Query psy16024
Match_columns 316
No_of_seqs 309 out of 1506
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 18:58:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 1E-46 3.5E-51 341.7 13.6 218 61-315 8-227 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 3.3E-42 1.1E-46 316.6 15.1 218 62-315 25-244 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 6.5E-42 2.2E-46 313.9 13.0 218 62-315 30-249 (332)
4 1yt5_A Inorganic polyphosphate 99.3 1.2E-12 4.3E-17 115.0 6.4 99 62-187 1-99 (258)
5 2an1_A Putative kinase; struct 99.3 6.9E-13 2.4E-17 118.9 4.7 106 62-186 6-121 (292)
6 1u0t_A Inorganic polyphosphate 99.2 7.2E-12 2.5E-16 112.9 5.8 112 62-188 5-135 (307)
7 2i2c_A Probable inorganic poly 99.2 2E-11 6.8E-16 108.2 7.7 95 62-187 1-96 (272)
8 3afo_A NADH kinase POS5; alpha 97.7 2.1E-05 7.3E-10 72.4 3.9 112 61-188 41-175 (388)
9 1z0s_A Probable inorganic poly 96.7 0.0006 2E-08 59.8 2.1 98 56-183 22-122 (278)
10 3pfn_A NAD kinase; structural 94.7 0.058 2E-06 49.0 6.7 60 115-187 108-167 (365)
11 3ors_A N5-carboxyaminoimidazol 89.2 1.6 5.5E-05 34.5 7.7 71 78-154 16-92 (163)
12 4grd_A N5-CAIR mutase, phospho 87.4 2.6 9E-05 33.6 7.9 82 60-151 11-98 (173)
13 3iv7_A Alcohol dehydrogenase I 83.5 1 3.5E-05 40.8 4.5 80 63-151 39-120 (364)
14 3oow_A Phosphoribosylaminoimid 83.4 2.6 9E-05 33.4 6.2 71 78-154 18-94 (166)
15 1o2d_A Alcohol dehydrogenase, 82.8 2.9 9.9E-05 37.8 7.2 91 62-155 41-154 (371)
16 3jzd_A Iron-containing alcohol 81.1 1.4 4.7E-05 39.8 4.3 80 63-151 38-121 (358)
17 3hl0_A Maleylacetate reductase 81.1 1.6 5.5E-05 39.3 4.8 80 63-151 36-119 (353)
18 1pfk_A Phosphofructokinase; tr 76.8 1.5 5.1E-05 39.0 3.1 50 105-159 84-133 (320)
19 1xmp_A PURE, phosphoribosylami 76.4 6.7 0.00023 31.2 6.4 70 78-153 24-99 (170)
20 3lp6_A Phosphoribosylaminoimid 75.9 2.9 0.0001 33.4 4.2 71 78-154 20-96 (174)
21 3bfj_A 1,3-propanediol oxidore 74.1 4 0.00014 37.1 5.3 93 63-157 35-150 (387)
22 3ce9_A Glycerol dehydrogenase; 72.9 2.8 9.7E-05 37.5 4.0 80 63-151 36-120 (354)
23 1zxx_A 6-phosphofructokinase; 72.7 1.5 5.3E-05 38.8 2.1 52 103-159 81-132 (319)
24 3kuu_A Phosphoribosylaminoimid 72.4 7.3 0.00025 31.1 5.7 66 78-148 25-96 (174)
25 1o4v_A Phosphoribosylaminoimid 71.7 8.5 0.00029 31.0 6.0 75 73-153 21-101 (183)
26 2hig_A 6-phospho-1-fructokinas 70.9 1.4 4.8E-05 41.4 1.4 51 106-158 180-233 (487)
27 1oj7_A Hypothetical oxidoreduc 70.6 8.9 0.0003 35.0 6.8 93 62-157 51-167 (408)
28 3rg8_A Phosphoribosylaminoimid 70.4 9.4 0.00032 30.0 5.9 61 78-138 15-82 (159)
29 1u11_A PURE (N5-carboxyaminoim 69.8 9.7 0.00033 30.6 5.9 81 63-153 23-109 (182)
30 4b4k_A N5-carboxyaminoimidazol 68.5 9 0.00031 30.7 5.5 60 77-136 34-99 (181)
31 2gru_A 2-deoxy-scyllo-inosose 63.8 4.7 0.00016 36.4 3.5 84 62-151 35-128 (368)
32 4a3s_A 6-phosphofructokinase; 63.8 3.1 0.00011 36.9 2.1 46 108-158 86-131 (319)
33 3trh_A Phosphoribosylaminoimid 63.2 9.8 0.00034 30.2 4.7 68 78-151 19-92 (169)
34 2ywx_A Phosphoribosylaminoimid 62.1 16 0.00054 28.7 5.7 58 78-137 12-74 (157)
35 3uhj_A Probable glycerol dehyd 60.0 3 0.0001 38.1 1.4 81 62-151 53-138 (387)
36 3ox4_A Alcohol dehydrogenase 2 59.9 7.6 0.00026 35.2 4.1 89 63-155 33-144 (383)
37 2f48_A Diphosphate--fructose-6 57.7 4.7 0.00016 38.6 2.3 53 105-158 156-210 (555)
38 3hno_A Pyrophosphate-dependent 54.1 12 0.00042 34.3 4.5 57 101-158 90-148 (419)
39 1sg6_A Pentafunctional AROM po 53.2 11 0.00037 34.3 3.9 41 116-158 106-148 (393)
40 2h31_A Multifunctional protein 49.7 22 0.00074 32.7 5.3 61 78-138 278-345 (425)
41 3okf_A 3-dehydroquinate syntha 48.3 13 0.00046 33.7 3.7 84 62-151 63-157 (390)
42 3rf7_A Iron-containing alcohol 47.9 27 0.00093 31.4 5.7 46 105-151 99-159 (375)
43 1vlj_A NADH-dependent butanol 47.7 17 0.00057 33.2 4.3 92 63-157 45-159 (407)
44 1kq3_A Glycerol dehydrogenase; 44.2 40 0.0014 30.2 6.2 82 62-151 42-126 (376)
45 1jq5_A Glycerol dehydrogenase; 43.9 9.2 0.00031 34.4 1.9 82 62-151 32-118 (370)
46 1ta9_A Glycerol dehydrogenase; 43.7 18 0.00061 33.6 3.8 80 63-151 93-177 (450)
47 3opy_B 6-phosphofructo-1-kinas 37.2 21 0.00071 36.3 3.3 54 105-159 652-708 (941)
48 1rrm_A Lactaldehyde reductase; 36.7 27 0.00093 31.4 3.9 89 63-155 33-146 (386)
49 2x9a_A Attachment protein G3P; 36.5 8.8 0.0003 24.9 0.4 12 117-128 39-50 (65)
50 3o8l_A 6-phosphofructokinase, 36.5 15 0.00052 36.5 2.2 56 103-159 477-535 (762)
51 4hf7_A Putative acylhydrolase; 36.3 31 0.0011 27.6 3.8 41 120-162 56-96 (209)
52 3gw6_A Endo-N-acetylneuraminid 36.0 13 0.00046 31.7 1.5 15 116-130 46-60 (275)
53 1xah_A Sadhqs, 3-dehydroquinat 35.2 58 0.002 28.8 5.8 86 62-154 32-129 (354)
54 3sbx_A Putative uncharacterize 35.0 34 0.0012 27.6 3.7 47 102-152 31-78 (189)
55 3clh_A 3-dehydroquinate syntha 34.5 60 0.0021 28.6 5.7 84 62-151 27-119 (343)
56 1t35_A Hypothetical protein YV 34.5 41 0.0014 27.1 4.2 47 102-152 20-67 (191)
57 3opy_A 6-phosphofructo-1-kinas 34.4 24 0.00083 35.9 3.3 55 103-158 676-733 (989)
58 1rpb_A Tricyclic peptide RP 71 34.2 12 0.0004 19.1 0.5 11 149-159 2-12 (26)
59 3o8o_A 6-phosphofructokinase s 33.8 27 0.00094 34.7 3.5 53 107-159 91-161 (787)
60 2iz6_A Molybdenum cofactor car 33.4 48 0.0016 26.4 4.4 47 102-152 32-79 (176)
61 3ndc_A Precorrin-4 C(11)-methy 32.4 67 0.0023 27.1 5.5 47 115-165 76-127 (264)
62 1rcu_A Conserved hypothetical 32.4 36 0.0012 27.7 3.5 46 102-151 45-90 (195)
63 1ydh_A AT5G11950; structural g 32.3 41 0.0014 27.8 3.9 45 102-150 28-73 (216)
64 3opy_A 6-phosphofructo-1-kinas 32.2 16 0.00056 37.1 1.7 53 106-159 295-366 (989)
65 3o8o_A 6-phosphofructokinase s 32.1 26 0.00088 34.9 3.0 54 104-158 472-528 (787)
66 3o8o_B 6-phosphofructokinase s 31.0 28 0.00096 34.6 3.1 53 107-159 90-160 (766)
67 3opy_B 6-phosphofructo-1-kinas 30.6 15 0.00052 37.3 1.1 52 107-159 268-338 (941)
68 3o8l_A 6-phosphofructokinase, 30.4 37 0.0013 33.7 3.8 53 106-158 100-170 (762)
69 3qbe_A 3-dehydroquinate syntha 27.8 59 0.002 29.2 4.4 83 62-151 44-137 (368)
70 2a33_A Hypothetical protein; s 27.6 55 0.0019 26.9 3.9 47 102-152 32-79 (215)
71 4e16_A Precorrin-4 C(11)-methy 27.5 83 0.0028 26.3 5.2 48 114-165 76-128 (253)
72 1ujn_A Dehydroquinate synthase 26.8 80 0.0027 27.9 5.1 82 62-151 29-118 (348)
73 3qua_A Putative uncharacterize 26.6 53 0.0018 26.7 3.6 47 102-152 40-87 (199)
74 2iz6_A Molybdenum cofactor car 26.5 53 0.0018 26.1 3.5 30 117-151 110-139 (176)
75 4dxr_B Nesprin-1; beta-sandwic 25.7 21 0.0007 20.1 0.6 12 153-164 14-25 (35)
76 3o8o_B 6-phosphofructokinase s 25.5 25 0.00085 35.0 1.6 53 105-158 474-529 (766)
77 4eo1_A Attachment protein G3P; 22.5 17 0.00058 23.9 -0.2 11 118-128 44-54 (70)
78 1weh_A Conserved hypothetical 22.0 73 0.0025 25.0 3.5 46 102-151 20-65 (171)
79 4h1h_A LMO1638 protein; MCCF-l 21.4 44 0.0015 29.4 2.3 66 64-129 14-93 (327)
80 1s4d_A Uroporphyrin-III C-meth 20.6 1.8E+02 0.006 24.6 6.0 47 115-165 92-143 (280)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=1e-46 Score=341.70 Aligned_cols=218 Identities=21% Similarity=0.205 Sum_probs=174.1
Q ss_pred CccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024 61 DLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 61 ~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
.++++||+||+||++++.+.++++++.|+..+ +....|+.++|+.++++++.+ ++|.||++|||||+|||+|++...
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~~~l~~~ 86 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGGDGTVFECTNGLAPL 86 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEECHHHHHHHHHHHTTC
T ss_pred CCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEccchHHHHHHHHHhhC
Confidence 35899999999999998888889988887653 334468889999999998865 589999999999999999999874
Q ss_pred CCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeee
Q psy16024 139 KLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLS 218 (316)
Q Consensus 139 ~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~g 218 (316)
..++|||+||+||+|||||+||++. ++.++++.|.+++++++|+++++ +++|+|++|
T Consensus 87 --~~~~~l~iiP~Gt~N~~ar~lg~~~-------~~~~a~~~i~~g~~~~iDlg~v~--------------~~~F~~~~~ 143 (304)
T 3s40_A 87 --EIRPTLAIIPGGTCNDFSRTLGVPQ-------NIAEAAKLITKEHVKPVDVAKAN--------------GQHFLNFWG 143 (304)
T ss_dssp --SSCCEEEEEECSSCCHHHHHTTCCS-------SHHHHHHHHTTCCEEEEEEEEET--------------TEEESSEEE
T ss_pred --CCCCcEEEecCCcHHHHHHHcCCCc-------cHHHHHHHHHhCCeEEEEEEEEC--------------CEEEEEEEe
Confidence 2368999999999999999999987 89999999999999999999995 479999999
Q ss_pred eeeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCC
Q psy16024 219 IGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASG 298 (316)
Q Consensus 219 iG~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg 298 (316)
+||||+++.+++..+ ++.+|+++|++++++.+++++ ++++++++||++++. ++.+++|+|++|||||
T Consensus 144 ~G~da~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~~~~----~~~~~i~~dg~~~~~-~~~~v~v~N~~~~Ggg 210 (304)
T 3s40_A 144 IGLVSEVSNNIDAEE--------KAKLGKIGYYLSTIRTVKNAE----TFPVKITYDGQVYED-EAVLVMVGNGEYLGGI 210 (304)
T ss_dssp EC--------------------------CHHHHTTTC------C----CEEEEEEETTEEEEE-EEEEEEEECSSEETTE
T ss_pred ehHHHHHHHhcCHHH--------hhcCCchHHHHHHHHHHhhcC----CceEEEEECCEEEEe-EEEEEEEECCCcCCCC
Confidence 999999999876543 346899999999999998865 688999999998765 5788999999999999
Q ss_pred CCCCCCCCCCCCCcccc
Q psy16024 299 VDLWKLGRGQKSPFTLT 315 (316)
Q Consensus 299 ~~~~p~a~~~DG~ldv~ 315 (316)
+.++|.++++||+|||+
T Consensus 211 ~~~~p~a~~~DG~Ldv~ 227 (304)
T 3s40_A 211 PSFIPNVKCDDGTLDIF 227 (304)
T ss_dssp ECSSTTCCTTSSCEEEE
T ss_pred cccCCCCcCCCCEEEEE
Confidence 99999999999999986
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=3.3e-42 Score=316.62 Aligned_cols=218 Identities=21% Similarity=0.165 Sum_probs=181.6
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
.+++||+||.||++++.+.++++++.|+..+ +....|+.++++.++++++..+++|.||++||||||+||+|++.+.
