RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16028
(340 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 129 bits (327), Expect = 2e-35
Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 40/296 (13%)
Query: 43 FLLCGMGGIISCGSTHTLITPLDLVKCRLQVDG-----------AKYKNLIHGFKVTMAE 91
FL G I+ T PLD K RLQ+ G A+Y+ ++ +
Sbjct: 5 FLGAGTAACIADLITF----PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 92 DGTRGLVRGWAPTFFGYSAQGLGKFGLYEFFKVIYSDILGEEAAYLYRTGLYLAASASAE 151
+G R L G + + GLY+ K Y+ G E A + L A ++
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK--GSEHAGIGSR---LLAGSTTG 115
Query: 152 FFADIALSPFEAIKVKVQTTAGFATTLR-----EAAPKMFAQEGVNAFFKSLVPLWGRQI 206
A P + +KV+ Q A R EA + +EG+ +K P R
Sbjct: 116 ALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175
Query: 207 PYTMMKFACFEKTVELLYAHIVPKPRDQCSKGEQLIVTFAAGYIAGVFCAIVSHPADTLV 266
+ ++ + L + + L F + + AG +++ P D +
Sbjct: 176 IVNCAELVTYDLIKDTLLKANLMT--------DDLPCHFTSAFGAGFCTTVIASPVDVVK 227
Query: 267 SKL-NQEKGA--TVGDIVKKI----GFGGLWKGLGPRIIMIGTLTALQWFIYDFVK 315
++ N G + G + G +KG P + +G+ + + Y+ +K
Sbjct: 228 TRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLK 283
Score = 95.8 bits (239), Expect = 7e-23
Identities = 40/192 (20%), Positives = 81/192 (42%), Gaps = 19/192 (9%)
Query: 44 LLCGMG-GIISCGSTHTLITPLDLVKCRLQVDGA-----KYKNLIHGFKVTMAEDGTRGL 97
LL G G ++ + P D+VK R Q +Y++ + +K E+G RGL
Sbjct: 108 LLAGSTTGALAV----AVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGL 163
Query: 98 VRGWAPTFFGYSAQGLGKFGLYEFFK--VIYSDILGEEAAYLYRTGLYLAASASAEFFAD 155
+G +P + + Y+ K ++ ++++ ++ + ++ A F
Sbjct: 164 WKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDD------LPCHFTSAFGAGFCTT 217
Query: 156 IALSPFEAIKVKVQ-TTAGFATTLREAAPKMFAQEGVNAFFKSLVPLWGRQIPYTMMKFA 214
+ SP + +K + + G + A M +EG AF+K +P + R + ++ F
Sbjct: 218 VIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFV 277
Query: 215 CFEKTVELLYAH 226
+E+ L A
Sbjct: 278 TYEQLKRALMAA 289
Score = 50.0 bits (120), Expect = 4e-07
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 17/103 (16%)
Query: 241 LIVTFAAGYIAGVFCAIVSHPADTL---------------VSKLNQEKG--ATVGDIVKK 283
+ V F A +++ P DT + Q +G T+ +V+
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 284 IGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKVAFGIPRPPPP 326
G L+ GL + + +++ +YD VK +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG 103
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 117 bits (295), Expect = 8e-31
Identities = 62/308 (20%), Positives = 102/308 (33%), Gaps = 49/308 (15%)
Query: 38 GSLKYFLLCGMGGIISCGSTHTLITPLDLVKCRLQVDGA--------KYKNLIHGFKVTM 89
LK FL G+ IS T + P++ VK LQV A +YK +I
Sbjct: 6 SFLKDFLAGGVAAAIS----KTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61
Query: 90 AEDGTRGLVRGWAPT---FFGYSAQGLGKFGLYEFFKVIYSDILGEEAAYLYRTGLYLAA 146
E G RG +F A F + +K I+ + + LA+
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQAL---NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLAS 118
Query: 147 SASAEFFADIALSPFEAIKVKVQTTAGFA------TTLREAAPKMFAQEGVNAFFKSLVP 200
+A + + P + + ++ G T L K+F +G+ ++
Sbjct: 119 GGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNV 178
Query: 201 -LWGRQIPYTMMKFACFEKTVELLYAHIVPKPRDQCSKGEQLIVTFAAGYIAGVFCAIVS 259
+ G I Y F ++ K K +IV++ +VS
Sbjct: 179 SVQG-IIIYRAAYFGVYDTA----------KGMLPDPKNVHIIVSWMIAQTVTAVAGLVS 227
Query: 260 HPADTL--------VSKLNQEKGATVGDIVKKI----GFGGLWKGLGPRIIMIGTLTALQ 307
+P DT+ K D +KI G +KG ++ G A
Sbjct: 228 YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFV 286
Query: 308 WFIYDFVK 315
+YD +K
Sbjct: 287 LVLYDEIK 294
Score = 83.8 bits (208), Expect = 1e-18
Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 29/192 (15%)
Query: 47 GMGGIISCGSTHTLITPLDLVKCRLQVDGAK------YKNLIHGFKVTMAEDGTRGLVRG 100
G G S + PLD + RL D K + L + DG RGL +G
