BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1603
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P80686|CUH1C_TENMO Larval/pupal cuticle protein H1C OS=Tenebrio molitor GN=LPCP-22
PE=1 SV=2
Length = 211
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 86/157 (54%), Gaps = 34/157 (21%)
Query: 35 AVGSQSQSVVRSLDGNSVHSVYSKAVDTPFSSVRKYDSRVSNDAIAYAHAPVYHAPVYSA 94
AVG+ QSVVRSL GN S YSKAVD+ FSSVRK+D+RV+NDA+A AHAPV ++A
Sbjct: 73 AVGASHQSVVRSLGGNQAVSHYSKAVDSAFSSVRKFDTRVTNDALAVAHAPVVSTYAHAA 132
Query: 95 PVVKSVAPVTYA-AAPVLK---------------YAAPYPYHAPVVKSIAHPVAYSPVAY 138
PVV TYA AAPV+ A Y HAPV + A
Sbjct: 133 PVVS-----TYAHAAPVVSSYAAHAPVAAYAAHAPVATYAAHAPV----------ATYAA 177
Query: 139 HAPVSAGVAPYAVKAPYSPAAVVSHVDFDGYGVHYAF 175
HAPV VA YSPAAVVSH F G G YA+
Sbjct: 178 HAPV---VATRTSAVAYSPAAVVSHASFSGLGASYAW 211
>sp|Q94804|CU23_TENMO Cuticle protein LPCP-23 OS=Tenebrio molitor GN=LPCP-23 PE=3 SV=2
Length = 231
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 93/175 (53%), Gaps = 51/175 (29%)
Query: 35 AVGSQSQSVVRSLDGNSVHSVYSKAVDTPFSSVRKYDSRVSNDA---------------- 78
AVG+ QSVVRSL GN S YSKAVD+ FSSVRK+D+R++NDA
Sbjct: 74 AVGASHQSVVRSLGGNQAVSHYSKAVDSAFSSVRKFDTRITNDALLRAHAPVAVAHAAPV 133
Query: 79 ---IAYAHAPVY----HAPVYS-----APVVKSV---APV--TYAA-APVLKYAAPYPYH 120
+ AHAPV HAP+ S AP+V S AP+ +YAA APVL A Y H
Sbjct: 134 VVHLTAAHAPVVSSYAHAPLVSSYAAHAPLVSSYAAHAPLVSSYAAHAPVLSTA--YAAH 191
Query: 121 APVVKSIAHPVAYSPVAYHAPVSAGVAPYAVKAPYSPAAVVSHVDFDGYGVHYAF 175
APVV S A PV VA A V YSPAAVVSH F G G YA+
Sbjct: 192 APVVSSYAAPV----VARTAAVG-----------YSPAAVVSHTSFTGLGASYAW 231
>sp|P80685|CUG1A_TENMO Pupal cuticle protein G1A OS=Tenebrio molitor PE=1 SV=1
Length = 211
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 90/176 (51%), Gaps = 56/176 (31%)
Query: 35 AVGSQSQSVVRSLDGNSVHSVYSKAVDTPFSSVRKYDSRVSNDAI--------------- 79
AVG+ Q++VRSL GN S YSKAVD+ FSSVRK+D+R++NDA+
Sbjct: 57 AVGASHQAIVRSLGGNQAVSHYSKAVDSAFSSVRKFDTRITNDALLHAPVAVAHAAPVVS 116
Query: 80 ----------AYAHAPVY-----HAPVYS-----APVVKSVAPVTYAAAPVLKYAAPYPY 119
+YAHAP+ HAP+ S AP+V S A A APVL A Y
Sbjct: 117 TYAAHAPVVSSYAHAPLVSSYAAHAPLVSSYAAHAPLVSSYA----AHAPVLSTA--YAA 170
Query: 120 HAPVVKSIAHPVAYSPVAYHAPVSAGVAPYAVKAPYSPAAVVSHVDFDGYGVHYAF 175
HAPVV S A PV VA A V YSPAAVVSH F G G YA+
Sbjct: 171 HAPVVSSYAAPV----VARTAAVG-----------YSPAAVVSHTSFTGLGASYAW 211
>sp|P80684|CUC1B_TENMO Pupal cuticle protein C1B OS=Tenebrio molitor PE=1 SV=1
Length = 161
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 22 PSVAYVTPSYAHSAVGSQSQSVVRSLDGNSVHSVYSKAVDTPFSSVRKYDSRVSNDAIAY 81
P V+Y P A A+ SQS +++RS S YSK +DTPFSSVRK D RVSN + +
Sbjct: 26 PVVSYGAP-LAAPAITSQSSNILRSFGNLGQVSTYSKTIDTPFSSVRKADIRVSNPGVRF 84
>sp|P80233|CU67B_LOCMI Cuticle protein 67, isoform B OS=Locusta migratoria PE=1 SV=1
Length = 104
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 38 SQSQSVVRSLDGNSVHSVYSKAVDTPFSSVRKYDSRVSNDAIAY 81