T Consensus 25 ~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~~- 103 (337)
T 2qv7_A 25 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEK- 103 (337)
T ss_dssp EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTTC-
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHhC-
Confidence 3699999999999888888889999887653 3444677788888888887776789999999999999999999654
Q ss_pred CCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeee
Q psy16024 140 LDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSI 219 (316)
Q Consensus 140 ~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~gi 219 (316)
..++|||+||+||+|||||+||++. ++.++++.|.+|+.+++|+++++ +++|+|++++
T Consensus 104 -~~~~pl~iIP~GT~N~lAr~Lg~~~-------~~~~al~~i~~g~~~~iD~g~v~--------------~r~fl~~~~~ 161 (337)
T 2qv7_A 104 -PNRPKLGVIPMGTVNDFGRALHIPN-------DIMGALDVIIEGHSTKVDIGKMN--------------NRYFINLAAG 161 (337)
T ss_dssp -SSCCEEEEEECSSCCHHHHHTTCCS-------SHHHHHHHHHHTCEEEEEEEEET--------------TEEESSEEEE
T ss_pred -CCCCcEEEecCCcHhHHHHHcCCCC-------CHHHHHHHHHcCCcEEEEEEEEC--------------CEEEEEEeee
Confidence 3468999999999999999999987 89999999999999999999984 4799999999
Q ss_pred eeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCCC
Q psy16024 220 GVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGV 299 (316)
Q Consensus 220 G~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg~ 299 (316)
|+||+++.+++..+ ++.+|+++|.+.+++.++..+ .+++++++||+.++. +..+++++|++++|||+
T Consensus 162 G~~a~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~~~~----~~~~~i~~dg~~~~~-~~~~v~v~n~~~~gGg~ 228 (337)
T 2qv7_A 162 GQLTQVSYETPSKL--------KSIVGPFAYYIKGFEMLPQMK----AVDLRIEYDGNVFQG-EALLFFLGLTNSMAGFE 228 (337)
T ss_dssp ECBCC---------------------CGGGSCCCTTTTGGGBC----CEEEEEEETTEEEEE-EEEEEEEESSCCCSSCS
T ss_pred cccHHHHHHhhHHH--------HhccChHHHHHHHHHHHHhCC----CccEEEEECCEEEEe-eEEEEEEECCCCCCCCC
Confidence 99999998876543 245799999999999998765 678999999998765 57889999999999999
Q ss_pred CCCCCCCCCCCCcccc
Q psy16024 300 DLWKLGRGQKSPFTLT 315 (316)
Q Consensus 300 ~~~p~a~~~DG~ldv~ 315 (316)
.++|.|+++||.||++
T Consensus 229 ~i~P~a~~~DG~ldv~ 244 (337)
T 2qv7_A 229 KLVPDAKLDDGYFTLI 244 (337)
T ss_dssp CSSTTCCSSSSCEEEE
T ss_pred ccCCCCcCCCCeEEEE
Confidence 9999999999999986
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=6.5e-42 Score=313.86 Aligned_cols=218 Identities=19% Similarity=0.157 Sum_probs=177.7
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK 139 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~ 139 (316)
++++||+||.||++ +.++++.+.|...+ +....|++++++.++++++..+++|.||++|||||++||+|++.+..
T Consensus 30 ~~~~vi~Np~sg~~---~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~~~ 106 (332)
T 2bon_A 30 PASLLILNGKSTDN---LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCE 106 (332)
T ss_dssp CCEEEEECSSSTTC---HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCC---chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhhcc
Confidence 47999999999977 46777888776643 33345677778888877765555899999999999999999998643
Q ss_pred CCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcceeeEEEEEeechhhhhhcccceeEEEeeeee
Q psy16024 140 LDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSI 219 (316)
Q Consensus 140 ~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~~D~~~v~~~~~~~~~~~~~~~~~~f~n~~gi 219 (316)
...++|||+||+||+||||++++++. ++.++++.+.+|+.+++|+++++ ..++|+|++|+
T Consensus 107 ~~~~~plgiiP~Gt~N~fa~~l~i~~-------~~~~al~~i~~g~~~~iDlg~v~-------------~r~~fl~~~~~ 166 (332)
T 2bon_A 107 GDDIPALGILPLGTANDFATSVGIPE-------ALDKALKLAIAGDAIAIDMAQVN-------------KQTCFINMATG 166 (332)
T ss_dssp SSCCCEEEEEECSSSCHHHHHTTCCS-------SHHHHHHHHHHSEEEEEEEEEET-------------TSCEESSEEEE
T ss_pred cCCCCeEEEecCcCHHHHHHhcCCCC-------CHHHHHHHHHcCCeEEeeEEEEC-------------CceEEEEEEeE
Confidence 23468999999999999999999986 89999999999999999999985 22399999999
Q ss_pred eeeeeeeccchhhhccccccccccccccchhhhhhhHHHhhccccCccccEEEEECCeeecCCCceeEEEEccccccCCC
Q psy16024 220 GVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLNIPSWASGV 299 (316)
Q Consensus 220 G~dA~v~~~~~~~r~~~~~~~~~~~~g~~~Y~~~~~~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~~v~N~~~~ggg~ 299 (316)
|+||+++.+++..+ ++++|+++|++.+++.++..+ ++++++++||+.++. +..+++++|++|+|||+
T Consensus 167 G~da~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~~~~----~~~~~i~~dg~~~~~-~~~~v~v~N~~~~ggg~ 233 (332)
T 2bon_A 167 GFGTRITTETPEKL--------KAALGSVSYIIHGLMRMDTLQ----PDRCEIRGENFHWQG-DALVIGIGNGRQAGGGQ 233 (332)
T ss_dssp EEEEEC------------------CCHHHHHHHHHTSCEEEEE----CEEEEEEETTEEEEE-EESEEEEESSSCBTTTB
T ss_pred CccHHHHHHhhHHh--------HhcccHHHHHHHHHHHHhhCC----CeeEEEEECCEEEEE-EEEEEEEECCCccCCCc
Confidence 99999997655432 345799999999998887765 678999999998765 57788999999999999
Q ss_pred CCCCCCCCCCCCcccc
Q psy16024 300 DLWKLGRGQKSPFTLT 315 (316)
Q Consensus 300 ~~~p~a~~~DG~ldv~ 315 (316)
.++|.++++||.|||+
T Consensus 234 ~i~P~a~~~DG~Ldv~ 249 (332)
T 2bon_A 234 QLCPNALINDGLLQLR 249 (332)
T ss_dssp CSCTTCCTTSSCEEEE
T ss_pred ccCCCCCCCCCeEEEE
Confidence 9999999999999986
No 4
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.32 E-value=1.2e-12 Score=115.05 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=72.0
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLD 141 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~ 141 (316)
+++++|+||.+|++ +.+.++++.+.|+ ++. +.+. + +...+++|.||++|||||++++++.+.. .
T Consensus 1 mki~ii~Np~~~~~-~~~~~~~i~~~l~--~~~-~~~~---~------~~~~~~~D~vv~~GGDGTll~~a~~~~~-~-- 64 (258)
T 1yt5_A 1 MKIAILYREEREKE-GEFLKEKISKEHE--VIE-FGEA---N------APGRVTADLIVVVGGDGTVLKAAKKAAD-G-- 64 (258)
T ss_dssp CEEEEEECGGGHHH-HHHHHHHHTTTSE--EEE-EEES---S------SCSCBCCSEEEEEECHHHHHHHHTTBCT-T--
T ss_pred CEEEEEEeCCCchH-HHHHHHHHHHHhc--CCc-eecc---c------ccccCCCCEEEEEeCcHHHHHHHHHhCC-C--
Confidence 46889999999986 6667777777776 221 1221 1 2333458999999999999999998865 2
Q ss_pred CCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 142 PAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 142 ~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
.|.+|| +.||.|.++ .+. +. ++.++++.+.+|+.+
T Consensus 65 -~PilGI-n~G~~Gfl~-~~~-~~-------~~~~al~~i~~g~~~ 99 (258)
T 1yt5_A 65 -TPMVGF-KAGRLGFLT-SYT-LD-------EIDRFLEDLRNWNFR 99 (258)
T ss_dssp -CEEEEE-ESSSCCSSC-CBC-GG-------GHHHHHHHHHTTCCE
T ss_pred -CCEEEE-ECCCCCccC-cCC-HH-------HHHHHHHHHHcCCce
Confidence 344777 599996555 465 44 889999999998763
No 5
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.32 E-value=6.9e-13 Score=118.85 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=67.8
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChHHHHHH--------HHhCCCCCceEEEEEcCcchHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPEEALQW--------VSLMPSSGQTLILAAGGDGTAAWI 131 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~~~~~~--------~~~~~~~~~~~iv~~GGDGTl~~v 131 (316)
+++++|+||.++ .+.+.++++.+.|.+.+ +....+. +..+ ..+...+++|.||++|||||++++
T Consensus 6 kki~ii~np~~~--~~~~~~~~i~~~l~~~g~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l~a 79 (292)
T 2an1_A 6 KCIGIVGHPRHP--TALTTHEMLYRWLCDQGYEVIVEQQI----AHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGA 79 (292)
T ss_dssp CEEEEECC---------CHHHHHHHHHHHTTCEEEEEHHH----HHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHH
T ss_pred cEEEEEEcCCCH--HHHHHHHHHHHHHHHCCCEEEEecch----hhhcccccccccchhhcccCCCEEEEEcCcHHHHHH
Confidence 468999999864 34456777877776654 3221221 1110 000011237999999999999999
Q ss_pred HHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCC
Q psy16024 132 LNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKV 186 (316)
Q Consensus 132 ~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~ 186 (316)
++++...+ .|.||| |+||.|+|++ ++ +. ++.++++.+.+|+.
T Consensus 80 ~~~~~~~~---~P~lGI-~~Gt~gfla~-~~-~~-------~~~~al~~i~~g~~ 121 (292)
T 2an1_A 80 ARTLARYD---INVIGI-NRGNLGFLTD-LD-PD-------NALQQLSDVLEGRY 121 (292)
T ss_dssp HHHHTTSS---CEEEEB-CSSSCCSSCC-BC-TT-------SHHHHHHHHHTTCE
T ss_pred HHHhhcCC---CCEEEE-ECCCcccCCc-CC-HH-------HHHHHHHHHHcCCC
Confidence 99997652 344676 8999888876 44 44 89999999999876
No 6
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=99.22 E-value=7.2e-12 Score=112.93 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=71.2
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce--EEEcccCChH----------------HHHHHHH-hCCCCCceEEEEE
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ--VVDLADKSPE----------------EALQWVS-LMPSSGQTLILAA 122 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~--v~~~~t~~~~----------------~~~~~~~-~~~~~~~~~iv~~ 122 (316)
+++++|+||.++. +.+.++++.+.|...+ +....+.... +...+.+ +...+++|.||++
T Consensus 5 ~ki~iI~n~~~~~--~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~ 82 (307)
T 1u0t_A 5 RSVLLVVHTGRDE--ATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVL 82 (307)
T ss_dssp CEEEEEESSSGGG--GSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEE
T ss_pred CEEEEEEeCCCHH--HHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEE
Confidence 4689999998853 4456778888887654 3222222211 1111111 1233458999999
Q ss_pred cCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcc
Q psy16024 123 GGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAH 188 (316)
Q Consensus 123 GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~ 188 (316)
|||||++++++.+...+ .|.+|| +.||.|.++. +. +. ++.++++.+.+|+.+.
T Consensus 83 GGDGT~l~a~~~~~~~~---~pvlgi-~~G~~gfl~~-~~-~~-------~~~~~~~~i~~g~~~~ 135 (307)
T 1u0t_A 83 GGDGTFLRAAELARNAS---IPVLGV-NLGRIGFLAE-AE-AE-------AIDAVLEHVVAQDYRV 135 (307)
T ss_dssp ECHHHHHHHHHHHHHHT---CCEEEE-ECSSCCSSCS-EE-GG-------GHHHHHHHHHHTCCEE
T ss_pred eCCHHHHHHHHHhccCC---CCEEEE-eCCCCccCcc-cC-HH-------HHHHHHHHHHcCCcEE
Confidence 99999999999997652 244665 8999998885 43 33 8899999999987643
No 7
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=99.21 E-value=2e-11 Score=108.16 Aligned_cols=95 Identities=9% Similarity=0.096 Sum_probs=70.7
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCceEEEcccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLD 141 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~ 141 (316)
+++.+|+||. .++.+.++++.+.|+..++.. . .++.|.||++|||||+.++++.+....
