Query psy16028
Match_columns 340
No_of_seqs 159 out of 1847
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 19:02:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 2.2E-54 7.4E-59 389.7 27.4 268 40-318 4-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.1E-54 7.1E-59 390.8 25.4 262 46-320 4-288 (303)
3 2lck_A Mitochondrial uncouplin 100.0 2.6E-42 9.1E-47 311.5 10.7 221 2-226 52-289 (303)
4 1okc_A ADP, ATP carrier protei 100.0 3.8E-40 1.3E-44 296.7 14.3 214 2-222 55-296 (297)
5 3f2e_A SIRV coat protein; four 62.1 24 0.00083 23.5 5.6 39 168-206 1-43 (100)
6 3tgu_G UQCRQ, mitochondrial ub 29.4 89 0.003 21.1 4.5 40 190-229 33-72 (81)
7 3tgu_G UQCRQ, mitochondrial ub 27.3 56 0.0019 22.1 3.2 35 284-318 32-66 (81)
8 2a3d_A Protein (de novo three- 24.6 82 0.0028 19.5 3.2 40 63-102 10-49 (73)
9 1pp9_G Ubiquinol-cytochrome C 22.8 1E+02 0.0034 20.9 3.8 35 284-318 32-66 (81)
10 1pp9_G Ubiquinol-cytochrome C 21.9 1.4E+02 0.0046 20.2 4.3 40 190-229 33-72 (81)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.2e-54 Score=389.72 Aligned_cols=268 Identities=20% Similarity=0.251 Sum_probs=232.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHcCCC--------CCCCHHHHHHHHHHhhchhhhhccchhhhHhhhhh
Q psy16028 40 LKYFLLCGMGGIISCGSTHTLITPLDLVKCRLQVDGA--------KYKNLIHGFKVTMAEDGTRGLVRGWAPTFFGYSAQ 111 (340)
Q Consensus 40 ~~~~~~~~~ag~~a~~~~~~i~~Pld~ik~r~Q~~~~--------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~ 111 (340)
...++..+++|+++++++.++++|+|++|+|+|++.. .+++.++++++++++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 3456678999999999999999999999999999742 57899999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHHHHhhhhcchhhhhhhhHHHHHHHHHHHHHHHHhhCcHHHHHHHHhcCC------CCcCcHHHHHHHH
Q psy16028 112 GLGKFGLYEFFKVIYSDILGEEAAYLYRTGLYLAASASAEFFADIALSPFEAIKVKVQTTA------GFATTLREAAPKM 185 (340)
Q Consensus 112 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Ple~iktr~q~~~------~~~~~~~~~~~~i 185 (340)
++++|.+||.+|+.+.+..+............+++|++||+++.++++|+|+||+|+|++. ..|.++.+++++|
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 9999999999999654322211111223566789999999999999999999999999874 3578999999999
Q ss_pred HHhhchhHhhcchhHHHHhHhhhhhhhHHhHHHHHHHHHhccCCCCCCcCCCCchhHHHHHHHHHHHHhHhhhcccHHHH
Q psy16028 186 FAQEGVNAFFKSLVPLWGRQIPYTMMKFACFEKTVELLYAHIVPKPRDQCSKGEQLIVTFAAGYIAGVFCAIVSHPADTL 265 (340)
Q Consensus 186 ~~~~G~~gly~G~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~t~Pldvv 265 (340)
+++||++|||||+.+++++.+++.+++|.+||.+|+.+.+. .+.+....+++|+++|++++++++|+|||
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----------~~~~~~~~~~~g~~ag~~a~~~t~P~dvv 233 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----------KNVHIIVSWMIAQTVTAVAGLVSYPFDTV 233 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----------GCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCccHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 99999999999999999999999999999999999965331 23456788999999999999999999999
Q ss_pred HHHHhccCc------------chHHHHHHhhchhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16028 266 VSKLNQEKG------------ATVGDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKVAF 318 (340)
Q Consensus 266 ktr~q~~~~------------~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~~~~~~~e~~~~~~ 318 (340)
|+|||.+.. +|+++|+++||++|||||+.++++|. +.+++.|.+||.+++.+
T Consensus 234 ktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 234 RRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 999998631 79999999999999999999999995 57899999999988753
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.1e-54 Score=390.79 Aligned_cols=262 Identities=19% Similarity=0.298 Sum_probs=238.0
Q ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHcCCC-----------CCCCHHHHHHHHHHhhchhhhhccchhhhHhhhhhhhh
Q psy16028 46 CGMGGIISCGSTHTLITPLDLVKCRLQVDGA-----------KYKNLIHGFKVTMAEDGTRGLVRGWAPTFFGYSAQGLG 114 (340)
Q Consensus 46 ~~~ag~~a~~~~~~i~~Pld~ik~r~Q~~~~-----------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~ 114 (340)
