RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16029
(159 letters)
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 141 bits (358), Expect = 1e-40
Identities = 36/124 (29%), Positives = 54/124 (43%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
+I +MLD+ K IGD+F G+ET + ++W
Sbjct: 236 FRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKW 295
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+L +++H P V K + +E+D VG +R PT+ D L EATI E LR V + H
Sbjct: 296 TLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPH 355
Query: 136 AVTR 139
Sbjct: 356 KANV 359
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 137 bits (348), Expect = 3e-39
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
++RD+ + + P + + + + + ++ D+F G +T+ + W
Sbjct: 251 FDKNSVRDITGALFKHSKKGP--RASGNLIPQEKIV----NLVNDIFGAGFDTVTTAISW 304
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
SL+Y++ P + + +Q ELDTV+GR R P L D P LPY EA ILET R SS + H
Sbjct: 305 SLMYLVTKPEIQRKIQKELDTVIGRERRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPH 364
Query: 136 AVTR 139
+ TR
Sbjct: 365 STTR 368
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 136 bits (346), Expect = 5e-39
Identities = 44/122 (36%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 20 NIRDMLDSY--SVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQWSL 77
RDM+D++ S K + +N I D+F +T+ LQW L
Sbjct: 248 APRDMMDAFILSAEKKAAGDSHGGGARLDLENVP----ATITDIFGASQDTLSTALQWLL 303
Query: 78 VYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIHAV 137
+ YP V VQ ELD VVGR+RLP + D P LPY A + E +R SS V + HA
Sbjct: 304 LLFTRYPDVQTRVQAELDQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHAT 363
Query: 138 TR 139
T
Sbjct: 364 TA 365
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 136 bits (345), Expect = 6e-39
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P + RD +DS+ +R K T + KN + +LF G ET+ TL++
Sbjct: 237 LDPNSPRDFIDSFLIRMQEEE--KNPNTEFYLKNLV----MTTLNLFIGGTETVSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+ +M +P V V +E+D V+G+NR P ED +PY EA I E R V+ +
Sbjct: 291 GFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLAR 350
Query: 136 AVTR 139
V +
Sbjct: 351 RVKK 354
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 135 bits (343), Expect = 1e-38
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P RD+ D V + +A + DLF G ET TL++
Sbjct: 236 LDPNCPRDLTDCLLVEMEKEK--HSAERLYTMDGIT----VTVADLFFAGTETTSTTLRY 289
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
L+ +M YP + + + +E+D V+G +R+P ++D +PY +A + E R ++V H
Sbjct: 290 GLLILMKYPEIEEKLHEEIDRVIGPSRIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPH 349
Query: 136 AVTR 139
TR
Sbjct: 350 EATR 353
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 135 bits (341), Expect = 2e-38
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
P + +D+Y + ++T +N I +G+L G ET N L+W
Sbjct: 242 RKPQLPQHFVDAYLDEMDQGK--NDPSSTFSKENLI----FSVGELIIAGTETTTNVLRW 295
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
++++M YP + VQ E+D ++G N P+ +D +PYTEA + E LR ++V LG H
Sbjct: 296 AILFMALYPNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFH 355
Query: 136 AVTR 139
A +
Sbjct: 356 ATSE 359
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 135 bits (341), Expect = 2e-38
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
L P N RD +D Y +R + ++ H +N I + LF G ET TL++
Sbjct: 237 LDPSNPRDFIDVYLLRMEKDK--SDPSSEFHHQNLI----LTVLSLFFAGTETTSTTLRY 290
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+ M+ YP V + VQ E++ V+G +R P L+D +PYT+A I E R ++ G H
Sbjct: 291 GFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPH 350
Query: 136 AVTR 139
VT+
Sbjct: 351 TVTK 354
