BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16029
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 20 NIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQWSLVY 79
+IRD+ DS + + A + + I I+ DLF G +T+ + WSL+Y
Sbjct: 250 HIRDITDSLIEHCQEKQLDENANVQLSDEKII----NIVLDLFGAGFDTVTTAISWSLMY 305
Query: 80 MMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIHAVTR 139
++ P V + +Q+ELDTV+GR+R P L D LPY EA ILET R SS V H+ TR
Sbjct: 306 LVMNPRVQRKIQEELDTVIGRSRRPRLSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTR 365
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 54/90 (60%)
Query: 50 PIAKCKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDM 109
P K ++ D+F G +T+ + WSL+Y++ P + + +Q ELDTV+GR R P L D
Sbjct: 279 PQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDTVIGRERRPRLSDR 338
Query: 110 PFLPYTEATILETLRRSSVVALGTIHAVTR 139
P LPY EA ILET R SS + H+ TR
Sbjct: 339 PQLPYLEAFILETFRHSSFLPFTIPHSTTR 368
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Query: 5 FRRRSTSTAPLLTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQI---IGDL 61
F R S P P RDM+D++ + K AA HG + + I D+
Sbjct: 236 FLRHCESLRPGAAP---RDMMDAFILSAE-----KKAAGDSHGGGARLDLENVPATITDI 287
Query: 62 FSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILE 121
F +T+ LQW L+ YP V VQ ELD VVGR+RLP + D P LPY A + E
Sbjct: 288 FGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRLPCMGDQPNLPYVLAFLYE 347
Query: 122 TLRRSSVVALGTIHAVT 138
+R SS V + HA T
Sbjct: 348 AMRFSSFVPVTIPHATT 364
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P + RD +DS+ +R K T + KN + +LF G ET+ TL++
Sbjct: 237 LDPNSPRDFIDSFLIRMQEEE--KNPNTEFYLKNLVMTTL----NLFFAGTETVSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+ +M +P V V +E+D V+G+NR P ED +PYTEA I E R ++ +G H
Sbjct: 291 GFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYTEAVIHEIQRFGDMLPMGLAH 350
Query: 136 AVTR 139
V +
Sbjct: 351 RVNK 354
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P N RD +D Y +R + ++ H +N I + LF+ G ET TL++
Sbjct: 237 LDPSNPRDFIDVYLLRMEKDK--SDPSSEFHHQNLIL----TVLSLFAAGTETTSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+ M+ YP V + VQ E++ V+G +R P L+D +PYT+A I E R ++ G H
Sbjct: 291 GFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPH 350
Query: 136 AVTR 139
VT+
Sbjct: 351 TVTK 354
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Query: 3 AYFRRRSTSTAPLLTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLF 62
+Y R + L N RD +D + ++ + + + + +N + + DLF
Sbjct: 224 SYIREKVKEHQASLDVNNPRDFIDCFLIKMEQEKDNQKSEFNI--ENLVG----TVADLF 277
Query: 63 STGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILET 122
G ET TL++ L+ ++ +P V VQ+E+D V+GR+R P ++D +PYT+A + E
Sbjct: 278 VAGTETTSTTLRYGLLLLLKHPEVTAKVQEEIDHVIGRHRSPCMQDRSHMPYTDAVVHEI 337
Query: 123 LRRSSVVALGTIHAVT 138
R S +V G HAVT
Sbjct: 338 QRYSDLVPTGVPHAVT 353
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P N RD +D Y +R + ++ H +N I + LF G ET TL++
Sbjct: 237 LDPSNPRDFIDVYLLRMEKDK--SDPSSEFHHQNLIL----TVLSLFFAGTETTSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+ M+ YP V + VQ E++ V+G +R P L+D +PYT+A I E R ++ G H
Sbjct: 291 GFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPH 350
Query: 136 AVTR 139
VT+
Sbjct: 351 TVTK 354
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P N RD +D Y +R + ++ H +N I + LF G ET TL++
Sbjct: 237 LDPSNPRDFIDVYLLRMEKDK--SDPSSEFHHQNLIL----TVLSLFFAGTETTSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+ M+ YP V + VQ E++ V+G +R P L+D +PYT+A I E R ++ G H
Sbjct: 291 GFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPH 350
Query: 136 AVTR 139
VT+
Sbjct: 351 TVTK 354
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P N RD +D Y +R + ++ H +N I + LF G ET TL++
