGNGD--GSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAA 122 (316)
Q Consensus 60 ~~~~~~vi-vNp~sG~~~--~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~ 122 (316)
.++++.|. .||++|.+- +.+-.+.+.+..+..+-.-+...+|-.+..+..+.....+|.|+++
T Consensus 194 ~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~G~~v~GP~paDt~F~~~~~~~~D~vvaM 259 (320)
T TIGR00557 194 ARPRIAVAGLNPHAGEGGHLGREEIDIIIPALEALRAEGIDLIGPLPADTLFHPAALAKYDAVLAM 259 (320)
T ss_pred CCCCEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCcccCCCCchhhcccccccCCCEEEEC
Confidence 34566554 599998753 2332333444333221101112244444445544444458988865
No 190
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=22.10 E-value=1.3e+02 Score=25.83 Aligned_cols=46 Identities=7% Similarity=0.146 Sum_probs=28.3
Q ss_pred HHHHHHhCCCCCceEEEEEcC-cchHHHHHHHHHcCCCCCCCcEEEecCCCc
Q psy16024 104 ALQWVSLMPSSGQTLILAAGG-DGTAAWILNTIHNMKLDPAPSVGIIPLGTG 154 (316)
Q Consensus 104 ~~~~~~~~~~~~~~~iv~~GG-DGTl~~v~n~l~~~~~~~~~~lgiiP~GTg 154 (316)
+.++++++.++ ..+|+.|| .|.=..+..+..+.. ...|+|+|.|-.
T Consensus 63 a~~l~~~l~~~--g~~IVSG~A~GiD~~ah~~al~~~---g~tIaVl~~gld 109 (220)
T TIGR00732 63 TRKLAEELAKN--GVTIVSGLALGIDGIAHKAALKVN---GRTIAVLGTGLD 109 (220)
T ss_pred HHHHHHHHHhC--CCEEEcCchhhHHHHHHHHHHHcC---CCEEEEECCCCc
Confidence 44555566554 44566666 555555555555542 589999999963
No 191
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=22.07 E-value=1.6e+02 Score=29.18 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=25.6
Q ss_pred CceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 115 GQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 115 ~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
+.|.||++|| |++.++.-.+...- ...+|+..+|.
T Consensus 269 r~D~IIAIGG-Gsv~D~AKfvA~~y-~rGi~~i~vPT 303 (542)
T PRK14021 269 RSDAIVGLGG-GAATDLAGFVAATW-MRGIRYVNCPT 303 (542)
T ss_pred CCcEEEEEcC-hHHHHHHHHHHHHH-HcCCCEEEeCC
Confidence 4789999988 89999887765310 12478888887
No 192
>PRK09271 flavodoxin; Provisional
Probab=21.78 E-value=53 Score=26.58 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=40.4
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--E--EEcccCChHHHHHHHHhCCCCCceEEEEEc---CcchHH----H
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--V--VDLADKSPEEALQWVSLMPSSGQTLILAAG---GDGTAA----W 130 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v--~~~~t~~~~~~~~~~~~~~~~~~~~iv~~G---GDGTl~----~ 130 (316)
++++|++=..+| .++++.+.+.+.|...+ + +.+... +..+...++. .++.|++.. |+|.+. .