.+++|++|++++.++++|+|++|+|+|++.. .+++.++++++++++||+++||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999753 57899999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHhhhhcchhhhhhhhHHHHHHHHHHHHHHHHhhCcHHHHHHHHhcCCC-----CcCcHHHHHHHHHHhh
Q psy16028 115 KFGLYEFFKVIYSDILGEEAAYLYRTGLYLAASASAEFFADIALSPFEAIKVKVQTTAG-----FATTLREAAPKMFAQE 189 (340)
Q Consensus 115 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Ple~iktr~q~~~~-----~~~~~~~~~~~i~~~~ 189 (340)
+|.+||.+|+.+.+... .......+++|++||+++.++++|+|+||+|+|++.. .|.++.+++++|+++|
T Consensus 84 ~f~~ye~~k~~~~~~~~-----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc-----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhc
Confidence 99999999998865311 1335678899999999999999999999999999753 6889999999999999
Q ss_pred chhHhhcchhHHHHhHhhhhhhhHHhHHHHHHHHHhccCCCCCCcCCCCchhHHHHHHHHHHHHhHhhhcccHHHHHHHH
Q psy16028 190 GVNAFFKSLVPLWGRQIPYTMMKFACFEKTVELLYAHIVPKPRDQCSKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKL 269 (340)
Q Consensus 190 G~~gly~G~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~t~Pldvvktr~ 269 (340)
|++|||||+.+++++.+++.+++|.+||.+|+.+.+.. ....+....+++|+++|++++++++|+||||+||
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrl 230 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRY 230 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT--------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999999999999999875432 1234567889999999999999999999999999
Q ss_pred hccCc-------chHHHHHHhhchhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy16028 270 NQEKG-------ATVGDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKVAFGI 320 (340)
Q Consensus 270 q~~~~-------~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 320 (340)
|.+.. +|+++|+++||++|||||+.++++|.+|.+++.|.+||.+++.+..
T Consensus 231 q~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 231 MNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp TTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 98752 8999999999999999999999999999999999999999988854
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.6e-42 Score=311.53 Aligned_cols=221 Identities=19% Similarity=0.274 Sum_probs=196.1
Q ss_pred chHHHHHHhcCcccccccccccce-ecccCCCCccCccchHHH----------HHHHHHHHHHHHhhhhccchhHHHHHH
Q psy16028 2 PSFYEIAKQNAFKNPFSQAKCAGV-SNVILPGDSCAFGSLKYF----------LLCGMGGIISCGSTHTLITPLDLVKCR 70 (340)
Q Consensus 2 ~~~~~i~~~~g~~~ly~G~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~ag~~a~~~~~~i~~Pld~ik~r 70 (340)
+.+++|+++||+++||||+.|+++ ..|..+.++..++..++. ...+++|+++++++.++++|+|++|+|
T Consensus 52 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktr 131 (303)
T 2lck_A 52 GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVR 131 (303)
T ss_dssp HHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 357899999999999999999998 788777777666665544 356899999999999999999999999
Q ss_pred HHcCCC-----CCCCHHHHHHHHHHhhchhhhhccchhhhHhhhhhhhhhHhHHHHHHHHHhhhhcchhhhhhhhHHHHH
Q psy16028 71 LQVDGA-----KYKNLIHGFKVTMAEDGTRGLVRGWAPTFFGYSAQGLGKFGLYEFFKVIYSDILGEEAAYLYRTGLYLA 145 (340)
Q Consensus 71 ~Q~~~~-----~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (340)
+|++.. .+++..+++++++++||++|||||+.|++++.++..+++|.+||.+|+.+.+..... ......++
T Consensus 132 lq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~----~~~~~~~~ 207 (303)
T 2lck_A 132 FQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMT----DDLPCHFT 207 (303)
T ss_dssp HHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCC----SCHHHHHH
T ss_pred HhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CchHHHHH
Confidence 999864 678999999999999999999999999999999999999999999999876543211 22456789
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHhcCC-CCcCcHHHHHHHHHHhhchhHhhcchhHHHHhHhhhhhhhHHhHHHHHHHHH
Q psy16028 146 ASASAEFFADIALSPFEAIKVKVQTTA-GFATTLREAAPKMFAQEGVNAFFKSLVPLWGRQIPYTMMKFACFEKTVELLY 224 (340)
Q Consensus 146 ~g~~ag~~~~~v~~Ple~iktr~q~~~-~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~~~ye~~~~~~~ 224 (340)
+|++||++++++++|+|+||+|+|++. ..|.++.+|+++|+++||++|||||+.++++|.+|..+++|.+||.+|+.+.