Sbjct: 237 LDPSNPRDFIDVYLLRMEKDK--SDPSSEFHHQNLIL----TVLSLFFAGTETTSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+ M+ YP V + VQ E++ V+G +R P L+D +PYT+A I E R ++ G H
Sbjct: 291 GFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPH 350
Query: 136 AVTR 139
VT+
Sbjct: 351 TVTK 354
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P N RD +D Y +R + ++ H +N I + LF G ET TL++
Sbjct: 237 LDPSNPRDFIDVYLLRMEKDK--SDPSSEFHHQNLIL----TVLSLFFAGTETTSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+ M+ YP V + VQ E++ V+G +R P L+D +PYT+A I E R ++ G H
Sbjct: 291 GFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPH 350
Query: 136 AVTR 139
VT+
Sbjct: 351 TVTK 354
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%)
Query: 57 IIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTE 116
++ DLFS GM T TL W L+ M+ +P V + VQ E+D V+G+ R P + D +PYT
Sbjct: 276 VVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTT 335
Query: 117 ATILETLRRSSVVALGTIHAVTR 139
A I E R +V LG H +R
Sbjct: 336 AVIHEVQRFGDIVPLGVTHMTSR 358
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%)
Query: 57 IIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTE 116
++ DLFS GM T TL W L+ M+ +P V + VQ E+D V+G+ R P + D +PYT
Sbjct: 276 VVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTT 335
Query: 117 ATILETLRRSSVVALGTIHAVTR 139
A I E R +V LG H +R
Sbjct: 336 AVIHEVQRFGDIVPLGMTHMTSR 358
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P + RD +DS+ +R K T + KN + +LF G ET+ TL++
Sbjct: 237 LDPNSPRDFIDSFLIRMQEEE--KNPNTEFYLKNLVMTTL----NLFFAGTETVSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+ +M +P V V +E+D V+G+NR P ED +PY EA I E R V+ +G
Sbjct: 291 GFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMGLAR 350
Query: 136 AVTR 139
V +
Sbjct: 351 RVKK 354
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 73.2 bits (178), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 IGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEA 117
+G+L G ET N L+W++++M YP + VQ E+D ++G N P+ +D +PYTEA
Sbjct: 278 VGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEA 337
Query: 118 TILETLRRSSVVALGTIHAVT 138
+ E LR ++V LG HA +
Sbjct: 338 VLHEVLRFCNIVPLGIFHATS 358
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 72.8 bits (177), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 58 IGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEA 117
+G+L G ET N L+W++++M YP + VQ E+D ++G N P+ +D +PYTEA
Sbjct: 278 VGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEA 337
Query: 118 TILETLRRSSVVALGTIHAVT 138
+ E LR ++V LG HA +
Sbjct: 338 VLHEVLRFCNIVPLGIFHATS 358
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P + RD +DS+ +R K T + KN + Q LF G ET+ TL++
Sbjct: 237 LDPNSPRDFIDSFLIRMQEEE--KNPNTEFYLKNLVMTTLQ----LFVGGTETVSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVAL 131
+ +M +P V V +E+D V+G+NR P ED +PY EA I E R V+ +
Sbjct: 291 GFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPM 346
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P + RD +DS+ +R K T + KN + Q LF G ET+ TL++
Sbjct: 237 LDPNSPRDFIDSFLIRMQEEE--KNPNTEFYLKNLVMTTLQ----LFIGGTETVSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVAL 131
+ +M +P V V +E+D V+G+NR P ED +PY EA I E R V+ +
Sbjct: 291 GFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPM 346
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P + RD +DS+ +R K T + KN + Q LF G ET+ TL++
Sbjct: 237 LDPNSPRDFIDSFLIRMQEEE--KNPNTEFYLKNLVMTTLQ----LFIGGTETVSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVAL 131
+ +M +P V V +E+D V+G+NR P ED +PY EA I E R V+ +
Sbjct: 291 GFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPM 346
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P + RD +DS+ +R K T + KN + +LF G ET+ TL++
