RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16029
(159 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 88.5 bits (220), Expect = 3e-21
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
+ + +LF G +T +TL W+L + +P V + +++E+D V+G R PT +D+ +PY
Sbjct: 263 RATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGDKRSPTYDDLQNMPY 322
Query: 115 TEATILETLRRSSVVALGTIHAVTR 139
+A I ETLR VV L VT+
Sbjct: 323 LDAVIKETLRLHPVVPLLLPREVTK 347
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 68.3 bits (167), Expect = 4e-14
Identities = 28/70 (40%), Positives = 47/70 (67%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
K ++ +LF+ G +T +T++W++ ++ +P + K Q+ELD VVGR+RL + D+P L Y
Sbjct: 299 KALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRDRLVSESDLPQLTY 358
Query: 115 TEATILETLR 124
+A I ET R
Sbjct: 359 LQAVIKETFR 368
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 64.9 bits (158), Expect = 6e-13
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
K ++ +LF+ G +T + ++WSL M+ P++ K +E+D V+GRNR D+P LPY
Sbjct: 291 KALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNRRLVESDLPKLPY 350
Query: 115 TEATILETLRRSSVVAL 131
+A E+ R+ L
Sbjct: 351 LQAICKESFRKHPSTPL 367
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 64.7 bits (158), Expect = 6e-13
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 46 HGKNPIAKCKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDEL-DTVVGRNRLP 104
+ + I I D F G++T +L+W ++ + +YP + + +E+ TV GRN++
Sbjct: 276 NTDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRNKV- 334
Query: 105 TLEDMPFLPYTEATILETLRRSSVVALGTIH 135
L D PYT A I ETLR V G
Sbjct: 335 LLSDRQSTPYTVAIIKETLRYKPVSPFGLPR 365
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 57.8 bits (139), Expect = 2e-10
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
K +I D+ G +T + W++ Y++ YP K QDE+ V+G + ED+P LPY
Sbjct: 290 KAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKGYVSEEDIPNLPY 349
Query: 115 TEATILETLRRSSVVAL 131
+A I E+LR V+ +
Sbjct: 350 LKAVIKESLRLEPVIPI 366
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 55.3 bits (133), Expect = 1e-09
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 17/98 (17%)
Query: 55 KQIIGDLFS---TGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPF 111
KQ+ DL + G ET L W+ + P+V +Q+E+D+V+G +R PT+EDM
Sbjct: 390 KQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLG-DRFPTIEDMKK 448
Query: 112 LPYTEATILETLRRSSVVALGTIHAVTRVFPPLTLRRS 149
L YT I E+LR PP+ +RRS
Sbjct: 449 LKYTTRVINESLRLYPQ-------------PPVLIRRS 473
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 51.4 bits (123), Expect = 3e-08
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
K ++ D+ + +T T +W++ ++ P V + +Q+ELD+VVGRNR+ D+ L Y
Sbjct: 298 KALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGRNRMVQESDLVHLNY 357
Query: 115 TEATILETLR 124
+ ET R
Sbjct: 358 LRCVVRETFR 367
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 51.0 bits (122), Expect = 3e-08
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
K II D+ G ET+ + ++W++ +M P K VQ EL VVG NR D+ L Y
Sbjct: 306 KAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGLNRRVEESDLEKLTY 365
Query: 115 TEATILETLR 124
+ T+ ETLR
Sbjct: 366 LKCTLKETLR 375
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 50.1 bits (120), Expect = 7e-08
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 66 METIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRR 125
+ET +++W + ++++P + K ++DELDTV+G T D LPY +A + ETLR
Sbjct: 306 IETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGNQVTEPDTHKLPYLQAVVKETLRL 365
Query: 126 SSVVAL 131
+ L
Sbjct: 366 HMAIPL 371
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 47.1 bits (112), Expect = 8e-07
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 56 QIIGDLFS---TGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFL 112
Q+ DL S G ET + L W+L + P + Q+ELD V+ R PT ED+ L
Sbjct: 278 QLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQ-GRPPTYEDIKEL 336
Query: 113 PYTEATILETLR 124
Y I E++R
Sbjct: 337 KYLTRCINESMR 348
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 47.0 bits (111), Expect = 1e-06
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
K I +L + N ++W++ M++ P + +E+D VVG+ R D+P L Y
Sbjct: 329 KPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVGKERFVQESDIPKLNY 388
Query: 115 TEATILETLRRSSVVALGTIH 135
+A I E R V A H
Sbjct: 389 VKAIIREAFRLHPVAAFNLPH 409