T Consensus 1 mki~ii~n~~---~~~~~~~~~l~~~l~~~g~~v-~---------------~~~~D~vv~lGGDGT~l~aa~~~~~~~-- 59 (272)
T 2i2c_A 1 MKYMITSKGD---EKSDLLRLNMIAGFGEYDMEY-D---------------DVEPEIVISIGGDGTFLSAFHQYEERL-- 59 (272)
T ss_dssp CEEEEEECCS---HHHHHHHHHHHHHHTTSSCEE-C---------------SSSCSEEEEEESHHHHHHHHHHTGGGT--
T ss_pred CEEEEEECCC---HHHHHHHHHHHHHHHHCCCEe-C---------------CCCCCEEEEEcCcHHHHHHHHHHhhcC--
Confidence 3578899963 344566778888888766532 0 234799999999999999999987530
Q ss_pred CCCc-EEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 142 PAPS-VGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 142 ~~~~-lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
..+| +|| |.|| |+|+..+. +. +++++++.+.+|+.+
T Consensus 60 ~~~PilGI-n~G~-lgfl~~~~-~~-------~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 60 DEIAFIGI-HTGH-LGFYADWR-PA-------EADKLVKLLAKGEYQ 96 (272)
T ss_dssp TTCEEEEE-ESSS-CCSSCCBC-GG-------GHHHHHHHHHTTCCE
T ss_pred CCCCEEEE-eCCC-CCcCCcCC-HH-------HHHHHHHHHHcCCCE
Confidence 1356 666 9999 66888775 43 789999999998764
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=97.68 E-value=2.1e-05 Score=72.42 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=67.9
Q ss_pred CccccccccCCCCCCCCcchHHHHHhhcCCc--eEEEcccCChHHHHHHHHhC---------------------CCCCce
Q psy16024 61 DLWKLGRGNRKSGNGDGSHILSTFRRLLNPL--QVVDLADKSPEEALQWVSLM---------------------PSSGQT 117 (316)
Q Consensus 61 ~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v~~~~t~~~~~~~~~~~~~---------------------~~~~~~ 117 (316)
...++||.||.. ..+.+.+.++.+.|... ++..+.. +..+..+..+. ..++.|
T Consensus 41 ~k~V~II~n~~~--~~~~~~~~~l~~~L~~~~~gi~V~ve--~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 116 (388)
T 3afo_A 41 LQNVYITKKPWT--PSTREAMVEFITHLHESYPEVNVIVQ--PDVAEEISQDFKSPLENDPNRPHILYTGPEQDIVNRTD 116 (388)
T ss_dssp CCEEEEEECTTC--HHHHHHHHHHHHHHHHHCTTCEEECC--HHHHHHHHTTCCSCGGGCTTSCEEEEECCHHHHHHHCS
T ss_pred CcEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCeEEEEe--CchhhhhhhhccccccccccccccccccchhhcccCCC
Confidence 357999999863 33445566666666543 3322121 12222221111 011369
Q ss_pred EEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCcc
Q psy16024 118 LILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVAH 188 (316)
Q Consensus 118 ~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~~ 188 (316)
.||++|||||+..++..+...+ ..|.||| +.||-+-++ .+.. . +..++++.+.+|+...
T Consensus 117 lVIvlGGDGTlL~aa~~~~~~~--vpPiLGI-N~G~lGFLt-~~~~-~-------~~~~al~~il~g~~~~ 175 (388)
T 3afo_A 117 LLVTLGGDGTILHGVSMFGNTQ--VPPVLAF-ALGTLGFLS-PFDF-K-------EHKKVFQEVISSRAKC 175 (388)
T ss_dssp EEEEEESHHHHHHHHHTTTTSC--CCCEEEE-ECSSCCSSC-CEEG-G-------GHHHHHHHHHTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHhcccC--CCeEEEE-ECCCcccCC-cCCh-H-------HHHHHHHHHhcCCceE
Confidence 9999999999999998876542 1134555 999975444 4542 2 7889999999987543
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=96.67 E-value=0.0006 Score=59.83 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=56.1
Q ss_pred CCCCC--CccccccccCCCCCCCCcchHHHHHhhcCCceEEEc-ccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHH
Q psy16024 56 WASGV--DLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDL-ADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWIL 132 (316)
Q Consensus 56 ~~~g~--~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~-~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~ 132 (316)
|++|. .+++.|+.|+..- .+++.+.|+..++... ...... .+ ++.|.||++|||||+-.++
T Consensus 22 ~~~~~~~~mki~iv~~~~~~-------~~~l~~~L~~~g~~v~~~~~~~~-------~~--~~~DlvIvlGGDGT~L~aa 85 (278)
T 1z0s_A 22 FQGGGGGGMRAAVVYKTDGH-------VKRIEEALKRLEVEVELFNQPSE-------EL--ENFDFIVSVGGDGTILRIL 85 (278)
T ss_dssp --------CEEEEEESSSTT-------HHHHHHHHHHTTCEEEEESSCCG-------GG--GGSSEEEEEECHHHHHHHH
T ss_pred EcCCCccceEEEEEeCCcHH-------HHHHHHHHHHCCCEEEEcccccc-------cc--CCCCEEEEECCCHHHHHHH
Confidence 55544 6789999997543 4566666665543221 111111 11 1379999999999998777
Q ss_pred HHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHc
Q psy16024 133 NTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTR 183 (316)
Q Consensus 133 n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~ 183 (316)
..+.. . +|+--|..||-+=++. +. + .+..++++.+.+
T Consensus 86 ~~~~~----~-~PilGIN~G~lGFLt~-~~-~-------~~~~~~l~~l~~ 122 (278)
T 1z0s_A 86 QKLKR----C-PPIFGINTGRVGLLTH-AS-P-------ENFEVELKKAVE 122 (278)
T ss_dssp TTCSS----C-CCEEEEECSSSCTTCC-BB-T-------TBCHHHHHHHHH
T ss_pred HHhCC----C-CcEEEECCCCCccccc-cC-H-------HHHHHHHHHHHh
Confidence 55432 2 6666678887544442 22 1 266778888775
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=94.67 E-value=0.058 Score=48.99 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=41.1
Q ss_pred CceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhCCCCCCCCCCCCHHHHHHHHHccCCc
Q psy16024 115 GQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187 (316)
Q Consensus 115 ~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg~~~~~~~~~~~~~~~l~~l~~~~~~ 187 (316)
..|.||++|||||+-.++..+... .+|+--|-.|+ ||+=...+ ..+..++++.+.+|+..
T Consensus 108 ~~DlvI~lGGDGT~L~aa~~~~~~----~~PvlGiN~G~-------LGFLt~~~--~~~~~~~l~~vl~g~~~ 167 (365)
T 3pfn_A 108 QIDFIICLGGDGTLLYASSLFQGS----VPPVMAFHLGS-------LGFLTPFS--FENFQSQVTQVIEGNAA 167 (365)
T ss_dssp TCSEEEEESSTTHHHHHHHHCSSS----CCCEEEEESSS-------CTTTCCEE--STTHHHHHHHHHHSCCB
T ss_pred CCCEEEEEcChHHHHHHHHHhccC----CCCEEEEcCCC-------Cccceeec--HHHHHHHHHHHHcCCCe
Confidence 479999999999998888766443 35654455553 45422111 12788999999998754
No 11
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=89.16 E-value=1.6 Score=34.55 Aligned_cols=71 Identities=21% Similarity=0.434 Sum_probs=46.8
Q ss_pred cchHHHHHhhcCCceE----EEc-ccCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 78 SHILSTFRRLLNPLQV----VDL-ADKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~v----~~~-~t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
....++....|+.+++ ... ....|+...++++++..++.++ |.++|+.+-|--++.++-.. |.||+ |.
T Consensus 16 ~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~-----PVIgV-P~ 89 (163)
T 3ors_A 16 WKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTL-----PVIGV-PI 89 (163)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS-----CEEEE-EE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCC-----CEEEe-eC
Confidence 3455666666655432 222 2356888889999887766555 67779999999999998643 45554 44
Q ss_pred CCc
Q psy16024 152 GTG 154 (316)
Q Consensus 152 GTg 154 (316)
-++
T Consensus 90 ~~~ 92 (163)
T 3ors_A 90 ETK 92 (163)
T ss_dssp CCT
T ss_pred CCC
Confidence 343
No 12
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=87.36 E-value=2.6 Score=33.58 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=52.6
Q ss_pred CCccccccccCCCCCCCCcchHHHHHhhcCCceE----EEcc-cCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHH
Q psy16024 60 VDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQV----VDLA-DKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILN 133 (316)
Q Consensus 60 ~~~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v----~~~~-t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n 133 (316)
..+++.||.- +.......++....|+.+++ .... ...|+...++++++..++.++ |.++||.+-|--++.
T Consensus 11 ~~P~V~IimG----S~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA 86 (173)
T 4grd_A 11 SAPLVGVLMG----SSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLA 86 (173)
T ss_dssp SSCSEEEEES----SGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHH
T ss_pred CCCeEEEEeC----cHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhe
Confidence 3456666653 33333455555556655433 2222 345788889998887766665 667799999999999
Q ss_pred HHHcCCCCCCCcEEEecC
Q psy16024 134 TIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 134 ~l~~~~~~~~~~lgiiP~ 151 (316)
++-.. |.||+ |.
T Consensus 87 ~~t~~-----PVIgV-Pv 98 (173)
T 4grd_A 87 AKTTV-----PVLGV-PV 98 (173)
T ss_dssp HHCCS-----CEEEE-EE
T ss_pred ecCCC-----CEEEE-Ec
Confidence 98654 55666 54
No 13
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=83.52 E-value=1 Score=40.79 Aligned_cols=80 Identities=15% Similarity=0.099 Sum_probs=48.8
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEEccc-C-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLAD-K-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKL 140 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~t-~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~ 140 (316)
+++||..+.. ....+++.+.|+...++.-.. . ..+...+.++.+.+.+.|.||++|| |++.++.-.+...
T Consensus 39 rvliVtd~~~-----~~~~~~v~~~L~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK~iA~~-- 110 (364)
T 3iv7_A 39 KVMVIAGERE-----MSIAHKVASEIEVAIWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGG-GSTIGLAKAIAMT-- 110 (364)
T ss_dssp SEEEECCGGG-----HHHHHHHTTTSCCSEEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHHHHHH--
T ss_pred EEEEEECCCH-----HHHHHHHHHHcCCCEEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHhc--
Confidence 4666665531 134567777777544443211 1 2334444444444455799999999 9999988776543
Q ss_pred CCCCcEEEecC
Q psy16024 141 DPAPSVGIIPL 151 (316)
Q Consensus 141 ~~~~~lgiiP~ 151 (316)
..+|+..||.
T Consensus 111 -~~~P~i~IPT 120 (364)
T 3iv7_A 111 -TALPIVAIPT 120 (364)
T ss_dssp -HCCCEEEEEC
T ss_pred -cCCCEEEEcC
Confidence 2478888887
No 14
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=83.44 E-value=2.6 Score=33.41 Aligned_cols=71 Identities=17% Similarity=0.409 Sum_probs=46.9
Q ss_pred cchHHHHHhhcCCceE-EEc----ccCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 78 SHILSTFRRLLNPLQV-VDL----ADKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~v-~~~----~t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
....++....|+.+++ +++ ....|+...++++++..++.++ |.++|+.+-|--++.++-.. |.|| +|.
T Consensus 18 ~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t~~-----PVIg-VP~ 91 (166)
T 3oow_A 18 WSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKTTL-----PVLG-VPV 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTCSS-----CEEE-EEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhccCC-----CEEE-eec
Confidence 4456666666665543 222 1346888899999887765555 66789999999999987543 4455 455
Q ss_pred CCc
Q psy16024 152 GTG 154 (316)
Q Consensus 152 GTg 154 (316)
-++
T Consensus 92 ~~~ 94 (166)
T 3oow_A 92 KSS 94 (166)
T ss_dssp CCT
T ss_pred CcC
Confidence 443
No 15
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=82.83 E-value=2.9 Score=37.82 Aligned_cols=91 Identities=19% Similarity=0.281 Sum_probs=54.6
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCc--e--EEE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPL--Q--VVD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTI 135 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~--v~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l 135 (316)
.+++||..+.+-... ...+++.+.|+.. . ++. +... +.+...+.++.+.+.+.|.||++|| |++.++.-.+
T Consensus 41 ~~~liVtd~~~~~~~--g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~AK~i 117 (371)
T 1o2d_A 41 KRALVVTGKSSSKKN--GSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG-GSPMDFAKAV 117 (371)
T ss_dssp SEEEEEEESSGGGTS--SHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES-HHHHHHHHHH
T ss_pred CEEEEEECchHHhhc--cHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHH
Confidence 478888876443221 2456666666432 2 222 2222 3445556666666666899999998 8888887766
Q ss_pred HcCCCC---------------CCCcEEEecC--CCcc
Q psy16024 136 HNMKLD---------------PAPSVGIIPL--GTGN 155 (316)
Q Consensus 136 ~~~~~~---------------~~~~lgiiP~--GTgN 155 (316)
...-.. ..+|+..||. |||-
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgs 154 (371)
T 1o2d_A 118 AVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGS 154 (371)
T ss_dssp HHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCG
T ss_pred HHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchhh
Confidence 442111 4679999997 4543
No 16
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=81.09 E-value=1.4 Score=39.84 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=49.0
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceEEEcc--c-C-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLA--D-K-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~--t-~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
+++||..+.. ....+++.+.|+...+..+. . . ..+...+.++.+.+.+.|.||++|| |++.++.-.+...