Sbjct: 120 GAAGATSL----CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQG 175
Query: 101 WAPTFFG---YSAQGLGKFGLYEFFKVIYSDILGEEAAYLYRTGLYLAASASAEFFADIA 157
+ + G Y A FG+Y+ K + D + + A +
Sbjct: 176 FNVSVQGIIIYRA---AYFGVYDTAKGMLPDPKNVHIIVS------WMIAQTVTAVAGLV 226
Query: 158 LSPFEAIKVKVQTTAGFA------TTLREAAPKMFAQEGVNAFFKSLVPLWGRQIPYTMM 211
PF+ ++ ++ +G T + K+ EG AFFK R + +
Sbjct: 227 SYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV 286
Query: 212 KFACFEKTVELL 223
+++ + +
Sbjct: 287 -LVLYDEIKKFV 297
Score = 56.1 bits (136), Expect = 3e-09
Identities = 39/211 (18%), Positives = 72/211 (34%), Gaps = 28/211 (13%)
Query: 143 YLAASASAEFFADIALSPFEAIKVKVQTTAGFATT--------LREAAPKMFAQEGVNAF 194
A A + A++P E +K+ +Q + + ++ ++G +F
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 195 FKSLVPLWGRQIPYTMMKFACFEKTVELLYAHIVPKPRDQCSKGEQLIVT-FAAGYIAGV 253
++ + R P + FA +K Y I D+ + + A+G AG
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDK-----YKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 124
Query: 254 FCAIVSHPADTL--------VSKLNQEKGATVGDIVKKI----GFGGLWKGLGPRIIMIG 301
+P D Q + +G+ + KI G GL++G + I
Sbjct: 125 TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGII 184
Query: 302 TLTALQWFIYDFVKVAFGIPRPPPPEMPASL 332
A + +YD K P P + S
Sbjct: 185 IYRAAYFGVYDTAKGML--PDPKNVHIIVSW 213
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 59/164 (35%)
Query: 130 LGEEAAYLYRTGLYLAASASAEFFADIALSPFEAIKVKVQT---TAGFATTLREAAPKMF 186
LGE AA LA+ A ++V V T A E +
Sbjct: 1764 LGEYAA--------LASLADVMSIES-------LVEV-VFYRGMTMQVAVPRDELGRSNY 1807
Query: 187 AQEGVNAFFKSLVPLWGRQIPYTMMKFACFEKTVELLYAHIVPKPRDQC------SKGEQ 240
+N P + ++ ++ + + + + +Q
Sbjct: 1808 GMIAIN--------------PGRVAASFS-QEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 241 LIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGATVGDIVKKI 284
+ AG + + DT+ + LN K ++KI
Sbjct: 1853 YVA---AGDLRAL---------DTVTNVLNFIK-------LQKI 1877
Score = 39.3 bits (91), Expect = 0.002
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 53/165 (32%)
Query: 173 GFATTLREAAPKMFAQEGVNAFFKSLVPLWGRQIPYTMMKF----ACF-----EKTVELL 223
G TLR K A G++ +S +P R++ ++ +F + F +L+
Sbjct: 388 GLNLTLR----KAKAPSGLD---QSRIPFSERKLKFSN-RFLPVASPFHSHLLVPASDLI 439
Query: 224 YAHIVPKPRDQCSKGEQLIV----TF-------AAGYIAGVFC-AIVSHPAD-TLVSKLN 270
+ + + + + TF +G I+ I+ P ++
Sbjct: 440 NKDL--VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF- 496
Query: 271 QEKGAT------------VGDIVKKIGFGGLWKGLGPRIIMIGTL 303
AT +G + + G G R+I+ GTL
Sbjct: 497 ---KATHILDFGPGGASGLGVLTHRN-----KDGTGVRVIVAGTL 533
Score = 36.2 bits (83), Expect = 0.016
Identities = 35/182 (19%), Positives = 50/182 (27%), Gaps = 62/182 (34%)
Query: 133 EAAYLYRTGLYLAASASAEFFADIALSPFEAIKVKVQTTAGFATTLREAAPKMFAQEGVN 192
E L T + AS E F I P T GFA + P
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEP----------TEGFA---ADDEP--------- 54
Query: 193 AFFKSLVPLWGRQIPYTMMK----------------FACFEKT------VELLYAHIVPK 230
+ L G+ + Y FE + L A ++ +
Sbjct: 55 ---TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 231 PRDQCSKGEQLIVTFAAGYIAGVFCAIVSHPADTLV-SKLNQ---EKGATVGDIVKKIGF 286
K ++LI + A + P D S L + E A + I F
Sbjct: 112 NDTTLVKTKELIKNY---ITA---RIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----F 160
Query: 287 GG 288
GG
Sbjct: 161 GG 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.019
Identities = 48/403 (11%), Positives = 93/403 (23%), Gaps = 148/403 (36%)
Query: 41 KYFLLCGMGG----------------------------IISCGSTHTLITPL-------- 64
K L+ G+ G + +C S T++ L
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 65 -----------------DLVKCRLQ--------------VDGAKYKNLIHGFK------V 87
++ L+ + + + F +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 88 TMAEDGTR--GLVRGWAPTFFGYSAQGLGKFGLYE------FFKVIYSDI--LGEEAAYL 137
T TR + + + + L K + L E