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 133 bits (338), Expect = 5e-38
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
+ N +D +D + ++ + + ++ DLF G ET TL++
Sbjct: 238 MDMNNPQDFIDCFLMKMEKEK--HNQPSEFTIESLE----NTAVDLFGAGTETTSTTLRY 291
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIH 135
+L+ ++ +P V VQ+E++ V+GRNR P ++D +PYT+A + E R ++ H
Sbjct: 292 ALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPH 351
Query: 136 AVTR 139
AVT
Sbjct: 352 AVTC 355
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 133 bits (338), Expect = 5e-38
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 20 NIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQWSLVY 79
RD+ +++ + ++ + +N ++ DLFS GM T TL W L+
Sbjct: 245 PPRDLTEAFLAEMEKAK--GNPESSFNDENLR----IVVADLFSAGMVTTSTTLAWGLLL 298
Query: 80 MMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVALGTIHAVTR 139
M+ +P V + VQ E+D V+G+ R P + D +PYT A I E R +V LG H +R
Sbjct: 299 MILHPDVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSR 358
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 133 bits (336), Expect = 1e-37
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 16 LTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLFSTGMETIKNTLQW 75
+ RDM D ++ R R + + + + DLF G ET +TL W
Sbjct: 247 MVAGQWRDMTDYM-LQGVGRQRVEEGPGQLLEGHVH----MSVVDLFIGGTETTASTLSW 301
Query: 76 SLVYMMHYPAVAKAVQDELDTVVGRN---RLPTLEDMPFLPYTEATILETLRRSSVVALG 132
++ +++H+P + + +Q+ELD +G T +D LP ATI E LR VV L
Sbjct: 302 AVAFLLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLA 361
Query: 133 TIHAVTR 139
H TR
Sbjct: 362 LPHRTTR 368
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 81.2 bits (201), Expect = 7e-19
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
+ +L +ET N+L W L + P + + E+ +V+ N+ P ED+ +PY
Sbjct: 285 YAAVTELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQSVLPDNQTPRAEDLRNMPY 344
Query: 115 TEATILETLR 124
+A + E++R
Sbjct: 345 LKACLKESMR 354
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 70.0 bits (172), Expect = 5e-15
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
K + ++ + G++T TLQW L M V ++ E+ + + + +P
Sbjct: 277 KANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLAARHQAQGDMATMLQLVPL 336
Query: 115 TEATILETLR 124
+A+I ETLR
Sbjct: 337 LKASIKETLR 346
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 65.8 bits (161), Expect = 2e-13
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPY 114
+ ++ L+ W + Y++ +P +AV++E+ G L E P
Sbjct: 256 RAMLLQLW-VTQGNAGPAAFWVMGYLLTHPEALRAVREEIQ---GGKHLRLEERQKNTPV 311
Query: 115 TEATILETLRRSSVVAL 131
++ + ETLR ++ +
Sbjct: 312 FDSVLWETLRLTAAALI 328
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 64.3 bits (157), Expect = 5e-13
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 55 KQIIG---DLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVV----------GRN 101
+ + WSL M+ P KA +E+ + G
Sbjct: 256 LEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNP 315
Query: 102 RLPTLEDMPFLPYTEATILETLRRSSVVAL 131
+ ++ LP ++ I E+LR SS
Sbjct: 316 ICLSQAELNDLPVLDSIIKESLRLSSASLN 345
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 64.2 bits (157), Expect = 6e-13
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 61 LFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATIL 120
+ G T T W+L+ +M + AV DELD + G R + + +P E +
Sbjct: 253 MMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGDGRSVSFHALRQIPQLENVLK 312
Query: 121 ETLR 124
ETLR
Sbjct: 313 ETLR 316
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 64.0 bits (156), Expect = 6e-13
Identities = 13/84 (15%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 55 KQIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLP-------TLE 107