T Consensus 38 r~liVtd~~~-----~~~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~aK~iA~~ 111 (358)
T 3jzd_A 38 RALVLCTPNQ-----QAEAERIADLLGPLSAGVYAGAVMHVPIESARDATARAREAGADCAVAVGG-GSTTGLGKAIALE 111 (358)
T ss_dssp CEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHHHHHH
T ss_pred eEEEEeCCcH-----HHHHHHHHHHhccCCEEEecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCC-cHHHHHHHHHHhc
Confidence 6777776642 23456777777765432211 1 1 2233444444444445799999999 9999988776543
Q ss_pred CCCCCCcEEEecC
Q psy16024 139 KLDPAPSVGIIPL 151 (316)
Q Consensus 139 ~~~~~~~lgiiP~ 151 (316)
..+|+..||.
T Consensus 112 ---~~~p~i~IPT 121 (358)
T 3jzd_A 112 ---TGMPIVAIPT 121 (358)
T ss_dssp ---HCCCEEEEEC
T ss_pred ---cCCCEEEEeC
Confidence 2478888887
No 17
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=81.08 E-value=1.6 Score=39.30 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=49.5
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceE--EEc-ccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQV--VDL-ADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v--~~~-~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
+++||..+.. ....+++.+.|+...+ +.- ... ..+...+.++.+.+.+.|.||++|| |++.++.-.+...
T Consensus 36 r~liVtd~~~-----~~~~~~v~~~L~~~~~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK~iA~~ 109 (353)
T 3hl0_A 36 RALVLSTPQQ-----KGDAEALASRLGRLAAGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGG-GSTTGLGKAIALR 109 (353)
T ss_dssp CEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHHHH
T ss_pred EEEEEecCch-----hhHHHHHHHHHhhCCcEEecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHHhc
Confidence 5777776542 2346677777776443 321 111 2234444444444445799999999 9999988776543
Q ss_pred CCCCCCcEEEecC
Q psy16024 139 KLDPAPSVGIIPL 151 (316)
Q Consensus 139 ~~~~~~~lgiiP~ 151 (316)
..+|+..||.
T Consensus 110 ---~~~p~i~IPT 119 (353)
T 3hl0_A 110 ---TDAAQIVIPT 119 (353)
T ss_dssp ---HCCEEEEEEC
T ss_pred ---cCCCEEEEeC
Confidence 2578888887
No 18
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=76.80 E-value=1.5 Score=38.97 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=37.0
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhh
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar 159 (316)
.+.++.+.+.+-|.++++|||||..-+. .|.+. .+++--||.==-||+.-
T Consensus 84 ~~~~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~----~i~vvgiPkTIDNDl~~ 133 (320)
T 1pfk_A 84 AVAIENLKKRGIDALVVIGGDGSYMGAM-RLTEM----GFPCIGLPGTIDNDIKG 133 (320)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHH-HHHHT----TCCEEEEEBCTTCCCTT
T ss_pred HHHHHHHHHcCCCEEEEECCCchHHHHH-HHHhh----CCCEEEEeccccCCCCC
Confidence 3444555555579999999999987654 55554 47888899999999973
No 19
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=76.43 E-value=6.7 Score=31.19 Aligned_cols=70 Identities=19% Similarity=0.402 Sum_probs=45.7
Q ss_pred cchHHHHHhhcCCceE----EEc-ccCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 78 SHILSTFRRLLNPLQV----VDL-ADKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~v----~~~-~t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
....++....|+.+++ ... ....|+...++++++..++.++ |.++||.+-|--++.++-.. |.||+ |.
T Consensus 24 ~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~-----PVIgV-P~ 97 (170)
T 1xmp_A 24 WETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNL-----PVIGV-PV 97 (170)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCCS-----CEEEE-EE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCC-----CEEEe-eC
Confidence 4455666666655433 222 2356888889998887765555 66789999999999887543 45554 44
Q ss_pred CC
Q psy16024 152 GT 153 (316)
Q Consensus 152 GT 153 (316)
-+
T Consensus 98 ~~ 99 (170)
T 1xmp_A 98 QS 99 (170)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 20
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=75.92 E-value=2.9 Score=33.42 Aligned_cols=71 Identities=18% Similarity=0.392 Sum_probs=45.1
Q ss_pred cchHHHHHhhcCCceE----EEc-ccCChHHHHHHHHhCCCCCce-EEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 78 SHILSTFRRLLNPLQV----VDL-ADKSPEEALQWVSLMPSSGQT-LILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~v----~~~-~t~~~~~~~~~~~~~~~~~~~-~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
....++....|+.+++ ... ....|+...++++++..++.+ .|.++|+.+-|--++.++-.. |.||+ |.
T Consensus 20 ~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~-----PVIgV-P~ 93 (174)
T 3lp6_A 20 WPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATPL-----PVIGV-PV 93 (174)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHCSS-----CEEEE-EE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhccCC-----CEEEe-eC
Confidence 4455666666655432 222 234678888888776554444 477789999999999998643 45554 54
Q ss_pred CCc
Q psy16024 152 GTG 154 (316)
Q Consensus 152 GTg 154 (316)
-++
T Consensus 94 ~~~ 96 (174)
T 3lp6_A 94 PLG 96 (174)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 21
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=74.08 E-value=4 Score=37.06 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=52.2
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc--eE--EE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL--QV--VD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v--~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++|+..+...... ....+++.+.|+.. .+ +. +... +.....+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 35 ~~livtd~~~~~~~-~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 112 (387)
T 3bfj_A 35 KALLVTDKGLRAIK-DGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDCGKGIG 112 (387)
T ss_dssp EEEEECCTTTC--C-CSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHHHH
T ss_pred EEEEEECcchhhcc-chHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhHHHHHH
Confidence 67777776543220 01456666666532 22 21 1111 2344445555554455799999998 88888877654
Q ss_pred cC---C------------CCCCCcEEEecC--CCcchh
Q psy16024 137 NM---K------------LDPAPSVGIIPL--GTGNDL 157 (316)
Q Consensus 137 ~~---~------------~~~~~~lgiiP~--GTgNd~ 157 (316)
.. + ....+|+..||. |||--.
T Consensus 113 ~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgSev 150 (387)
T 3bfj_A 113 IAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTASEV 150 (387)
T ss_dssp HHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCCGGG
T ss_pred HHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCccccc
Confidence 31 0 013579999998 555433
No 22
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=72.91 E-value=2.8 Score=37.53 Aligned_cols=80 Identities=10% Similarity=0.027 Sum_probs=52.0
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc--eE--EE-cccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHc
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL--QV--VD-LADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHN 137 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v--~~-~~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~ 137 (316)
+++||..+..-. ...+++.+.|+.. .+ +. ....+.+...+. +.+.+.+.|.||++|| |++.++.-.+.-
T Consensus 36 ~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGG-Gsv~D~aK~vA~ 109 (354)
T 3ce9_A 36 RVSLYFGEGIYE----LFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGG-GKAIDAVKYMAF 109 (354)
T ss_dssp EEEEEEETTHHH----HHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEES-HHHHHHHHHHHH
T ss_pred eEEEEECccHHH----HHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECC-hHHHHHHHHHHh
Confidence 678887764432 2456677777543 22 32 222234555666 6666667899999998 888888877653
Q ss_pred CCCCCCCcEEEecC
Q psy16024 138 MKLDPAPSVGIIPL 151 (316)
Q Consensus 138 ~~~~~~~~lgiiP~ 151 (316)
. ..+|+..||.
T Consensus 110 ~---~~~p~i~IPT 120 (354)
T 3ce9_A 110 L---RKLPFISVPT 120 (354)
T ss_dssp H---HTCCEEEEES
T ss_pred h---cCCCEEEecC
Confidence 2 2578999998
No 23
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=72.73 E-value=1.5 Score=38.83 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhh
Q psy16024 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar 159 (316)
.-.+.++.+.+.+-|.++++|||||+.-+. .|.+. .+++--||.==-||+.-
T Consensus 81 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~----~i~vvgiPkTIDNDl~~ 132 (319)
T 1zxx_A 81 GQLAGIEQLKKHGIDAVVVIGGDGSYHGAL-QLTRH----GFNSIGLPGTIDNDIPY 132 (319)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECHHHHHHHH-HHHHT----TCCEEEEEEETTCCCTT
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHHH-HHHHh----CCCEEEEeecccCCCCC
Confidence 334445555555579999999999986544 55544 47888899988899873
No 24
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=72.35 E-value=7.3 Score=31.07 Aligned_cols=66 Identities=18% Similarity=0.330 Sum_probs=44.8
Q ss_pred cchHHHHHhhcCCceE----EEc-ccCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHHHHHcCCCCCCCcEEE
Q psy16024 78 SHILSTFRRLLNPLQV----VDL-ADKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILNTIHNMKLDPAPSVGI 148 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~v----~~~-~t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n~l~~~~~~~~~~lgi 148 (316)
....++....|+.+++ ... ....|+...++++++..++.++ |.++|+.+-|--++.++-.. |.||+
T Consensus 25 ~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~-----PVIgV 96 (174)
T 3kuu_A 25 WATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKTLV-----PVLGV 96 (174)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTCSS-----CEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhccCC-----CEEEe
Confidence 4455666666655432 222 2356888899999887766555 67779999999999987543 45565
No 25
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=71.73 E-value=8.5 Score=30.96 Aligned_cols=75 Identities=19% Similarity=0.480 Sum_probs=48.8
Q ss_pred CCCCCcchHHHHHhhcCCceE-EE---c-ccCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHHHHHcCCCCCCCcE
Q psy16024 73 GNGDGSHILSTFRRLLNPLQV-VD---L-ADKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILNTIHNMKLDPAPSV 146 (316)
Q Consensus 73 G~~~~~~~~~~~~~~l~~~~v-~~---~-~t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n~l~~~~~~~~~~l 146 (316)
|+.......++....|+.+++ ++ . ....|+...++++++..++.++ |.++|+.+-|--++.++-.. |.|
T Consensus 21 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~-----PVI 95 (183)
T 1o4v_A 21 GSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHL-----PVI 95 (183)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSS-----CEE
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccCC-----CEE
Confidence 333334456666666665443 22 2 2356888889999887765555 66789999999999998643 445
Q ss_pred EEecCCC
Q psy16024 147 GIIPLGT 153 (316)
Q Consensus 147 giiP~GT 153 (316)
| +|.-+
T Consensus 96 g-VP~~~ 101 (183)
T 1o4v_A 96 G-VPVKT 101 (183)
T ss_dssp E-EEECC
T ss_pred E-eeCCC
Confidence 4 45544
No 26
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=70.87 E-value=1.4 Score=41.41 Aligned_cols=51 Identities=29% Similarity=0.358 Sum_probs=36.1
Q ss_pred HHHHhCCCCCceEEEEEcCcchHHHHH---HHHHcCCCCCCCcEEEecCCCcchhh
Q psy16024 106 QWVSLMPSSGQTLILAAGGDGTAAWIL---NTIHNMKLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 106 ~~~~~~~~~~~~~iv~~GGDGTl~~v~---n~l~~~~~~~~~~lgiiP~GTgNd~A 158 (316)
++++.+.+.+.|.++++|||||..-+. +.+.+. ...+++--||.==-||+.
T Consensus 180 ~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~--g~~i~vVGIPkTIDNDl~ 233 (487)
T 2hig_A 180 EMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRR--GVDISVFGVPKTIDNDLS 233 (487)
T ss_dssp HHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHH--TCCCEEEEEECCTTSSCC
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHh--CCCceEEeccccccCCCC
Confidence 445555555679999999999987443 222232 235789999999999996
No 27
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=70.56 E-value=8.9 Score=35.03 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=53.0
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCceEEEcc---c-CChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHc
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLA---D-KSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHN 137 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v~~~~---t-~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~ 137 (316)
.+++||..+.+-.. ....+++.+.|+...+..+. . ...+...+.++.+.+.+.|.||++|| |++.++.-.+..
T Consensus 51 ~r~liVtd~~~~~~--~g~~~~v~~~L~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~iA~ 127 (408)
T 1oj7_A 51 ARVLITYGGGSVKK--TGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG-GSVLDGTKFIAA 127 (408)
T ss_dssp CEEEEEECSSHHHH--HSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES-HHHHHHHHHHHH
T ss_pred CEEEEEECCchhhh--ccHHHHHHHHhCCCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHHHHH
Confidence 46777775532111 11466777777633332221 1 12234444444444445799999998 888888776643
Q ss_pred C---C---------------CCCCCcEEEecC--CCcchh
Q psy16024 138 M---K---------------LDPAPSVGIIPL--GTGNDL 157 (316)
Q Consensus 138 ~---~---------------~~~~~~lgiiP~--GTgNd~ 157 (316)
. + ....+|+..||. |||=..
T Consensus 128 ~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtgSev 167 (408)
T 1oj7_A 128 AANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSES 167 (408)
T ss_dssp HTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGGG
T ss_pred HHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchhHHh
Confidence 2 0 014579999998 665443
No 28
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=70.36 E-value=9.4 Score=30.02 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=40.7
Q ss_pred cchHHHHHhhcCCceE-EE---c-ccCChHHHHHHHHhCCCC-CceE-EEEEcCcchHHHHHHHHHcC
Q psy16024 78 SHILSTFRRLLNPLQV-VD---L-ADKSPEEALQWVSLMPSS-GQTL-ILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~v-~~---~-~t~~~~~~~~~~~~~~~~-~~~~-iv~~GGDGTl~~v~n~l~~~ 138 (316)
....++....|+.+++ ++ . ....|+...++++++..+ +.++ |.++|+.+-|--++.++-..
