RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16028
(340 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 81.9 bits (203), Expect = 1e-19
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 42 YFLLCGMGGIISCGSTHTLITPLDLVKCRLQVDGA----KYKNLIHGFKVTMAEDGTRGL 97
FL + G I+ T+ PLD+VK RLQ A KYK ++ FK E+G RGL
Sbjct: 4 SFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGL 63
Query: 98 VRGWAPTFFGYSAQGLGKFGLYEFFKVIYSDIL 130
+G P + FG YE K + L
Sbjct: 64 YKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 59.6 bits (145), Expect = 1e-11
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 143 YLAASASAEFFADIALSPFEAIKVKVQTTAGFA----TTLREAAPKMFAQEGVNAFFKSL 198
L A A A P + +K ++Q++A + + K++ +EG+ +K L
Sbjct: 8 SLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGL 67
Query: 199 VPLWGRQIPYTMMKFACFEKTVELL 223
+P R P + F +E +LL
Sbjct: 68 LPNLLRVAPAAAIYFGTYETLKKLL 92
Score = 56.1 bits (136), Expect = 3e-10
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 241 LIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGA------TVGDIVKKI----GFGGLW 290
+ + AG IAG A V++P D + ++L + D KKI G GL+
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLY 64
Query: 291 KGLGPRIIMIGTLTALQWFIYDFVKVAF 318
KGL P ++ + A+ + Y+ +K
Sbjct: 65 KGLLPNLLRVAPAAAIYFGTYETLKKLL 92
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 42.6 bits (100), Expect = 1e-04
Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 28/247 (11%)
Query: 50 GIISCGSTHTLITPLDLVKCRLQVDGAKYKNLIHGFKVTMAEDGTRGLVRGWAPTFFGYS 109
G +S ++ P+D +K +Q K + + + L G PT G
Sbjct: 10 GALSGVIVDAVLYPIDSIKTNIQA------------KKSFSFSDIKKLYSGILPTLVGTV 57
Query: 110 AQGLGKFGLYEFFKVIYSDILGEEAAYLYRTGLYLAASASAEFFADIALSPFEAIKVKVQ 169
+ YE K +L E + +T LYL +++ AE A I PFE +K +Q
Sbjct: 58 PASAFFYCFYELSK----KLLTEYRENISKTNLYLISTSIAEITACIVRLPFEIVKQNMQ 113
Query: 170 TTAGFATTLREAAPKMFAQEGVNAFF-KSLVPLWGRQIPYTMMKFACFEKTVELLYAHIV 228
+ G + L+ ++ +EG+ +F KS + R+IP+ +++ +E E
Sbjct: 114 VS-GNISVLK-TIYEITQREGLPSFLGKSYFVMIVREIPFDCIQYFLWETLKEK-----A 166
Query: 229 PKPRDQCSKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSK---LNQEKGATVGDIVKKIG 285
K + SK I + G +AG ++ P D + S+ + TV +I ++ G
Sbjct: 167 KKDFGKFSKKYPSITSAICGGLAGGIAGFLTTPVDVIKSRQIIYGKSYIETVTEIAEE-G 225
Query: 286 FGGLWKG 292
+ +KG
Sbjct: 226 YLTFYKG 232
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 34.0 bits (78), Expect = 0.080
Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 35/169 (20%)
Query: 47 GMGGIISCGSTHTLITPLDLVKCRLQVDGAK-----YKNLIHGFKVTMAEDGTRGLVRGW 101
G+ G S ++ PLD + RL D K + L + G L +G
Sbjct: 121 GLAGASSLL----IVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQG- 175
Query: 102 APTFFGYSAQGL-----GKFGLYEFFK-VIYSDILGEEAAYLYRTGLYLAASASAEFFAD 155
FG S QG+ FGLY+ K +++ + Y + A + + A
Sbjct: 176 ----FGVSVQGIIVYRGAYFGLYDSAKALLFGNDKNTNILYKW------AVAQTVTILAG 225
Query: 156 IALSPFEAIKVKVQTTAG--------FATTLREAAPKMFAQEGVNAFFK 196
+ PF+ ++ ++ +G + TL + K+ EG+ FFK
Sbjct: 226 LISYPFDTVRRRMMMMSGRKAKSEIQYTGTL-DCWKKILKNEGLGGFFK 273
>gnl|CDD|218260 pfam04776, DUF626, Protein of unknown function (DUF626). Protein
of unknown function, currently only identified in
Brassicaceae.
Length = 116
Score = 31.7 bits (72), Expect = 0.17
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 120 EFFKVIYSDILGEEAAYLYRTGLYLAASASAEFFADIALSPFEAIKVKVQTT 171
F+ V S++ + LY LA ++ +LSP + +KV V+TT
Sbjct: 16 RFYLVKESELQENDWIRLY---AELALASRWRGHILDSLSPLKILKVAVETT 64
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in class IX myosins. Class IX
myosins contain a characteristic head domain, a neck
domain, a tail domain which contains a C6H2-zinc binding
motif and a RhoGAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing
neurons. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 29.7 bits (67), Expect = 1.4
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 197 SLVPLWGRQIPYTMMKFACFEKTVELLYAHIVPKPRDQ 234
S++ W R++P +M F +E L A + + +++
Sbjct: 72 SVLKQWLRELPEPLMTFELYE---NFLRAMELEEKQER 106
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 29.8 bits (67), Expect = 2.1
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 43 FLLCGMGGIISCGSTHTLITPLDLVKCRL--------QVDGAKYKNLIHGFKVTMAEDGT 94
FL G G + + L+LV CR + Y+ L GF M
Sbjct: 284 FLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGF---MDRVMG 340
Query: 95 RGLVRGWAP 103
RGLV GWAP
Sbjct: 341 RGLVCGWAP 349
>gnl|CDD|131312 TIGR02259, benz_CoA_red_A, benzoyl-CoA reductase, bcr type, subunit
A. This model describes A, or gamma, subunit of the bcr
type of benzoyl-CoA reductase, a 4-subunit enzyme. Many
aromatic compounds are metabolized by way of
benzoyl-CoA. This family shows strong sequence
similarity to the 2-hydroxyglutaryl-CoA dehydratase
alpha chain and to subunits of different types of
benzoyl-CoA reductase (such as the bzd type).