SQS +++RS S Y+K VDTP+SSV K D RVSNDAIA+
Sbjct: 40 SQSSNILRSYGNLGQVSTYTKTVDTPYSSVTKSDVRVSNDAIAH 83
>sp|P80231|CU67A_LOCMI Cuticle protein 67, isoform A OS=Locusta migratoria PE=1 SV=1
Length = 98
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 38 SQSQSVVRSLDGNSVHSVYSKAVDTPFSSVRKYDSRVSNDAIAY 81
SQS +++RS S Y+K VDTP+SSV K D RVSNDAIA+
Sbjct: 34 SQSSNILRSYGNLGQVSTYTKTVDTPYSSVTKSDVRVSNDAIAH 77
>sp|P82167|CU213_LOCMI Cuticle protein 21.3 OS=Locusta migratoria PE=1 SV=1
Length = 200
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 34 SAVGSQSQSVVRSLDGNSVHSVYSKAVDTPFSSVRKYDSRVSND--AIAYAHAP 85
AVG+ +S + L G + + +SKAVD+P SSVR +SRVSND ++ Y P
Sbjct: 16 GAVGATLESTSKGLGGLNTITQFSKAVDSPTSSVRISNSRVSNDYGSLGYGALP 69
>sp|P45588|CU76_LOCMI Cuticle protein 76 OS=Locusta migratoria PE=1 SV=1
Length = 139
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 36 VGSQSQSVVRSLDGNSVHSVYSKAVDTPFSSVRKYDSRVSND 77
+ SQ +++RS S YSK VDTP+SSV K D RV+N+
Sbjct: 23 ITSQQSNILRSYGNLGQVSTYSKTVDTPYSSVSKADIRVTNN 64
>sp|P27780|CUP8_DROME Pupal cuticle protein Edg-84A OS=Drosophila melanogaster GN=Edg84A
PE=2 SV=1
Length = 188
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 43/176 (24%)
Query: 3 MFQLALLTCLLVAVQAGDYP----------------SVAYVTPSYAHSAVGSQSQSVVRS 46
+ + AL L+ QAG P S Y V SQS+S
Sbjct: 2 LVKTALFVTLIGLAQAGPLPAKSSGSEDTYDSHPQYSFNYDVQDPETGDVKSQSES---- 57
Query: 47 LDGNSVHSVYS--------KAVDTPFSSVRKYDSRVSNDAIAYAHA-----------PVY 87
DG+ VH YS + VD VR +++ V + ++ A V
Sbjct: 58 RDGDVVHGQYSVNDADGYRRTVDYTADDVRGFNAVVRREPLSSAAVVVKPQATAVVPKVQ 117
Query: 88 HAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPV-AYSPVAYHAPV 142
P+ P +K P++ A+A V + AP +HAPV + H A+S V++H PV
Sbjct: 118 LKPLKKLPALK---PLSQASAVVHRSFAPVVHHAPVTHVVHHAAPAHSFVSHHVPV 170
>sp|Q0UG82|INO80_PHANO Putative DNA helicase INO80 OS=Phaeosphaeria nodorum (strain SN15 /
ATCC MYA-4574 / FGSC 10173) GN=INO80 PE=3 SV=2
Length = 1673
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 31/173 (17%)
Query: 15 AVQAGDYPSVAYVTPSYAHSAVG-------------SQSQSVVRSLDGNSVHSVYSKAVD 61
A+ + D + Y P+ H G Q++ D HS Y K
Sbjct: 68 ALHSRDTSASKYYDPTSDHGERGLARDTARYDPQHSPQTRETHTYSDARPAHSPYEKPYQ 127
Query: 62 TPFSSVRKYDSRV---------SNDAIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLK 112
+P +S + S + + A +H+PV + ++ P YA P +K
Sbjct: 128 SPIASSYAHQSPLQRPLSQHHHTGGMEAMSHSPVSPSVYHANRGAVQPPPANYARRPSMK 187
Query: 113 YAA----PYP--YHAPVVKSIAHPVAYSPVAYHAPVSAGV---APYAVKAPYS 156
A P+P +H V P P++ + +SAG P + P S
Sbjct: 188 DEARENRPFPLQHHLLTVTQAPPPTRADPMSLSSIMSAGTDSDPPAKAQPPAS 240
>sp|P0AEC0|YOAE_ECOLI UPF0053 inner membrane protein YoaE OS=Escherichia coli (strain
K12) GN=yoaE PE=1 SV=1
Length = 518
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 70 YDSRVSNDAIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAH 129
D+ S DA+ A V H PV A VV ++A + A+ P+ ++ +P + S
Sbjct: 135 LDAVFSLDAVITAVGMVNHLPVMMAAVVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLL 194