T Consensus 1 mkv~IvY~S~tG--nTe~~A~~ia~~l~~~g~~v~~~~~~~~---~~~~~~~~~~--~~d~vilgt~T~~~G~~p~~~~~ 73 (160)
T PRK09271 1 MRILLAYASLSG--NTREVAREIEERCEEAGHEVDWVETDVQ---TLAEYPLDPE--DYDLYLLGTWTDNAGRTPPEMKR 73 (160)
T ss_pred CeEEEEEEcCCc--hHHHHHHHHHHHHHhCCCeeEEEecccc---cccccccCcc--cCCEEEEECcccCCCcCCHHHHH
Confidence 357778866555 45567777777775432 2 222111 1111111222 257766665 567644 4
Q ss_pred HHHHHHcCCCCCCCcEEEecCC
Q psy16024 131 ILNTIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 131 v~n~l~~~~~~~~~~lgiiP~G 152 (316)
+++.|.... .....++++-.|
T Consensus 74 f~~~l~~~~-~~~k~~avfgsg 94 (160)
T PRK09271 74 FIAELAETI-GKPPNVAVFGTG 94 (160)
T ss_pred HHHHHHHHh-ccCCeEEEEecC
Confidence 444444321 123457776444
No 193
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=21.72 E-value=40 Score=31.08 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=31.3
Q ss_pred Ccccccc-ccCCCCCCC--CcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEE
Q psy16024 61 DLWKLGR-GNRKSGNGD--GSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAA 122 (316)
Q Consensus 61 ~~~~~vi-vNp~sG~~~--~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~ 122 (316)
++++.|. .||++|.+- +.+-.+.+.+.++..+-..+...+|-.+..+........+|.||++
T Consensus 198 ~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~~~~Gi~v~GP~paDt~F~~~~~~~~D~vvaM 262 (329)
T PRK01909 198 APRILVTGLNPHAGENGYLGREEIDVIEPALARARAAGIDARGPYPADTLFQPRYLEDADCVLAM 262 (329)
T ss_pred CCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCCchhhcccccccCCCEEEEc
Confidence 4555554 599998753 3333334444443321111112244444455555544558998865
No 194
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=21.62 E-value=1e+02 Score=25.03 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=27.9
Q ss_pred cchHHHHHhhcCCceE----EEc-ccCChHHHHHHHHhCCCCCceEEEE
Q psy16024 78 SHILSTFRRLLNPLQV----VDL-ADKSPEEALQWVSLMPSSGQTLILA 121 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~v----~~~-~t~~~~~~~~~~~~~~~~~~~~iv~ 121 (316)
....++..+.|+++++ ..+ ....|+...++++++.+++..+||+
T Consensus 15 ~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIA 63 (162)
T COG0041 15 WDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIA 63 (162)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 3455555666665443 222 2356888899999998887766554
No 195
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=21.47 E-value=38 Score=26.84 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=26.5
Q ss_pred CCceEEEEEcCcchHHHH------HHHHHcCCCCCCCcEEEecCCCcchhhhh
Q psy16024 114 SGQTLILAAGGDGTAAWI------LNTIHNMKLDPAPSVGIIPLGTGNDLSRV 160 (316)
Q Consensus 114 ~~~~~iv~~GGDGTl~~v------~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~ 160 (316)
..||.|++.||.|....+ +..+.+.-....-+||-|-.|. .-+++.
T Consensus 36 ~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~-~~L~~~ 87 (147)
T PF01965_consen 36 SDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGP-AVLAAA 87 (147)
T ss_dssp GGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCH-HHHHHT
T ss_pred hhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCc-chhhcc
Confidence 349999999999843322 2233222112357899998888 444443
No 196
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=21.26 E-value=1.3e+02 Score=31.14 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=50.4