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 46.2 bits (109), Expect = 2e-06
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 71 NTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVA 130
N ++W+L M+ P + + ELD VVG++RL D+P L Y +A ET R
Sbjct: 332 NNMEWTLGEMLKNPEILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFR------ 385
Query: 131 LGTIHAVTRVFPPLTLRRSERL 152
IH PP R+ L
Sbjct: 386 ---IHPSAHYVPPHVARQDTTL 404
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 45.5 bits (107), Expect = 3e-06
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLP--TLEDMPFL 112
K +I D+ G +T + W + Y+M YP V K Q E+ + T +D+ L
Sbjct: 291 KAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNL 350
Query: 113 PYTEATILETLRRSSVVAL 131
PY A + ETLR V+ L
Sbjct: 351 PYFRALVKETLRIEPVIPL 369
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 39.1 bits (91), Expect = 5e-04
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 57 IIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVG---RNRLPTLEDMPFLP 113
IIG +F+ +T + L W L Y+ P+V +AV +E + T ED +P
Sbjct: 269 IIGVIFA-ARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMP 327
Query: 114 YTEATILETLRRSSVVALGTIHAVTRV 140
T I ETLR +S+++ AV V
Sbjct: 328 LTSRVIQETLRVASILSFTFREAVEDV 354
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 37.8 bits (88), Expect = 0.001
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 55 KQIIGDLFSTGMETIKNTL---QWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPF 111
+Q++ ++ +E TL +W++ + P + + E+ V G R+ T ED+P
Sbjct: 261 EQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDERV-TEEDLPN 319
Query: 112 LPYTEATILETLRRSSVVAL 131
LPY A ETLR+ S V L
Sbjct: 320 LPYLNAVFHETLRKYSPVPL 339
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 35.1 bits (81), Expect = 0.011
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 83 YPAVAKAVQDELDTVVGRNR-LPTLEDMPFLPYTEATILETLR 124
+P VA A+++E D V+G N+ + E+M + Y A + E++R
Sbjct: 323 HPEVASAIREEADRVMGPNQEAASFEEMKEMHYLHAALYESMR 365
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 34.8 bits (80), Expect = 0.014
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 20/80 (25%)
Query: 65 GMETIKNTLQWSLVYMMHYPAVAKAVQDELDT--------------------VVGRNRLP 104
G +T TL W + +M P VA+ + EL V L
Sbjct: 304 GRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLL 363
Query: 105 TLEDMPFLPYTEATILETLR 124
T + + L Y A I ETLR
Sbjct: 364 TYDSLGKLQYLHAVITETLR 383
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 33.9 bits (78), Expect = 0.022
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 16/71 (22%)
Query: 61 LFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATIL 120
L G ET N L W+L ++ +P ++ E D P EA +
Sbjct: 244 LLVAGHETTANALAWALYALLRHPDQLAKLRAEPD----------------RPLLEAVVE 287
Query: 121 ETLRRSSVVAL 131
ETLR V L
Sbjct: 288 ETLRLYPPVPL 298
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 34.0 bits (78), Expect = 0.024
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 51 IAKCKQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMP 110
+ +CK F G ET L W+L+ + P V+ E+ V G P+++ +
Sbjct: 318 MDECKT----FFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGE-TPSVDHLS 372
Query: 111 FLPYTEATILETLRRSSVVALGTIHAVTRVFPPLTL 146
L I E+L R++PP TL
Sbjct: 373 KLTLLNMVINESL---------------RLYPPATL 393
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 32.8 bits (75), Expect = 0.052
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 56 QIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLP----TLEDMPF 111
QII L+S G ET+ T ++ Y+ +P + ++ E + R R P D
Sbjct: 268 QIITILYS-GYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKR-PEDPIDWNDYKS 325
Query: 112 LPYTEATILETLRRSSVV 129
+ +T A I ET R +++V
Sbjct: 326 MRFTRAVIFETSRLATIV 343
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 32.2 bits (73), Expect = 0.087
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 65 GMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRN-RLPTLEDMPFLPYTEATILETL 123
G +T LQW + ++ P++ + DE+ G + + ED+ +PY +A +LE L
Sbjct: 318 GTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGL 377
Query: 124 RR 125
R+
Sbjct: 378 RK 379
>gnl|CDD|119342 cd06557, KPHMT-like, Ketopantoate hydroxymethyltransferase (KPHMT)
is the first enzyme in the pantothenate biosynthesis
pathway. Ketopantoate hydroxymethyltransferase (KPHMT)
catalyzes the first committed step in the biosynthesis
of pantothenate (vitamin B5), which is a precursor to
coenzyme A and is required for penicillin biosynthesis.