Sbjct: 271 T-----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--- 322
Query: 138 YRTGLYLAASASAEFFADIA--LSPFEAIKVKVQTTAGFATTLREAAP-------KMFA- 187
T S AE D ++ + TT ++L P +
Sbjct: 323 -LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSV 380
Query: 188 -QEGVNAFFKSLVPLWGRQIPYTMMKFAC------------FEKTVEL--LYAHIVPKPR 232
+ L +W I +M E T+ + +Y + K
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 233 DQ---------------CSKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGATV 277
++ + LI + Y + I H L + + E+
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF---YSHIGHH----LKNIEHPERMTLF 493
Query: 278 GDIV-------KKIGFGGL-WKGLGPRIIMIGTLTALQWFIYD 312
+ +KI W G + + L + +I D
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Score = 32.9 bits (74), Expect = 0.17
Identities = 35/276 (12%), Positives = 70/276 (25%), Gaps = 74/276 (26%)
Query: 77 KYKNLIHGFKVTMAEDGTRGLVRGWAPTFFGYSAQGLGKFGLYEFFKVIYS-----DILG 131
+YK+++ F+ ++ F Q + K I S I+
Sbjct: 17 QYKDILSVFEDAFVDN------------FDCKDVQ--------DMPKSILSKEEIDHIIM 56
Query: 132 E----EAAYLYRTGLYLAASASAEFFADIALSP-----FEAIKVKVQTTAGFATTLREAA 182
L + F + L IK + + + E
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 183 PKMFAQEGVNAFFKSLVPLWGRQIPYTMMKFACFEKTVELLYAHIVPKPRDQCSKGEQLI 242
+++ F K V R PY ++ + L + + ++
Sbjct: 117 DRLY--NDNQVFAKYNVS---RLQPYLKLR--------QALL---------ELRPAKNVL 154
Query: 243 VTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGATVGDIVKKIGFGGLWKGLGPRIIMIGT 302
+ G +G + + + K+ F W L
Sbjct: 155 IDGVLG--SG---------KTWVALDVCLSY-----KVQCKMDFKIFWLNLKNCNSPETV 198
Query: 303 LTALQWFIYDFVK--VAFGIPRPPPPEMPASLKAKL 336
L LQ +Y + S++A+L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase;
transition state, inhibitor, hydrolase; HET: MTM; 1.60A
{Streptococcus pneumoniae R6} PDB: 3mms_A*
Length = 230
Score = 27.9 bits (62), Expect = 3.9
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 287 GGLWKGLGPRIIMIGTLTALQWFIYDFVKVAFGIPRPPPPEMPASLKA 334
G + +G+ ++I + +D AFG + P ++
Sbjct: 78 GAVAEGIAVGDVVIAD----KLAYHDVDVTAFGYAYGQMAQQPLYFES 121
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain,
kinase inhibitor complex, transferase; HET: 5CN; 1.80A
{Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A*
3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Length = 333
Score = 27.6 bits (62), Expect = 5.7
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 35 CAFGSLKYFLLC---GMGGIISCGSTHTLITPLDLVKCRLQV-DGAKY---KNLIH 83
C +G L FL + + ++ + DL+ QV G + KN IH
Sbjct: 132 CCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIH 187
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter
pylori} PDB: 3nm5_A* 3nm4_A*
Length = 230
Score = 26.9 bits (60), Expect = 8.0
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 287 GGLWKGLGPRIIMIGTLTALQWFIYDFVKVAFGIPRPPPPEMPASLKA 334
G L K L +++ T Q +D AF P PE ++
Sbjct: 80 GSLVKDLKINDLLVAT----QLVQHDVDLSAFDHPLGFIPESAIFIET 123
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 27.2 bits (61), Expect = 8.4
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 156 IALSPFEAIKVK-------VQTTAGFATTLREAAPKMFAQEG----VNAFFKSLVPLWGR 204
I L E + +K +Q +A + + P M ++ + L P W R
Sbjct: 104 INLGSIEEVPLKRFDLMNGIQVRGTYAVS-QSCIPHMKGRDNPHILTLSPPIRLEPKWLR 162
Query: 205 QIPYTMMKFA 214
PY M K+
Sbjct: 163 PTPYMMAKYG 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.432
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,366,587
Number of extensions: 330661
Number of successful extensions: 981
Number of sequences better than 10.0: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 27
Length of query: 340
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 246
Effective length of database: 4,077,219
Effective search space: 1002995874
Effective search space used: 1002995874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.1 bits)