T Consensus 15 ~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~~ 82 (159)
T 3rg8_A 15 MGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVKG 82 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccCC
Confidence 4455666666665443 22 2 134678888888877653 3454 67779999999999998653
No 29
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=69.85 E-value=9.7 Score=30.59 Aligned_cols=81 Identities=17% Similarity=0.291 Sum_probs=51.0
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCceE----EEc-ccCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQV----VDL-ADKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v----~~~-~t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n~l~ 136 (316)
.+.||. |+.......++....|+.+++ ... ....|+...++++++..++.++ |.++||.+-|--++.++-
T Consensus 23 ~V~Iim----GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 98 (182)
T 1u11_A 23 VVGIIM----GSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAWT 98 (182)
T ss_dssp SEEEEE----SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHC
T ss_pred EEEEEE----CcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhcc
Confidence 455554 333334455666666655433 222 2356888889998887765555 667799999999999986
Q ss_pred cCCCCCCCcEEEecCCC
Q psy16024 137 NMKLDPAPSVGIIPLGT 153 (316)
Q Consensus 137 ~~~~~~~~~lgiiP~GT 153 (316)
.. |.||+ |.-+
T Consensus 99 ~~-----PVIgV-P~~~ 109 (182)
T 1u11_A 99 RL-----PVLGV-PVES 109 (182)
T ss_dssp SS-----CEEEE-EECC
T ss_pred CC-----CEEEe-eCCC
Confidence 53 45554 4433
No 30
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=68.46 E-value=9 Score=30.72 Aligned_cols=60 Identities=13% Similarity=0.263 Sum_probs=41.9
Q ss_pred CcchHHHHHhhcCCceE----EEcc-cCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHHHHH
Q psy16024 77 GSHILSTFRRLLNPLQV----VDLA-DKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 77 ~~~~~~~~~~~l~~~~v----~~~~-t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n~l~ 136 (316)
.....++..+.|+.+++ .... ...|+...++++++..++.++ |.++||.+-|--++.++-
T Consensus 34 D~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T 99 (181)
T 4b4k_A 34 DWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 99 (181)
T ss_dssp GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcC
Confidence 34456666666765543 2222 346888889999988777665 667899999999998754
No 31
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=63.85 E-value=4.7 Score=36.38 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=50.1
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCc-eE--EEccc----CChHHHHHHH---HhCCCCCceEEEEEcCcchHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPL-QV--VDLAD----KSPEEALQWV---SLMPSSGQTLILAAGGDGTAAWI 131 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~-~v--~~~~t----~~~~~~~~~~---~~~~~~~~~~iv~~GGDGTl~~v 131 (316)
.+++||.++.... ...+++.+.|+.. .+ +.+.. ...+...++. ++..-.+.|.||++|| |++.++
T Consensus 35 ~k~liVtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG-Gsv~D~ 109 (368)
T 2gru_A 35 DQYIMISDSGVPD----SIVHYAAEYFGKLAPVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG-GLTGNV 109 (368)
T ss_dssp SEEEEEEETTSCH----HHHHHHHHHHTTTSCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES-HHHHHH
T ss_pred CEEEEEECCcHHH----HHHHHHHHHHHhccceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC-hHHHHH
Confidence 4788888875442 2456677777543 22 22211 1223333333 4433233699999998 899998
Q ss_pred HHHHHcCCCCCCCcEEEecC
Q psy16024 132 LNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 132 ~n~l~~~~~~~~~~lgiiP~ 151 (316)
.-.+...- ...+|+..||.
T Consensus 110 ak~~Aa~~-~rgip~i~IPT 128 (368)
T 2gru_A 110 AGVAAGMM-FRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHB-TTCCEEEEEEC
T ss_pred HHHHHHHh-cCCCCEEEECC
Confidence 87765321 23589999998
No 32
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=63.78 E-value=3.1 Score=36.90 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=33.8
Q ss_pred HHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhh
Q psy16024 108 VSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 108 ~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~A 158 (316)
++.+.+.+.|.++++|||||...+ +.|.+. .+++--||-==-||+.
T Consensus 86 ~~~l~~~~Id~L~~IGGdgS~~~a-~~l~~~----~i~vigiPkTIDNDl~ 131 (319)
T 4a3s_A 86 IANLKKLGIEGLVVIGGDGSYMGA-KKLTEH----GFPCVGVPGTIDNDIP 131 (319)
T ss_dssp HHHHHHHTCCEEEEEECTTHHHHH-HHHHHT----TCCEEEEEEETTCCCT
T ss_pred HHHHHHcCCCEEEEeCCcHHHHHH-HHHhcc----CCcEEEeeccccCCCC
Confidence 333333457899999999998764 456554 4788889988889986
No 33
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=63.21 E-value=9.8 Score=30.21 Aligned_cols=68 Identities=25% Similarity=0.342 Sum_probs=44.3
Q ss_pred cchHHHHHhhcCCceE----EEc-ccCChHHHHHHHHhCCCCCceE-EEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 78 SHILSTFRRLLNPLQV----VDL-ADKSPEEALQWVSLMPSSGQTL-ILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~v----~~~-~t~~~~~~~~~~~~~~~~~~~~-iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
....++....|+.+++ ... ....|+...++++++..++.++ |.++|+.+-|--++.++-.. |.||+ |.
T Consensus 19 ~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~-----PVIgV-P~ 92 (169)
T 3trh_A 19 LSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAHTLK-----PVIGV-PM 92 (169)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHTCSS-----CEEEE-EC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcCCC-----CEEEe-ec
Confidence 3455666666655432 222 2346788888888776555554 67779999999999987543 45555 44
No 34
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=62.11 E-value=16 Score=28.66 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=39.4
Q ss_pred cchHHHHHhhcCCce----EEEc-ccCChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHc
Q psy16024 78 SHILSTFRRLLNPLQ----VVDL-ADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHN 137 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~----v~~~-~t~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~ 137 (316)
....++....|+.++ +... ....|+...++++++.. .-.|.++|+.+-|--++.++-.
T Consensus 12 ~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~--~ViIa~AG~aa~Lpgvva~~t~ 74 (157)
T 2ywx_A 12 LKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA--DVFIAIAGLAAHLPGVVASLTT 74 (157)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCC--SEEEEEEESSCCHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCC--CEEEEEcCchhhhHHHHHhccC
Confidence 345555555665443 2222 23567888888887765 3578889999999999988754
No 35
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=60.03 E-value=3 Score=38.06 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=46.9
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCceE---EE-ccc-CChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQV---VD-LAD-KSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v---~~-~~t-~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
.+++||..+..-+ ...+++.+.|+. ++ ++ +.. .......+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 53 ~r~liVtd~~~~~----~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~AK~iA 126 (387)
T 3uhj_A 53 KRALVLIDRVLFD----ALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGG-GKTADTAKIVA 126 (387)
T ss_dssp SEEEEEECTTTHH----HHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESS-HHHHHHHHHHH
T ss_pred CEEEEEECchHHH----HHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHHH
Confidence 4688887765432 255667777765 32 22 221 22344444444444445799999999 99999887765
Q ss_pred cCCCCCCCcEEEecC
Q psy16024 137 NMKLDPAPSVGIIPL 151 (316)
Q Consensus 137 ~~~~~~~~~lgiiP~ 151 (316)
-. ..+|+..||.
T Consensus 127 ~~---~~~p~i~IPT 138 (387)
T 3uhj_A 127 ID---TGARIVIAPT 138 (387)
T ss_dssp HH---TTCEEEECCS
T ss_pred Hh---cCCCEEEecC
Confidence 33 2588999998
No 36
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=59.89 E-value=7.6 Score=35.20 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=50.7
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCce----EEE-ccc-CChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPLQ----VVD-LAD-KSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~~----v~~-~~t-~~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++||..+.-. .....+++.+.|+..+ ++. +.. .+.+...+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 33 ~~liVtd~~~~---~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gsv~D~aK~ia 108 (383)
T 3ox4_A 33 NALIVSDAFMN---KSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGG-GSPHDCAKAIA 108 (383)
T ss_dssp EEEEEEEHHHH---HTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHHHH
T ss_pred EEEEEECCchh---hCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHHHHH
Confidence 57777765311 1124567777776542 222 222 22334444444444445799999999 88888876653
Q ss_pred cC---C------------CCCCCcEEEecC--CCcc
Q psy16024 137 NM---K------------LDPAPSVGIIPL--GTGN 155 (316)
Q Consensus 137 ~~---~------------~~~~~~lgiiP~--GTgN 155 (316)
.. + ..+.+|+..||. |||-
T Consensus 109 ~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 144 (383)
T 3ox4_A 109 LVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTAS 144 (383)
T ss_dssp HHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCT
T ss_pred HHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchh
Confidence 21 0 023579999998 5543
No 37
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=57.66 E-value=4.7 Score=38.57 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=36.3
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC--CCCCCCcEEEecCCCcchhh
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM--KLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~--~~~~~~~lgiiP~GTgNd~A 158 (316)
.++++.+...+-|.+|++|||||...+.. |.+. .....+++--||.==-||++
T Consensus 156 ~~~~~~l~~~~Id~LvvIGGdgS~~~A~~-L~e~~~~~~~~i~vIGiPkTIDNDl~ 210 (555)
T 2f48_A 156 NKALFVAKENNLNAIIIIGGDDSNTNAAI-LAEYFKKNGENIQVIGVPKTIDADLR 210 (555)
T ss_dssp HHHHHHHHHTTCSEEEEEESHHHHHHHHH-HHHHHHHTTCCCEEEEEEEETTCCCC
T ss_pred HHHHHHHHHcCCCEEEEeCCCcHHHHHHH-HHHHHHHhCCCCcEEEeccccCCCCC
Confidence 34455555556799999999999765442 3221 11335889999998899996
No 38
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=54.08 E-value=12 Score=34.32 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=38.5
Q ss_pred hHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC--CCCCCCcEEEecCCCcchhh
Q psy16024 101 PEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM--KLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~--~~~~~~~lgiiP~GTgNd~A 158 (316)
++.-.++++.+.+.+-|.++++|||||+..+. .|.+. .....+++--||-==-||+.
T Consensus 90 ~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~-~L~~~~~~~g~~i~vIGiPkTIDNDl~ 148 (419)
T 3hno_A 90 RREYERLIEVFKAHDIGYFFYNGGGDSADTCL-KVSQLSGTLGYPIQAIHVPKTVDNDLP 148 (419)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEESHHHHHHHH-HHHHHHHHTTCCCEEEEEECCTTCCCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHH-HHHHHHHHhCCCccEEEecccccCCCc
Confidence 34444555556556689999999999986543 33321 11235788889988889995
No 39
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=53.22 E-value=11 Score=34.33 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=31.4
Q ss_pred ceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC--CCcchhh
Q psy16024 116 QTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL--GTGNDLS 158 (316)
Q Consensus 116 ~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~--GTgNd~A 158 (316)
.|.||++|| |++.++.-.+...- ...+|+..||. ||+.|-+
T Consensus 106 ~d~iIalGG-Gsv~D~ak~~Aa~~-~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 106 DTVVIALGG-GVIGDLTGFVASTY-MRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp TCEEEEEES-HHHHHHHHHHHHHG-GGCCEEEEEECSHHHHHTTT
T ss_pred CCEEEEECC-cHHHHHHHHHHHHh-cCCCCEEEECCchhhhhhcC
Confidence 499999998 88888887665321 12589999999 8888874
No 40
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=49.67 E-value=22 Score=32.72 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=41.6
Q ss_pred cchHHHHHhhcCCceE----EEc-ccCChHHHHHHHHhCCCCCc--eEEEEEcCcchHHHHHHHHHcC
Q psy16024 78 SHILSTFRRLLNPLQV----VDL-ADKSPEEALQWVSLMPSSGQ--TLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 78 ~~~~~~~~~~l~~~~v----~~~-~t~~~~~~~~~~~~~~~~~~--~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
....++....|+.+++ ... ....|+...++++++..++. -.|.++||.|.|--|+.++...
T Consensus 278 ~~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva~~t~~ 345 (425)
T 2h31_A 278 LGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAY 345 (425)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHhccCCC
Confidence 3455566666655432 222 23467888889888777666 3577789999999999998653
No 41
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=48.27 E-value=13 Score=33.72 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=49.3
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCc--eE--EEccc----CChHHHHHHH---HhCCCCCceEEEEEcCcchHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPL--QV--VDLAD----KSPEEALQWV---SLMPSSGQTLILAAGGDGTAAW 130 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v--~~~~t----~~~~~~~~~~---~~~~~~~~~~iv~~GGDGTl~~ 130 (316)
.+++||.++.... ...+++.+.|+.. .+ +.+.. .+.....++. ++....+.|.||++|| |++.+
T Consensus 63 ~rvlIVtd~~v~~----~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG-Gsv~D 137 (390)
T 3okf_A 63 QKVVIVTNHTVAP----LYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG-GVIGD 137 (390)
T ss_dssp CEEEEEEETTTHH----HHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHH
T ss_pred CEEEEEECCcHHH----HHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC-cHHhh
Confidence 4788888875432 2556677777643 22 22211 1223333333 3333333489999998 89999
Q ss_pred HHHHHHcCCCCCCCcEEEecC
Q psy16024 131 ILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 131 v~n~l~~~~~~~~~~lgiiP~ 151 (316)
+.-.+.... ...+|+..||.
T Consensus 138 ~ak~~Aa~~-~rgip~I~IPT 157 (390)
T 3okf_A 138 LVGFAAACY-QRGVDFIQIPT 157 (390)
T ss_dssp HHHHHHHHB-TTCCEEEEEEC
T ss_pred HHHHHHHHh-cCCCCEEEeCC
Confidence 887664221 23588999998
No 42
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=47.86 E-value=27 Score=31.45 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=29.7
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCC---------------CCCCCcEEEecC
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMK---------------LDPAPSVGIIPL 151 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~---------------~~~~~~lgiiP~ 151 (316)
.+.+++....+.|.||++|| |++.++.-.+...- ..+.+|+..||.