Query: 130 PVAYSPVA----YHAP 141
+ S VA +H P
Sbjct: 195 MIGLSLVAEGFGFHIP 210
>sp|P0AEC1|YOAE_ECOL6 UPF0053 inner membrane protein YoaE OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=yoaE PE=3 SV=1
Length = 518
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 70 YDSRVSNDAIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAH 129
D+ S DA+ A V H PV A VV ++A + A+ P+ ++ +P + S
Sbjct: 135 LDAVFSLDAVITAVGMVNHLPVMMAAVVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLL 194
Query: 130 PVAYSPVA----YHAP 141
+ S VA +H P
Sbjct: 195 MIGLSLVAEGFGFHIP 210
>sp|P0AEC2|YOAE_ECO57 UPF0053 inner membrane protein YoaE OS=Escherichia coli O157:H7
GN=yoaE PE=3 SV=1
Length = 518
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 70 YDSRVSNDAIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAH 129
D+ S DA+ A V H PV A VV ++A + A+ P+ ++ +P + S
Sbjct: 135 LDAVFSLDAVITAVGMVNHLPVMMAAVVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLL 194
Query: 130 PVAYSPVA----YHAP 141
+ S VA +H P
Sbjct: 195 MIGLSLVAEGFGFHIP 210
>sp|P42522|MYOC_DICDI Myosin IC heavy chain OS=Dictyostelium discoideum GN=myoC PE=4 SV=2
Length = 1182
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 47 LDGNSVHSVYSKAVDTPFSSVRKYDSRVSNDAIAYAHAPVYHAPVYSAP----------- 95
L N H T + VRK S+VS + A PV P+ + P
Sbjct: 944 LKKNQFHIASGLPASTTVAKVRKNPSQVSTPSKPIAK-PV-AKPMVAKPSGGSVIMKKPA 1001
Query: 96 ---------VVKSVAPVTYAAAPVLKYAAPYPYHAPVVK 125
V+K AP AP++K AP P AP++K
Sbjct: 1002 PAAPPSGPPVMKKPAPTAPGGAPMMKKPAPAPGGAPMMK 1040
>sp|P25847|MSH2_YEAST DNA mismatch repair protein MSH2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MSH2 PE=1 SV=2
Length = 964
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 94 APVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVAYHAP 141
+ +V+ + +T PV + + H V+ S AH +Y+P+ Y P
Sbjct: 593 SALVREIINITLTYTPVFEKLSLVLAHLDVIASFAHTSSYAPIPYIRP 640
>sp|B3QL59|MUTL_CHLP8 DNA mismatch repair protein MutL OS=Chlorobaculum parvum (strain
NCIB 8327) GN=mutL PE=3 SV=1
Length = 626
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 122 PVVKSIAHPVAYSPVAYHAPVSAGVAPYAVKAPYSPAAVVSHVDFDG 168
PVVK +SP A AP A V + + P S + +++ DF G
Sbjct: 319 PVVKRAVRTADFSPEATVAPSPAPVGSHGIGLPESSSRKLAYSDFSG 365
>sp|Q6GZT0|046L_FRG3G Uncharacterized protein 046L OS=Frog virus 3 (isolate Goorha)
GN=FV3-046L PE=4 SV=1
Length = 81
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 84 APVYHAP----VYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKS 126
+P+ P + SAPVV++ APV A++PV+K + +PV +S
Sbjct: 20 SPIMFGPSLGAMLSAPVVRASAPVVRASSPVVKRKSLVKRKSPVKRS 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,622,192
Number of Sequences: 539616
Number of extensions: 2540030
Number of successful extensions: 7881
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 7389
Number of HSP's gapped (non-prelim): 430
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)