RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16024
(316 letters)
>gnl|CDD|216019 pfam00609, DAGK_acc, Diacylglycerol kinase accessory domain.
Diacylglycerol (DAG) is a second messenger that acts as
a protein kinase C activator. This domain is assumed to
be an accessory domain: its function is unknown.
Length = 157
Score = 138 bits (350), Expect = 2e-40
Identities = 46/92 (50%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
Query: 213 MYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIEL 272
M NY SIGVDA++AL FH RE +F+SR NK +Y FG ++ ++R C++L +++EL
Sbjct: 2 MNNYFSIGVDARIALGFHRLREEHPELFNSRLKNKLIYGKFGFKKMLQRSCKNLIEKVEL 61
Query: 273 YLDGERVDLPP-IESVVVLNIPSWASGVDLWK 303
+DG+ V LP +E +VVLNIPS+A G DLW
Sbjct: 62 EVDGKDVPLPSSLEGIVVLNIPSYAGGTDLWG 93
Score = 78.0 bits (193), Expect = 1e-17
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 4 AFKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPP-IESVVVLNIPSWASGVDL 62
K K +Y FG ++ ++R C++L +++EL +DG+ V LP +E +VVLNIPS+A G DL
Sbjct: 32 RLKNKLIYGKFGFKKMLQRSCKNLIEKVELEVDGKDVPLPSSLEGIVVLNIPSYAGGTDL 91
Query: 63 WK 64
W
Sbjct: 92 WG 93
>gnl|CDD|214486 smart00045, DAGKa, Diacylglycerol kinase accessory domain
(presumed). Diacylglycerol (DAG) is a second messenger
that acts as a protein kinase C activator. DAG can be
produced from the hydrolysis of phosphatidylinositol
4,5-bisphosphate (PIP2) by a phosphoinositide-specific
phospholipase C and by the degradation of
phosphatidylcholine (PC) by a phospholipase C or the
concerted actions of phospholipase D and phosphatidate
phosphohydrolase. This domain might either be an
accessory domain or else contribute to the catalytic
domain. Bacterial homologues are known.
Length = 160
Score = 132 bits (335), Expect = 2e-38
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 213 MYNYLSIGVDAQVALDFHNTRESSLYIFSSRAFNKFLYLTFGTQQAMERGCRDLDQRIEL 272
M NY SIGVDA +AL+FHN RE++ F+SR NK Y GT+ R C+DL +RIEL
Sbjct: 2 MNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIEL 61
Query: 273 YLDGERVDLPP-IESVVVLNIPSWASGVDLW 302
DG VDLP +E + VLNIPS+ G +LW
Sbjct: 62 ECDGVDVDLPNSLEGIAVLNIPSYGGGTNLW 92
Score = 85.5 bits (212), Expect = 3e-20
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 5 FKLKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPP-IESVVVLNIPSWASGVDLW 63
K K Y GT+ R C+DL +RIEL DG VDLP +E + VLNIPS+ G +LW
Sbjct: 33 LKNKMWYFELGTKDLFFRTCKDLHERIELECDGVDVDLPNSLEGIAVLNIPSYGGGTNLW 92
>gnl|CDD|214487 smart00046, DAGKc, Diacylglycerol kinase catalytic domain
(presumed). Diacylglycerol (DAG) is a second messenger
that acts as a protein kinase C activator. DAG can be
produced from the hydrolysis of phosphatidylinositol
4,5-bisphosphate (PIP2) by a phosphoinositide-specific
phospholipase C and by the degradation of
phosphatidylcholine (PC) by a phospholipase C or the
concerted actions of phospholipase D and phosphatidate
phosphohydrolase. This domain is presumed to be the
catalytic domain. Bacterial homologues areknown.
Length = 124
Score = 114 bits (288), Expect = 9e-32
Identities = 55/124 (44%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 69 NRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTA 128
N KSG G G +L FR LLNP QV DL K P AL +P +L GGDGT
Sbjct: 5 NPKSGGGKGEKLLRKFRLLLNPRQVFDLTKKGPAVALVIFRDVPDFN--RVLVCGGDGTV 62
Query: 129 AWILNTIHNMKLD-PAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187
W+LN + +L P P V ++PLGTGNDL+R LGWG YD + + L + S
Sbjct: 63 GWVLNALDKRELPLPEPPVAVLPLGTGNDLARSLGWGGGYDGEK--LLKTLRDALESDTV 120
Query: 188 HLDR 191
LDR
Sbjct: 121 KLDR 124
>gnl|CDD|216116 pfam00781, DAGK_cat, Diacylglycerol kinase catalytic domain.