T Consensus 99 ~~~~~~~~~~~~D~IIavGG-GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 159 (375)
T 3rf7_A 99 TAQVKAFNTKLPVSVVGLGG-GSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT 159 (375)
T ss_dssp HHHHHHHCSSCCSEEEEEES-HHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES
T ss_pred HHHHHHhCCCCCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC
Confidence 34444433223799999999 88888877663310 012578999997
No 43
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=47.74 E-value=17 Score=33.16 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=51.1
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc--eEEEcc---cC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL--QVVDLA---DK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v~~~~---t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++||..+.+-.. ....+++.+.|+.. .+..+. .. ......+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 45 r~liVtd~~~~~~--~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~iA 121 (407)
T 1vlj_A 45 KVLFLYGGGSIKK--NGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG-GSVVDSAKAVA 121 (407)
T ss_dssp EEEEEECSSHHHH--SSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHH
T ss_pred eEEEEECchHHhh--ccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hhHHHHHHHHH
Confidence 6777775332111 11456666666532 222111 11 2244445555544455799999998 88888877664
Q ss_pred cCC---------------CCCCCcEEEecC--CCcchh
Q psy16024 137 NMK---------------LDPAPSVGIIPL--GTGNDL 157 (316)
Q Consensus 137 ~~~---------------~~~~~~lgiiP~--GTgNd~ 157 (316)
..- ....+|+..||. |||=-.
T Consensus 122 ~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgSev 159 (407)
T 1vlj_A 122 AGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTEM 159 (407)
T ss_dssp HHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCGGG
T ss_pred HHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcchhh
Confidence 320 014579999997 554433
No 44
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=44.25 E-value=40 Score=30.18 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=49.5
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCceE-EEc-ccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQV-VDL-ADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM 138 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v-~~~-~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~ 138 (316)
.+++||..+..-.. ...+++.+.|+..++ +.+ .-+ ......+.++.+.+ +.|.||++|| |++.++.-.+.-.
T Consensus 42 ~~~liVtd~~~~~~---~~~~~v~~~L~~~g~~~~~~~ge~~~~~v~~~~~~~~~-~~d~IIavGG-Gsv~D~aK~iA~~ 116 (376)
T 1kq3_A 42 ERAFVVIDDFVDKN---VLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEE-ETDVVVGIGG-GKTLDTAKAVAYK 116 (376)
T ss_dssp SEEEEEECHHHHHH---TTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTCCT-TCCEEEEEES-HHHHHHHHHHHHH
T ss_pred CeEEEEECccHHhh---ccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHhc-CCCEEEEeCC-cHHHHHHHHHHHh
Confidence 36777776532111 013456666765432 112 222 22345555555555 6899999998 8998888776542
Q ss_pred CCCCCCcEEEecC
Q psy16024 139 KLDPAPSVGIIPL 151 (316)
Q Consensus 139 ~~~~~~~lgiiP~ 151 (316)
..+|+..||.
T Consensus 117 ---~~~p~i~IPT 126 (376)
T 1kq3_A 117 ---LKKPVVIVPT 126 (376)
T ss_dssp ---TTCCEEEEES
T ss_pred ---cCCCEEEecC
Confidence 2578999997
No 45
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=43.94 E-value=9.2 Score=34.37 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=49.6
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCc--eE-EEc-ccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPL--QV-VDL-ADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v-~~~-~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
.+++||..+..-. ...+++.+.|+.. .+ +.+ ..+ +.....+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 32 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 106 (370)
T 1jq5_A 32 NKTVVIADEIVWK----IAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG-GKTLDTAKAVA 106 (370)
T ss_dssp SEEEEEECHHHHH----HTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHH
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHHH
Confidence 3677887765432 2456677777543 22 112 112 2234444444444445799999998 88888887765
Q ss_pred cCCCCCCCcEEEecC
Q psy16024 137 NMKLDPAPSVGIIPL 151 (316)
Q Consensus 137 ~~~~~~~~~lgiiP~ 151 (316)
-. ..+|+..||.
T Consensus 107 ~~---~~~p~i~IPT 118 (370)
T 1jq5_A 107 DE---LDAYIVIVPT 118 (370)
T ss_dssp HH---HTCEEEEEES
T ss_pred Hh---cCCCEEEecc
Confidence 32 2578999997
No 46
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=43.70 E-value=18 Score=33.58 Aligned_cols=80 Identities=16% Similarity=0.066 Sum_probs=50.1
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc--eE-EEc-ccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHc
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL--QV-VDL-ADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHN 137 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v-~~~-~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~ 137 (316)
+++||..+..-. ...+++.+.|+.. .+ +.+ .-+ ......+..+.+.+ +.|.||++|| |++.++.-.+.-
T Consensus 93 rvlIVtd~~~~~----~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGG-GSviD~AK~iA~ 166 (450)
T 1ta9_A 93 SAVVLADQNVWN----ICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGG-GKTMDSAKYIAH 166 (450)
T ss_dssp EEEEEEEHHHHH----HTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEES-HHHHHHHHHHHH
T ss_pred EEEEEECccHHH----HHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCC-cHHHHHHHHHHH
Confidence 677777664432 2456666666432 22 111 222 23355566665555 7899999998 888888877653
Q ss_pred CCCCCCCcEEEecC
Q psy16024 138 MKLDPAPSVGIIPL 151 (316)
Q Consensus 138 ~~~~~~~~lgiiP~ 151 (316)
. ..+|+..||.
T Consensus 167 ~---~giP~I~IPT 177 (450)
T 1ta9_A 167 S---MNLPSIICPT 177 (450)
T ss_dssp H---TTCCEEEEES
T ss_pred h---cCCCEEEEeC
Confidence 2 2578999997
No 47
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=37.21 E-value=21 Score=36.28 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=37.2
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCC---CCCCcEEEecCCCcchhhh
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKL---DPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~---~~~~~lgiiP~GTgNd~Ar 159 (316)
.++++.+.+.+.|.+|++|||||+.-+. .|.+... ...+++--||.=--||+.-
T Consensus 652 ~~i~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~~~~~~~i~vVGIPkTIDNDl~g 708 (941)
T 3opy_B 652 GMIAYFFEKYGFDGLILVGGFEAFISLH-QLERARINYPSLRIPLVLIPATISNNVPG 708 (941)
T ss_dssp HHHHHHHHHTTCSEEEEEESHHHHHHHH-HHHHGGGTCGGGCSCEEEEEBCSSCCCTT
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHH-HHHHHHHhcCccCCcEEeeeccccCCCCC
Confidence 3455555555679999999999986544 4433210 1257888999999999863
No 48
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=36.70 E-value=27 Score=31.39 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=50.2
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcCCc--eE--EE-cccC-ChHHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHH
Q psy16024 63 WKLGRGNRKSGNGDGSHILSTFRRLLNPL--QV--VD-LADK-SPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIH 136 (316)
Q Consensus 63 ~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v--~~-~~t~-~~~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~ 136 (316)
+++||..+.... ....+++.+.|+.. .+ +. +... +.....+.++.+.+.+.|.||++|| |++.++.-.+.
T Consensus 33 ~~livtd~~~~~---~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 108 (386)
T 1rrm_A 33 KALIVTDKTLVQ---CGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG-GSPQDTCKAIG 108 (386)
T ss_dssp EEEEECBHHHHH---TTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHHHH
T ss_pred EEEEEECcchhh---chHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHHHHH
Confidence 567776553321 12456666666532 22 22 1111 2344455555554455799999998 88888776653
Q ss_pred cC---CC--------------CCCCcEEEecC--CCcc
Q psy16024 137 NM---KL--------------DPAPSVGIIPL--GTGN 155 (316)
Q Consensus 137 ~~---~~--------------~~~~~lgiiP~--GTgN 155 (316)
.. +. .+.+|+..||. |||-
T Consensus 109 ~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgS 146 (386)
T 1rrm_A 109 IISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAA 146 (386)
T ss_dssp HHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCT
T ss_pred HHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCchh
Confidence 21 10 23579999998 5543
No 49
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=36.52 E-value=8.8 Score=24.90 Aligned_cols=12 Identities=17% Similarity=-0.042 Sum_probs=10.5
Q ss_pred eEEEEEcCcchH
Q psy16024 117 TLILAAGGDGTA 128 (316)
Q Consensus 117 ~~iv~~GGDGTl 128 (316)
.-|+|++||||+
T Consensus 39 tGViVg~~dgtv 50 (65)
T 2x9a_A 39 SGIGIGYDNDTS 50 (65)
T ss_dssp EEEEEEETTTTE
T ss_pred eeEEEECCCCCE
Confidence 469999999997
No 50
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=36.48 E-value=15 Score=36.46 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCCCceEEEEEcCcchHHHHHHHH---HcCCCCCCCcEEEecCCCcchhhh
Q psy16024 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTI---HNMKLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l---~~~~~~~~~~lgiiP~GTgNd~Ar 159 (316)
...++++.+.+.+-|.++++|||||+.-+..-. ...+ ...+|+--||.=--||+.-
T Consensus 477 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~-~~~i~vvgiPkTIDNDl~g 535 (762)
T 3o8l_A 477 SFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFD-ELCIPFVVIPATVSNNVPG 535 (762)
T ss_dssp GHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCS-TTCSCEEEEEBCTTCCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcc-ccCCCEEeeccccCCCCCC
Confidence 344555555555679999999999987664321 1111 1257888899999999963
No 51
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=36.30 E-value=31 Score=27.63 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=26.3
Q ss_pred EEEcCcchHHHHHHHHHcCCCCCCCcEEEecCCCcchhhhhhC
Q psy16024 120 LAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG 162 (316)
Q Consensus 120 v~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~GTgNd~Ar~lg 162 (316)
..+|||-|- +++.-+...-...+|-+-+|=+|| ||+++..+
T Consensus 56 ~Gi~G~tt~-~~l~r~~~~v~~~~Pd~vvi~~G~-ND~~~~~~ 96 (209)
T 4hf7_A 56 RGISGQTSY-QFLLRFREDVINLSPALVVINAGT-NDVAENTG 96 (209)
T ss_dssp EECTTCCHH-HHHHHHHHHTGGGCCSEEEECCCH-HHHTTSSS
T ss_pred eccCcccHH-HHHHHHHHHHHhcCCCEEEEEeCC-CcCccccc
Confidence 467999664 455544331112357788999998 99887554
No 52
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
Probab=35.95 E-value=13 Score=31.69 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=12.3
Q ss_pred ceEEEEEcCcchHHH
Q psy16024 116 QTLILAAGGDGTAAW 130 (316)
Q Consensus 116 ~~~iv~~GGDGTl~~ 130 (316)
-.+||+|||+||-+.
T Consensus 46 ~q~~i~~g~~~t~~~ 60 (275)
T 3gw6_A 46 GQRIIFCGGEGTSST 60 (275)
T ss_dssp GCEEEEESSSSSSTT
T ss_pred ccEEEEecCCCCCCC
Confidence 468999999999643
No 53
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=35.20 E-value=58 Score=28.82 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=45.9
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCce-E--EEcc---c-CChHHHHHHHHhCCCCC---ceEEEEEcCcchHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQ-V--VDLA---D-KSPEEALQWVSLMPSSG---QTLILAAGGDGTAAWI 131 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~-v--~~~~---t-~~~~~~~~~~~~~~~~~---~~~iv~~GGDGTl~~v 131 (316)
.+++||.++... ....+++.+.| ..+ + +.+. . .+.....++.+.+.+.+ .|.||++|| |++.++
T Consensus 32 ~~~liVtd~~~~----~~~~~~v~~~L-~~g~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D~ 105 (354)
T 1xah_A 32 DQSFLLIDEYVN----QYFANKFDDIL-SYENVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGG-GATGDF 105 (354)
T ss_dssp SCEEEEEEHHHH----HHHHHHHC-------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEES-HHHHHH
T ss_pred CeEEEEECCcHH----HHHHHHHHHHH-hcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECC-hHHHHH
Confidence 367777775322 12455666666 432 3 1221 1 12333344444333333 489999998 889898
Q ss_pred HHHHHcCCCCCCCcEEEecC--CCc
Q psy16024 132 LNTIHNMKLDPAPSVGIIPL--GTG 154 (316)
Q Consensus 132 ~n~l~~~~~~~~~~lgiiP~--GTg 154 (316)
.-.+...- ...+|+..||. +|+
T Consensus 106 ak~vA~~~-~rgip~i~IPTT~~a~ 129 (354)
T 1xah_A 106 AGFVAATL-LRGVHFIQVPTTILAH 129 (354)
T ss_dssp HHHHHHHB-TTCCEEEEEECSTTHH
T ss_pred HHHHHHHh-ccCCCEEEECCccccc
Confidence 87765321 23689999998 455
No 54
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=35.00 E-value=34 Score=27.65 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCc-chHHHHHHHHHcCCCCCCCcEEEecCC
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGD-GTAAWILNTIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGD-GTl~~v~n~l~~~~~~~~~~lgiiP~G 152 (316)
+.|.++.+.+.+.++ .||.-||. |-...+..+..+.. ...+|++|--
T Consensus 31 ~~A~~lg~~la~~g~-~lv~GGG~~GlM~a~~~ga~~~G---G~viGv~p~~ 78 (189)
T 3sbx_A 31 ELAGAVGAAIAARGW-TLVWGGGHVSAMGAVSSAARAHG---GWTVGVIPKM 78 (189)
T ss_dssp HHHHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHTTT---CCEEEEEETT
T ss_pred HHHHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC---CcEEEEcCch
Confidence 446677777766533 34444457 77777777777653 5789999973
No 55
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=34.49 E-value=60 Score=28.62 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=50.0
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCceE--EEcccC----ChHHHHHHH---HhCCCCCceEEEEEcCcchHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQV--VDLADK----SPEEALQWV---SLMPSSGQTLILAAGGDGTAAWIL 132 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v--~~~~t~----~~~~~~~~~---~~~~~~~~~~iv~~GGDGTl~~v~ 132 (316)
.+++|+.++..... ..+++.+.|+..++ +.+... +.+...++. ++....+.|.||++|| |++.++.