Length = 254
Score = 27.0 bits (61), Expect = 4.2
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 18/71 (25%)
Query: 58 IGDLFSTGMETI---KNTLQWSLVYM-MHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLP 113
+GD S GM + +TL +L M H AV + L VV DMPF
Sbjct: 38 VGD--SLGM-VVLGYDSTLPVTLDEMIYHTRAVRRGAPRAL--VVA--------DMPFGS 84
Query: 114 YTEATILETLR 124
Y + + + LR
Sbjct: 85 Y-QTSPEQALR 94
>gnl|CDD|234723 PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase;
Reviewed.
Length = 264
Score = 26.6 bits (60), Expect = 6.5
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 18/71 (25%)
Query: 58 IGDLFSTGMETI---KNTLQWSLVYM-MHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLP 113
+GD S GM + +TL +L M H AVA+ L VV DMPF
Sbjct: 41 VGD--SLGM-VVLGYDSTLPVTLDDMIYHTKAVARGAPRAL--VVA--------DMPFGS 87
Query: 114 YTEATILETLR 124
Y +A+ + LR
Sbjct: 88 Y-QASPEQALR 97
>gnl|CDD|223490 COG0413, PanB, Ketopantoate hydroxymethyltransferase [Coenzyme
metabolism].
Length = 268
Score = 26.4 bits (59), Expect = 7.1
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 16/70 (22%)
Query: 58 IGDLFSTGMETI--KNTLQWSLVYM-MHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
+GD S GM + +TL +L M H AV + + V D+PF Y
Sbjct: 41 VGD--SLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAF-VVA---------DLPFGSY 88
Query: 115 TEATILETLR 124
E + + L+
Sbjct: 89 -EVSPEQALK 97
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 26.5 bits (58), Expect = 7.5
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
+ +I L G +T + L W + +P V ++ E++T ED+ L Y
Sbjct: 303 RDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTKFDN------EDLEKLVY 356
Query: 115 TEATILETLR 124
A + E++R
Sbjct: 357 LHAALSESMR 366
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 26.4 bits (58), Expect = 7.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 103 LPTLEDMPFLPYTEATILETLRRS------SVVALGTIHAVTRVFPPLT-LRRSERLSTR 155
+P L + P+L T A L+ + SVVAL A R+ +T L RS LS
Sbjct: 157 VPGLAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQE 216
Query: 156 TRAV 159
AV
Sbjct: 217 DPAV 220
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 26.1 bits (57), Expect = 9.3
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 61 LFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLP-TLE--DMPFLPYTEA 117
L G ET + ++ ++ P +++E + + +LE D +P+T+
Sbjct: 275 LLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQC 334
Query: 118 TILETLRRSSVV 129
+ ETLR ++++
Sbjct: 335 VVNETLRVANII 346
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.132 0.390
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,046,297
Number of extensions: 706113
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 34
Length of query: 159
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 70
Effective length of database: 6,990,096
Effective search space: 489306720
Effective search space used: 489306720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)