Query psy1603
Match_columns 175
No_of_seqs 83 out of 85
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 19:04:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11018 Cuticle_3: Pupal cuti 100.0 1.8E-34 3.9E-39 236.9 7.0 137 32-175 1-174 (174)
2 PF04527 Retinin_C: Drosophila 96.0 0.0047 1E-07 44.4 2.4 47 50-100 7-57 (66)
3 PTZ00459 mucin-associated surf 34.1 28 0.00061 30.9 2.0 19 1-19 1-21 (291)
4 PRK12750 cpxP periplasmic repr 28.8 43 0.00094 27.5 2.1 19 1-19 1-19 (170)
5 PF13956 Ibs_toxin: Toxin Ibs, 24.6 33 0.00072 19.2 0.5 12 3-14 1-13 (19)
6 PF08139 LPAM_1: Prokaryotic m 23.5 79 0.0017 18.8 2.0 13 2-14 5-17 (25)
7 PF07172 GRP: Glycine rich pro 21.5 77 0.0017 23.9 2.1 11 1-12 1-11 (95)
8 PF06286 Coleoptericin: Coleop 20.2 27 0.00058 28.5 -0.6 16 3-18 1-16 (143)
9 PRK15208 long polar fimbrial c 16.2 88 0.0019 26.5 1.6 21 3-23 5-26 (228)
10 KOG4063|consensus 15.1 1.2E+02 0.0027 25.2 2.1 17 3-19 5-21 (158)
No 1
>PF11018 Cuticle_3: Pupal cuticle protein C1; InterPro: IPR022727 Insect cuticles are composite structures whose mechanical properties are optimised for biological function. The major components are the chitin filament system and the cuticular proteins, and the cuticle's properties are determined largely by the interactions between these two sets of molecules. The proteins can be ordered by species.
Probab=100.00 E-value=1.8e-34 Score=236.92 Aligned_cols=137 Identities=51% Similarity=0.746 Sum_probs=95.2
Q ss_pred ccCcccceecceeeecCCcceeeeecccccCCCcceeeecccccccccccccccc--------cccceecCCccc-ee-c
Q psy1603 32 AHSAVGSQSQSVVRSLDGNSVHSVYSKAVDTPFSSVRKYDSRVSNDAIAYAHAPV--------YHAPVYSAPVVK-SV-A 101 (175)
Q Consensus 32 a~pAv~at~~sivrs~~~~a~VstysKaI~Tp~Ssv~k~d~rVsn~a~~~a~a~v--------~k~~~yaaPv~~-tY-~ 101 (175)
+.++|++|||||+|+++ ++||+|+|+|||||||+||+|+||+||++++++++. .+...+++|+.. .| +
T Consensus 1 ~~~av~~t~~~~~r~~~--~~vS~yskav~tp~Ssv~k~d~risN~~~~~a~A~~~~~a~~~~a~~~a~aAPvv~~s~aA 78 (174)
T PF11018_consen 1 SAPAVGSTQENTVRSFG--GTVSHYSKAVDTPYSSVRKSDTRISNDAYTPAYAAPAYAAPAPYAKPYAAAAPVVAKSYAA 78 (174)
T ss_pred CCccccccccceeeccC--cceeeeccCCCCCcceeEecccceecCccccccccccccccccccccccccCcceeeeccc
Confidence 46899999999999999 599999999999999999999999999999877531 122346677664 33 2
Q ss_pred cc--cccc-ccccccc-------CC----CCccCCc---cccccCCC-CC-------CCc--ccccccccccCCcccccc
Q psy1603 102 PV--TYAA-APVLKYA-------AP----YPYHAPV---VKSIAHPV-AY-------SPV--AYHAPVSAGVAPYAVKAP 154 (175)
Q Consensus 102 ~~--~Ya~-ap~~~YA-------AP----~~y~ap~---~~~~ah~~-~~-------ap~--a~aAP~~a~~~~~~~~v~ 154 (175)
|+ ++.. +|...|. +| ..|.+|. ...++.++ ++ +|. +++||++ ..+.|+
T Consensus 79 Pv~~~~~~AaPa~~~a~~~~~aaAP~~~~~a~aAPa~~~~~~yAa~apv~~~~~~~~a~~~Ya~aAPvv-----a~~~V~ 153 (174)
T PF11018_consen 79 PVVAKYAYAAPAVVYAKAAYAAAAPAYAKTAYAAPAVYAQTTYAAPAPVYAQTYAAAAPAVYAHAAPVV-----AAATVS 153 (174)
T ss_pred cccccccccCcccccccccccccCcceeeeeecccccccceeeccCCcccccccccccccccccccccc-----ccccee
Confidence 22 1111 3332221 34 2245554 12223222 21 122 4567764 278999
Q ss_pred ccCCceeceeeccCCCccCCC
Q psy1603 155 YSPAAVVSHVDFDGYGVHYAF 175 (175)
Q Consensus 155 YspA~~vsh~s~~g~g~~yg~ 175 (175)
|||+++||||||||||.||||
T Consensus 154 YSpA~~VsH~s~~g~g~~yg~ 174 (174)
T PF11018_consen 154 YSPAPAVSHMSFDGFGAHYGW 174 (174)
T ss_pred eccCCeeEEEeecCCcccccC
Confidence 999999999999999999999
No 2
>PF04527 Retinin_C: Drosophila Retinin like protein; InterPro: IPR007614 This entry consists of a number of Drosophila proteins which share a conserved C-terminal region related to that of the fly Retinin protein.