Q ss_pred hhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhC-CC
Q psy16024 86 RLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG-WG 164 (316)
Q Consensus 86 ~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg-~~ 164 (316)
+.++...++ ....|++-.++++.+++. ..+|++=|||. |++- +|... -+||- +|+|.|.|+.-. +=
T Consensus 507 ~~~~~~~vf--Ar~~Pe~K~~iV~~lq~~--G~~VamvGDGv-NDap-AL~~A------dVGIA-m~~gtdvAkeaADiv 573 (755)
T TIGR01647 507 EMVEDADGF--AEVFPEHKYEIVEILQKR--GHLVGMTGDGV-NDAP-ALKKA------DVGIA-VAGATDAARSAADIV 573 (755)
T ss_pred HHHHhCCEE--EecCHHHHHHHHHHHHhc--CCEEEEEcCCc-ccHH-HHHhC------CeeEE-ecCCcHHHHHhCCEE
Confidence 333333444 334688888899988775 45788889986 8765 55544 34533 468999999753 10
Q ss_pred CCCCCCCCCHHHHHHHHHccC
Q psy16024 165 KLYDRDTCSPFQILDNLTRSK 185 (316)
Q Consensus 165 ~~~~~~~~~~~~~l~~l~~~~ 185 (316)
. .+.++......+..|+
T Consensus 574 L----l~d~l~~I~~ai~~gR 590 (755)
T TIGR01647 574 L----TEPGLSVIVDAILESR 590 (755)
T ss_pred E----EcCChHHHHHHHHHHH
Confidence 0 0125555555555554
No 197
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=20.77 E-value=2.8e+02 Score=23.73 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=37.3
Q ss_pred chHHHHHhhcCCc---eE----EEcccC-ChHHHHHHHHhCCCCCceEEEEEcCcch-HHHHHHHHHcCCCCCCCcEEEe
Q psy16024 79 HILSTFRRLLNPL---QV----VDLADK-SPEEALQWVSLMPSSGQTLILAAGGDGT-AAWILNTIHNMKLDPAPSVGII 149 (316)
Q Consensus 79 ~~~~~~~~~l~~~---~v----~~~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGT-l~~v~n~l~~~~~~~~~~lgii 149 (316)
.+.+.+++.+++. +. ....+. .+....+..+++..++.|.||+.+.|-. +.++++.+.+. .+|+-.+
T Consensus 16 ~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~----~iPvv~~ 91 (272)
T cd06300 16 QMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEEACEA----GIPVVSF 91 (272)
T ss_pred HHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHC----CCeEEEE
Confidence 3445555555554 42 222232 3344445556655556899999988743 45577766554 3455444
No 198
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=20.63 E-value=1.4e+02 Score=27.12 Aligned_cols=69 Identities=22% Similarity=0.279 Sum_probs=36.0
Q ss_pred ccccCCCCCCC-CcchHHHHHhhcCCce--EEEccc----------CChHHHHHHHHhCCCCCceEEEE-EcCcchHHHH
Q psy16024 66 GRGNRKSGNGD-GSHILSTFRRLLNPLQ--VVDLAD----------KSPEEALQWVSLMPSSGQTLILA-AGGDGTAAWI 131 (316)
Q Consensus 66 vivNp~sG~~~-~~~~~~~~~~~l~~~~--v~~~~t----------~~~~~~~~~~~~~~~~~~~~iv~-~GGDGTl~~v 131 (316)
-|+.|.|+-.. .....++..+.|+..+ |..-.+ ....-|.++.+.+.+.+.+.|++ -||+|+.. +
T Consensus 4 ~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~r-l 82 (308)
T cd07062 4 AVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDSNE-L 82 (308)
T ss_pred EEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHhh-h
Confidence 46778776432 1334455555665532 221111 11233556666666665666554 59999864 4
Q ss_pred HHHH
Q psy16024 132 LNTI 135 (316)
Q Consensus 132 ~n~l 135 (316)
+..|
T Consensus 83 L~~l 86 (308)
T cd07062 83 LPYL 86 (308)
T ss_pred hhhc
Confidence 5444
No 199
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=20.58 E-value=1.8e+02 Score=25.83 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=21.5
Q ss_pred ceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 116 QTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 116 ~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
.+.||++|| |.+.+++.-.... ....+++..+|.