T Consensus 208 ~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 208 SAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 3689999999999999999999999999999999999999999999998765
Q ss_pred hc
Q psy16028 225 AH 226 (340)
Q Consensus 225 ~~ 226 (340)
+.
T Consensus 288 ~~ 289 (303)
T 2lck_A 288 AA 289 (303)
T ss_dssp CH
T ss_pred Hh
Confidence 44
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.8e-40 Score=296.71 Aligned_cols=214 Identities=18% Similarity=0.217 Sum_probs=182.4
Q ss_pred chHHHHHHhcCcccccccccccce-ecccCCCCccCccchH---------------HHHHHHHHHHHHHHhhhhccchhH
Q psy16028 2 PSFYEIAKQNAFKNPFSQAKCAGV-SNVILPGDSCAFGSLK---------------YFLLCGMGGIISCGSTHTLITPLD 65 (340)
Q Consensus 2 ~~~~~i~~~~g~~~ly~G~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~ag~~a~~~~~~i~~Pld 65 (340)
+.+++|+++||++|||||+.|+++ ..|..+.++..++..+ .....+++|+++++++.++++|+|
T Consensus 55 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld 134 (297)
T 1okc_A 55 DCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLD 134 (297)
T ss_dssp HHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 457899999999999999999998 6665444444333333 235678999999999999999999
Q ss_pred HHHHHHHcCC------CCCCCHHHHHHHHHHhhchhhhhccchhhhHhhhhhhhhhHhHHHHHHHHHhhhhcchhhhhhh
Q psy16028 66 LVKCRLQVDG------AKYKNLIHGFKVTMAEDGTRGLVRGWAPTFFGYSAQGLGKFGLYEFFKVIYSDILGEEAAYLYR 139 (340)
Q Consensus 66 ~ik~r~Q~~~------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 139 (340)
++|+|+|++. ..+++.++++++++++||++|||||+.|++++.++..+++|.+||.+|+.+.+.. ...
T Consensus 135 ~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~------~~~ 208 (297)
T 1okc_A 135 FARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK------NVH 208 (297)
T ss_dssp HHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG------CSC
T ss_pred HHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC------Ccc
Confidence 9999999974 3578999999999999999999999999999999999999999999999764321 122
Q ss_pred hHHHHHHHHHHHHHHHHhhCcHHHHHHHHhcCCC------CcCcHHHHHHHHHHhhchhHhhcchhHHHHhHhhhhhhhH
Q psy16028 140 TGLYLAASASAEFFADIALSPFEAIKVKVQTTAG------FATTLREAAPKMFAQEGVNAFFKSLVPLWGRQIPYTMMKF 213 (340)
Q Consensus 140 ~~~~~~~g~~ag~~~~~v~~Ple~iktr~q~~~~------~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~~ 213 (340)
....+++|++||++++++++|+|+||+|+|++.. .|.++.+|+++|+++||++|||||+.++++|. +..+++|
T Consensus 209 ~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f 287 (297)
T 1okc_A 209 IIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVL 287 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeee
Confidence 4667889999999999999999999999998742 58899999999999999999999999999996 5789999
Q ss_pred HhHHHHHHH
Q psy16028 214 ACFEKTVEL 222 (340)
Q Consensus 214 ~~ye~~~~~ 222 (340)
.+||.+|+.
