RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16024
         (316 letters)



>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 312

 Score = 60.4 bits (145), Expect = 5e-11
 Identities = 33/167 (19%), Positives = 53/167 (31%), Gaps = 25/167 (14%)

Query: 69  NRKSGNGDGSHILSTFRRLLNP--LQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDG 126
           N  SG       L      L     +    A +   +A             +++AAGGDG
Sbjct: 10  NPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG 69

Query: 127 TAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKV 186
           T   ++N     +    P +G+IP+GT ND  R L                LD +     
Sbjct: 70  TLNEVVN--GIAEKPNRPKLGVIPMGTVNDFGRALHI-------PNDIMGALDVIIEGHS 120

Query: 187 AHLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDAQVALDFHNTR 233
             +D   +                R+  N  + G   QV+ +  +  
Sbjct: 121 TKVDIGKMN--------------NRYFINLAAGGQLTQVSYETPSKL 153


>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
           [TaxId: 562]}
          Length = 295

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 3/173 (1%)

Query: 69  NRKSGNGDG-SHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSSGQTLILAAGGDGT 127
           N KS +       +   R     + V         +A ++V      G   ++A GGDGT
Sbjct: 8   NGKSTDNLPLREAIMLLREEGMTIHVR--VTWEKGDAARYVEEARKFGVATVIAGGGDGT 65

Query: 128 AAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKLYDRDTCSPFQILDNLTRSKVA 187
              +   +   + D  P++GI+PLGT ND +  +G  +  D+                  
Sbjct: 66  INEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQV 125

Query: 188 HLDRWSVQIKSIRQLRLTRALKCRWMYNYLSIGVDAQVALDFHNTRESSLYIF 240
           +     + + +              +   L         L   +T +      
Sbjct: 126 NKQTCFINMATGGFGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEI 178


>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
           dehydrogenase [Burkholderia cenocepacia J2315] 
           gi|198040180|emb|CAR56163.1| putative amine
           dehydrogenase [Burkholderia cenocepacia J2315] 
           gi|194561004|ref|YP_002096029.1| hypothetical protein
           BCPG_04901 [Burkholderia cenocepacia PC184] 
           gi|124876520|gb|EAY66510.1| hypothetical protein
           BCPG_04901 [Burkholderia cenocepacia PC184] 
           gi|170737581|ref|YP_001778841.1| amine dehydrogenase
           [Burkholderia cenocepacia MC0-3] 
           gi|169819769|gb|ACA94351.1| Amine dehydrogenase
           [Burkholderia cenocepacia MC0-3] 
           gi|78061451|ref|YP_371359.1| amine dehydrogenase
           [Burkholderia sp. 383]   gi|77969336|gb|ABB10715.1|
           Amine dehydrogenase [Burkholderia sp. 383] 
           gi|107025662|ref|YP_623173.1| amine dehydrogenase
           [Burkholderia cenocepacia AU 1054] 
           gi|116693156|ref|YP_838689.1| amine dehydrogenase
           [Burkholderia cenocepacia HI2424] 
           gi|105895036|gb|ABF78200.1| Amine dehydrogenase
           [Burkholderia cenocepacia AU 1054] 
           gi|116651156|gb|ABK11796.1| Amine dehydrogenase
           [Burkholderia cenocepacia HI2424]  E=8e-14 s/c=0.25
           id=29% cov=82%
          Length = 321

 Score = 28.0 bits (61), Expect = 1.4
 Identities = 6/80 (7%), Positives = 14/80 (17%), Gaps = 1/80 (1%)

Query: 55  SWASGVDLWKLGRGNRKSGNGDGSHILSTFRRLLNPLQVVDLADKSPEEALQWVSLMPSS 114
                     + +G   S    G+ +     +            +   E L  + +    
Sbjct: 226 QAKQNRYYVLMHKGTDGSHKDPGTQVWVYDLKS-KQRVARWDLAQQKVEPLVSIQVSEDD 284

Query: 115 GQTLILAAGGDGTAAWILNT 134
                              T
Sbjct: 285 KPLFYGLTATSDLVVMDART 304


>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase
           PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 249

 Score = 26.7 bits (58), Expect = 3.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 118 LILAAGGDGTAAWILNTIHNMKLDPAPSVGI 148
            I++ GGDGT   IL  +  +K  P P  GI
Sbjct: 42  FIVSVGGDGT---ILRILQKLKRCP-PIFGI 68


>d1fmja_ c.37.1.5 (A:) Retinol dehydratase {Fall armyworm
           (Spodoptera frugiperda) [TaxId: 7108]}
          Length = 342

 Score = 25.7 bits (55), Expect = 7.3
 Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 11/113 (9%)

Query: 107 WVSLMPSSGQTLILAAGGDGTAAWILNTIHNMKLDPAPSVGIIPLGTGNDLSRVLGWGKL 166
           +V+    SG T+            ++  I N     A    +       D   +    K 
Sbjct: 60  FVASYQRSGTTMTQE---------LVWLIENDLNFEAAKTYMSLRYIYLDGFMIYDPEKQ 110

Query: 167 YDRDTCSPFQILDNLTR--SKVAHLDRWSVQIKSIRQLRLTRALKCRWMYNYL 217
            + +   P     ++ R    + +  R    + +       R +K     + +
Sbjct: 111 EEYNDILPNPENLDMERYLGLLEYSSRPGSSLLAAVPPTEKRFVKTHLPLSLM 163


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,219,848
Number of extensions: 57008
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 5
Length of query: 316
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,240,546
Effective search space: 286566126
Effective search space used: 286566126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)