BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16028
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 19/192 (9%)
Query: 47 GMGGIISCGSTH-----TLITPLDLVKCRLQVD-----GAKYKNLIHGFKVTMAEDGTRG 96
G+G + GST + P D+VK R Q G +Y++ + +K E+G RG
Sbjct: 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162
Query: 97 LVRGWAPTFFGYSAQGLGKFGLYEFFK--VIYSDILGEEAAYLYRTGLYLAASASAEFFA 154
L +G +P + + Y+ K ++ ++++ ++ + ++ A F
Sbjct: 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLP------CHFTSAFGAGFCT 216
Query: 155 DIALSPFEAIKVKVQTTA-GFATTLREAAPKMFAQEGVNAFFKSLVPLWGRQIPYTMMKF 213
+ SP + +K + +A G + A M +EG AF+K +P + R + ++ F
Sbjct: 217 TVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMF 276
Query: 214 ACFEKTVELLYA 225
+E+ L A
Sbjct: 277 VTYEQLKRALMA 288
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 111/284 (39%), Gaps = 39/284 (13%)
Query: 60 LIT-PLDLVKCRLQVDG-----------AKYKNLIHGFKVTMAEDGTRGLVRGWAPTFFG 107
LIT PLD K RLQ+ G A+Y+ ++ + +G R L G
Sbjct: 17 LITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQR 76
Query: 108 YSAQGLGKFGLYEFFKVIYSDILGEEAAYLYRTGLYLAASASAEFFADIALSPFEAIKVK 167
+ + GLY+ K Y+ G E A + G L A ++ A P + +KV+
Sbjct: 77 QMSFASVRIGLYDSVKQFYTK--GSEHAGI---GSRLLAGSTTGALAVAVAQPTDVVKVR 131
Query: 168 VQTTAGFATTLR-----EAAPKMFAQEGVNAFFKSLVPLWGRQIPYTMMKFACFEKTVE- 221
Q A R EA + +EG+ +K P R + ++ +
Sbjct: 132 FQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDT 191
Query: 222 LLYAHIVPKPRDQCSKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSK-LN------QEKG 274
LL A+++ + L F + + AG +++ P D + ++ +N G
Sbjct: 192 LLKANLMT---------DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAG 242
Query: 275 ATVGDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKVAF 318
+++K G +KG P + +G+ + + Y+ +K A
Sbjct: 243 HCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 31/191 (16%)
Query: 147 SASAEFFADIALSPFEAIKVKVQTTAGFATTLREAAP-----------KMFAQEGVNAFF 195
+ +A AD+ P + KV++Q +R AA M EG + +
Sbjct: 8 AGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLY 67
Query: 196 KSLVPLWGRQIPYTMMKFACFEKTVELLYAHIVPKPRDQCSKGEQLIVTFAAGYIAGVFC 255
LV RQ+ + ++ ++ +V+ Y K + G +L+ AG G
Sbjct: 68 NGLVAGLQRQMSFASVRIGLYD-SVKQFYT----KGSEHAGIGSRLL----AGSTTGALA 118
Query: 256 AIVSHPADTLVSKLNQEKGATVG-----------DIVKKIGFGGLWKGLGPRIIMIGTLT 304
V+ P D + + + A G I ++ G GLWKG P + +
Sbjct: 119 VAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 305 ALQWFIYDFVK 315
+ YD +K
Sbjct: 179 CAELVTYDLIK 189
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 91/260 (35%), Gaps = 28/260 (10%)
Query: 36 AFGSLKYFLLCGMGGIISCGSTHTLITPLDLVKCRLQVDGA--------KYKNLIHGFKV 87
A LK FL G+ IS T + P++ VK LQV A +YK +I
Sbjct: 4 ALSFLKDFLAGGVAAAIS----KTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR 59
Query: 88 TMAEDGTRGLVRGWAPTFFGYSAQGLGKFGLYEFFKVIYSDILGEEAAYLYRTGLYLAAS 147
E G RG Y F + +K I+ + + LA+
Sbjct: 60 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASG 119
Query: 148 ASAEFFADIALSPFEAIKVKVQTTAGFATTLRE------AAPKMFAQEGVNAFFKSLVPL 201
+A + + P + + ++ G RE K+F +G+ ++
Sbjct: 120 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 179
Query: 202 WGRQIPYTMMKFACFEKTVELLYAHIVPKPRDQCSKGEQLIVTFAAGYIAGVFCAIVSHP 261
I Y F ++ +L P P K +IV++ +VS+P
Sbjct: 180 VQGIIIYRAAYFGVYDTAKGML-----PDP-----KNVHIIVSWMIAQTVTAVAGLVSYP 229
Query: 262 ADTLVSKLNQEKGATVGDIV 281
DT+ ++ + G DI+
Sbjct: 230 FDTVRRRMMMQSGRKGADIM 249
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 255 CAIVSHPADTLVSKLNQEKGATVGDI-VKKIGFGGLWKGLGPRIIMIGTL--TALQWFIY 311
I AD ++ +N +G T D V KI L++ P ++ + L T ++ IY
Sbjct: 96 AEIAMDEADVIIFMVNGREGVTAADEEVAKI----LYRTKKPVVLAVNKLDNTEMRANIY 151
Query: 312 DFVKVAFGIPRP 323
DF + FG P P
Sbjct: 152 DFYSLGFGEPYP 163
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 255 CAIVSHPADTLVSKLNQEKGATVGDI-VKKIGFGGLWKGLGPRIIMIGTL--TALQWFIY 311
I AD ++ +N +G T D V KI L++ P ++ + L T + IY
Sbjct: 76 AEIAXDEADVIIFXVNGREGVTAADEEVAKI----LYRTKKPVVLAVNKLDNTEXRANIY 131
Query: 312 DFVKVAFGIPRP 323
DF + FG P P
Sbjct: 132 DFYSLGFGEPYP 143
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 176 TTLREAAPKMFAQEGVNAFFKSLVPLWGRQIPYTMMKFACFE 217
T + EA ++GV+ FK++ PL G +IP F E
Sbjct: 71 TKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLME 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,097,812
Number of Sequences: 62578
Number of extensions: 422780
Number of successful extensions: 1120
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 11
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)