+ ++ L+ + W L++++ P AV+ EL++++ + P +
Sbjct: 265 RALVLQLW-ATQGNMGPAAFWLLLFLLKNPEALAAVRGELESILWQAEQPVSQTTTLPQK 323
Query: 108 DMPFLPYTEATILETLRRSSVVAL 131
+ P ++ + E+LR ++ +
Sbjct: 324 VLDSTPVLDSVLSESLRLTAAPFI 347
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 63.8 bits (156), Expect = 9e-13
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 65 GMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLR 124
G ET L ++L +++ P V + +E V+ + +P+ + + L Y + E LR
Sbjct: 265 GHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLV-DPVPSYKQVKQLKYVGMVLNEALR 323
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 62.3 bits (152), Expect = 3e-12
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 61 LFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATIL 120
+ + G ETI +T+ W L + +P A ++DE++ V G R ED+ L +T I+
Sbjct: 271 ILTPGSETIASTIMWLLQALADHPEHADRIRDEVEAVTG-GRPVAFEDVRKLRHTGNVIV 329
Query: 121 ETLR 124
E +R
Sbjct: 330 EAMR 333
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 62.2 bits (152), Expect = 3e-12
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 65 GMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLR 124
G ET N L ++++ + P + +Q E+D V+G R ED+ L Y + E+LR
Sbjct: 255 GHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRLQYLSQVLKESLR 314
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 59.2 bits (144), Expect = 3e-11
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 56 QIIGDLFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYT 115
QI+ LF+ G ET+ + L + + + + + V+ E + + ++ T E + +PY
Sbjct: 247 QILLLLFA-GHETLTSALSSFCLLLGQHSDIRERVRQEQNKLQL-SQELTAETLKKMPYL 304
Query: 116 EATILETLRRSSVV 129
+ + E LR V
Sbjct: 305 DQVLQEVLRLIPPV 318
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 58.5 bits (142), Expect = 5e-11
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 65 GMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLR 124
+T+ +L + L + +P V +A+ E+ TV+G R ++D+ L E I E++R
Sbjct: 307 APDTMSVSLFFMLFLIAKHPNVEEAIIKEIQTVIG-ERDIKIDDIQKLKVMENFIYESMR 365
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 56.5 bits (137), Expect = 3e-10
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 65 GMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVG-RNRLPTLEDMPFLPYTEATILETL 123
G T T W ++ + K E TV G T + + L + I ETL
Sbjct: 264 GQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETL 323
Query: 124 R 124
R
Sbjct: 324 R 324
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 52.3 bits (126), Expect = 8e-09
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 65 GMETIKNTLQWSLVYMMHYPAVAK--AVQDELDTVVGRNRLPTLEDMPFLPYTEATILET 122
G T T WS++++MH V A++ E++ + L M +P+ E E+
Sbjct: 265 GQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEFPAQ--LNYNNVMDEMPFAERCARES 322
Query: 123 LR 124
+R
Sbjct: 323 IR 324
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 45.7 bits (108), Expect = 2e-06
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 56 QIIGDLFSTGMETIKNTLQWSLVYMMHY-----PAVAKAVQDELDTVVGRN-RLPTLEDM 109
+ +L ++ M+ V + +E+ +V+ N T+ +
Sbjct: 282 EATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMGAI 341
Query: 110 PFLPYTEATILETLR 124
+ T++ + E LR
Sbjct: 342 EKMELTKSVVYECLR 356
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 41.0 bits (96), Expect = 5e-05
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 46 HGKNPIAKCKQIIGDLFSTGMETIKNTLQWSLVYM-MHYPAVAKAVQDELDTVVGR--NR 102
G I+ + +K +L ++ + + + +E+ + +
Sbjct: 258 LGVPKDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIRGAIKSYGDG 317
Query: 103 LPTLEDMPFLPYTEATILETLR 124