T Consensus 30 ~~~iiaiGG-Gvv~Dl~GFaAs~-y~RGi~~i~vPT 63 (260)
T PF01761_consen 30 DDLIIAIGG-GVVGDLAGFAAST-YMRGIPFIQVPT 63 (260)
T ss_dssp TEEEEEEES-HHHHHHHHHHHHH-BTT--EEEEEE-
T ss_pred CCeEEEECC-hHHHHHHHHHHHH-HccCCceEeccc
Confidence 577777776 8898888554433 233578888886
No 200
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=20.41 E-value=86 Score=24.05 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=35.5
Q ss_pred ccccccccCCCCCCCCcchHHHHHh---hcCCceE--EEccc---------CChHHHHHHHHhCCC-CCceEEEEEcCcc
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRR---LLNPLQV--VDLAD---------KSPEEALQWVSLMPS-SGQTLILAAGGDG 126 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~---~l~~~~v--~~~~t---------~~~~~~~~~~~~~~~-~~~~~iv~~GGDG 126 (316)
.+++||+=|...........+.+.. .|.+..+ +.+.. ..+..+..+-+.+.- .+...+|.+|=||
T Consensus 10 ~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG 89 (118)
T PF13778_consen 10 NRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDG 89 (118)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCC
Confidence 4677777776665443333344433 2333333 22211 123344455555541 2357789999999
Q ss_pred hHH
Q psy16024 127 TAA 129 (316)
Q Consensus 127 Tl~ 129 (316)
++-
T Consensus 90 ~vK 92 (118)
T PF13778_consen 90 GVK 92 (118)
T ss_pred cEE
Confidence 863
No 201
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=20.40 E-value=89 Score=26.28 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=23.4
Q ss_pred HHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024 106 QWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 106 ~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
+...++. .+|+|++-|| |++.++++.+...
T Consensus 95 ~~L~~~~--~~daiFIGGg-~~i~~ile~~~~~ 124 (187)
T COG2242 95 EALPDLP--SPDAIFIGGG-GNIEEILEAAWER 124 (187)
T ss_pred HhhcCCC--CCCEEEECCC-CCHHHHHHHHHHH
Confidence 4444444 3799999999 9999999998775
No 202
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=20.26 E-value=1.7e+02 Score=29.25 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=53.3
Q ss_pred CCccccccccCCCCCCCCcchHHHHHhhcCCceE----EEc-ccCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHH
Q psy16024 60 VDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQV----VDL-ADKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILN 133 (316)
Q Consensus 60 ~~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v----~~~-~t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n 133 (316)
.+.++.||. |+.......++....|+.+++ ... ....|.+..++++++..++.++ |.++|+.+.|--|+.
T Consensus 409 ~~~~v~i~~----gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a 484 (577)
T PLN02948 409 GTPLVGIIM----GSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVA 484 (577)
T ss_pred CCCeEEEEE----CchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHh
Confidence 345566665 333334456666677766543 222 2356788888888876555554 667799999999998
Q ss_pred HHHcCCCCCCCcEEEecCCCc
Q psy16024 134 TIHNMKLDPAPSVGIIPLGTG 154 (316)
Q Consensus 134 ~l~~~~~~~~~~lgiiP~GTg 154 (316)
++-. .|+-=+|..++
T Consensus 485 ~~t~------~pvi~vp~~~~ 499 (577)
T PLN02948 485 SMTP------LPVIGVPVKTS 499 (577)
T ss_pred hccC------CCEEEcCCCCC
Confidence 8754 34555566544
No 203
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=20.26 E-value=1.7e+02 Score=24.90 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCCCceEEEEEcCcchHHH----HHHHHHcCCCCCCCcEEEecCCC-cchhhhhhCCCC
