RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16028
         (340 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 88.2 bits (217), Expect = 1e-20
 Identities = 59/299 (19%), Positives = 97/299 (32%), Gaps = 41/299 (13%)

Query: 40  LKYFLLCGMGGIISCGSTHTLITPLDLVKCRLQVDGA--------KYKNLIHGFKVTMAE 91
           LK FL  G+   IS     T + P++ VK  LQV  A        +YK +I        E
Sbjct: 7   LKDFLAGGVAAAIS----KTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKE 62

Query: 92  DGTRGLVRGWAPTFFGYSAQGLGKFGLYEFFKVIYSDILGEEAAYLYRTGLYLAASASAE 151
            G     RG       Y       F   + +K I+   +     +       LA+  +A 
Sbjct: 63  QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAG 122

Query: 152 FFADIALSPFEAIKVKVQTTAGFATTLRE------AAPKMFAQEGVNAFFKSLVPLWGRQ 205
             +   + P +  + ++    G     RE         K+F  +G+   ++         
Sbjct: 123 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 182

Query: 206 IPYTMMKFACFEKTVELLYAHIVPKPRDQCSKGEQLIVTFAAGYIAGVFCAIVSHPADTL 265
           I Y    F            +   K      K   +IV++           +VS+P DT+
Sbjct: 183 IIYRAAYFGV----------YDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTV 232

Query: 266 VSKLNQEKGATVGD------------IVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYD 312
             ++  + G    D            I K  G    +KG    ++  G   A    +YD
Sbjct: 233 RRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYD 290


>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 288

 Score = 29.0 bits (64), Expect = 0.87
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 14/79 (17%)

Query: 206 IPYTMMKFACFEKTVELLYAHIVPKPRDQCSKGEQLIVTFAAGYIAGVFCAIVSHPADTL 265
           +P+T +    F K V+             CS G             G F  I     D +
Sbjct: 197 VPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAG---------VGRTGTFVVI-----DAM 242

Query: 266 VSKLNQEKGATVGDIVKKI 284
           +  ++ E+   V   V +I
Sbjct: 243 LDMMHSERKVDVYGFVSRI 261


>d1zdya1 d.313.1.1 (A:3-303) Aromatic prenyltransferase
           {Streptomyces sp. CL190 [TaxId: 93372]}
          Length = 301

 Score = 27.5 bits (61), Expect = 2.1
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 304 TALQWFIYDFVKVAFGIPRPPPPEMPASLKAKLE 337
             L W      ++ F +    P  +P+S +  +E
Sbjct: 215 PTLNWETGKIDRLCFAVISNDPTLVPSSDEGDIE 248


>d2exha1 b.29.1.23 (A:325-535) Beta-D-xylosidase C-terminal domain
           {Geobacillus stearothermophilus [TaxId: 1422]}
          Length = 211

 Score = 25.4 bits (55), Expect = 9.4
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 73  VDGAKYKNLIHGFKVTMAEDGTRGLVRGWAPTFFG---YSAQGLGKFGLYEFFKVIYSDI 129
            DG  + +L   F+     D        +   F G       G   +  +++F   Y ++
Sbjct: 154 FDGMNWIDLPVTFESYKLSDDYIKSRAAFTGAFVGMHCRDGSGQNNYADFDYFL--YKEL 211


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,292,838
Number of extensions: 60645
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 7
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.5 bits)