Probab=96.05 E-value=0.0047 Score=44.43 Aligned_cols=47 Identities=32% Similarity=0.352 Sum_probs=38.5
Q ss_pred cceeeeecccccCCCc---ceeeeccc-ccccccccccccccccceecCCcccee
Q psy1603 50 NSVHSVYSKAVDTPFS---SVRKYDSR-VSNDAIAYAHAPVYHAPVYSAPVVKSV 100 (175)
Q Consensus 50 ~a~VstysKaI~Tp~S---sv~k~d~r-Vsn~a~~~a~a~v~k~~~yaaPv~~tY 100 (175)
++.|+...|.++|+.| +.+.+|+| |..|.+ +|++|++...+|+++++
T Consensus 7 va~VG~vv~~vPtAVSHQS~T~VH~~a~vv~pvv----aPvVkttvv~~Pv~~~~ 57 (66)
T PF04527_consen 7 VAKVGAVVKSVPTAVSHQSSTQVHSKAPVVTPVV----APVVKTTVVAAPVVKTT 57 (66)
T ss_pred ccccceEEEecCccccccceeEEEccCceeeeee----cceEEEEEecCCceeee
Confidence 5678889999999996 77788884 888888 67788887788988764
No 3
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=34.06 E-value=28 Score=30.87 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=11.9
Q ss_pred Chhh--HHHHHHHHHHHHhcC
Q psy1603 1 MQMF--QLALLTCLLVAVQAG 19 (175)
Q Consensus 1 ~~mf--K~vv~~~~laaA~AG 19 (175)
|+|+ -=|||+|+|.+-|-|
T Consensus 1 MaMmMTGRVLLVCALCVLWCg 21 (291)
T PTZ00459 1 MAMMMTGRVLLVCALCVLWCG 21 (291)
T ss_pred CccchhchHHHHHHHHHHhcC
Confidence 6665 225666887776654
No 4
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=28.79 E-value=43 Score=27.50 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=12.6
Q ss_pred ChhhHHHHHHHHHHHHhcC
Q psy1603 1 MQMFQLALLTCLLVAVQAG 19 (175)
Q Consensus 1 ~~mfK~vv~~~~laaA~AG 19 (175)
|+|+|.++++|++..---|
T Consensus 1 ~~~~kkl~~~~v~~~l~lg 19 (170)
T PRK12750 1 MKLAKKLVLAAVVLPLTLG 19 (170)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 8999887666665553334
No 5
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=24.59 E-value=33 Score=19.24 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=6.6
Q ss_pred hhHHHHH-HHHHH
Q psy1603 3 MFQLALL-TCLLV 14 (175)
Q Consensus 3 mfK~vv~-~~~la 14 (175)
|+|++++ ..+|.
T Consensus 1 MMk~vIIlvvLLl 13 (19)
T PF13956_consen 1 MMKLVIILVVLLL 13 (19)
T ss_pred CceehHHHHHHHh
Confidence 6688554 34443
No 6
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=23.54 E-value=79 Score=18.77 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHH
Q psy1603 2 QMFQLALLTCLLV 14 (175)
Q Consensus 2 ~mfK~vv~~~~la 14 (175)
.|+|.+++..+.+
T Consensus 5 ~mmKkil~~l~a~ 17 (25)
T PF08139_consen 5 SMMKKILFPLLAL 17 (25)
T ss_pred HHHHHHHHHHHHH
Confidence 6787755544433
No 7
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.46 E-value=77 Score=23.86 Aligned_cols=11 Identities=36% Similarity=0.244 Sum_probs=4.6
Q ss_pred ChhhHHHHHHHH
Q psy1603 1 MQMFQLALLTCL 12 (175)
Q Consensus 1 ~~mfK~vv~~~~ 12 (175)
|+ -|.+|||+|
T Consensus 1 Ma-SK~~llL~l 11 (95)
T PF07172_consen 1 MA-SKAFLLLGL 11 (95)
T ss_pred Cc-hhHHHHHHH
Confidence 44 354443333
No 8
>PF06286 Coleoptericin: Coleoptericin; InterPro: IPR009382 This family consists of several insect coleoptericin, acaloleptin, holotricin and rhinocerosin proteins which are all known to be antibacterial proteins []. These all appear to be short, glycine-rich molecules, inducible by infection.; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=20.18 E-value=27 Score=28.47 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHhc
Q psy1603 3 MFQLALLTCLLVAVQA 18 (175)
Q Consensus 3 mfK~vv~~~~laaA~A 18 (175)
|+||+|.+||++...+
T Consensus 1 mmkl~i~~~lia~saa 16 (143)
T PF06286_consen 1 MMKLYIIFGLIALSAA 16 (143)
T ss_pred CceEeeehhHHHHHHh
Confidence 7899888888887554
No 9
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=16.23 E-value=88 Score=26.52 Aligned_cols=21 Identities=29% Similarity=0.165 Sum_probs=14.2
Q ss_pred hhH-HHHHHHHHHHHhcCCCCc
Q psy1603 3 MFQ-LALLTCLLVAVQAGDYPS 23 (175)
Q Consensus 3 mfK-~vv~~~~laaA~AG~la~ 23 (175)
||+ |++|+|....++||+...
T Consensus 5 ~~~~~~~~~~~~~~a~agv~l~ 26 (228)
T PRK15208 5 SFTALALALIAQNSFAGGVALS 26 (228)
T ss_pred HHHHHHHHHHhhHhhhccEEeC
Confidence 786 566666666688886543
No 10
>KOG4063|consensus
Probab=15.08 E-value=1.2e+02 Score=25.23 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHhcC
Q psy1603 3 MFQLALLTCLLVAVQAG 19 (175)
Q Consensus 3 mfK~vv~~~~laaA~AG 19 (175)
.||+++|++||.-++|.
T Consensus 5 ~~~~v~l~alls~a~aq 21 (158)
T KOG4063|consen 5 FLKTVILLALLSLAAAQ 21 (158)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 34666776666667765
Done!