Diacylglycerol (DAG) is a second messenger that acts as
a protein kinase C activator. The catalytic domain is
assumed from the finding of bacterial homologues. YegS
is the Escherichia coli protein in this family whose
crystal structure reveals an active site in the
inter-domain cleft formed by four conserved sequence
motifs, revealing a novel metal-binding site. The
residues of this site are conserved across the family.
Length = 127
Score = 104 bits (262), Expect = 8e-28
Identities = 47/124 (37%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 69 NRKSGNGDG--SHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDG 126
N KSG G G +L R+ LN QVV+ + P AL+ + L++ AGGDG
Sbjct: 7 NPKSGGGRGKKDKVLPKLRKALNEAQVVETEEGGPAVALELARALGD-FDDLVVVAGGDG 65
Query: 127 TAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKV 186
T +LN + + P +GIIPLGTGND +R LG D D + IL + R V
Sbjct: 66 TVNEVLNGLAGREDRLKPPLGIIPLGTGNDFARALGIPG--DPDKAALLLILGQILRGDV 123
Query: 187 AHLD 190
LD
Sbjct: 124 VVLD 127
>gnl|CDD|224513 COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic
diacylglycerol kinase [Lipid metabolism / General
function prediction only].
Length = 301
Score = 72.7 bits (179), Expect = 1e-14
Identities = 53/227 (23%), Positives = 81/227 (35%), Gaps = 40/227 (17%)
Query: 69 NRKSGNGDGSHILSTFRRLL----NPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGG 124
N SG G +L LL + L V + +A++ G ++AAGG
Sbjct: 10 NPTSGKGKAKKLLREVEELLEEAGHELSVR--VTEEAGDAIEIAREAAVEGYDTVIAAGG 67
Query: 125 DGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRS 184
DGT + N + D P +GI+P GT ND +R LG L D L+ +
Sbjct: 68 DGTVNEVANGL--AGTDDPP-LGILPGGTANDFARALGI-PLDD-----IEAALELIKSG 118
Query: 185 KVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDAQVALDFHNTRESSLYIFSSRA 244
+ R++ L + R+ N IG DA+V E +
Sbjct: 119 E-------------TRKVDLGQVNGRRYFINNAGIGFDAEVV----AAVEEERK----KG 157
Query: 245 FNKFLYLTFGTQQAMERGCRDLDQRIELYLDGERVDLPPIESVVVLN 291
F + Y G RIE+ DG+ + + +V
Sbjct: 158 FGRLAYALAGLAVLARLKP----FRIEIEYDGKTFEGEALALLVFNG 200
>gnl|CDD|183982 PRK13337, PRK13337, putative lipid kinase; Reviewed.
Length = 304
Score = 50.0 bits (120), Expect = 4e-07
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 118 LILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG 162
L++AAGGDGT ++N I + + P +GIIP+GT ND +R L
Sbjct: 60 LVIAAGGDGTLNEVVNGI--AEKENRPKLGIIPVGTTNDFARALH 102
>gnl|CDD|161732 TIGR00147, TIGR00147, lipid kinase, YegS/Rv2252/BmrU family. The
E. coli member of this family, YegS has been purified
and shown to have phosphatidylglycerol kinase activity.
The member from M. tuberculosis, Rv2252, has
diacylglycerol kinase activity. BmrU from B. subtilis is
in an operon with multidrug efflux transporter Bmr, but
is uncharacterized [Unknown function, Enzymes of unknown
specificity].
Length = 293
Score = 49.0 bits (117), Expect = 1e-06
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 118 LILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG 162
++A GGDGT ++N + ++LD P++GI+PLGT ND +R LG
Sbjct: 60 TVIAGGGDGTINEVVNAL--IQLDDIPALGILPLGTANDFARSLG 102
>gnl|CDD|237282 PRK13055, PRK13055, putative lipid kinase; Reviewed.
Length = 334
Score = 49.2 bits (118), Expect = 1e-06
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 114 SGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVL 161
+G LI+AAGGDGT ++N I L+ P + IIP GT ND +R L
Sbjct: 58 AGFDLIIAAGGDGTINEVVNGI--APLEKRPKMAIIPAGTTNDYARAL 103
>gnl|CDD|234850 PRK00861, PRK00861, putative lipid kinase; Reviewed.
Length = 300
Score = 47.7 bits (114), Expect = 3e-06
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 31/108 (28%)
Query: 69 NRKSGNGDGSHILSTFRRLLNPLQVVDL----------ADKSPEEALQWVSLMPSSGQTL 118
N +G G+ L+ R +L P +DL AD+ +EA++ G L
Sbjct: 10 NPVAGQGNPEVDLALIRAILEP--EMDLDIYLTTPEIGADQLAQEAIE-------RGAEL 60
Query: 119 ILAAGGDGT----AAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG 162
I+A+GGDGT A ++ T P +GIIP GT N + LG
Sbjct: 61 IIASGGDGTLSAVAGALIGT-------DIP-LGIIPRGTANAFAAALG 100
>gnl|CDD|183858 PRK13059, PRK13059, putative lipid kinase; Reviewed.