Sbjct: 237 LDPNSPRDFIDSFLIRMQEEE--KNPNTEFYLKNLVMTTL----NLFIGGTETVSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVAL 131
+ +M +P V V +E+D V+G+NR P ED +PY EA I E R V+ +
Sbjct: 291 GFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPM 346
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P RD++D+Y + + + H + LF G ET TL++
Sbjct: 237 LDPSAPRDLIDTYLLHMEKE------KSNAHSEFSHQNLNLNTLSLFFAGTETTSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+ M+ YP VA+ V E++ V+G +R P L D +PYTEA I E R S ++ +G H
Sbjct: 291 GFLLMLKYPHVAERVYREIEQVIGPHRPPELHDRAKMPYTEAVIYEIQRFSDLLPMGVPH 350
Query: 136 AVTR 139
VT+
Sbjct: 351 IVTQ 354
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 9/125 (7%)
Query: 15 LLTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQ 74
LL N RD +D + ++ + + ++ IA + DLF G ET TL+
Sbjct: 236 LLDVNNPRDFIDCFLIKMEQENNLEFTLESL----VIA-----VSDLFGAGTETTSTTLR 286
Query: 75 WSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTI 134
+SL+ ++ +P VA VQ+E++ V+GR+R P ++D +PYT+A I E R ++
Sbjct: 287 YSLLLLLKHPEVAARVQEEIERVIGRHRSPCMQDRSRMPYTDAVIHEIQRFIDLLPTNLP 346
Query: 135 HAVTR 139
HAVTR
Sbjct: 347 HAVTR 351
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 20 NIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQWSLVY 79
N RD +D + ++ + + + + T+ A DL G ET TL+++L+
Sbjct: 242 NPRDFIDCFLIKMEKEKQNQQSEFTIENLVITA------ADLLGAGTETTSTTLRYALLL 295
Query: 80 MMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIHAVT 138
++ +P V VQ+E++ VVGRNR P ++D +PYT+A + E R ++ HAVT
Sbjct: 296 LLKHPEVTAKVQEEIERVVGRNRSPCMQDRGHMPYTDAVVHEVQRYIDLIPTSLPHAVT 354
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 1 MGAYFRRRSTSTAPLLTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGD 60
M +Y + + N +D +D + ++ + + + T+ A D
Sbjct: 223 MKSYILEKVKEHQESMDMNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAV------D 276
Query: 61 LFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATIL 120
LF G ET TL+++L+ ++ +P V VQ+E++ V+GRNR P ++D +PYT+A +
Sbjct: 277 LFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVH 336
Query: 121 ETLRRSSVVALGTIHAVT 138
E R ++ HAVT
Sbjct: 337 EVQRYIDLLPTSLPHAVT 354
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 1 MGAYFRRRSTSTAPLLTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGD 60
M +Y + + N +D +D + ++ + + + T+ A D
Sbjct: 221 MKSYILEKVKEHQESMDMNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAV------D 274
Query: 61 LFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATIL 120
LF G ET TL+++L+ ++ +P V VQ+E++ V+GRNR P ++D +PYT+A +
Sbjct: 275 LFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVH 334
Query: 121 ETLRRSSVVALGTIHAVT 138
E R ++ HAVT
Sbjct: 335 EVQRYIDLLPTSLPHAVT 352
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 63.9 bits (154), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 58 IGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEA 117
IGD+F G+ET + ++W+L +++H P V K + +E+D VG +R PT+ D L EA
Sbjct: 278 IGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEA 337
Query: 118 TILETLRRSSVVALGTIH 135
TI E LR V + H
Sbjct: 338 TIREVLRLRPVAPMLIPH 355
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 4 YFRRRSTSTAPLLTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFS 63
Y R L P RD+ D V + T+ G + DLF
Sbjct: 224 YVSERVKEHHQSLDPNCPRDLTDCLLVEMEKEKHSAERLYTMDG------ITVTVADLFF 277
Query: 64 TGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETL 123
G ET TL++ L+ +M YP + + + +E+D V+G +R+P ++D +PY +A + E
Sbjct: 278 AGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIGPSRIPAIKDRQEMPYMDAVVHEIQ 337
Query: 124 RRSSVVALGTIHAVTR 139
R ++V H TR
Sbjct: 338 RFITLVPSNLPHEATR 353