T Consensus 288 ~~ye~~k~~ 296 (297)
T 1okc_A 288 VLYDEIKKF 296 (297)
T ss_dssp HHHHTC---
T ss_pred hHHHHHHhh
Confidence 999998865
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=62.05 E-value=24 Score=23.49 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=24.9
Q ss_pred HhcCCCCcCcHHHHHHHHHHhhchh----HhhcchhHHHHhHh
Q psy16028 168 VQTTAGFATTLREAAPKMFAQEGVN----AFFKSLVPLWGRQI 206 (340)
Q Consensus 168 ~q~~~~~~~~~~~~~~~i~~~~G~~----gly~G~~~~l~~~~ 206 (340)
||++.++++++-+-+..++.+.|+. .+|.|++..+.|..
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 5777788888888889999988864 58888887766543
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=29.36 E-value=89 Score=21.14 Aligned_cols=40 Identities=3% Similarity=-0.039 Sum_probs=31.2
Q ss_pred chhHhhcchhHHHHhHhhhhhhhHHhHHHHHHHHHhccCC
Q psy16028 190 GVNAFFKSLVPLWGRQIPYTMMKFACFEKTVELLYAHIVP 229 (340)
Q Consensus 190 G~~gly~G~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~~~ 229 (340)
|+-..+|-+...++..+|..++.+.+|+..++.-.....+
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555666677778889999999999999999887766543
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=27.30 E-value=56 Score=22.13 Aligned_cols=35 Identities=9% Similarity=0.370 Sum_probs=29.9
Q ss_pred hchhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16028 284 IGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKVAF 318 (340)
Q Consensus 284 eG~~~lyrG~~~~~~~~~~~~~~~~~~~e~~~~~~ 318 (340)
.|+...+|-+...++.++|..++.+.+|+...+..
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 35667778888889999999999999999998876
No 8
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=24.59 E-value=82 Score=19.48 Aligned_cols=40 Identities=25% Similarity=0.131 Sum_probs=23.7
Q ss_pred hhHHHHHHHHcCCCCCCCHHHHHHHHHHhhchhhhhccch
Q psy16028 63 PLDLVKCRLQVDGAKYKNLIHGFKVTMAEDGTRGLVRGWA 102 (340)
Q Consensus 63 Pld~ik~r~Q~~~~~~~~~~~~~~~i~~~~G~~gly~G~~ 102 (340)
-+..||+|+|+-+..-..+...-+.|..-+.-..-|+|-+
T Consensus 10 rlaaiktrlqalggseaelaafekeiaafeselqaykgkg 49 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGKG 49 (73)
T ss_dssp HHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4567999999977544444444445544444445566533
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=22.82 E-value=1e+02 Score=20.87 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=29.7
Q ss_pred hchhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16028 284 IGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKVAF 318 (340)
Q Consensus 284 eG~~~lyrG~~~~~~~~~~~~~~~~~~~e~~~~~~ 318 (340)
.|+...+|-+.-.++.++|..++++.+|+...+..
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 45677777788888899999999999999998876
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=21.92 E-value=1.4e+02 Score=20.21 Aligned_cols=40 Identities=8% Similarity=0.018 Sum_probs=30.5
Q ss_pred chhHhhcchhHHHHhHhhhhhhhHHhHHHHHHHHHhccCC
Q psy16028 190 GVNAFFKSLVPLWGRQIPYTMMKFACFEKTVELLYAHIVP 229 (340)
Q Consensus 190 G~~gly~G~~~~l~~~~~~~~~~~~~ye~~~~~~~~~~~~ 229 (340)
|+-..+|-+.-.++..+|..++.+.+|+..++.-.....+
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rK 72 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCC
Confidence 4555566666777788899999999999999887766543
Done!