Length = 295
Score = 47.0 bits (112), Expect = 6e-06
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 119 ILAAGGDGTAAWILNTIHNMKLD-PAPSVGIIPLGTGNDLSRVLG 162
IL AGGDGT ++N + + +D P +GI+P+GT ND ++ LG
Sbjct: 60 ILIAGGDGTVDNVVNAMKKLNIDLP---IGILPVGTANDFAKFLG 101
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 46.2 bits (110), Expect = 1e-05
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 14/62 (22%)
Query: 113 SSGQTLILAAGGDGT----AAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVL-GWG-KL 166
+G +++A GGDGT A+ ++NT ++ L GIIPLGT N LS L G G KL
Sbjct: 295 KAGADIVIACGGDGTVTEVASELVNT--DITL------GIIPLGTANALSHALFGLGSKL 346
Query: 167 YD 168
Sbjct: 347 IP 348
>gnl|CDD|237281 PRK13054, PRK13054, lipid kinase; Reviewed.
Length = 300
Score = 45.2 bits (108), Expect = 2e-05
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 102 EEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVL 161
EEAL G ++A GGDGT + + ++ D P++GI+PLGT ND +
Sbjct: 50 EEALA-------LGVATVIAGGGDGTINEVATALAQLEGDARPALGILPLGTANDFATAA 102
Query: 162 G 162
G
Sbjct: 103 G 103
>gnl|CDD|183857 PRK13057, PRK13057, putative lipid kinase; Reviewed.
Length = 287
Score = 41.8 bits (99), Expect = 2e-04
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 69 NRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEA--LQWVSLMPSSGQTLILAAGGDG 126
NR + +G + L+ R L + +L + E+ L V + G L++ GGDG
Sbjct: 5 NRHARSGRAA--LAAARAALEAAGL-ELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDG 61
Query: 127 TAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLG 162
T LN ++ +GI+PLGT NDL+R LG
Sbjct: 62 T----LNAAAPALVETGLPLGILPLGTANDLARTLG 93
>gnl|CDD|163414 TIGR03702, lip_kinase_YegS, lipid kinase YegS. Members of this
protein family are designated YegS, an apparent lipid
kinase family in the Proteobacteria. Bakali, et al.
report phosphatidylglycerol kinase activity for the
member from Escherichia coli, but refrain from calling
that activity synonymous with its biological role. Note
that a broader, subfamily-type model (TIGR00147),
includes this family but also multiple paralogs in some
species and varied functions [Unknown function, Enzymes
of unknown specificity].
Length = 293
Score = 40.9 bits (96), Expect = 5e-04
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 97 ADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGND 156
A + EAL + G + ++A GGDGT + + ++ D AP++G++PLGT ND
Sbjct: 41 AQRYVAEAL-------ALGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPLGTAND 93
Query: 157 LSRVLG 162
+ G
Sbjct: 94 FATAAG 99
>gnl|CDD|237021 PRK11914, PRK11914, diacylglycerol kinase; Reviewed.
Length = 306
Score = 32.1 bits (73), Expect = 0.33
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 93 VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLG 152
VV++ +A V+ + G ++ GGDG I N + + P +GIIP G
Sbjct: 42 VVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGV---ISNALQVLAGTDIP-LGIIPAG 97
Query: 153 TGNDLSRVLG 162
TGND +R G
Sbjct: 98 TGNDHAREFG 107
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional.
Length = 320
Score = 29.7 bits (67), Expect = 1.9
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 274 LDGERVDLPPIESVVVLNIPSWASGVDLWKLGRGQKSP 311
L GE +D+PP+E V+NI +++W GR + +P
Sbjct: 222 LSGEWMDVPPLEGSFVVNI---GDMMEMWSNGRYRSTP 256
Score = 29.3 bits (66), Expect = 2.7
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 35 LDGERVDLPPIESVVVLNIPSWASGVDLWKLGR 67
L GE +D+PP+E V+NI +++W GR
Sbjct: 222 LSGEWMDVPPLEGSFVVNI---GDMMEMWSNGR 251
>gnl|CDD|225535 COG2988, COG2988, Succinylglutamate desuccinylase [Amino acid
transport and metabolism].