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 60 DLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVG----RNRLPTLEDMPFLPYT 115
DLF G ET +TL W++ +++H+P + + +Q+ELD +G +R+ T +D LP
Sbjct: 286 DLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRV-TYKDRARLPLL 344
Query: 116 EATILETLRRSSVVALGTIHAVTR 139
ATI E LR VV L H TR
Sbjct: 345 NATIAEVLRLRPVVPLALPHRTTR 368
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 61 LFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATIL 120
F G ET N L ++++ + P + +Q E+D V+G R ED+ L Y +
Sbjct: 251 FFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRLQYLSQVLK 310
Query: 121 ETLR 124
E+LR
Sbjct: 311 ESLR 314
>pdb|1EA1|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With Fluconazole
pdb|1E9X|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With 4-
Phenylimidazole
pdb|1H5Z|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Ferric Low-Spin State
Length = 455
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 17 TPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQWS 76
T + RDMLD K+ + +A + G I +F+ G T T W+
Sbjct: 218 TDKSDRDMLDVLIAVKAETGTPRFSADEITG--------MFISMMFA-GHHTSSGTASWT 268
Query: 77 LVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLR 124
L+ +M + AV DELD + G R + + +P E + ETLR
Sbjct: 269 LIELMRHRDAYAAVIDELDELYGDGRSVSFHALRQIPQLENVLKETLR 316
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 58 IGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEA 117
+ +L +ET N+L W L + P + + E+ +V+ N+ P ED+ +PY +A
Sbjct: 288 VTELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQSVLPDNQTPRAEDLRNMPYLKA 347
Query: 118 TILETLRRSSVVALGT 133
+ E++R + V T
Sbjct: 348 CLKESMRLTPSVPFTT 363
>pdb|2W0A|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor
N-[(1s)-2-Methyl-1-(Pyridin-4-Ylcarbamoyl)propyl]
Cyclohexanecarboxamide
Length = 455
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 17 TPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQWS 76
T + RDMLD K+ + +A + G I +F+ G T T W+
Sbjct: 218 TDKSDRDMLDVLIAVKAETGTPRFSADEITG--------MFISMMFA-GHHTSSGTASWT 268
Query: 77 LVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLR 124
L+ +M + AV DELD + G R + + +P E + ETLR
Sbjct: 269 LIELMRHRDAYAAVIDELDELYGDGRSVSFHALRQIPQLENVLKETLR 316
>pdb|1X8V|A Chain A, Estriol-Bound And Ligand-Free Structures Of Sterol
14alpha- Demethylase (Cyp51)
pdb|2BZ9|A Chain A, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2BZ9|B Chain B, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2CI0|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2CIB|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2VKU|A Chain A, 4,4'-Dihydroxybenzophenone Mimics Sterol Substrate In The
Binding Site Of Sterol 14alpha-Demethylase (Cyp51) In
The X-Ray Structure Of The Complex
pdb|2W09|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor Cis-4-
Methyl-N-[(1s)-3-(Methylsulfanyl)-1-(Pyridin-4-
Ylcarbamoyl)propyl]cyclohexanecarboxamide
pdb|2W0B|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor 3-{[(4-
Methylphenyl)sulfonyl]amino}propyl Pyridin-4-Ylcarbamate
Length = 455
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 17 TPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQWS 76
T + RDMLD K+ + +A + G I +F+ G T T W+
Sbjct: 218 TDKSDRDMLDVLIAVKAETGTPRFSADEITG--------MFISMMFA-GHHTSSGTASWT 268
Query: 77 LVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLR 124
L+ +M + AV DELD + G R + + +P E + ETLR
Sbjct: 269 LIELMRHRDAYAAVIDELDELYGDGRSVSFHALRQIPQLENVLKETLR 316
>pdb|1U13|A Chain A, Crystal Structure Analysis Of The C37lC151TC442A-Triple
Mutant Of Cyp51 From Mycobacterium Tuberculosis
Length = 455
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 17 TPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQWS 76