T Consensus 27 ~~~livtd~~v~~~----~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D~a 101 (343)
T 3clh_A 27 QKALIISDSIVAGL----HLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGG-GVISDMV 101 (343)
T ss_dssp SCEEEEEEHHHHTT----THHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHHHH
T ss_pred CEEEEEECCcHHHH----HHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECC-hHHHHHH
Confidence 47888888754432 46778887765433 222111 223333433 3333333499999998 8888888
Q ss_pred HHHHcCCCCCCCcEEEecC
Q psy16024 133 NTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 133 n~l~~~~~~~~~~lgiiP~ 151 (316)
-.+...- ...+|+..||.
T Consensus 102 k~~A~~~-~rgip~i~IPT 119 (343)
T 3clh_A 102 GFASSIY-FRGIDFINIPT 119 (343)
T ss_dssp HHHHHHB-TTCCEEEEEEC
T ss_pred HHHHHHh-ccCCCEEEeCC
Confidence 7665321 23588999995
No 56
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=34.48 E-value=41 Score=27.08 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCc-chHHHHHHHHHcCCCCCCCcEEEecCC
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGD-GTAAWILNTIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGD-GTl~~v~n~l~~~~~~~~~~lgiiP~G 152 (316)
+.|.++.+.+.+.+ -.||.-||. |--..+..+..+.. ...+|++|.+
T Consensus 20 ~~A~~lg~~La~~g-~~lV~GGg~~GiM~aa~~gA~~~g---G~~iGv~p~~ 67 (191)
T 1t35_A 20 RKAAELGVYMAEQG-IGLVYGGSRVGLMGTIADAIMENG---GTAIGVMPSG 67 (191)
T ss_dssp HHHHHHHHHHHHTT-CEEEECCCCSHHHHHHHHHHHTTT---CCEEEEEETT
T ss_pred HHHHHHHHHHHHCC-CEEEECCCcccHHHHHHHHHHHcC---CeEEEEeCch
Confidence 45677777776653 234444456 77777777877653 5789999976
No 57
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=34.39 E-value=24 Score=35.91 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCC---CCCcEEEecCCCcchhh
Q psy16024 103 EALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLD---PAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 103 ~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~---~~~~lgiiP~GTgNd~A 158 (316)
+..++++.+.+.+.|.++++|||||+.-+ +.|.+.... ..+|+--||.=--||+.
T Consensus 676 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~~~~y~~~~I~vVGIPkTIDNDl~ 733 (989)
T 3opy_A 676 DMGTVAYYFQQYKFDGLIIIGGFEAFTAL-YELDAARAQYPIFNIPMCCLPATVSNNVP 733 (989)
T ss_dssp GHHHHHHHHHHHTCSEEEEEESHHHHHHH-HHHHHHTTTCGGGCSCEEEEEBCSSCCCT
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHH-HHHHHHHhhCCCcCCcEEeccccccCCCC
Confidence 44455555555567999999999998654 455442111 25788889998899995
No 58
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=34.23 E-value=12 Score=19.08 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=8.3
Q ss_pred ecCCCcchhhh
Q psy16024 149 IPLGTGNDLSR 159 (316)
Q Consensus 149 iP~GTgNd~Ar 159 (316)
+..|+.||||-
T Consensus 2 lgigscn~fag 12 (26)
T 1rpb_A 2 LGIGSCNDFAG 12 (26)
T ss_dssp BSCSSBCSSSS
T ss_pred cceecccCcCC
Confidence 45688999974
No 59
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=33.79 E-value=27 Score=34.72 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=35.5
Q ss_pred HHHhCCCCCceEEEEEcCcchHHHHH----------HHHHcC--------CCCCCCcEEEecCCCcchhhh
Q psy16024 107 WVSLMPSSGQTLILAAGGDGTAAWIL----------NTIHNM--------KLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 107 ~~~~~~~~~~~~iv~~GGDGTl~~v~----------n~l~~~--------~~~~~~~lgiiP~GTgNd~Ar 159 (316)
.++.+.+.+.|.++++|||||+.-+. +.|.+. .....+++--||.==-||+.-
T Consensus 91 ~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 91 AAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp HHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred HHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 34444445579999999999987652 233321 111357888899888899974
No 60
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=33.41 E-value=48 Score=26.36 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCCceEEEEEcC-cchHHHHHHHHHcCCCCCCCcEEEecCC
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGG-DGTAAWILNTIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GG-DGTl~~v~n~l~~~~~~~~~~lgiiP~G 152 (316)
..|.++++.+.+.+ -.||.-|| -|.-..+..+..+.. ...+|+||..
T Consensus 32 ~~A~~lg~~La~~g-~~lVsGGg~~Gim~aa~~gAl~~g---G~tigVlP~~ 79 (176)
T 2iz6_A 32 VMANELGKQIATHG-WILLTGGRSLGVMHEAMKGAKEAG---GTTIGVLPGP 79 (176)
T ss_dssp HHHHHHHHHHHHTT-CEEEEECSSSSHHHHHHHHHHHTT---CCEEEEECC-
T ss_pred HHHHHHHHHHHHCC-CEEEECCCccCHhHHHHHHHHHcC---CEEEEEeCch
Confidence 34566777766552 45566666 788887887877753 4789999975
No 61
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=32.40 E-value=67 Score=27.15 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=34.5
Q ss_pred CceEEEEEcCc----chHHHHHHHHHcCCCCCCCcEEEecCCCc-chhhhhhCCCC
Q psy16024 115 GQTLILAAGGD----GTAAWILNTIHNMKLDPAPSVGIIPLGTG-NDLSRVLGWGK 165 (316)
Q Consensus 115 ~~~~iv~~GGD----GTl~~v~n~l~~~~~~~~~~lgiiP~GTg-Nd~Ar~lg~~~ 165 (316)
+.+++++.+|| |+..+++..+.+. .+++=+||.=|. ...|-.+|++.
T Consensus 76 G~~Va~L~~GDP~iyg~~~~l~~~l~~~----gi~veviPGiSs~~aaaA~lG~pl 127 (264)
T 3ndc_A 76 GQDVARLHSGDLSIWSAMGEQLRRLRAL----NIPYDVTPGVPSFAAAAATLGAEL 127 (264)
T ss_dssp TCCEEEEESBCTTSSCSHHHHHHHHHHT----TCCEEEECCCCHHHHHHHHHTCCS
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHhC----CCCEEEeCCHHHHHHHHHHhCCCc
Confidence 45788888999 6777888877654 478999998554 55566677764
No 62
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=32.40 E-value=36 Score=27.65 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
..|.++++.+.+.++. ||.-|+-|.-..+..+..+.. ...+|+||.
T Consensus 45 ~~A~~lg~~LA~~G~~-vVsGg~~GiM~aa~~gAl~~G---G~~iGVlP~ 90 (195)
T 1rcu_A 45 DICLELGRTLAKKGYL-VFNGGRDGVMELVSQGVREAG---GTVVGILPD 90 (195)
T ss_dssp HHHHHHHHHHHHTTCE-EEECCSSHHHHHHHHHHHHTT---CCEEEEEST
T ss_pred HHHHHHHHHHHHCCCE-EEeCCHHHHHHHHHHHHHHcC---CcEEEEeCC
Confidence 5577777777766443 333355555555555666543 468999997
No 63
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=32.31 E-value=41 Score=27.76 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCc-chHHHHHHHHHcCCCCCCCcEEEec
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGD-GTAAWILNTIHNMKLDPAPSVGIIP 150 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGD-GTl~~v~n~l~~~~~~~~~~lgiiP 150 (316)
..|.++.+.+.+.+ ..||.-||. |--..+..+..+.. ...+|++|
T Consensus 28 ~~A~~lg~~LA~~g-~~lV~GGg~~GlM~aa~~gA~~~G---G~~iGv~p 73 (216)
T 1ydh_A 28 DAAIELGNELVKRK-IDLVYGGGSVGLMGLISRRVYEGG---LHVLGIIP 73 (216)
T ss_dssp HHHHHHHHHHHHTT-CEEEECCCSSHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred HHHHHHHHHHHHCC-CEEEECCCcccHhHHHHHHHHHcC---CcEEEEec
Confidence 45667777776653 345555566 77777777777653 47899999
No 64
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=32.24 E-value=16 Score=37.09 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=35.6
Q ss_pred HHHHhCCCCCceEEEEEcCcchHHHHHHHHH-----------cCC--------CCCCCcEEEecCCCcchhhh
Q psy16024 106 QWVSLMPSSGQTLILAAGGDGTAAWILNTIH-----------NMK--------LDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 106 ~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~-----------~~~--------~~~~~~lgiiP~GTgNd~Ar 159 (316)
+.++.+.+.+.|.++++|||||+.-+. .|. +.. ....+++--||.==-||+.-
T Consensus 295 ~~~~~L~~~gId~LvvIGGDGS~~gA~-~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 295 QACYNMVSNGIDALVVCGGDGSLTGAD-LFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp HHHHHHHHTTCCEEEEEECHHHHHHHH-HHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred HHHHHHHHcCCCEEEEeCCChhhHHHH-HHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 445555555689999999999987553 221 110 01357888899988899973
No 65
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=32.11 E-value=26 Score=34.93 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=37.1
Q ss_pred HHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcC-CC--CCCCcEEEecCCCcchhh
Q psy16024 104 ALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNM-KL--DPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 104 ~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~-~~--~~~~~lgiiP~GTgNd~A 158 (316)
..++++.+.+.+-|.++++|||||..-+. .|.+. .. ...+|+--||.=--||+.
T Consensus 472 ~~~~~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~~~~~~~i~vIgiPkTIDNDl~ 528 (787)
T 3o8o_A 472 LGTIAYYFQKNKLDGLIILGGFEGFRSLK-QLRDGRTQHPIFNIPMCLIPATVSNNVP 528 (787)
T ss_dssp HHHHHHHHHHTTCSEEEEEESHHHHHHHH-HHHHHTTTCGGGGSCEEEEEBCTTCCCT
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHHHH-HHHHHHHhcCccCCceeecccccccCCC
Confidence 33445555555679999999999987654 44332 10 124788899999999996
No 66
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=30.98 E-value=28 Score=34.59 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=35.2
Q ss_pred HHHhCCCCCceEEEEEcCcchHHHHH----------HHHHcCC--------CCCCCcEEEecCCCcchhhh
Q psy16024 107 WVSLMPSSGQTLILAAGGDGTAAWIL----------NTIHNMK--------LDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 107 ~~~~~~~~~~~~iv~~GGDGTl~~v~----------n~l~~~~--------~~~~~~lgiiP~GTgNd~Ar 159 (316)
.++.+.+.+-|.++++|||||+.-+. +.|.+.. ....+++--||.==-||+.-
T Consensus 90 ~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 90 GAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp HHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred HHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 34444444579999999999997552 2333210 11357888899888899974
No 67
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=30.60 E-value=15 Score=37.27 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=34.7
Q ss_pred HHHhCCCCCceEEEEEcCcchHHHHHHHHHc-----------C--------CCCCCCcEEEecCCCcchhhh
Q psy16024 107 WVSLMPSSGQTLILAAGGDGTAAWILNTIHN-----------M--------KLDPAPSVGIIPLGTGNDLSR 159 (316)
Q Consensus 107 ~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~-----------~--------~~~~~~~lgiiP~GTgNd~Ar 159 (316)
.++.+.+.+.|.++++|||||+.-+. .|.+ . .....+++--||.==-||++-
T Consensus 268 ~~~~L~~~gId~LvvIGGDGS~~gA~-~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~g 338 (941)
T 3opy_B 268 ACKNMIDMGIDALIVCGGDGSLTGAD-RFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSS 338 (941)
T ss_dssp HHHHHHHHTCCEEEEEECHHHHHHHH-HHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSS
T ss_pred HHHHHHHcCCCEEEEeCCChhHHHHH-HHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCC
Confidence 44445555679999999999998653 2211 0 001357888899888899874
No 68
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=30.37 E-value=37 Score=33.71 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=34.9
Q ss_pred HHHHhCCCCCceEEEEEcCcchHHHHHH----------HHHcC--------CCCCCCcEEEecCCCcchhh
Q psy16024 106 QWVSLMPSSGQTLILAAGGDGTAAWILN----------TIHNM--------KLDPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 106 ~~~~~~~~~~~~~iv~~GGDGTl~~v~n----------~l~~~--------~~~~~~~lgiiP~GTgNd~A 158 (316)
+.++.+.+.+-|.++++|||||+.-+.. .|.+. .....+++--||.==-||+.