Length = 324
Score = 28.5 bits (64), Expect = 3.9
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 191 RWSVQIKS-IRQLRLTRALKCRW--------MYNYLS-IGVDAQVALDFHNTRESSLYIF 240
RW + + + IR + + +LS G++A V H + + F
Sbjct: 140 RWHLDLHTAIRGSGHPQFGVLPQPDRPWSLKLLAWLSAAGLEALV---LHTSPGGTFSHF 196
Query: 241 SSRAFNKFLYLTFGTQQAMERGCRDLDQ------RIELYLDGERVDLPPIESVVV 289
SS L T +A+ G L Q I L G V +P +++
Sbjct: 197 SSEHLGA-LACTLELGKALPFGENLLRQFERTAQAILALLSGSEVGIPRTDNLRA 250
>gnl|CDD|224594 COG1680, AmpC, Beta-lactamase class C and other penicillin binding
proteins [Defense mechanisms].
Length = 390
Score = 28.8 bits (64), Expect = 4.2
Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 6/103 (5%)
Query: 211 RWMYNYLSIGVDAQVALDFHNTRESSLYIFS-SRAFNKFLYLTFGTQQAMERGCRDLDQR 269
A T + I S +++F + +E G DLD
Sbjct: 63 DGKTVVAKGYGVADEGYGGPVTPPTVFRIASVTKSF-----TATLLGKLVEEGKLDLDDP 117
Query: 270 IELYLDGERVDLPPIESVVVLNIPSWASGVDLWKLGRGQKSPF 312
+ YL + + + ++ + SG+ +
Sbjct: 118 VSKYLPEGKDPATGGAPITLRDLLTHTSGLPFPEDYAYAVPKR 160
>gnl|CDD|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase
[General function prediction only].
Length = 355
Score = 28.5 bits (64), Expect = 4.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 111 MPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGN 155
M G LI+ AGGDGTA + + + P +G IP G N
Sbjct: 96 MVERGVDLIVFAGGDGTARDVAEAV-GADV---PVLG-IPAGVKN 135
>gnl|CDD|188503 TIGR03988, antisig_RsrA, mycothiol system anti-sigma-R factor.
Members of this family are the anti-sigma-R factor
RsrA, which contains a CXXC motif as a thiol-disulphide
redox switch. It interacts with sigma-R. It regulates
and is regulated by the mycothiol system, which occurs
in many actinomycetes [Transcription, Transcription
factors].
Length = 77
Score = 26.5 bits (59), Expect = 4.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 23 GCRDLDQRIELYLDGE 38
C ++ + YLDGE
Sbjct: 1 DCSEVLAEVYEYLDGE 16
Score = 26.5 bits (59), Expect = 4.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 262 GCRDLDQRIELYLDGE 277
C ++ + YLDGE
Sbjct: 1 DCSEVLAEVYEYLDGE 16
>gnl|CDD|225267 COG2403, COG2403, Predicted GTPase [General function prediction
only].
Length = 449
Score = 28.2 bits (63), Expect = 7.1
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 93 VVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLG 152
V+ +D S E + S +L+AG D L M P + +
Sbjct: 87 VLAYSDVSYEHVFRIASR--------VLSAGAD---FKELGPKETMLKLEKPVIAVTATR 135
Query: 153 TGNDLSRVLGW 163
TG S V +
Sbjct: 136 TGVGKSAVSRY 146
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase.
Length = 588
Score = 28.0 bits (62), Expect = 8.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 53 IPSWASGVD---LWKLGRGNRKSGNGDGSHILSTF 84
IP+W SG D + K GRG +G G G I +T
Sbjct: 244 IPTWVSGADRKLMAKAGRG-ANAGGGGGGKIKATH 277
>gnl|CDD|130618 TIGR01555, phge_rel_HI1409, phage-related protein, HI1409 family.
This model describes an uncharacterized family of
proteins found in prophage regions of a number of
bacterial genomes, including Haemophilus influenzae,
Xylella fastidiosa, Salmonella typhi, and Enterococcus
faecalis. Distantly related proteins can be found in the
prophage-bearing plasmids of Borrelia burgdorferi
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 404
Score = 28.0 bits (62), Expect = 8.6
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 157 LSRVLGWGKLY----------DRDTCSPFQILDNLTRSKVAHLDRWSVQIKS 198
L + L W +LY ++ SP + LD + +L+ WS +I +
Sbjct: 86 LQQALTWERLYGDGFLSIGTIEKREYSPSEPLDFENIKSLPYLNAWSGKISN 137
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.425
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,556,422
Number of extensions: 1605133
Number of successful extensions: 1254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1235
Number of HSP's successfully gapped: 36
Length of query: 316
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 219
Effective length of database: 6,635,264
Effective search space: 1453122816
Effective search space used: 1453122816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)