T + RDMLD K+ + +A + G I +F+ G T T W+
Sbjct: 218 TDKSDRDMLDVLIAVKAETGTPRFSADEITG--------MFISMMFA-GHHTSSGTASWT 268
Query: 77 LVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLR 124
L+ +M + AV DELD + G R + + +P E + ETLR
Sbjct: 269 LIELMRHRDAYAAVIDELDELYGDGRSVSFHALRQIPQLENVLKETLR 316
>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
Length = 467
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 49 NPIAKCK---QIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPT 105
+PI + + Q++ + + G ETI +T+ W L + +P A ++DE++ V G R
Sbjct: 257 DPIGEQEIHDQVVA-ILTPGSETIASTIMWLLQALADHPEHADRIRDEVEAVTG-GRPVA 314
Query: 106 LEDMPFLPYTEATILETLRRSSVVALGTIHAVT 138
ED+ L +T I+E +R V + T AV
Sbjct: 315 FEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVA 347
>pdb|1TKN|A Chain A, Solution Structure Of Cappd, An Independently Folded
Extracellular Domain Of Human Amyloid-Beta Precursor
Protein
Length = 110
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 18 PPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQWSL 77
P ++ +ML Y VR ++ R T H + K I T + I + SL
Sbjct: 28 PRHVFNMLKKY-VRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSL 86
Query: 78 VYMMHYPAVAKAVQDELDTVVGR 100
+ + PAVA+ +QDE+D ++ +
Sbjct: 87 SLLYNVPAVAEEIQDEVDELLQK 109
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 65 GMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLR 124
G ET + L + + + +P V + +Q+E+D V+ PT + + + Y + + ETLR
Sbjct: 284 GYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLR 343
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 65 GMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLR 124
G ET + L + + + +P V + +Q+E+D V+ PT + + + Y + + ETLR
Sbjct: 286 GYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLR 345
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 65 GMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLR 124
G ET + L + + + +P V + +Q+E+D V+ PT + + + Y + + ETLR
Sbjct: 285 GYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLR 344
>pdb|3NYL|A Chain A, The X-Ray Structure Of An Antiparallel Dimer Of The Human
Amyloid Precursor Protein E2 Domain
Length = 210
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 18 PPNIRDMLDSYSVRKSRRPRWKTAATTVHGK--NPIAKCKQIIGDLFSTGMETIKNTLQW 75
P ++ +ML Y VR ++ R T H + +P K QI + T + I +
Sbjct: 127 PRHVFNMLKKY-VRAEQKDRQHTLKHFEHVRMVDP-KKAAQIRSQVM-THLRVIYERMNQ 183
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNR 102
SL + + PAVA+ +QDE+D ++ + +
Sbjct: 184 SLSLLYNVPAVAEEIQDEVDELLQKEQ 210
>pdb|3UMH|A Chain A, X-Ray Structure Of The E2 Domain Of The Human Amyloid
Precursor Protein (App) In Complex With Cadmium
pdb|3UMI|A Chain A, X-Ray Structure Of The E2 Domain Of The Human Amyloid
Precursor Protein (App) In Complex With Zinc
pdb|3UMK|A Chain A, X-Ray Structure Of The E2 Domain Of The Human Amyloid
Precursor Protein (App) In Complex With Copper
Length = 211
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 18 PPNIRDMLDSYSVRKSRRPRWKTAATTVHGK--NPIAKCKQIIGDLFSTGMETIKNTLQW 75
P ++ +ML Y VR ++ R T H + +P K QI + T + I +
Sbjct: 119 PRHVFNMLKKY-VRAEQKDRQHTLKHFEHVRMVDP-KKAAQIRSQVM-THLRVIYERMNQ 175
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNR 102
SL + + PAVA+ +QDE+D ++ + +
Sbjct: 176 SLSLLYNVPAVAEEIQDEVDELLQKEQ 202
>pdb|2X2N|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|C Chain C, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|D Chain D, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
Length = 475
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 54 CKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAK---AVQDELDTVVGR-NRLPTLEDM 109
C I+ +F+ G T T WS++++MH PA K A++ E++ + N +++M
