RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16029
         (159 letters)



>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 198

 Score = 29.8 bits (67), Expect = 0.11
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 113 PYTEATILETLRRSSVVALGTIH--AVTRVFPPLTLRRSER 151
           P T     + L R  +  +G +H    T     LT+R+++ 
Sbjct: 2   PLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDS 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 560,997
Number of extensions: 22782
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 3
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)