Length = 432
Score = 28.8 bits (64), Expect = 4.0
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 118 LYEFFKVIYSDILGEEAAYLYRTGLYLAASASAEFFADIALSPFEAIKVKVQTTAGFA 175
+ E I++ + EEAA L+ A ++FF DIA S F V G A
Sbjct: 114 IQEALHEIFARLREEEAAKLFAPD----AKRKSDFFRDIAGSRFHQHAEAVARAMGIA 167
>gnl|CDD|152694 pfam12259, DUF3609, Protein of unknown function (DUF3609). This
domain family is found in eukaryotes and viruses, and is
typically between 348 and 360 amino acids in length.
Length = 361
Score = 28.6 bits (64), Expect = 4.3
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 267 SKLNQEKGATVGDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKVAFGIPRPPPP 326
KL+QEK V D + ++ + P I++I L +L W + + P
Sbjct: 283 LKLDQEKLEAVED------YPMVFIAVCPAIVLIALLISLGWLYRTHRRRQLRAAQRPVN 336
Query: 327 EMPASLKAKLEGRS 340
E+ K E R+
Sbjct: 337 EVDGLQDTKNETRT 350
>gnl|CDD|188283 TIGR03130, malonate_delta, malonate decarboxylase acyl carrier
protein. Members of this protein family are the acyl
carrier protein, also called the delta subunit, of
malonate decarboxylase. This subunit has the same
covalently bound prosthetic group, derived from and
similar to coenzyme A, as does citrate lyase, although
this protein and the acyl carrier protein of citrate
lyase do not show significant sequence similarity. Both
malonyl and acetyl groups are transferred to the
prosthetic group for catalysis.
Length = 98
Score = 26.9 bits (60), Expect = 5.6
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 272 EKGATVGDIVKKI-GFGGLWKGLGPRIIMIGTLTALQWFIYDF 313
G T IV + GF +W+ + R L LQ I DF
Sbjct: 38 LGGKTEVQIVTSVDGFDAVWQAVLERFFARYPLAGLQIEINDF 80
>gnl|CDD|182457 PRK10434, srlR, DNA-bindng transcriptional repressor SrlR;
Provisional.
Length = 256
Score = 28.1 bits (63), Expect = 6.5
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 18 SQAKCAGVSNVILPGDSCAFGSLKYFLLCGMGGIISCGSTHTLIT 62
S+A C +IL DS FG ++C + + LIT
Sbjct: 192 SKAMCNAAREIILMADSSKFGRKSPNVVCSLEKV------DKLIT 230
>gnl|CDD|215912 pfam00423, HN, Haemagglutinin-neuraminidase.
Length = 545
Score = 28.5 bits (64), Expect = 6.6
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 242 IVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGATVGDIVKKIGFGGLWKGLGPRIIMIG 301
++ A I + A +S + ++ VK I L L P+ +IG
Sbjct: 11 LIILIAIIIIRIHSATISTGEIQNILNTLLSITESIDHQVKDIS--SLISELTPKFKIIG 68
Query: 302 TLTALQ 307
L
Sbjct: 69 DEVGLT 74
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 28.0 bits (63), Expect = 8.0
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 247 AGYIAGVFCAIVSHPADTLVSKLNQEKGATVGDIVKKI 284
A +IA + CA+ +HP L+S+ EK ++ DIV I
Sbjct: 253 ASHIA-LECALQTHPNICLISEEVAEKKMSLQDIVHYI 289
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 27.9 bits (62), Expect = 8.0
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 74 DGAKYKNLIHGFKVTMAEDGTRGLV-RGWAPTFFGYSAQGLGKF 116
+ + Y N+ GF+ +A RGLV RGWAP S + +G F
Sbjct: 325 EESDYSNIPSGFEDRVA---GRGLVIRGWAPQVAILSHRAVGAF 365
>gnl|CDD|165123 PHA02756, PHA02756, hypothetical protein; Provisional.
Length = 164
Score = 27.2 bits (60), Expect = 10.0
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 42 YFLLCGMGGIISCGSTHTLITPLDLVKCRLQVDGAKYKNLIHGFKVTMAEDGTRGLVRGW 101
+F + +GG I S H I PL L+ K N G+ V E GL
Sbjct: 26 FFGIPSVGGFILTPSAHPYIPPLSLII-------TKPSNECEGWAVKFFEGNWLGLFEIH 78
Query: 102 APTFFGYSAQGLGKFGLYEFFKVIYSDILGEEAAYLYR 139
P ++ G ++ ++ +++L Y
Sbjct: 79 LPVVHYFAGVGPVRYEIFNMRASFGNNVLDNIKHYFEA 116
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 27.6 bits (62), Expect = 10.0
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 251 AGVFCAIVSHPADTLVSKLNQEKGATVGDIVKKI 284
G F AI D L+ +L K + +IVK++
Sbjct: 208 TGTFIAI-----DILLQQLEAGKEVDIFEIVKEL 236
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.432
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,541,268
Number of extensions: 1703461
Number of successful extensions: 1950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1944
Number of HSP's successfully gapped: 25
Length of query: 340
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 242
Effective length of database: 6,590,910
Effective search space: 1595000220
Effective search space used: 1595000220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.5 bits)