Sbjct: 268 CGMIVAAMFA-GQHTSSITTTWSMLHLMH-PANVKHLEALRKEIEEFPAQLNYNNVMDEM 325
Query: 110 PFLPYTEATILETLRRS 126
PF E E++RR
Sbjct: 326 PF---AERCARESIRRD 339
>pdb|3TIK|A Chain A, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|B Chain B, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|C Chain C, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|D Chain D, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
Length = 454
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 54 CKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAK---AVQDELDTVVGR-NRLPTLEDM 109
C I+ +F+ G T T WS++++MH PA K A++ E++ + N +++M
Sbjct: 255 CGMIVAAMFA-GQHTSSITTTWSMLHLMH-PANVKHLEALRKEIEEFPAQLNYNNVMDEM 312
Query: 110 PFLPYTEATILETLRRS 126
PF E E++RR
Sbjct: 313 PF---AERCARESIRRD 326
>pdb|3P99|A Chain A, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|B Chain B, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|C Chain C, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|D Chain D, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
Length = 453
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 54 CKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAK---AVQDELDTVVGR-NRLPTLEDM 109
C I+ +F+ G T T WS++++MH PA K A++ E++ + N +++M
Sbjct: 254 CGMIVAAMFA-GQHTSSITTTWSMLHLMH-PANVKHLEALRKEIEEFPAQLNYNNVMDEM 311
Query: 110 PFLPYTEATILETLRRS 126
PF E E++RR
Sbjct: 312 PF---AERCARESIRRD 325
>pdb|2WV2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Brucei In Complex With Fluconazole
Length = 475
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 54 CKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAK---AVQDELDTVVGR-NRLPTLEDM 109
C I+ +F+ G T T WS++++MH PA K A++ E++ + N +++M
Sbjct: 268 CGMIVAAMFA-GQHTSSITTTWSMLHLMH-PANVKHLEALRKEIEEFPAQLNYNNVMDEM 325
Query: 110 PFLPYTEATILETLRRS 126
PF E E++RR
Sbjct: 326 PF---AERCARESIRRD 339
>pdb|3G1Q|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
Length = 450
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 54 CKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAK---AVQDELDTVVGR-NRLPTLEDM 109
C I+ +F+ G T T WS++++MH PA K A++ E++ + N +++M
Sbjct: 256 CGMIVAAMFA-GQHTSSITTTWSMLHLMH-PANVKHLEALRKEIEEFPAQLNYNNVMDEM 313
Query: 110 PFLPYTEATILETLRRS 126
PF E E++RR
Sbjct: 314 PF---AERCARESIRRD 327
>pdb|3GW9|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
Length = 450
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 54 CKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAK---AVQDELDTVVGR-NRLPTLEDM 109
C I+ +F+ G T T WS++++MH PA K A++ E++ + N +++M
Sbjct: 255 CGMIVAAMFA-GQHTSSITTTWSMLHLMH-PANVKHLEALRKEIEEFPAQLNYNNVMDEM 312
Query: 110 PFLPYTEATILETLRRS 126
PF E E++RR
Sbjct: 313 PF---AERCARESIRRD 326
>pdb|2ZUJ|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant(D297l)
Length = 415
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 21/96 (21%)
Query: 41 AATTVHGKNPIA--KCKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVV 98
A V+G+ PI + K++ G L G++T+ N L +S+ ++ AK+ + + +
Sbjct: 225 ANGQVNGR-PITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFL------AKSPEHRQELIE 277
Query: 99 GRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTI 134
R+P A E LRR S+VALG I
Sbjct: 278 RPERIP------------AACEELLRRFSLVALGRI 301
>pdb|2WUZ|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WUZ|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WX2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
pdb|2WX2|B Chain B, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
Length = 473
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 54 CKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAK---AVQDELDTVVGR-NRLPTLEDM 109
C I+ +F+ G T T WS++++MH P K + E+D + N +++M