T Consensus 100 ~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~ 170 (762)
T 3o8l_A 100 RAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFC 170 (762)
T ss_dssp HHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCS
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCC
Confidence 4444555455799999999999976541 22211 01135788889988889997
No 69
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=27.83 E-value=59 Score=29.18 Aligned_cols=83 Identities=11% Similarity=0.031 Sum_probs=48.3
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCc--eE--EEccc--C--ChHHHHHH---HHhCCCCCceEEEEEcCcchHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPL--QV--VDLAD--K--SPEEALQW---VSLMPSSGQTLILAAGGDGTAAW 130 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~--~v--~~~~t--~--~~~~~~~~---~~~~~~~~~~~iv~~GGDGTl~~ 130 (316)
.+++|+.++.... ..+++.+.|+.. ++ +.+.. . ......++ +++....+.|.||++|| |++.+
T Consensus 44 ~rvlIVtd~~v~~-----~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGG-Gsv~D 117 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-----TAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGG-GAATD 117 (368)
T ss_dssp SEEEEEECGGGHH-----HHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHHH
T ss_pred CEEEEEECccHHH-----HHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHH
Confidence 5788888876432 356666766543 22 22211 1 11233333 33333233699999999 88888
Q ss_pred HHHHHHcCCCCCCCcEEEecC
Q psy16024 131 ILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 131 v~n~l~~~~~~~~~~lgiiP~ 151 (316)
+.-.+.... ...+|+..||.
T Consensus 118 ~ak~~Aa~~-~rgip~i~IPT 137 (368)
T 3qbe_A 118 VAGFAAATW-LRGVSIVHLPT 137 (368)
T ss_dssp HHHHHHHHG-GGCCEEEEEEC
T ss_pred HHHHHHHHh-ccCCcEEEECC
Confidence 887665321 12578999997
No 70
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=27.56 E-value=55 Score=26.92 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCc-chHHHHHHHHHcCCCCCCCcEEEecCC
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGD-GTAAWILNTIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGD-GTl~~v~n~l~~~~~~~~~~lgiiP~G 152 (316)
..|.++.+.+.+.+ -.||.-||. |--..+..+..+.. ...+|+||..
T Consensus 32 ~~A~~lg~~LA~~G-~~vVsGGg~~GiM~aa~~gAl~~G---G~tiGVlP~~ 79 (215)
T 2a33_A 32 DAAVDLGNELVSRN-IDLVYGGGSIGLMGLVSQAVHDGG---RHVIGIIPKT 79 (215)
T ss_dssp HHHHHHHHHHHHTT-CEEEECCCSSHHHHHHHHHHHHTT---CCEEEEEESS
T ss_pred HHHHHHHHHHHHCC-CEEEECCChhhHhHHHHHHHHHcC---CcEEEEcchH
Confidence 34667777776653 344444555 77777777777653 4789999864
No 71
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=27.52 E-value=83 Score=26.30 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCceEEEEEcCc----chHHHHHHHHHcCCCCCCCcEEEecCCCc-chhhhhhCCCC
Q psy16024 114 SGQTLILAAGGD----GTAAWILNTIHNMKLDPAPSVGIIPLGTG-NDLSRVLGWGK 165 (316)
Q Consensus 114 ~~~~~iv~~GGD----GTl~~v~n~l~~~~~~~~~~lgiiP~GTg-Nd~Ar~lg~~~ 165 (316)
++.+++++.+|| |+..+++..+.+. .+++=+||.=|. ...+-.+|+|.
T Consensus 76 ~g~~V~~l~~GDP~i~~~~~~l~~~l~~~----gi~veviPGiSS~~aa~a~~G~pl 128 (253)
T 4e16_A 76 NNKSVVRLQTGDFSIYGSIREQVEDLNKL----NIDYDCTPGVSSFLGAASSLGVEY 128 (253)
T ss_dssp TTCCEEEEESBCTTTTCCHHHHHHHHHHH----TCCEEEECCCCHHHHHHHHHTCCS
T ss_pred CCCcEEEEeCCCCccccCHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHhCCCc
Confidence 345788888999 7777777777654 368999998554 44555667654
No 72
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=26.83 E-value=80 Score=27.91 Aligned_cols=82 Identities=15% Similarity=0.023 Sum_probs=48.4
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcCCceE-EEccc----CChHHHHHH---HHhCCCCCceEEEEEcCcchHHHHHH
Q psy16024 62 LWKLGRGNRKSGNGDGSHILSTFRRLLNPLQV-VDLAD----KSPEEALQW---VSLMPSSGQTLILAAGGDGTAAWILN 133 (316)
Q Consensus 62 ~~~~vivNp~sG~~~~~~~~~~~~~~l~~~~v-~~~~t----~~~~~~~~~---~~~~~~~~~~~iv~~GGDGTl~~v~n 133 (316)
.+++|+.++... . ..+++.+.|+ .++ +.+.. ..-+...++ +++....+.|.||++|| |++.++.-
T Consensus 29 ~kvliVtd~~v~----~-~~~~v~~~L~-~~~~~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D~ak 101 (348)
T 1ujn_A 29 GPAALLFDRRVE----G-FAQEVAKALG-VRHLLGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGG-GTLTDLGG 101 (348)
T ss_dssp SCEEEEEEGGGH----H-HHHHHHHHHT-CCCEEEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHHHHHH
T ss_pred CEEEEEECCcHH----H-HHHHHHHHhc-cCeEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECC-cHHHHHHH
Confidence 478888886433 2 5666777665 222 22211 122333333 33333233689999998 89999887
Q ss_pred HHHcCCCCCCCcEEEecC
Q psy16024 134 TIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 134 ~l~~~~~~~~~~lgiiP~ 151 (316)
.+...- ...+|+..||.
T Consensus 102 ~~A~~~-~rgip~i~IPT 118 (348)
T 1ujn_A 102 FVAATY-LRGVAYLAFPT 118 (348)
T ss_dssp HHHHHB-TTCCEEEEEEC
T ss_pred HHHHHh-ccCCCEEEecC
Confidence 765321 23589999997
No 73
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=26.58 E-value=53 Score=26.72 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCc-chHHHHHHHHHcCCCCCCCcEEEecCC
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGD-GTAAWILNTIHNMKLDPAPSVGIIPLG 152 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGD-GTl~~v~n~l~~~~~~~~~~lgiiP~G 152 (316)
+.|.++.+.+.+.+. .||.-||. |--..+..+..+.. ...+|++|-.
T Consensus 40 ~~A~~lg~~La~~g~-~lV~GGG~~GlM~a~~~gA~~~G---G~viGv~p~~ 87 (199)
T 3qua_A 40 ELAAEVGSSIAARGW-TLVSGGGNVSAMGAVAQAARAKG---GHTVGVIPKA 87 (199)
T ss_dssp HHHHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHHTT---CCEEEEEEGG
T ss_pred HHHHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC---CcEEEEeCch
Confidence 456677777766533 34444566 77777777877653 4789999974
No 74
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=26.49 E-value=53 Score=26.12 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=23.9
Q ss_pred eEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 117 TLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 117 ~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
-.|++-||=||+.|+...+.. ..|+.++|.
T Consensus 110 a~IvlpGg~GTL~E~~~al~~-----~kpV~~l~~ 139 (176)
T 2iz6_A 110 VLVAVGMGPGTAAEVALALKA-----KKPVVLLGT 139 (176)
T ss_dssp EEEEESCCHHHHHHHHHHHHT-----TCCEEEESC
T ss_pred EEEEecCCccHHHHHHHHHHh-----CCcEEEEcC
Confidence 356667899999999999843 368899987
No 75
>4dxr_B Nesprin-1; beta-sandwich, LINC complex, structural protein; HET: DMU; 2.32A {Homo sapiens} PDB: 4dxs_B*
Probab=25.69 E-value=21 Score=20.12 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=9.4
Q ss_pred CcchhhhhhCCC
Q psy16024 153 TGNDLSRVLGWG 164 (316)
Q Consensus 153 TgNd~Ar~lg~~ 164 (316)
-.|.|||++..-
T Consensus 14 ~aNNFARSF~pM 25 (35)
T 4dxr_B 14 LSNNFARSFHPM 25 (35)
T ss_dssp TCCTGGGSSSCE
T ss_pred hhhhHHHHhHHH
Confidence 369999998753
No 76
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=25.48 E-value=25 Score=34.95 Aligned_cols=53 Identities=9% Similarity=0.034 Sum_probs=36.5
Q ss_pred HHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCC---CCCCcEEEecCCCcchhh
Q psy16024 105 LQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKL---DPAPSVGIIPLGTGNDLS 158 (316)
Q Consensus 105 ~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~---~~~~~lgiiP~GTgNd~A 158 (316)
.++++.+.+.+-|.+|++|||||+.-+. .|.+... ...+++--||.=--||+.
T Consensus 474 ~~~~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~~~~~~~i~vvgiPkTIDNDl~ 529 (766)
T 3o8o_B 474 GMIAYYFQKYEFDGLIIVGGFEAFESLH-QLERARESYPAFRIPMVLIPATLSNNVP 529 (766)
T ss_dssp HHHHHHHHHHTCSEEEEEESHHHHHHHH-HHHTTTTTCGGGCSCCCEEEBCTTCCCS
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHHH-HHHHHHHhcCccCCcEEeeccccccCCC
Confidence 3455555555679999999999986543 4443211 124788889998899985
No 77
>4eo1_A Attachment protein G3P; TOLA binding protein, infection, filamentous phage, ATT protein, TOLA binding, coat protein, TOLA, phage coat; 1.80A {Enterobacteria phage ike}
Probab=22.49 E-value=17 Score=23.86 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=9.6
Q ss_pred EEEEEcCcchH
Q psy16024 118 LILAAGGDGTA 128 (316)
Q Consensus 118 ~iv~~GGDGTl 128 (316)
-|++++||||+
T Consensus 44 GVivc~~dgT~ 54 (70)
T 4eo1_A 44 GVTVCQNDGTV 54 (70)
T ss_dssp SSEEECSSSSC
T ss_pred eEEEecCCCCE
Confidence 48999999996
No 78
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=21.99 E-value=73 Score=25.02 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCCceEEEEEcCcchHHHHHHHHHcCCCCCCCcEEEecC
Q psy16024 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPL 151 (316)
Q Consensus 102 ~~~~~~~~~~~~~~~~~iv~~GGDGTl~~v~n~l~~~~~~~~~~lgiiP~ 151 (316)
+.|.++.+.+.+.+ -.||.-||.|--..+..+..+.. ...+|++|.
T Consensus 20 ~~A~~lg~~La~~g-~~lV~Ggg~GiM~aa~~gAl~~g---G~tiGV~~~ 65 (171)
T 1weh_A 20 ARWVRYGEVLAEEG-FGLACGGYQGGMEALARGVKAKG---GLVVGVTAP 65 (171)
T ss_dssp HHHHHHHHHHHHTT-EEEEECCSSTHHHHHHHHHHHTT---CCEEECCCG
T ss_pred HHHHHHHHHHHHCC-CEEEeCChhhHHHHHHHHHHHcC---CcEEEEecc
Confidence 45667777776653 45666677777777777777653 468999875
No 79
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=21.43 E-value=44 Score=29.39 Aligned_cols=66 Identities=12% Similarity=0.037 Sum_probs=34.5
Q ss_pred ccccccCCCCCCC-CcchHHHHHhhcCCc--eEEEcc---------c-CChHHHHHHHHhCCCCCceEEEEE-cCcchHH
Q psy16024 64 KLGRGNRKSGNGD-GSHILSTFRRLLNPL--QVVDLA---------D-KSPEEALQWVSLMPSSGQTLILAA-GGDGTAA 129 (316)
Q Consensus 64 ~~vivNp~sG~~~-~~~~~~~~~~~l~~~--~v~~~~---------t-~~~~~~~~~~~~~~~~~~~~iv~~-GGDGTl~ 129 (316)
..-|+-|.|+-.. ....++...+.|+.. +|..-. . ...+-|.++.+.+.+...+.|+++ ||+|+..
T Consensus 14 ~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~r 93 (327)
T 4h1h_A 14 EIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFNSNQ 93 (327)
T ss_dssp EEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSCGGG
T ss_pred EEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCchhHHH
Confidence 3446778776432 223344444555443 332111 1 112345566666666557777655 9999864
No 80
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=20.60 E-value=1.8e+02 Score=24.65 Aligned_cols=47 Identities=21% Similarity=0.148 Sum_probs=33.8
Q ss_pred CceEEEEEcCc----chHHHHHHHHHcCCCCCCCcEEEecCCCc-chhhhhhCCCC
Q psy16024 115 GQTLILAAGGD----GTAAWILNTIHNMKLDPAPSVGIIPLGTG-NDLSRVLGWGK 165 (316)
Q Consensus 115 ~~~~iv~~GGD----GTl~~v~n~l~~~~~~~~~~lgiiP~GTg-Nd~Ar~lg~~~ 165 (316)
+.+++++.+|| |+-.+.+..+.+. .+++=+||.=|. ...+-.+|++.
T Consensus 92 G~~Vv~L~~GDP~i~g~g~~l~~~l~~~----gi~veviPGiSs~~aa~a~~Gipl 143 (280)
T 1s4d_A 92 GNRVLRLKGGDPFVFGRGGEEALTLVEH----QVPFRIVPGITAGIGGLAYAGIPV 143 (280)
T ss_dssp TCCEEEEESBCTTSSSSHHHHHHHHHTT----TCCEEEECCCCTTTHHHHHTTCCS
T ss_pred CCeEEEEcCCCCccccCHHHHHHHHHHC----CCCEEEEcCccHHHHHHHHcCCCc
Confidence 45788999999 5666777777654 478999998554 55556777765
Done!