Q psy16024 103 EALQWVSLMPSSGQTLILAAGGDGTAAW----ILNTIHNMKLDPAPSVGIIPLGT-GNDLSRVLGWGK 165 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~~iv~~GGDGTl~~----v~n~l~~~~~~~~~~lgiiP~GT-gNd~Ar~lg~~~ 165 (316)
+..+.+.+...++.++++++.||-++.. +++.+.+. .+++=++|.=| .+..+-.+|++-
T Consensus 59 ~~~~~i~~~~~~g~~V~~L~~GDP~~~~~~~~l~~~~~~~----g~~veviPGiSS~~aa~a~~g~~l 122 (229)
T TIGR01465 59 EIVDIMSDAHREGKLVVRLHTGDPSIYGAIAEQMQLLEAL----GIPYEVVPGVSSFFAAAAALGAEL 122 (229)
T ss_pred HHHHHHHHHHHCCCeEEEEeCcCccccccHHHHHHHHHHC----CCCEEEECChhHHHHHHHHcCCCc
Confidence 3334443333334578888899965554 44444332 46789999844 344445566653
No 204
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=20.22 E-value=1.5e+02 Score=19.66 Aligned_cols=46 Identities=13% Similarity=0.306 Sum_probs=30.1
Q ss_pred cccEEEEECCeeecCCCc--------eeEEEEccccccCCCCCCCCCCCCCCCc
Q psy16024 267 DQRIELYLDGERVDLPPI--------ESVVVLNIPSWASGVDLWKLGRGQKSPF 312 (316)
Q Consensus 267 ~~~~~i~~dg~~~~~~~~--------~~~~v~N~~~~ggg~~~~p~a~~~DG~l 312 (316)
..++++..||++...... -.+...-.+-|..|++++......||.|
T Consensus 4 nD~VtVKTDG~~rR~G~ilavE~F~EG~MYLvaL~dYP~GiWFFNE~~~~dG~F 57 (62)
T PF10781_consen 4 NDRVTVKTDGGPRREGVILAVEPFNEGTMYLVALEDYPAGIWFFNEKDSPDGTF 57 (62)
T ss_pred ccEEEEecCCcccccceEEEEeeccCcEEEEEEcCcCCcceEEEecCCCCCcEE
Confidence 356788888865432111 1123345567888999999999999865
No 205
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=20.22 E-value=2.1e+02 Score=22.94 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=37.7
Q ss_pred CCCccccccccCCCCCCCCcchHHHHHhhcCCce--EEEc-ccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH
Q psy16024 59 GVDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDL-ADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 59 g~~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~-~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l 135 (316)
|.++++++.-=-..|-.++.+ -+.+.|...+ |... .-++|++ .++++.++..+.|++++=||-=.+.+.++
T Consensus 10 g~rprvlvak~GlDgHd~gak---via~~l~d~GfeVi~~g~~~tp~e---~v~aA~~~dv~vIgvSsl~g~h~~l~~~l 83 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAK---VIARALADAGFEVINLGLFQTPEE---AVRAAVEEDVDVIGVSSLDGGHLTLVPGL 83 (143)
T ss_pred CCCceEEEeccCccccccchH---HHHHHHHhCCceEEecCCcCCHHH---HHHHHHhcCCCEEEEEeccchHHHHHHHH
Confidence 344555444332333333333 3456666544 4322 1234544 44455455579999998888655555544
Q ss_pred H
Q psy16024 136 H 136 (316)
Q Consensus 136 ~ 136 (316)
.
T Consensus 84 v 84 (143)
T COG2185 84 V 84 (143)
T ss_pred H
Confidence 3
No 206
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=20.08 E-value=1.6e+02 Score=25.66 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=28.3
Q ss_pred CCCCCceEEEEEcCc-c-hHHHHHHHHHcCCCCCCCcEEEecCCC
Q psy16024 111 MPSSGQTLILAAGGD-G-TAAWILNTIHNMKLDPAPSVGIIPLGT 153 (316)
Q Consensus 111 ~~~~~~~~iv~~GGD-G-Tl~~v~n~l~~~~~~~~~~lgiiP~GT 153 (316)
+.+.+.|.|++-|=| + |+.+++..+.+. ..+|+-+.|.+.
T Consensus 28 ~~~~gtDai~VGGS~~~~~~d~vv~~ik~~---~~lPvilfPg~~ 69 (230)
T PF01884_consen 28 ACESGTDAIIVGGSDTGVTLDNVVALIKRV---TDLPVILFPGSP 69 (230)
T ss_dssp HHCTT-SEEEEE-STHCHHHHHHHHHHHHH---SSS-EEEETSTC
T ss_pred HHhcCCCEEEECCCCCccchHHHHHHHHhc---CCCCEEEeCCCh
Confidence 355568999998888 5 778888887765 368999998765
Done!