Sbjct: 268 CGMIVAAMFA-GQHTSTITTSWSMLHLMH-PKNKKWLDKLHKEIDEFPAQLNYDNVMDEM 325
Query: 110 PFLPYTEATILETLRRS 126
PF E + E++RR
Sbjct: 326 PF---AERCVRESIRRD 339
>pdb|3KHM|A Chain A, Crystal Structure Of Sterol 14alpha-Demethylase (Cyp51)
From Trypanosoma Cruzi In Complex With Inhibitor
Fluconazole
Length = 464
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 54 CKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAK---AVQDELDTVVGR-NRLPTLEDM 109
C I+ +F+ G T T WS++++MH P K + E+D + N +++M
Sbjct: 259 CGMIVAAMFA-GQHTSTITTSWSMLHLMH-PKNKKWLDKLHKEIDEFPAQLNYDNVMDEM 316
Query: 110 PFLPYTEATILETLRRS 126
PF E + E++RR
Sbjct: 317 PF---AERCVRESIRRD 330
>pdb|3K1O|A Chain A, Crystal Structure Of Sterol 14-alpha Demethylase (cyp51)
From Trypanosoma Cruzi In Complex With A Potential
Antichagasic Drug, Posaconazole
pdb|3KSW|A Chain A, Crystal Structure Of Sterol 14alpha-demethylase (cyp51)
From Trypanosoma Cruzi In Complex With An Inhibitor Vnf
((4-(4-
Chlorophenyl)-n-[2-(1h-imidazol-1-yl)-1-
phenylethyl]benzamide)
Length = 458
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 54 CKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAK---AVQDELDTVVGR-NRLPTLEDM 109
C I+ +F+ G T T WS++++MH P K + E+D + N +++M
Sbjct: 253 CGMIVAAMFA-GQHTSTITTSWSMLHLMH-PKNKKWLDKLHKEIDEFPAQLNYDNVMDEM 310
Query: 110 PFLPYTEATILETLRRS 126
PF E + E++RR
Sbjct: 311 PF---AERCVRESIRRD 324
>pdb|3NYJ|A Chain A, Crystal Structure Analysis Of App E2 Domain
Length = 207
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 18 PPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQWSL 77
P ++ + L Y VR ++ R T H + K I T + I SL
Sbjct: 127 PRHVFNXLKKY-VRAEQKDRQHTLKHFEHVRXVDPKKAAQIRSQVXTHLRVIYERXNQSL 185
Query: 78 VYMMHYPAVAKAVQDELDTVV 98
+ + PAVA+ +QDE+D ++
Sbjct: 186 SLLYNVPAVAEEIQDEVDELL 206
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 48 KNPIAKCKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLE 107
K K + ++ + G++T TLQW L M A VQD L V R
Sbjct: 270 KMSFEDIKANVTEMLAGGVDTTSMTLQWHLYEM----ARNLKVQDMLRAEVLAARHQAQG 325
Query: 108 DMP----FLPYTEATILETLR 124
DM +P +A+I ETLR
Sbjct: 326 DMATMLQLVPLLKASIKETLR 346
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 48 KNPIAKCKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLE 107
K K + ++ + G++T TLQW L M A VQD L V R
Sbjct: 267 KMSFEDIKANVTEMLAGGVDTTSMTLQWHLYEM----ARNLKVQDMLRAEVLAARHQAQG 322
Query: 108 DMP----FLPYTEATILETLR 124
DM +P +A+I ETLR
Sbjct: 323 DMATMLQLVPLLKASIKETLR 343
>pdb|3MZS|A Chain A, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|B Chain B, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|C Chain C, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|D Chain D, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
Length = 486
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 51 IAKCKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMP 110
+ K I ++ + G+ T TLQW L M V + +++E+ + + +
Sbjct: 274 LEDVKANITEMLAGGVNTTSMTLQWHLYEMARSLNVQEMLREEVLNARRQAEGDISKMLQ 333
Query: 111 FLPYTEATILETLR 124
+P +A+I ETLR
Sbjct: 334 MVPLLKASIKETLR 347
>pdb|3FH2|A Chain A, The Crystal Structure Of The Probable Atp-Dependent
Protease (Heat Shock Protein) From Corynebacterium
Glutamicum
Length = 146
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 89 AVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRS 126
AV+ E++ ++G+ PT +PF P + + +LR
Sbjct: 60 AVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLELSLREG 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,924,283
Number of Sequences: 62578
Number of extensions: 134509
Number of successful extensions: 316
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 57
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)