TLE + +P T++ + E+LR
Sbjct: 318 NVTLEAIEQMPLTKSVVYESLR 339
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 2e-04
Identities = 15/148 (10%), Positives = 46/148 (31%), Gaps = 28/148 (18%)
Query: 14 PLLTPPNIRDMLDSYSVRKSRRPRWKTAAT--TVHGKNPIAKCKQIIGDLFSTGMETIKN 71
+ + + D V+ + + K+ ++ ++ L S E ++
Sbjct: 23 SVFEDAFVDN-FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 72 TLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRRSSVVAL 131
++ L +Y + ++ E R P++ ++ +
Sbjct: 82 FVEEVLRI--NYKFLMSPIKTE-------QRQPSMMTRMYIEQRD--------------- 117
Query: 132 GTIHAVTRVFPPLTLRRSERLSTRTRAV 159
++ +VF + R + +A+
Sbjct: 118 -RLYNDNQVFAKYNVSRLQPYLKLRQAL 144
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 35.6 bits (83), Expect = 0.004
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 62 FSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILE 121
G ET + L + + + +P V + +Q+E+D V+ PT + + + Y + + E
Sbjct: 281 IFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNE 340
Query: 122 TLR 124
TLR
Sbjct: 341 TLR 343
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 34.9 bits (81), Expect = 0.006
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 61 LFSTGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVG 99
L G ET+ + L WS + + H P K V + + +
Sbjct: 218 LLVAGHETVASALTWSFLLLSHRPDWQKRVAESEEAALA 256
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 35.0 bits (81), Expect = 0.007
Identities = 7/65 (10%), Positives = 16/65 (24%), Gaps = 17/65 (26%)
Query: 65 GMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLR 124
+ I L +S + + +P + ++ E + E R
Sbjct: 243 PIVAISYFLVFSALALHEHPKYKEWLRSGN-----------------SREREMFVQEVRR 285
Query: 125 RSSVV 129
Sbjct: 286 YYPFG 290
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 32.0 bits (73), Expect = 0.068
Identities = 7/86 (8%), Positives = 15/86 (17%), Gaps = 21/86 (24%)
Query: 56 QIIGDLFS---TGMETIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTLEDMPFL 112
+ I + + + + A+ +
Sbjct: 230 HVAAVELVNVLRPTVAIAVYITFVAHALQTCSGIRAALVQQP------------------ 271
Query: 113 PYTEATILETLRRSSVVALGTIHAVT 138
Y E + E R A
Sbjct: 272 DYAELFVQEVRRFYPFFPAVVARASQ 297
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 28.0 bits (63), Expect = 1.4
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 84 PAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETLRR 125
PA+ + + + P+ D+ + +ET R
Sbjct: 73 PALVDDREFHAELMQAALNKPSNSDVYSVAMAR--FVETFAR 112
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 28.2 bits (63), Expect = 1.5
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 11 STAPLLTPPNIRDMLDSYSV----RKSRRPRWKTAATTVHG 47
L+ ++ +++ S W+ A V+G
Sbjct: 324 DLVSSLSRT-YKESRNAFRKALYGTTSETATWRRCANYVNG 363
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural
genomics; HET: MSE; 1.75A {Neisseria meningitidis
serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Length = 275
Score = 27.5 bits (62), Expect = 2.0
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 18/71 (25%)
Query: 58 IGDLFSTGMETI---KNTLQWSLVYM-MHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLP 113
+GD S GM + K+TL SL M H VA+ ++ + +V D+PF
Sbjct: 43 VGD--SLGM-AVQGRKSTLPVSLRDMCYHTECVARGAKNAM--IVS--------DLPFGA 89
Query: 114 YTEATILETLR 124
Y + + +
Sbjct: 90 Y-QQSKEQAFA 99
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 27.4 bits (61), Expect = 2.5
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 11/57 (19%)
Query: 11 STAPLLTPPNIRDMLDSY-----SVRKSRRPRWKTAATTVHGKNPIAKCKQIIGDLF 62
T+ L +D + + +K+ PRWK + +G +F
Sbjct: 301 KTSSFLDQR-FQDADEKFMEVMYGTKKTSLPRWKFCVSDTEN-----NLGFALGPMF 351
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural
genomics, PSI, protein structure initiative; 2.80A
{Mycobacterium tuberculosis} SCOP: c.1.12.8
Length = 281
Score = 27.2 bits (61), Expect = 2.6
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 15/61 (24%)
Query: 65 GMETIKNTLQWSLVYM-MHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLPYTEATILETL 123
G +T T+ S+ + V + L VV D+PF Y EA L
Sbjct: 70 GYDT---TVPISIDELIPLVRGVVRGAPHAL--VVA--------DLPFGSY-EAGPTAAL 115
Query: 124 R 124
Sbjct: 116 A 116
>2ch0_A Inner nuclear membrane protein MAN1; winged helix motif, DNA,
nuclear protein; NMR {Homo sapiens}
Length = 133
Score = 26.3 bits (57), Expect = 2.9
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 7 RRSTSTAPLLTPPNIRDMLDSYSVRKSRRPRWKTAATTVHG 47
+ + P + P++RD L RK + W A +
Sbjct: 36 QENKDLQPYMPIPHVRDSLIQPHDRKKMKKVWDRAVDFLAA 76
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase;
HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Length = 397
Score = 26.7 bits (58), Expect = 3.5
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 1 MGAYFRRRSTSTAPLLTPPNIRDMLDSYSVRKSRRPRWKTAATTVHGKNPIAKCKQIIGD 60
+G + +T ++ + + S + R K G +A Q++
Sbjct: 270 LGNDVTNITNTTKEIIMNKEVIAVNQDSSFSPANRIWVKGDQQLFSG--NLANNTQVVI- 326
Query: 61 LFSTGMETIKNTLQWSLVYMMHYP 84
L + G K T W +++ + P
Sbjct: 327 LLNAGDSAAKMTATWDDIWVYNLP 350
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase;
beta-alpha-barrel, TIM-barrel, ketopantoate,
selenomethionin decamer; HET: KPL; 1.80A {Escherichia
coli} SCOP: c.1.12.8
Length = 264
Score = 26.7 bits (60), Expect = 3.7
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 58 IGDLFSTGMETI---KNTLQWSLVYM-MHYPAVAKAVQDELDTVVGRNRLPTLEDMPFLP 113
+GD S GM T+ +TL ++ + H AV + + L ++ D+PF+
Sbjct: 43 VGD--SLGM-TVQGHDSTLPVTVADIAYHTAAVRRGAPNCL--LLA--------DLPFMA 89
Query: 114 YTEATILETLR 124
Y AT +
Sbjct: 90 Y--ATPEQAFE 98
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural
genomics consortium, SGC, protein binding; 1.80A {Homo
sapiens}
Length = 132
Score = 25.3 bits (55), Expect = 6.2
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 66 METIKNTLQWSLVYMMHYPAVAKAVQDELDTVVGRNRLPTL 106
ME+I+ W + H+ + L +RL
Sbjct: 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLF 61
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 25.8 bits (56), Expect = 7.7
Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 20/129 (15%)
Query: 51 IAKCKQIIGDLFSTGMETIKNTLQWSLVYMM-HYPAVAKAVQDEL-------DTVVGRNR 102
+ ++ + G E K + ++L + P + ++ + +
Sbjct: 105 VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTA 164
Query: 103 LPTLEDM---------PFLPYTEATIL---ETLRRSSVVALGTIHAVTRVFPPLTLRRSE 150
L +E M PFLP + E +R S+V AL + + + ++R E
Sbjct: 165 LNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLE 224
Query: 151 RLSTRTRAV 159
L+ + V
Sbjct: 225 ELNDTSSLV 233
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 25.8 bits (57), Expect = 7.7
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 11 STAPLLTPPNIRDMLDSYSV----RKSRRPRWKTAATTVHG 47
+ AP LT + + + Y + R RWK + V
Sbjct: 330 ARAPWLTRALVAEDFEFYGRTLTGAQQLRDRWKRGVSLVEN 370
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex;
HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A*
3sl0_A*
Length = 413
Score = 25.6 bits (56), Expect = 8.7
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 129 VALGTIHAVTRVFPPLTL 146
VA +I + +++ L +
Sbjct: 197 VAFSSILSSLQMYQNLRV 214
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.132 0.390
Gapped
Lambda K H
0.267 0.0570 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,368,995
Number of extensions: 128340
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 45
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)